CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP036425	Planctomycetes bacterium KS4 chromosome, complete genome	2 crisprs	csa3,WYL,cas3,DEDDh,DinG	1	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP036425_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP036425_1

723770-723879

Orphan

Consensus_repeat	Method
CCGCACCAGCGGTGCGGGGCTTGAGTAGATGAGTTGTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP036425_1

>merge|NZ_CP036425|1|723770-723879|CRISPRCasFinder
TCGCACCAGCGGTGCGGGGCTTGAGTAGATGAGTTGTTTCACTAAAGCGTGTCGTTGGTAGGTTTAACATCCCCGCACCAGCGGTGCGGGGCTTGAGTAGATGAGTTGTT

>NZ_CP036425|1|1|723770-723879|CRISPRCasFinder
TCGCACCAGCGGTGCGGGGCTTGAGTAGATGAGTTGTT	TCACTAAAGCGTGTCGTTGGTAGGTTTAACATCC
CCGCACCAGCGGTGCGGGGCTTGAGTAGATGAGTTGTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP036425.1\|WP_145074367.1\|727929_728853_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP036425.1\|WP_145074357.1\|721280_722612_+\|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|236224
NZ_CP036425.1\|WP_145081376.1\|727076_727274_-\|preprotein-translocase-subunit-SecE	unknown	unknown	gnl\|CDD\|376355
NZ_CP036425.1\|WP_145074331.1\|712292_712937_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP036425.1\|WP_145074328.1\|710818_711919_-\|DNA-polymerase-III-subunit-beta	unknown	unknown	gnl\|CDD\|238082
NZ_CP036425.1\|WP_145074344.1\|715828_716599_+\|TIGR00730-family-Rossman-fold-protein	unknown	unknown	gnl\|CDD\|224527
NZ_CP036425.1\|WP_145074338.1\|714866_715085_+\|50S-ribosomal-protein-L35	unknown	unknown	gnl\|CDD\|234676
NZ_CP036425.1\|WP_145074359.1\|724006_724951_-\|putative-sulfate-exporter-family-transporter	unknown	unknown	gnl\|CDD\|225411
NZ_CP036425.1\|WP_145074365.1\|726314_727013_-\|transcription-termination/antitermination-factor-NusG	unknown	unknown	gnl\|CDD\|180161
NZ_CP036425.1\|WP_145081379.1\|732612_732837_+\|NifU-family-protein	unknown	unknown	gnl\|CDD\|376458
NZ_CP036425.1\|WP_145074354.1\|719982_720486_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP036425.1\|WP_145074362.1\|725151_726069_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176112
NZ_CP036425.1\|WP_145074370.1\|728911_729502_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|211400
NZ_CP036425.1\|WP_145074374.1\|729760_729940_-\|50S-ribosomal-protein-L33	unknown	unknown	gnl\|CDD\|273399
NZ_CP036425.1\|WP_145074334.1\|713087_714686_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP036425.1\|WP_145074348.1\|716738_718349_-\|DNA-recombination-protein-RmuC	unknown	unknown	gnl\|CDD\|376878
NZ_CP036425.1\|WP_145074351.1\|718441_719671_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340837
NZ_CP036425.1\|WP_145074377.1\|730203_731409_-\|elongation-factor-Tu	unknown	unknown	gnl\|CDD\|234596
NZ_CP036425.1\|WP_145074341.1\|715206_715566_+\|50S-ribosomal-protein-L20	unknown	unknown	gnl\|CDD\|179959
NZ_CP036425.1\|WP_145074371.1\|729559_729748_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP036425.1\|WP_145074377.1\|730203_731409_-\|elongation-factor-Tu	gnl\|CDD\|234596	PRK00049, PRK00049, elongation factor Tu; Reviewed.	0
NZ_CP036425.1\|WP_145074365.1\|726314_727013_-\|transcription-termination/antitermination-factor-NusG	gnl\|CDD\|180161	PRK05609, nusG, transcription antitermination protein NusG; Validated.	2.75502e-53
NZ_CP036425.1\|WP_145074331.1\|712292_712937_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.2435e-13
NZ_CP036425.1\|WP_145074328.1\|710818_711919_-\|DNA-polymerase-III-subunit-beta	gnl\|CDD\|238082	cd00140, beta_clamp, Beta clamp domain. The beta subunit (processivity factor) of DNA polymerase III holoenzyme, refered to as the beta clamp, forms a ring shaped dimer that encircles dsDNA (sliding clamp) in bacteria. The beta-clamp is structurally similar to the trimeric ring formed by PCNA (found in eukaryotes and archaea) and the processivity factor (found in bacteriophages T4 and RB69). This structural correspondence further substantiates the mechanistic connection between eukaryotic and prokaryotic DNA replication that has been suggested on biochemical grounds. .	1.00756e-123
NZ_CP036425.1\|WP_145074344.1\|715828_716599_+\|TIGR00730-family-Rossman-fold-protein	gnl\|CDD\|224527	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only].	1.37048e-59
NZ_CP036425.1\|WP_145074338.1\|714866_715085_+\|50S-ribosomal-protein-L35	gnl\|CDD\|234676	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed.	1.32036e-12
NZ_CP036425.1\|WP_145074359.1\|724006_724951_-\|putative-sulfate-exporter-family-transporter	gnl\|CDD\|225411	COG2855, COG2855, Predicted membrane protein [Function unknown].	5.09453e-50
NZ_CP036425.1\|WP_145081376.1\|727076_727274_-\|preprotein-translocase-subunit-SecE	gnl\|CDD\|376355	pfam00584, SecE, SecE/Sec61-gamma subunits of protein translocation complex. SecE is part of the SecYEG complex in bacteria which translocates proteins from the cytoplasm. In eukaryotes the complex, made from Sec61-gamma and Sec61-alpha translocates protein from the cytoplasm to the ER. Archaea have a similar complex.	3.55265e-08
NZ_CP036425.1\|WP_145081379.1\|732612_732837_+\|NifU-family-protein	gnl\|CDD\|376458	pfam01106, NifU, NifU-like domain. This is an alignment of the carboxy-terminal domain. This is the only common region between the NifU protein from nitrogen-fixing bacteria and rhodobacterial species. The biochemical function of NifU is unknown.	2.04563e-27
NZ_CP036425.1\|WP_145074357.1\|721280_722612_+\|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|236224	PRK08297, PRK08297, L-lysine aminotransferase; Provisional.	3.19843e-74
NZ_CP036425.1\|WP_145074362.1\|725151_726069_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176112	cd08420, PBP2_CysL_like, C-terminal substrate binding domain of LysR-type transcriptional regulator CysL, which activates the transcription of the cysJI operon encoding sulfite reductase, contains the type 2 periplasmic binding fold. CysL, also known as YwfK, is a regular of sulfur metabolism in Bacillus subtilis. Sulfur is required for the synthesis of proteins and essential cofactors in all living organism. Sulfur can be assimilated either from inorganic sources (sulfate and thiosulfate), or from organic sources (sulfate esters, sulfamates, and sulfonates). CysL activates the transcription of the cysJI operon encoding sulfite reductase, which reduces sulfite to sulfide. Both cysL mutant and cysJI mutant are unable to grow using sulfate or sulfite as the sulfur source. Like other LysR-type regulators, CysL also negatively regulates its own transcription. In Escherichia coli, three LysR-type activators are involved in the regulation of sulfur metabolism: CysB, Cbl and MetR. The topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.18669e-71
NZ_CP036425.1\|WP_145074370.1\|728911_729502_-\|hypothetical-protein	gnl\|CDD\|211400	cd11524, SYLF, The SYLF domain (also called DUF500), a novel lipid-binding module. The SYLF domain is named after SH3YL1, Ysc84p/Lsb4p, Lsb3p, and plant FYVE, which are proteins that contain it. It is also called DUF500 and is highly conserved from bacteria to mammals. Some members, such as SH3YL1, Ysc84p, and Lsb3p, which represent the best characterized members of the family, also contain an SH3 domain, while family members from plants and stramenopiles also contain a FYVE zinc finger domain. Other members only contain a stand-alone SYLF domain. The SYLF domain of SH3YL1 binds phosphoinositides with high affinity, while the N-terminal SYLF domains of both Ysc84p and Lsb3p have been shown to bind and bundle actin filaments, as well as bind liposomes with high affinity.	0.000220066
NZ_CP036425.1\|WP_145074374.1\|729760_729940_-\|50S-ribosomal-protein-L33	gnl\|CDD\|273399	TIGR01023, 50S_ribosomal_protein_L33, ribosomal protein L33, bacterial type. This model describes bacterial ribosomal protein L33 and its chloroplast and mitochondrial equivalents. [Protein synthesis, Ribosomal proteins: synthesis and modification].	1.27491e-07
NZ_CP036425.1\|WP_145074348.1\|716738_718349_-\|DNA-recombination-protein-RmuC	gnl\|CDD\|376878	pfam02646, RmuC, RmuC family. This family contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures.	2.9875e-99
NZ_CP036425.1\|WP_145074351.1\|718441_719671_-\|glycosyltransferase	gnl\|CDD\|340837	cd03808, GT4_CapM-like, capsular polysaccharide biosynthesis glycosyltransferase CapM and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. CapM in Staphylococcus aureus is required for the synthesis of type 1 capsular polysaccharides.	2.47223e-52
NZ_CP036425.1\|WP_145074341.1\|715206_715566_+\|50S-ribosomal-protein-L20	gnl\|CDD\|179959	PRK05185, rplT, 50S ribosomal protein L20; Provisional.	1.43979e-45

>NZ_CP036425.1|WP_145074357.1|721280_722612_+|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme
MTTQTTSLPGPKSQQVLDELQKYIIVDPHPYAVDLAASKGMYMATVDGDMLFDWGGYYGAKLLSHNHPGLFEEDYLKELTMVANHKIANPDFLTPQCLAYYRLMRGMAPKCMENPNLELYVVNSGAEAVENMLKYLINMHDAKRKAQGRTPGIRRFVYFDCAFHGRTVFALNITQLRHDPVMTKGFKGMVPANIEIPFPAIDNSQPEEENIQKTEQALNFLEAQLKLFGDEIVGIIFEPIQGAGGHRIALPDFYRKLSELAHKYDTYLGVDEVQTAGGQTGSMFCMDHFDLPYPPQAIAVAKKFGNGVLYMKESMTDEGVLDSTWGGSLVDMVRFSQEMKIIEREGLVEQVPEKEKHFVALLNDLCDKYPDIIYNVRGMGVYQGISFHNVADKGKFVGRMLHEQQTILIGAGTDTIRFRPPIDVTIEDMDLLHEKFEAVLSTF
>NZ_CP036425.1|WP_145074354.1|719982_720486_-|hypothetical-protein
MSVMGTGVAAGVAGTALQSQQQARKRDKKVREEQHSAEKVLEVFEAHIKGLEENDGDENSSARLHVEAQLRDHEDLIDDAPDKLVRQIREENKSAASDIAELSEEAKQIIQQQSPPLSPLPPDSQTAIAPKPHTTTPALPIEEKAKAALPTEQTQDERLYKHLDIQA
>NZ_CP036425.1|WP_145074351.1|718441_719671_-|glycosyltransferase
MRIAYLTNQYPKVSHSFIRREITSLEAQGFEVMRYSIRKTPDNLVDPLDTAELPKTKIILASGGLAMLWAVACVKMRHPIGWLKACLEVFRIGWRSERGLLIHLVYLMEATVLYRWTKKDKVQHVHVHFGTNPTTVAMLCKLLGGPTFSFTVHGPEEFDKPTGIHLNRKIVEAEFVVAISSFGKSQLYRWCHHDEWPKIKVIHCGVNANFLETPLRPIETSRKMVCVGRLCEQKGQLLLMQAAKRLRDERLDFELILAGDGEMRHEVEQLIKRYRLEEHVTITGWQSTGEIVELIEMSRVMVLPSFGEGLPVVIMEALALGRPVISTYVAGIPELVNEQNGWLIPAGDVGELAKAMREAFGSDDQKLEEMGRQGRKMVAEKHNAMQEARRLANLFQEYGGRKKSRVEKG
>NZ_CP036425.1|WP_145074348.1|716738_718349_-|DNA-recombination-protein-RmuC
MLQAGTIGGMNDPITIIMLVLFLVALGAAGVLYAKLMGAKKQSEISLGEKQAAAAQLAEQTQITENQAAELKTFEQQIADTKTSLALAEEKQKQLMRDNESLSERMGEEIEKQRRQFDELMLEKEESTKKHEQTLREEAAKREAQLKDQFEKLQKQAKESFESIAGQTLEKSNKAFLQLAKEQFKGEQKDAKAQLEKRKDAIKNLVDPIKEKLKAYDETIHVLERDRKQSHGELSATIKKMIEDQRMLKDETQKLVTALKRPEVRGQWGEMHLEKLLEMAGFREGLNYDKQVSTAGGKLRPDTVVHLTSNRDIVIDVKTPLDAYLSAIEAVSKADQDGHLRRHTKNILTQVDSLHKKDYQAQFERTPEFVVMFIPAESFLQPAVQERPTLLEDAFSKGIVIATPSTLIALLKTVAVGWREEALAENARKISEAGKELHKRISTCTGHLEKLGKAVGNTVKHFNQFTSSFESRVVTQARKFEDLEAAEPKKALPDQMDQIDALPREVKVIPSSVTDHVEAGNDQQMKILPENDQIDE
>NZ_CP036425.1|WP_145074344.1|715828_716599_+|TIGR00730-family-Rossman-fold-protein
MPLDRDVALNRETWRLFRIISEFVDGFEVMSEVGPAVSVFGSARTKPDDPVYQRAVECGKKIVDKDFAVITGGGPGVMEAANKGAFDAGGKSIGLNINLPMEQDPNPFQNYELSFRYFFVRKVMFVKYACGFIIFPGGFGTMDEVFEALTLIQTLKIEPFPVVLVGTDFWSGLLDWIKDTMRDRYKTISPEDIDLFHVTDDVDEAIEYVTSRFSQDQWDQRTEPTIPEPIIQQVKKGATGRVAPEVSQLVDQPNES
>NZ_CP036425.1|WP_145074341.1|715206_715566_+|50S-ribosomal-protein-L20
MPRTQKGAARRQAKVRVFKKAKGYRGSRRTQWRRVQEAVVRAGVMAYRDRRQVKREYRKLWIVRINAACKMRDINYSRFVQGLKAANIVLNRKMLSEIAIHDEAAFDAIVEKAKAALAA
>NZ_CP036425.1|WP_145074338.1|714866_715085_+|50S-ribosomal-protein-L35
MPKLKSHKGLLKRVKITAKGKVKWRKPFKGHLNSHMSGDKLRKLRGTALATKGDIKRLKIMLHRPLKAGDAE
>NZ_CP036425.1|WP_145074334.1|713087_714686_+|hypothetical-protein
MIALTVIAWSALIAPKMVAADPLAFFHDFTPLVQSNEAWSLQKGSVIASSDGKHAAGIVGEMLHSGVMMAVMCDQKILGRPAPRPLIAFAPKTDQLFRLYGQLNYFRINFPGIPVNTRVPEPISSVLFSPEGKQFAYVGKDANKRMIVHNGVVGPPMRRIDHHSIQFGKDTIAYAASDGSTWRMIIDRFVDTDYTAVRDSLAVSPQGNTAAYLAIRDGKWHVIRDLGLSKDGKRNRLVSQGFMLAKSPVIVSDDGSVTAAWVQIQGGIWQLAINGKINEAYATTKPGNIAIRQDGKQIAAAIKSADGRWQLIVDGKLIATCDGIGENSLRYTQSQKHLIAGMKWNGLWYLCVDGKLGEPSTAMMTDAYQESPNDTFLYAGRTSLGRWRVMQVDLAKNNQTVWRSSEYDGIQPGSLVISPDQQRVAFVGRYDSRACLVVGNQMLALRRWMGTPVFSPDSQHVAVLASKGQQFELLIDGKSVGEPFFAVLPSAQPAWDGADEVNVVIERQQHRFARLRVGAAHQSEETTVSGSE
>NZ_CP036425.1|WP_145074331.1|712292_712937_+|GNAT-family-N-acetyltransferase
MMTKIDSESINIRLYQPQDADALAGILVGAFRGKFQRLANLDEPSMRQMLLDAGFVGPHGHPGLWVAEKDNTVLAAMSLKWQQQKRGSEGSLRGILRVCLRHGFTRIGRFMIGMWLLEEQIQKQDCYIEYLAVSESAQGLGLGTQLLKKAQTEASALRAQLGFERISLHVAGGNTGAQRLYQRFGFTVERTIQSHLSRRILGESIWHFMSKSLD
>NZ_CP036425.1|WP_145074328.1|710818_711919_-|DNA-polymerase-III-subunit-beta
MKVICDRGALVESLNLVGGVIVSRTPKPVLSCIKVTANDGALTLSGTDMEVAVKLTTPRVEVAESGDMLVPSDKLLAIVRESIDATLTIEANDEAAKITGQDSKFTIYGHNIEDYPPIPEYDGDPDFEVSAEELHRLIAMTIFATARENSRYAINGVLVEREKNKLTVVATDGHRLALAKGMCTSHNDTPQSAIVPTKALNLLLRLFDDAEQTVSVKMKDGQIMFATEEATLSTNLVEGNFPPYADVIPKDGDKKVTIATDVLVSAVRRAALLTNEESKGVRMAFDQAGLTLSSRAPEMGEAEIKVEIDEYVGDEVEIGFNPQYLLDALKVADESQVHIDMKAPNKPGVLRTGPQFLYVIMPVNLQ
>NZ_CP036425.1|WP_145074359.1|724006_724951_-|putative-sulfate-exporter-family-transporter
MNHKTPTLWICLGLAVLIFIHSPAIALCTGVAISLIVGNSHSQFTANLAKYLLQAAVVFLGFGLQLNTILHVGLQSFSITAISITTTLALGLLLARSLKIDTHIALLTSSGTAICGGSAIAAMGPSIKANQHAIGVSLAVVFLLNAIALFIFPPIGKLVGLTQTQFGLWSALAIHDTSSVIGAASAYGPPALAIATTVKLTRALWIMPLSITCSKLVKNQNTQTNFPLFLLGFIAAASLRSYFPNQADFWQPLNALGQQLMILSLFFIGAGLTRQSLKIIRGKLLLMASLLWLITSSFSLILVKLNIYHLQPIT
>NZ_CP036425.1|WP_145074362.1|725151_726069_+|LysR-family-transcriptional-regulator
MMNQDVTIRQLEVFVVIAREGNLTRAAELLGMTQSAASMSLKQFENLLGYPVFSRVGRGLVLNDLGRQLLPKSQQILGQLEAMVSEVYDQEHVPTGHVVIGCSTTIGNYLLPSYLKEFLDEHDGITVSVHVGNTNEIARMVRRGDVDLGLIEGELVVHDLYEEDWMRDHLVVIVSPNHRLAGKKRVSQAMLSRESWVMREMGSGTRSTVSQAAARQGLQMGQVVEIGHTEAIKRAVETGLGLSCLSELAVKRELEDGRLAALPMDMGVDRWFRMICVDGASVTPLVGYVMQWMRDLAMELGEKRV
>NZ_CP036425.1|WP_145074365.1|726314_727013_-|transcription-termination/antitermination-factor-NusG
MSEQDNPTTDSPEEIVSEDATTDSNAPALPDGPKPGDDIAPEDEPMVYPGMNWFVLRVASNKEDYVRQTLLSKLKIEGFVHLVNRILVPTEKEKTIKAGKQKIIEKKLYPGYVFVEMRLENDGRIPQDVFFLIKETTGVGDFIGTAGRPSPMSIPEIEKMQAASKPAEEQPTVKMEFSPGDHVKITGGPFENMEATVDELLPDQGKVRVVVTIFGRATPVELEYWLIEKFEE
>NZ_CP036425.1|WP_145081376.1|727076_727274_-|preprotein-translocase-subunit-SecE
MNKPNVAEFMIATEAEMKKVNWPSRMEVYGSTIVVIGGTFLLAAILFLINISFAWIFTQIGVLQS
>NZ_CP036425.1|WP_145074367.1|727929_728853_+|hypothetical-protein
MEENTYDLATEPDEVVSDEVELEPLDFDLICVHCEYNLRGVLPDGDCPECGAAIADSLGERTLRFAPNEYLEVLKSGLYFLLLSFVLSLFLMVMGFAGGLASAGMGVGPKSIQLIMSVAMVLPLAAHVFGALKTVTVHQYNADAPRAQKTAKVGTIIYAATALFSMVLGVVLVASSTMPTAGVAIVSGVVDVVSGIASVVAYYSLIYYICKFQTGMPFSPHMKYPWLPKFVLITYIVPIVIGLLALLFLGVSAATGSGGLFIGLGVVMGILGLAAGVLFLLSAIFSIMLYIRLRRTIADIQSVQGAF
>NZ_CP036425.1|WP_145074370.1|728911_729502_-|hypothetical-protein
MRLSQLKAQYLFTLALFVSIAGCTMHPKGDTPEQQRESILQMQQETLSRLYEQYPETREQIQNASGYGVFSSVGTSIIIANFGNGYGVIHDNTKDTDRFMRVERYGGGIGVGQREYNMVMIFNNVDILDDIQYGGWTFGAGGSAVFKEKDKEGTVGSGNEVLSDIEIYEMSDSGFMLTGNVSGMTFRKAVLLNGPR
>NZ_CP036425.1|WP_145074371.1|729559_729748_+|hypothetical-protein
MRNRMHHVYAEIQDRHKKTVNFLGFTAWFLYFAAKGVGDDVIREFLCNTAAKKRRDAESVYP
>NZ_CP036425.1|WP_145074374.1|729760_729940_-|50S-ribosomal-protein-L33
MAKKAGAVEYVWLQCTECKDLNYRTPVNVKGGIDDKVKAGFKKYCPRERKHILHKIKRK
>NZ_CP036425.1|WP_145074377.1|730203_731409_-|elongation-factor-Tu
MAKGVYERTKPHVNVGTIGHIDHGKTTLTAAITAVQGAKGLAEHKPYDEVAKASASDGRRDATKIVTIATSHVEYESDNRHYAHVDCPGHADFVKNMITGAAQMDGAILVVAADDGPMPQTREHVLLARQVNVPKLVVFLNKVDLVDDEELLDLVELEVQELLAKYDFEEDTPIVRGAAFPALQNPSDEAASACIGDLMNAIDTWIPEPERETDKPFLMSIEDVFSIKGRGTVATGRIDRGMVKIGDKVEIVGLGETKETTVTGVEMFNKQMEEGQAGDNVGCLLRGIEKTEIERGQVLAAPKTITPHKVFEGEVYVLTKEEGGRHSPFFNGYKPQFYFRTTDVTGGIELQGGAEMCMPGDNINMKVDLGEKPIAMEEGLRFAVREGGRTVGAGVITKVIE
>NZ_CP036425.1|WP_145081379.1|732612_732837_+|NifU-family-protein
MHDRVEEIIERIRPAIQMDGGDVELVRITDENVVLVRLHGACVGCPSANMTLQMGIERNVREKVPEIVGVEQVP

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Crispr_ID: NZ_CP036425_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP036425_2

4073613-4073741

Orphan

Consensus_repeat	Method
CCCTGTTCGTATCACACAACTTCCAACTCCGCCCCTGACCTGCAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP036425_2

>merge|NZ_CP036425|2|4073613-4073741|CRISPRCasFinder
CCCTGTTCGTATCACACAACTTCCAACTCCGCCCCTGACCTGCAGCGCACCACAATCATCCTCTTCATCAACTCCGCCCTTATCCCTGTTCGCATCACACAACTTCCAACTCCGCCCCTGACCTGCAGC

>NZ_CP036425|2|2|4073613-4073741|CRISPRCasFinder
CCCTGTTCGTATCACACAACTTCCAACTCCGCCCCTGACCTGCAGC	GCACCACAATCATCCTCTTCATCAACTCCGCCCTTAT
CCCTGTTCGCATCACACAACTTCCAACTCCGCCCCTGACCTGCAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP036425.1\|WP_145080818.1\|4072115_4073600_+\|undecaprenyl-phosphate-galactose-phosphotransferase-WbaP	unknown	unknown	gnl\|CDD\|274395
NZ_CP036425.1\|WP_145080802.1\|4065722_4067675_-\|M20/M25/M40-family-metallo-hydrolase	unknown	unknown	gnl\|CDD\|349913
NZ_CP036425.1\|WP_145080811.1\|4069863_4070262_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP036425.1\|WP_145080835.1\|4085194_4086715_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP036425.1\|WP_145080829.1\|4078367_4079729_+\|N-succinylarginine-dihydrolase	unknown	unknown	gnl\|CDD\|377441
NZ_CP036425.1\|WP_145080839.1\|4087822_4088173_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP036425.1\|WP_145080814.1\|4070282_4071242_-\|tyrosine-recombinase	unknown	unknown	gnl\|CDD\|274043
NZ_CP036425.1\|WP_145080827.1\|4077264_4078353_+\|arginine-N-succinyltransferase	unknown	unknown	gnl\|CDD\|377426
NZ_CP036425.1\|WP_145080824.1\|4075649_4077059_+\|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|99735
NZ_CP036425.1\|WP_145080793.1\|4063640_4064477_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238264
NZ_CP036425.1\|WP_145080796.1\|4064526_4064994_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|109608
NZ_CP036425.1\|WP_145081791.1\|4096546_4097296_-\|7-cyano-7-deazaguanine-synthase-QueC	unknown	unknown	gnl\|CDD\|223676
NZ_CP036425.1\|WP_145080805.1\|4067869_4068469_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP036425.1\|WP_145080816.1\|4071153_4071483_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP036425.1\|WP_145080842.1\|4088566_4091923_-\|autotransporter-domain-containing-protein	unknown	unknown	gnl\|CDD\|377133
NZ_CP036425.1\|WP_145080846.1\|4092665_4096310_-\|autotransporter-domain-containing-protein	unknown	unknown	gnl\|CDD\|377133
NZ_CP036425.1\|WP_145080799.1\|4065019_4065514_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|215403
NZ_CP036425.1\|WP_145080808.1\|4068767_4069733_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP036425.1\|WP_145080821.1\|4074213_4075434_+\|hydrolase	unknown	unknown	gnl\|CDD\|235995
NZ_CP036425.1\|WP_145080832.1\|4079710_4082350_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|187676

Protein	Function_ID	Function_description	E-value
NZ_CP036425.1\|WP_145080818.1\|4072115_4073600_+\|undecaprenyl-phosphate-galactose-phosphotransferase-WbaP	gnl\|CDD\|274395	TIGR03022, WbaP_sugtrans, Undecaprenyl-phosphate galactose phosphotransferase, WbaP. The WbaP (formerly RfbP) protein has been characterized as the first enzyme in O-antigen biosynthesis in Salmonella typhimurium. The enzyme transfers galactose from UDP-galactose to a polyprenyl carrier (utilizing the highly conserved C-terminal sugar transferase domain, pfam02397) a reaction which takes place at the cytoplasmic face of the inner membrane. The N-terminal hydrophobic domain is then believed to facilitate the "flippase" function of transferring the liposaccharide unit from the cytoplasmic face to the periplasmic face of the inner membrane. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.	3.4618e-150
NZ_CP036425.1\|WP_145080829.1\|4078367_4079729_+\|N-succinylarginine-dihydrolase	gnl\|CDD\|377441	pfam04996, AstB, Succinylarginine dihydrolase. This enzyme transforms N(2)-succinylglutamate into succinate and glutamate. This is the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway.	0
NZ_CP036425.1\|WP_145080802.1\|4065722_4067675_-\|M20/M25/M40-family-metallo-hydrolase	gnl\|CDD\|349913	cd05663, M28_like_PA_PDZ_associated, M28 Zn-peptidase containing a protease-associated (PA) domain insert and associated with a PDZ domain. Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions. This subfamily is composed of uncharacterized proteins, many of which contain a protease-associated (PA) domain insert which may participate in substrate binding and/or promote conformational changes, influencing the stability and accessibility of the site to substrate. Proteins in this subfamily are also associated with the PDZ domain, a widespread protein module that has been recruited to serve multiple functions during the course of evolution.	1.06559e-56
NZ_CP036425.1\|WP_145080814.1\|4070282_4071242_-\|tyrosine-recombinase	gnl\|CDD\|274043	TIGR02225, Tyrosine_recombinase_XerD, tyrosine recombinase XerD. The phage integrase family describes a number of recombinases with tyrosine active sites that transiently bind covalently to DNA. Many are associated with mobile DNA elements, including phage, transposons, and phase variation loci. This model represents XerD, one of two closely related chromosomal proteins along with XerC (TIGR02224). XerC and XerD are site-specific recombinases which help resolve chromosome dimers to monomers for cell division after DNA replication. In species with a large chromosome and with homologs of XerD on other replicons, the chomosomal copy was preferred for building this model. This model does not detect all XerD, as some apparent XerD examples score below the trusted and noise cutoff scores. XerC and XerD interact with cell division protein FtsK. [DNA metabolism, DNA replication, recombination, and repair].	1.4838e-124
NZ_CP036425.1\|WP_145081791.1\|4096546_4097296_-\|7-cyano-7-deazaguanine-synthase-QueC	gnl\|CDD\|223676	COG0603, COG0603, Predicted PP-loop superfamily ATPase [General function prediction only].	1.56833e-92
NZ_CP036425.1\|WP_145080827.1\|4077264_4078353_+\|arginine-N-succinyltransferase	gnl\|CDD\|377426	pfam04958, AstA, Arginine N-succinyltransferase beta subunit. Arginine N-succinyltransferase EC:2.3.1.109 catalyzes the transfer of succinyl-CoA to arginine to produce succinyl-arginine. This is the first step in arginine catabolism by the arginine succinyltransferase pathway.	8.47793e-122
NZ_CP036425.1\|WP_145080793.1\|4063640_4064477_+\|hypothetical-protein	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	9.30084e-40
NZ_CP036425.1\|WP_145080796.1\|4064526_4064994_+\|hypothetical-protein	gnl\|CDD\|109608	pfam00558, Vpu, Vpu protein. The Vpu protein contains an N-terminal transmembrane spanning region and a C-terminal cytoplasmic region. The HIV-1 Vpu protein stimulates virus production by enhancing the release of viral particles from infected cells. The VPU protein binds specifically to CD4.	0.00315927
NZ_CP036425.1\|WP_145080824.1\|4075649_4077059_+\|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|99735	cd00610, OAT_like, Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.	1.14186e-65
NZ_CP036425.1\|WP_145080842.1\|4088566_4091923_-\|autotransporter-domain-containing-protein	gnl\|CDD\|377133	pfam03797, Autotransporter, Autotransporter beta-domain. Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type V pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C-terminus of the proteins it occurs in. The N-terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different protease is used and in some cases no cleavage occurs.	5.47766e-31
NZ_CP036425.1\|WP_145080846.1\|4092665_4096310_-\|autotransporter-domain-containing-protein	gnl\|CDD\|377133	pfam03797, Autotransporter, Autotransporter beta-domain. Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type V pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C-terminus of the proteins it occurs in. The N-terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different protease is used and in some cases no cleavage occurs.	3.10075e-32
NZ_CP036425.1\|WP_145080799.1\|4065019_4065514_-\|hypothetical-protein	gnl\|CDD\|215403	PLN02757, PLN02757, sirohydrochlorine ferrochelatase.	1.75144e-79
NZ_CP036425.1\|WP_145080821.1\|4074213_4075434_+\|hydrolase	gnl\|CDD\|235995	PRK07338, PRK07338, hydrolase.	2.09712e-162
NZ_CP036425.1\|WP_145080832.1\|4079710_4082350_-\|hypothetical-protein	gnl\|CDD\|187676	cd09618, CBM9_like_2, DOMON-like type 9 carbohydrate binding module. Family 9 carbohydrate-binding modules (CBM9) play a role in the microbial degradation of cellulose and hemicellulose (materials found in plants). The domain has previously been called cellulose-binding domain. The polysaccharide binding sites of CBMs with available 3D structure have been found to be either flat surfaces with interactions formed by predominantly aromatic residues (tryptophan and tyrosine), or extended shallow grooves. CBM9 domains found in this uncharacterized subfamily are typically found at the N-terminus of longer proteins that lack additional annotation with domain footprints.	2.22244e-13

>NZ_CP036425.1|WP_145080818.1|4072115_4073600_+|undecaprenyl-phosphate-galactose-phosphotransferase-WbaP
MSETTQTLENKSFTLPPPQHNPALTLSSSASPRLTILILILTDAFALLFAAILALIIRTPFQNGVSIPSYLPIVPIITLCIPAFALARLYPGIPLTPARELRTITLTISLFALTLAALTFLLKEGPTYSRAMLLLSWMFAIILVPFARAMTRSIFSHRPFWGSPAVIIGSGTTARTLLRSLIHRPEIGLKPIAIMRSPYSFSARSIFQTIPVITDLSPAINNPKLLRRATAVIAFADFDSDQYEKILNITSQNFRSTILLPAIQHHASLWVTTTDIDGQLSLKIRHHLINPAKRLTKNILETILILIITPILFPIFSLICILIKLDSKGPIFFFQTRIGKHGLPFQMIKFRTMQTDSHHRLEEYLNLNPSKRIEWNRTHKLQHDPRITRIGRFLRKTSLDELPQLINVILSDMAIVGPRPIFPKDVKRYQADFDTYTLVRPGITGMWQTHGRNTLTYPERVQLDLYYVRNWSIWLDLHILIKTIPTVLFGKGAY
>NZ_CP036425.1|WP_145080816.1|4071153_4071483_-|hypothetical-protein
MPRSKEESSQCPFINAKDSRCASRFNLAHLSEAFHICLNNPMTCPTYQKMTAEQSRKEKAVVEVRTQSITIQGKACGEYRDARFGGGRVGCMSGSGYGGGYGSLRATGS
>NZ_CP036425.1|WP_145080814.1|4070282_4071242_-|tyrosine-recombinase
MPGLVGDGSAVCQAAVMAVDTVPFEQPVREFLEYCRLECGFAQATLMAYGADLYDLQNWLLDRGIGTWAKLTLEMIAEHLAWLHEKQRLVDTSIARHVATIRVFSRFMSVRGYVEVDPAEKMVQPKVWRRLPNVLGQEQIEALLSAPNREDVLGVRDVALMELLYASGLRASELSNMKERDLHWDMGAARVLGKGNKERVVPIGDAAMRALGEYVMEARPKLLGGKKHQRHVFLSRTGLPITRVVVWQIIKRHAKAAGLADVHPHTLRHSCATHLLAGGADLRVVQEVLGHSNIATTELYTHVDRSRLKEVVTRFHPRA
>NZ_CP036425.1|WP_145080811.1|4069863_4070262_+|hypothetical-protein
MMRSKQKLLLSITTLVTSAFAFGCASNQPTQEEYADAEQRIAEIREAQRRGFYRYEYDSMPGLAIEYQVFNNSFRARPDMPLGYEDMYRTDMEIEETEDPIKRQEEELLREEEAEKVEGEHESSPGTDDRRQ
>NZ_CP036425.1|WP_145080808.1|4068767_4069733_+|hypothetical-protein
MNKPITLLLTLLTILTAYSSSLIAQDQQATYDLRPATWKANQTTRYEFWNRRDRNINMSFAGDSRDSTDAYESTGETTWIVDRVNADGSSTCRMKIDWLKITLIGPTGDEVAVDSRENNPAPYEEYGNLLKAMCSAWLTYEIGADGSVNSVSGMDQMVSQVDNPDDLPTELDFIESASDLAQLIGPPPALVIGGSWQHDFRWSYNVGLPGVKAFMNYDMDFTLTNVEDIETIPVATVDGTGSMTLEIDQASIPAEAPPVNIRLINSSLQSQVLFDLTRSEAVGRNLSQDETINITISTPNGELLQVIQTKHQGQVLRLSEE
>NZ_CP036425.1|WP_145080805.1|4067869_4068469_+|hypothetical-protein
MLTTLSVTVKTMFLENPWPLAASMGVCGFAFLVMASRQGNKRYLSTGITAFILAAITITMAYVVTTPREIILNNTRLLVAATSPLEMKQVDHYIDPYAVLYGPNKTAWLTYDQIQNILPTVVSKHSIKEQSIRLLNAQETNDNTVVAWFGLSSKIAQGFPVRTDWQLVWTRLPDNQWKVIEIHFLKFQGKSPTDGIWNQ
>NZ_CP036425.1|WP_145080802.1|4065722_4067675_-|M20/M25/M40-family-metallo-hydrolase
MITFHLISVYKTRLYFCAIGLMLALSVGCVSQVSVGTQRIKVASASDTERYQAMVDYLASDELQGRGVGYSGLVKARDYLIVNLEEMAVRPGIINEQAASNQYTQRLSIRMPVVAKEKSLRVTQSHEVINEIVFDSNKMNVLGLSSSQSFVNKRVVFVGYGIVADAYEYDSYGDVDVDDAVVVMFRYEPMTERKSQWAKDLKIKVPWTEHASIPQKVKQAEGRGASAVVIVDPPSFRYSSLIPTDASDYGEKAVSIPVYHMKAELFEQMLELEGKQKVMMKRLESKANRGEDEPVEFQQIKLSGTVVVDRQNGQVDNVIGIVDGAGDLASEVVVVGAHYDHLGYGEVASRSGIHAIHNGADDNASGSALVMMLAEKYQQYVLEHQTDRRRTVVFTFFSAEERGLWGSRYMVNHLDQLALSEGFKVVAMMNYDMVGRIRENAIEMFESQTCSAWQDIAVEANHKIGFDLKIRENCPGMSDHNSFIGQQIPAVLFFSGMHEDYHRVSDTSDKINAEGAAKLLALSQLMLSDLVTRDSGLAYRDTESDSDSGLVNGSFLNWYTADVTAMRRRDLKAKETNASGFKIYWTPISKLLVSLRLKQGDQIVQINGVQIKDMNRLMTVIQGLDTGKQIELFVVRGQQMLKLTFTLKNL
>NZ_CP036425.1|WP_145080799.1|4065019_4065514_-|hypothetical-protein
MKCMNQTPTELNPNDHDLAHTGIIIVDHGSRREASNKMLEAFVEAFAEETEYSIVEPAHMELAEPSIETAFDKCIARGAKKVLVCPYFLLPGKHWHQDIPDLTKAAAKKYPDVSFVVTAPIGLHPMMRDVISSRIEHCLSHIEGAADECESCKGTGRCKLQKPE
>NZ_CP036425.1|WP_145080796.1|4064526_4064994_+|hypothetical-protein
MINSITLPVAMTFIGQQTADPTRDHVFKEMANRYSIGVFWIVILGVLGVVSIVCLTFLWHRYRKRMNRLEQKINERRESTSPLASAWESAADRMDDKKVMAEFGETDAPPPQGAEIDDALEAEYDESDWDQPDWDPDNEDKGNLDDDPKDGPRYW
>NZ_CP036425.1|WP_145080793.1|4063640_4064477_+|hypothetical-protein
MLHMLELQRRVRMCVTDGSAAGGVLPPEATEKFNTWGGWPAMRGLSRWYEVEVICKGDADETGYFINISEIDQAVREQTLPYLQDMISGPGDPASAPIGEVVRGMINGLQPLLQEAVAEVRLHLTPMLSMGIESENMDKVTIRHEYEFSAAHRLHCDSLSDEANREVFGKCNNPEGHGHNYVVQVAVAMPIDPMGDVAHVEELDELVDTVVIKPFDHKHLNKDTEEFAALNPTVENITKMVWEKLTGKVDDLGSMPGAELVEVKVWETQKTSCVYRGE
>NZ_CP036425.1|WP_145080821.1|4074213_4075434_+|hydrolase
MNALESNTAQWIDSQQQSMVQQLCALAEINSHTYNIPGINAVAELVTQFAAPLELEASTLAPKPIPNIDSDGNFTQTPVAPILKFTKRPNAPIQALLMIHLDTVYPADHPFQSLTWIDDNTLNGPGVLDAKGGIITMLTALQAFEQSPHAQNLGYTILFNTDEEVGSLGSVDHIHQHAKQADFALVYEPSLPNGHLVSTRKGSGNFSVVIHGQAAHAGRDFFAGQNALSQAAKLATQLETLINPQNETTLNIGYIHGGGPVNVVPDKAVLKFNARIHELETQNQLTAQIDHLIEQINQTPGFSATLHGSFYNPPKQQTTALAQMMHDIQTLAKQLNIDVQYQSSGGVCDGNKIAAVGTPVIDTLGPTGNHMHNTKEFVLINTLPQRAKLSAAILAAYASQQLPCPQ
>NZ_CP036425.1|WP_145080824.1|4075649_4077059_+|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme
MTNTANKPATAANKLMLDPRVTQAKALLHEALADHAAPLNNVRPPVEELKIPYEQALEHTAALRGGGLFFPYLGSGLGNGPFVELGDGSVKLDFITGIGVHFYGHNHPDLVDTSVDAALQDTIMQGNLQQNLDTRTLLDLLMQLAKLNPESNLQHCFMTSSGSMANDNAFKLALQKNHPASRILAFEHNFCGRTIAMSSVTDKAAYRVGLPTTLNVDYVPYFDETDPEGSTALAVKTLKRHLKRYPDRYALMKFEIIQGEGGYNLASRDFHVQLMEICKENNIAVFADEIQTFGRTTKPFAFQHYNLDKYIDIVNIGKLSQVCATFFTEQYKPKPGLLSQTFTSSGAQIRAGIRIADEFLNGDLFGDSGKIMTLSNLMRDKLQALADKHPGKIAGPFGLGAMIAFTPYDGSLDKAKQLMMNLYNDGLLCFLAGGNPTWRLRMLPPIPAIDESHINLAIDLLDNALSKMD
>NZ_CP036425.1|WP_145080827.1|4077264_4078353_+|arginine-N-succinyltransferase
MHIIRPITKNDGEAVLKLASQAGYGFTSLLPQKSYIHERIEASIHGKNLLFVLEDLSSNTVIGTSAIKPSAGKPKKPFYSFRIETAFRKSETLGVNHAVRTLHLYPQFKGPTELGSLMILQQHRNSRIGLGRLASLSRFLYIAESPSHFNHNIVAEIRGFSDAHGHSPFWDAIGKHFFKTDFVSADRLSAIDKQFIADLMPIYPIYIPLLPQTARNVIAKPHPQALPAQKMLLSEGFRFIDLVDIFDAGPSMQASRDTIRTVRESAHFTIKDIAPVSSPELLGRHLDQPDSPRKNNTLIIATFTPTFIATLTQAQIIKGKRGIRIPLETAQALNIDIGDTVRLAPIYPAPSNLLLDAHPPTI
>NZ_CP036425.1|WP_145080829.1|4078367_4079729_+|N-succinylarginine-dihydrolase
MSNSHPIIEASLEGLIGPTHNYAGLSPGNVASQSNKDLTSHPKTAALQALNKAKFLLDLGIPIIVCPPQPRPRTDILRTLGFLGTDKQIITEAHKSSPHLLAAIYSASAMWTANAATVTPSPDTTDQRAYFTPANLTSNFHRSLETAHTARILKQIFFNPDHFHHYPPLPSCPALSDEGAANHTRLCADYTSPGLHLFTYNTTTNPHHTQTGTSKLTISEGTDRQSLEASHAVARQHHLTPERTLFIQQNPKAVNAGVFHNDVIATGNRNLFLYHEAAYFNPDINQTITNAYQNLSNQPLHMLQISEELLPLNDAIASYFFNSQLISPKSAPHSQILIAPQEVKQTTTAHALVNQLLDDKILSSAHYLDVRQSMQNGGGPACLRLRVPLSDHQFNHLHTPAILTPALYQTLTNIITDHYPETLSPDDLADPSLLTSALNAITHIYNALYLSIS
>NZ_CP036425.1|WP_145080832.1|4079710_4082350_-|hypothetical-protein
MKKLLKVTAVLGGVVMLNVAGCGGEERDVREEAEAIRRTVQQIGIDADEDVLGMHPTNLWKMRYRDRQIDLVERMEAGEGRVRVAIDGRVEGDAGWEGVVWREGFWVYQEDVRVDEKRVEMQKQGADEDVWAGTKYKIGFDEEYVYVGVRCDEPNVEGIRASKDVRDGEINVDDCVELMLGKPGSWGEYFHFIVNSKGVVFDDSRTQGGYMGNKAWDCIGLEVASEVGEDWWGVEMAIPISSLGINESDIERQDQWQGVWKLNVARERYAGGAWEVSSSSQLKRFLEPRQYSLIGFRGLDLKAYWCGFEEEPEARRWVKKEWLINKVGARNQVRVGMRLDEGRDDRQYVVYGRLLREREGSNGGTQAGEWVRLDYEDGEWAGWFDLKEGEVGRRVEIEIRCEAGDGDDRLSDRVVRRTFVNVKGGRGAFAIQTKDVLYPDDFGTQLDWEVKNHVWGIEDDRNFEFAFELSDAAGEEVKAKWFKDDGAWRYLYLFADGDEKWQERVIEGRLLYKGREVAMEQRRVRWLDGERSLVRMRGRQLEVDGERFYPFGWYSVPEADWEEAKETGCNTLMDYEIAMDDLGEQKRKLDKLAGLGMKVVIYVYPDREMVSESALQRALSQEEERGIRELVARLRDHEALLAWYIADEPELKSARVDRLRKVREIVREEDPYHPSILVNNTAAGLREYGACADILMPDPYPFFLKNGGSRFGIGVVNEMIGLAWQEKRSSSVWAREEGVWVVPQGFSMADFGNTDNREPEYWEMRNMFYQSISRGAAGQLWWAWRYGKKYEGVKLGMYELGREFEKLRPILEGKGIATKFWGNMSAVGCQYMQGNRVLLEVRVNLNKKEQVIDRELYEPLETKVWFDEAWLKDNQLIDR
>NZ_CP036425.1|WP_145080835.1|4085194_4086715_-|hypothetical-protein
MNEVDPRYIIRPNQIIQKNIAAFTIPIITTQEGEPIGQWQLYQQFPDGSREVSKLDTTLQTPAGTTYYFHPFPSPPAIAKSSGWSAKARKQWLEAGTQNDPTETFNTVHNLITRYIDFNHDQAEGIVNTLTLWIMHTHIYGAWEATPYLHINGPAGSGKSRVFEVLNRLVYRPMNVSNTTPAPLFRQLDEQGGTLLLDEAERMQERTPEVSELRSILLAGYKKDGKAARCEGDNHASREFNVYSPKALACIEGLPHALSTRCIRIMMFRAGKDSQCYKRRIDEQAKHWQQARDKLHTLTLEQGVVWLQLAKRTDVCPNLHGRDYELWQPLLSLASFFESQGVADLHAGVLDFAYYNHEQGKQDKATDIDATLLRIAARMILTQTIAPTAQEIINCARLDEAETFDRITPRKTASILKAYGLTTQKSNGKRIYNNISRKDFQRIQQNYGLDLDLPKQETQQQTITQQDLDLLQVTPNTEYIPALETCPTVPSVLAREAIGHEGYVGY
>NZ_CP036425.1|WP_145080839.1|4087822_4088173_-|hypothetical-protein
MLHLVFCPNCGENVKIHCDNVPNPFQQIHADQITRILNAPPAKPASSSLSPATISHLKLLFLLDMIGDDLPDLDNLPELPTHTANFIDRAGEAEIKHILFQAVGRWDTLKELIPPN
>NZ_CP036425.1|WP_145080842.1|4088566_4091923_-|autotransporter-domain-containing-protein
MESLMTNSPVTFKTSYLLAAFCSMSLTAPAFAGFVATAPLDIEYQIGSGTEPYDINVGGGAYTVDIGADIVGAGPNGSHLVDLTNPAISDWLKTDQPTTVNFDGKVAINAIKPGFYAIYTTSTDDLNLNFSDTALLQVDSTGAHTYAIFSSQGNVNLNDFAGDLTVNSGDSSGQSFANGIYAQNDIIADSITTDSSINVSGTGTNVYGIRSDSGNIDITNAFAGDITVDAGANGSNESYAYGLYANGDINIGSVSSDSHIDITGTGNFVFGMVSGGNISIANPFAGDITVNAGDSSGQSFANGLYTTLNINLDSVTSDSQIVVTGTGNSVYGFNALLGDINITNDFAGDLIVNAGQNGSGESAAYGLYAWNDISIGSVNSGSQILVTGTGHGVYGLYASNGHIDITNAFAGDITVDAGANGSNESFAYGLYANGDINIGSVASDSHIDVTGTGSDVYGLYSNSGNINIIGNFAGTIAAQGTDNVYGIFAPSLSIQNITGTISATATDIDGHAAAITTESWDGSAWSGSAASDDTVTLSSGANIIGDIRLGDNDNTAGPGDLPTDDTLTLQGAGTFNHNLYGIETLVIQQDIGTTSATDEVWTLNLLDAADDGSQQLNTLTTIDIQHGLLATNGNLQTENLNVETGGGLFFNLHSADGTTDTINAGNVTFAEGAIIRTQLDGVLIEDTTFTLVTTDTGITIDSSGDVADLINVLDTALIDYKGKLSLDGNNLLIEASTFADLQEFANGTAFNAATSLQNALDQLADGDDLEDILDQFQDMTEDELREELNKIGPQSSLTTANATTSAAISVVGKFTGRSSGLANAATKADSDTYALLLSGPSLRDQDGYEVWTSAFGSYTDQDDQDNILGYRSTAVGSLVGIDRQSENALIGFALGYANADVDTHNSNSSTKLDALTAGLYFAYQPSKFKYEAGSIYTLGMSDYERETALNRTAEANDVLSHSFTNYIGTSYQMNFNDGRISFTPNAQLAYTYFTQESYSESNAGSLGLDVDSFSSDIVTATVGAKAEYQYNDQLTFNGLLLYKYDFTNDAPTVESTFQAFGSTPFQTTGIEADKVAIEFGAGFDYQISDKLKASLDYSYEHRSSLKTQNLTVGLNLLF
>NZ_CP036425.1|WP_145080846.1|4092665_4096310_-|autotransporter-domain-containing-protein
MNNICRYSTATLLSAFTVMSTGLGLCQSINAAPYNAEIKQHIIEDSTTNALACGSFDSDGVNATFTNESFMYAKNTGRGDAYGIQSLGIVNANAILGEIYTESGTSETQYPPSYGSYSYYDSMGIYCSKDVSIAGDVSAKITAIIKGVNSHQNNKIRAAGIFSNGDIVMGDITQDATIVVSADVEYGVGNGIYAKDTMIIGDVAGQIYVKTGHHGRGLSASDNLILGDISGSIIVDDSGIGATGVSSGEVLTVGNITGTIATRSSGSAHGLSSYKAQSIGDISGIIESVSGAGYAARGIYTSNSDLQIGKDNGSDDTVGIRGTIKAISGDLGTPIGDNPSRAYGLHSNGNLTVDGDITGTISAYAAGQPKEDSGIVLPPWTGGGVIIIGGGGTVVYNGTGNSISIGSIGVDGSIMTIDGNASIGLSEYTLTFSAAEETPPVTQVTATLTTAEPVAISAAIYSSKDDGTINLNNITEDATLIAIAEGLNSEAYGILLQSENDNDDSGSVTVGNIDGQIVVGANRKAYGILSEDHLIIGNVSGVISVQANGYSNSGNSLELPGATENVFGAAAGIVSSGDFSIGEISGAIRVHGKDAAIGIASYGTLDTVVSGTIAATTTDGNFNYAINSHTGNDRLTLKDGAVVIGDIDLGSQDVGEADILTLEGYGTYNDTLHNIEHIKVNSAVSLIVGFDDLDAVQKQAAIISSIHETNTWKLSKKAAVDQLDVYTGYLKVDGGVEISGALNLASNAGMIFELTDDATVTAQSINLADGSRLITQQGEAILEQKIYTILDAENVITDNGAIIAIKDSALIDYEIYDASPSDKKQIIATPTSLDSVTSSSNDGIATSLQAALNNASVGQEIKDYVAHLQTLSNAEEIDKVVRKLSPQASIGVADATSNVSTGVTNQLTSRTSSASRSSSLAQSGLSNEYPILLAGPALRDKDGYQAWASTFGSLSKQDDDGLINGYKSKALGTLVGLDRQGENVLVGFALGYAYADIDTNNSNSSTELDALTAGFYAAYQSSAIKYEAGSIYTLGMSDFEREVPLNQTAEADDVLSHTFTNYIGASYEMRLQDDRISLSPNAQFSYTYFTQESYSESGVGSLGLDVDSFNNDIITATVGIKSQYRHSDQLTLNSSLLYKYDLVNDAPTVESSFQSVGSTPFKTTGLETDKNAIELGAGLDYQISDRFKVSCDYSYEHRSSLKTQNLTLGLNLLF
>NZ_CP036425.1|WP_145081791.1|4096546_4097296_-|7-cyano-7-deazaguanine-synthase-QueC
MSTPNQTQITARPKTVLTFSGGLDSTTLLYYLQAEGHDTLTLSIDYGQRHKVELDYAERILQHLGIQHHKTIDLHCMNDLMQGSSLTQPDIDVPLGHYEEESMKQTVVPNRNMIILSLAAGWAISNQATYIAYAAHAGDHAIYPDCRPEFADACAKAIELADWHIVKLIRPFVDKTKGEIVKIGQELGVPYELTWSCYQGGSIHCGACGTCIERREAFMQAGVPDPTVYADAAPRMTLDDAGNAEIHWQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP036425_1	1.1\|723808\|34\|NZ_CP036425\|CRISPRCasFinder	723808-723841	34	NZ_CP036425.1	723880-723913	2	0.941

1. spacer 1.1|723808|34|NZ_CP036425|CRISPRCasFinder matches to position: 723880-723913, mismatch: 2, identity: 0.941

tcactaaagcgtgtcgttggtaggtttaacatcc	CRISPR spacer
tcactaaagcatatcgttggtaggtttaacatcc	Protospacer
**********.*.*********************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1261014 : 1271095

Paenibacillus_phage(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_145075496.1\|1261014_1261800_+	AAA family ATPase	A0A0K2CZH1	Paenibacillus_phage	5.7e-33	34.7
WP_145075499.1\|1261792_1262251_+	DUF669 domain-containing protein	A0A088FAP5	Vibrio_phage	1.5e-30	50.4
WP_145075502.1\|1262370_1264149_+	DEAD/DEAH box helicase family protein	A0A1J0GWD7	Alteromonas_phage	2.4e-95	37.6
WP_145075505.1\|1264145_1266485_+	DUF3987 domain-containing protein	R9ZXK4	Cellulophaga_phage	6.4e-32	30.9
WP_145081462.1\|1266934_1268254_+	ParB N-terminal domain-containing protein	Q708N6	Streptococcus_phage	4.0e-79	38.0
WP_145075507.1\|1268247_1268457_-	hypothetical protein	NA	NA	NA	NA
WP_145075510.1\|1268521_1268758_+	hypothetical protein	NA	NA	NA	NA
WP_145075513.1\|1268806_1271095_+	hypothetical protein	H1ZZE1	Pseudomonas_virus	9.7e-25	27.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP036425

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection