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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP036278 Planctomycetes bacterium Pan181 chromosome, complete genome 5 crisprs cas3,RT,DinG,cas2,cas9,cas1,cas5,cas8c,cas7,cas4,DEDDh,csa3,WYL 0 3 17 0

Results visualization

1. NZ_CP036278
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP036278_1 956144-956243 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP036278_2 3091913-3092132 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP036278_3 3092338-3092772 Orphan NA
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP036278_4 3977870-3978808 TypeI NA
14 spacers
cas2,cas1,cas4,cas7,cas8c,cas5,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP036278_5 5659076-5659162 Unclear NA
1 spacers
cas3

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP036278_4 4.10|3978484|34|NZ_CP036278|PILER-CR,CRISPRCasFinder,CRT 3978484-3978517 34 NZ_CP022220 Bradyrhizobium guangxiense strain CCBAU 53363 plasmid p53363, complete sequence 959407-959440 8 0.765
NZ_CP036278_4 4.10|3978484|34|NZ_CP036278|PILER-CR,CRISPRCasFinder,CRT 3978484-3978517 34 NZ_CP030052 Bradyrhizobium guangdongense strain CCBAU 51649 plasmid unnamed, complete sequence 572247-572280 8 0.765
NZ_CP036278_4 4.10|3978484|34|NZ_CP036278|PILER-CR,CRISPRCasFinder,CRT 3978484-3978517 34 NZ_CP030054 Bradyrhizobium guangzhouense strain CCBAU 51670 plasmid unnamed1, complete sequence 751840-751873 8 0.765
NZ_CP036278_5 5.1|5659100|39|NZ_CP036278|CRISPRCasFinder 5659100-5659138 39 NC_015951 Streptomyces violaceusniger Tu 4113 plasmid pSTRVI01, complete sequence 144127-144165 8 0.795
NZ_CP036278_4 4.3|3978029|35|NZ_CP036278|PILER-CR,CRISPRCasFinder,CRT 3978029-3978063 35 NZ_CP032324 Azospirillum brasilense strain MTCC4035 plasmid p3, complete sequence 599610-599644 12 0.657
NZ_CP036278_4 4.3|3978029|35|NZ_CP036278|PILER-CR,CRISPRCasFinder,CRT 3978029-3978063 35 NZ_CP007797 Azospirillum brasilense strain Az39 plasmid AbAZ39_p4, complete sequence 103415-103449 12 0.657
NZ_CP036278_4 4.3|3978029|35|NZ_CP036278|PILER-CR,CRISPRCasFinder,CRT 3978029-3978063 35 NZ_CP022366 Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence 179553-179587 12 0.657
NZ_CP036278_4 4.3|3978029|35|NZ_CP036278|PILER-CR,CRISPRCasFinder,CRT 3978029-3978063 35 NZ_CP032348 Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence 617733-617767 12 0.657

1. spacer 4.10|3978484|34|NZ_CP036278|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022220 (Bradyrhizobium guangxiense strain CCBAU 53363 plasmid p53363, complete sequence) position: , mismatch: 8, identity: 0.765

ctagatgctgttccgcacgtggatttcgaagtcg	CRISPR spacer
ctcgacttgcttccgcatgtggatttcgatgtcg	Protospacer
** **. .  *******.*********** ****

2. spacer 4.10|3978484|34|NZ_CP036278|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030052 (Bradyrhizobium guangdongense strain CCBAU 51649 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.765

ctagatgctgttccgcacgtggatttcgaagtcg	CRISPR spacer
ctcgacttgcttccgcatgtggatttcgatgtcg	Protospacer
** **. .  *******.*********** ****

3. spacer 4.10|3978484|34|NZ_CP036278|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030054 (Bradyrhizobium guangzhouense strain CCBAU 51670 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.765

ctagatgctgttccgcacgtggatttcgaagtcg	CRISPR spacer
ctcgacttgcttccgcatgtggatttcgatgtcg	Protospacer
** **. .  *******.*********** ****

4. spacer 5.1|5659100|39|NZ_CP036278|CRISPRCasFinder matches to NC_015951 (Streptomyces violaceusniger Tu 4113 plasmid pSTRVI01, complete sequence) position: , mismatch: 8, identity: 0.795

accacccatgccgccttcgccgccgaactcgccgccgcg	CRISPR spacer
ggacaccaggccgccttcgccgccgaagtcgccgccgag	Protospacer
.    *** ****************** ********* *

5. spacer 4.3|3978029|35|NZ_CP036278|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032324 (Azospirillum brasilense strain MTCC4035 plasmid p3, complete sequence) position: , mismatch: 12, identity: 0.657

aacgatgacgactggcatcgggctcagctcgcaac	CRISPR spacer
ctgctcgacgaccggcatcgggatcagctcgtcct	Protospacer
     .******.********* ********.  .

6. spacer 4.3|3978029|35|NZ_CP036278|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007797 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p4, complete sequence) position: , mismatch: 12, identity: 0.657

aacgatgacgactggcatcgggctcagctcgcaac	CRISPR spacer
ctgctcgacgaccggcatcgggatcagctcgtcct	Protospacer
     .******.********* ********.  .

7. spacer 4.3|3978029|35|NZ_CP036278|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022366 (Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence) position: , mismatch: 12, identity: 0.657

aacgatgacgactggcatcgggctcagctcgcaac	CRISPR spacer
ctgctcgacgaccggcatcgggatcagctcgtcct	Protospacer
     .******.********* ********.  .

8. spacer 4.3|3978029|35|NZ_CP036278|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032348 (Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence) position: , mismatch: 12, identity: 0.657

aacgatgacgactggcatcgggctcagctcgcaac	CRISPR spacer
ctgttcgacgaccggcatcgggatcagctcgtcct	Protospacer
     .******.********* ********.  .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 16896 : 95261 60 Wolbachia_phage(25.0%) transposase,integrase attL 26433:26492|attR 79603:80637
DBSCAN-SWA_2 293442 : 354293 53 Paenibacillus_phage(33.33%) transposase NA
DBSCAN-SWA_3 397402 : 455146 49 Bacillus_phage(16.67%) transposase,protease NA
DBSCAN-SWA_4 939698 : 975728 33 Paenibacillus_phage(25.0%) transposase,tRNA NA
DBSCAN-SWA_5 1600075 : 1661641 47 uncultured_Mediterranean_phage(22.22%) transposase,tRNA,protease NA
DBSCAN-SWA_6 2160453 : 2223363 49 Tetraselmis_virus(11.11%) transposase NA
DBSCAN-SWA_7 2351053 : 2415946 50 Pseudomonas_phage(33.33%) transposase,tRNA,protease,integrase attL 2350871:2350895|attR 2363894:2363918
DBSCAN-SWA_8 2767763 : 2820681 39 uncultured_Mediterranean_phage(33.33%) transposase,protease NA
DBSCAN-SWA_9 3250284 : 3395642 100 Tupanvirus(11.11%) transposase NA
DBSCAN-SWA_10 3478974 : 3575083 57 uncultured_Mediterranean_phage(42.86%) transposase,integrase attL 3526098:3526121|attR 3578837:3578860
DBSCAN-SWA_11 4088050 : 4139978 52 Vibrio_phage(20.0%) transposase,protease NA
DBSCAN-SWA_12 4371936 : 4426779 42 Enterobacteria_phage(50.0%) transposase,protease,integrase attL 4407453:4407497|attR 4418327:4418371
DBSCAN-SWA_13 4520924 : 4581379 58 Staphylococcus_phage(25.0%) transposase,protease NA
DBSCAN-SWA_14 4587285 : 4669262 59 Stx2-converting_phage(20.0%) transposase NA
DBSCAN-SWA_15 4721775 : 4801889 55 Wolbachia_phage(16.67%) transposase NA
DBSCAN-SWA_16 5886458 : 5951969 56 Tetraselmis_virus(33.33%) transposase,tRNA,protease NA
DBSCAN-SWA_17 6408248 : 6436704 19 Paenibacillus_phage(50.0%) transposase,tRNA,protease NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage