CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP041677	Lactobacillus reuteri strain LL7 plasmid unnamed, complete sequence	2 crisprs	cas14j	0	3	6	0
NZ_CP041676	Lactobacillus reuteri strain LL7 chromosome, complete genome	1 crisprs	RT,cas14j,cas3,PrimPol,DinG,DEDDh,csa3	9	1	7	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP041677_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041677_1

38275-38430

TypeV

Consensus_repeat	Method
TTTACAACATACATCATTTACACACTACCAGAAACC	PILER-CR

2 spacers

cas14j

The CRISPR arrays of NZ_CP041677_1

>merge|NZ_CP041677|1|38275-38430|PILER-CR
ATTATTTACACACTACCAGAAACTGAACACACACTATTTGTGTGGGCGATTCCGTTTACAACATACATCATTTACACACTACCAGAAACCCATCTACTTCATTACTATTCTGCCGTGGTCTTTACAACATACTTCATTTACACACTACCAGAAACC

>NZ_CP041677|1|1|38275-38430|PILER-CR
ATTATTTACACACTACCAGAAACTGAACACACACTA	TTTGTGTGGGCGATTCCGTTTACAACATAC
ATCATTTACACACTACCAGAAACCCATCTACTTCAT	TACTATTCTGCCGTGGTCTTTACAACATAC
TTCATTTACACACTACCAGAAACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041677.1\|WP_172616844.1\|31495_32248_+\|DNA/RNA-non-specific-endonuclease	unknown	unknown	gnl\|CDD\|372824
NZ_CP041677.1\|WP_172616845.1\|38062_38224_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041677.1\|WP_144227704.1\|36315_37482_-\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	cas14j	-	gnl\|CDD\|223747
NZ_CP041677.1\|WP_144227888.1\|45389_45626_-\|AbrB-family-transcriptional-regulator	unknown	unknown	unknown
NZ_CP041677.1\|WP_144227903.1\|49112_49352_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041677.1\|WP_144227885.1\|45040_45397_-\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	unknown	unknown	gnl\|CDD\|367091
NZ_CP041677.1\|WP_144227900.1\|47701_48619_-\|M48-family-metalloprotease	unknown	unknown	gnl\|CDD\|320699
NZ_CP041677.1\|WP_144227853.1\|24980_25700_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041677.1\|WP_144227859.1\|26642_29855_-\|MucBP-domain-containing-protein	unknown	unknown	gnl\|CDD\|380191
NZ_CP041677.1\|WP_144227774.1\|37503_37932_-\|IS200/IS605-family-transposase	unknown	unknown	gnl\|CDD\|376616
NZ_CP041677.1\|WP_144227891.1\|46100_46361_+\|type-II-toxin-antitoxin-system-PrlF-family-antitoxin	unknown	unknown	gnl\|CDD\|374238
NZ_CP041677.1\|WP_144227862.1\|30082_30295_+\|MerR-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133390
NZ_CP041677.1\|WP_144227882.1\|43203_44877_+\|N-6-DNA-methylase	unknown	unknown	gnl\|CDD\|366501
NZ_CP041677.1\|WP_144227879.1\|40578_43182_+\|YfhO-family-protein	unknown	unknown	gnl\|CDD\|370572
NZ_CP041677.1\|WP_144227894.1\|46360_46705_+\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	unknown	unknown	gnl\|CDD\|367091
NZ_CP041677.1\|WP_144227865.1\|30301_31453_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369740
NZ_CP041677.1\|WP_144227856.1\|26350_26641_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041677.1\|WP_144227875.1\|38614_40579_+\|DUF2325-domain-containing-protein	unknown	unknown	gnl\|CDD\|378383
NZ_CP041677.1\|WP_144227897.1\|47317_47587_+\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	unknown
NZ_CP041677.1\|WP_144227868.1\|34788_36036_+\|RepB-family-plasmid-replication-initiator-protein	unknown	unknown	gnl\|CDD\|376444

Protein	Function_ID	Function_description	E-value
NZ_CP041677.1\|WP_172616844.1\|31495_32248_+\|DNA/RNA-non-specific-endonuclease	gnl\|CDD\|372824	pfam13930, Endonuclea_NS_2, DNA/RNA non-specific endonuclease.	3.95053e-14
NZ_CP041677.1\|WP_144227704.1\|36315_37482_-\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.21223e-48
NZ_CP041677.1\|WP_144227885.1\|45040_45397_-\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	gnl\|CDD\|367091	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system. PemK is a growth inhibitor in E. coli known to bind to the promoter region of the Pem operon, auto-regulating synthesis. This family represents the toxin molecule of a typical bacterial toxin-antitoxin system pairing. The family includes a number of different toxins, such as MazF, Kid, PemK, ChpA, ChpB and ChpAK.	5.25621e-26
NZ_CP041677.1\|WP_144227900.1\|47701_48619_-\|M48-family-metalloprotease	gnl\|CDD\|320699	cd07340, M48B_Htpx_like, Peptidase M48 subfamily B HtpX-like membrane-bound metallopeptidase. This HtpX family of peptidase M48 subfamily B includes uncharacterized HtpX homologs and consists of proteins smaller than Ste24p, with homology restricted to the C-terminal half of Ste24p. HtpX expression is controlled by the Cpx stress response system, which senses abnormal membrane proteins. HtpX participates in the proteolytic quality control of these misfolded proteins by undergoing self-degradation and collaborating with FtsH, a membrane-bound and ATP-dependent protease, to eliminate them. HtpX, a zinc metalloprotease with an active site motif HEXXH, has an FtsH-like topology, and is capable of introducing endoproteolytic cleavages into SecY (also an FtsH substrate). However, HtpX does not have an ATPase activity and will only act against cytoplasmic regions of a target membrane protein. Thus, HtpX and FtsH have overlapping and/or complementary functions, which are especially important at high temperature; in E. coli and Xylella fastidiosa, HtpX is heat-inducible, while in Streptococcus gordonii it is not.	1.1966e-90
NZ_CP041677.1\|WP_144227868.1\|34788_36036_+\|RepB-family-plasmid-replication-initiator-protein	gnl\|CDD\|376444	pfam01051, Rep_3, Initiator Replication protein. This protein is an initiator of plasmid replication. RepB possesses nicking-closing (topoisomerase I) like activity. It is also able to perform a strand transfer reaction on ssDNA that contains its target. This family also includes RepA which is an E.coli protein involved in plasmid replication. The RepA protein binds to DNA repeats that flank the repA gene.	5.94318e-40
NZ_CP041677.1\|WP_144227859.1\|26642_29855_-\|MucBP-domain-containing-protein	gnl\|CDD\|380191	NF033187, internalin_J, class 1 internalin InlJ. Internalins, as found in the intracellular human pathogen Listeria monocytogenes, are paralogous surface-anchored proteins with an N-terminal signal peptide, leucine-rich repeats, and a C-terminal LPXTG processing and cell surface anchoring site. See PMID:17764999 for a general discussion of internalins. Members of this family are internalin J (InlJ).	2.24951e-15
NZ_CP041677.1\|WP_144227774.1\|37503_37932_-\|IS200/IS605-family-transposase	gnl\|CDD\|376616	pfam01797, Y1_Tnp, Transposase IS200 like. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS200 from E. coli.	7.16361e-46
NZ_CP041677.1\|WP_144227891.1\|46100_46361_+\|type-II-toxin-antitoxin-system-PrlF-family-antitoxin	gnl\|CDD\|374238	pfam15937, PrlF_antitoxin, prlF antitoxin for toxin YhaV_toxin. PrlF_antitoxin is a family of bacterial antitoxins that neutralizes the toxin YhaV. PrlF is labile and forms a homodimer that then binds to the YhaV toxin thereby neutralising its ribonuclease activity. Alone, it can also act as a transcription factor. The YhaV/PrlF complex binds the prlF-yhaV operon, probably regulating its expression negatively. Over-expression of PrlF leads to increased doubling time.	2.53483e-10
NZ_CP041677.1\|WP_144227862.1\|30082_30295_+\|MerR-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|133390	cd04762, HTH_MerR-trunc, Helix-Turn-Helix DNA binding domain of truncated MerR-like proteins. Proteins in this family mostly have a truncated helix-turn-helix (HTH) MerR-like domain. They lack a portion of the C-terminal region, called Wing 2 and the long dimerization helix that is typically present in MerR-like proteins. These truncated domains are found in response regulator receiver (REC) domain proteins (i.e., CheY), cytosine-C5 specific DNA methylases, IS607 transposase-like proteins, and RacA, a bacterial protein that anchors chromosomes to cell poles.	1.7688e-09
NZ_CP041677.1\|WP_144227879.1\|40578_43182_+\|YfhO-family-protein	gnl\|CDD\|370572	pfam09586, YfhO, Bacterial membrane protein YfhO. This protein is a conserved membrane protein. The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system. Some members of this family have been annotated as glycosyl transferases of the PMT family.	0
NZ_CP041677.1\|WP_144227894.1\|46360_46705_+\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	gnl\|CDD\|367091	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system. PemK is a growth inhibitor in E. coli known to bind to the promoter region of the Pem operon, auto-regulating synthesis. This family represents the toxin molecule of a typical bacterial toxin-antitoxin system pairing. The family includes a number of different toxins, such as MazF, Kid, PemK, ChpA, ChpB and ChpAK.	3.47492e-23
NZ_CP041677.1\|WP_144227865.1\|30301_31453_+\|hypothetical-protein	gnl\|CDD\|369740	pfam08192, Peptidase_S64, Peptidase family S64. This family of fungal proteins is involved in the processing of membrane bound transcription factor Stp1. The processing causes the signalling domain of Stp1 to be passed to the nucleus where several permease genes are induced. The permeases are important for uptake of amino acids, and processing of tp1 only occurs in an amino acid-rich environment. This family is predicted to be distantly related to the trypsin family (MEROPS:S1) and to have a typical trypsin-like catalytic triad.	0.00326117
NZ_CP041677.1\|WP_144227875.1\|38614_40579_+\|DUF2325-domain-containing-protein	gnl\|CDD\|378383	pfam10087, DUF2325, Uncharacterized protein conserved in bacteria (DUF2325). Members of this family of hypothetical bacterial proteins have no known function.	9.2302e-07
NZ_CP041677.1\|WP_144227882.1\|43203_44877_+\|N-6-DNA-methylase	gnl\|CDD\|366501	pfam01170, UPF0020, Putative RNA methylase family UPF0020. This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains.	5.91574e-10

>NZ_CP041677.1|WP_172616845.1|38062_38224_+|hypothetical-protein
MFEQNRKTSSLSKREPNNWNSVWQISDQDCFKIAANYDLPSLIVKLRVELFYK
>NZ_CP041677.1|WP_144227774.1|37503_37932_-|IS200/IS605-family-transposase
MKDIERLTYGRTSVYNLNYHIIWGTKYRNKVLKGHVEDAFKRIILEIADKYGFKIAHMEIGKDDHVHLLVSAPPKLSVTNIVRWLKGITAYRLFRECPELKKSYWKQQDRHLWSPSYYVESIGVVNEQAVAKYIDDQRKKEI
>NZ_CP041677.1|WP_144227704.1|36315_37482_-|IS200/IS605-family-element-transposase-accessory-protein-TnpB
MEKVVRGVKLRLYPNAKQRNQLSQMFGNDRFVWNQMLNMAKERYSNNPSSHFVNEYGMNYLLKALKNEYPFLKESDSTSFLVVNHNLAQAFKMLFKHRGGYPRFKSRHYLKKSFTGRSKMSVEAKRRVKMPKLGSIRTSKTGQLNNGKIKRYTISLEPTGKYYLSLQVEVPIIQSLPKTGKQVGIDVGVADLAITSDGQKYPKFNPLWLDKQATKWQAKYSRRKHQATISVRQWNHDKNHLTDMEVNDYQNWQRAQQIKARYQAKIANQRKDYLHKITTQLVKHYDVIVIEDLKAKNLQKNHHLAKSIANASWYQFRTMLEYKCAWYGKQLVVVKPNYTSQQCSKCGYQSGTKPLEIREWTCPNCGTHHDRDINAAVNILHKGLKAIG
>NZ_CP041677.1|WP_144227868.1|34788_36036_+|RepB-family-plasmid-replication-initiator-protein
MSNEIVKYENTLNTVPLRRFTPVDMNIFFALVARVRDKGVNEVSFTYDYLKKISRFKGHRNFNEYLKALWEKLKTLSMESDDGERYKSIVLFTQFEIDRKKERLSVKVNSDYTYLFNELQEWTRFSLEQYTHFDSTYSKTIFRLLKQYRTIGHRKFKIDEFRRLLDIPKSYKISNIDTRIIKIAREELTPIFHGLTIVKEKRGRKVIGYNFSWRPESKKSDDFSKTAEYEKQEALRNIRFNASLTDDEKYNAIDRLLGLKLGSTKEDVLKERAYEATPIEAEETDHQSEEQFLQAKVDELHKKQKSSTGLTSEEVNDLTRFQLRLMNLKKYQKRQGDKKTDSPEIFDNVSDNNNEQNNPKKEEVKPRAYYAHIVKVLQQKEKRYKARNAKLPEKDLINLTQARLYVQRYDLGVYY
>NZ_CP041677.1|WP_172616844.1|31495_32248_+|DNA/RNA-non-specific-endonuclease
MKFRKFARTLGIALVSLSLLAGCSNPSPLTQSNSSSSSQPVTRSNISSNSSSSSNTTSNYGGITSTQKSQLAALDYKSGENPVIQVNNGKSTLTPKSWTSNHVIYSNLDSLNRTSNSNTAFLEQRNHAQQSLRVRQYVQPTGWHSNHGRTQYYNRGHLIAYSVSAGIDQNGNYEPNNTSGDQNNPKNLFTQTAYSNQELQTIYETKVRNAIEQGEKVIYQATPIFRGNELMARGINLQAVSTDGKLNFNV
>NZ_CP041677.1|WP_144227865.1|30301_31453_+|hypothetical-protein
MAELPRCYPKDFDIELTPDPKPANSKSKDKAPKSRMALRAQEKEQAKQAKQSKNSNKGPKYDWKLYRNWMIIFLIIAVIASFFVYNHMQSSSANEASAARIVKRDFNSKKSNITSSATQSDMDKLKKNASKIKNSDKANYYSQLAKAGTAALSNQDKYQNLKNDAGRYKTSVTVAKVKSLQSQLKSGNLQERLPDFYSTTNQKYQKLIKPVTKVQSLHAKVNKLYNKKGKLKSSVSVDKVNKLMDKVGKYMDSYQLSYKDFKKLQKAQKTAQKNKEAESASESTSNVDKVESGSSSDSGKLTSPSNSQNTTNSSNTGQSSYYGSGSTGTTSHYSGGGHSSSTISASTSTSTSQNHQSSTNSNNQITGEPGITGSTDGVWFRQY
>NZ_CP041677.1|WP_144227862.1|30082_30295_+|MerR-family-DNA-binding-transcriptional-regulator
MAKLLNVSYRTLVRWDENGTLTAYRTPTNRRYYTEEQYLMHIGKYTNPLEGLSDEDKKLVMALINRLKKE
>NZ_CP041677.1|WP_144227859.1|26642_29855_-|MucBP-domain-containing-protein
MRSRRLLGWFNRANQAALPEPEAHEDKHTDNTTAKEEAVEKDADNQETTVIEGKVIESSEDTEKASKENDVQFPETTEPSQGQPIIVAFYENGREVSAPYVFRGSVGDQLQLNDLNIPAGYEYVDGFMPLAISDDSQHLKIAVKSTLIHYVLHAVTEDGAAIPNVDNVYAQGEPGSSIPKSNYQEIDGYQPFEKRTYLVPEQDSDIEVVYHPVMQQIKVTAETDTGEVLTQEVLEGNTGEKYKINPQHYQIDGYELVKLPDNLSGEFTPGEQHISLIYHARESHVTVRFIDTHGKQIHRPLTYAGEFDSEQKVKLPIIDGYHLNDENSKEFTIHFEAFDSEKILKFERNEQEFAIHLWLDKAHKEKAAADIIVKGKVDDNYHEEVPEIKGYEVSEKVVSGQFSRYENPDIDITYQIKTSHLLVKFADAAGRPIKAVKPIEKLGHWGDEVTFDLPEIDGYERPKPTFHHQMESDDETIILHYHAKKVSVLIDYVNGQTNANLNLDLPKVKTGYVGQPYHVEPQPIDGYTLRDTPKNISGVFAPNMNKITLVYDPVMVTYVLNFIDLVGNAITEPKEVQGKYGTNYNFVQLAKKMAKGYQLQTLEQDLQGTFGKHNQRMNIRYQADEVSFTVVPVNQHEKPIDERYDLTIKGLMGQKFSTTLPKINGYQRKAERVGGTIGQDMVNKRVPVAYDPTTSKVTIRSRYQGGDHDGEAVFKDHIMTGLTGDSYHYNVPSVKGYTNDQVACDGNFAADPQTITINYSVTPEHYAVHFVDENRQMVGGLGEKDGFYGDIVEFGNAVPQGFHLPNGAKTSLQLSGKGLYQVVVIPDEILITLRPKATDGKDLGMSRQVKGKFHQPQEVQLPVISGYQAVDGQKAKLTFEFGQKEQVITYEPESRTIKVQYLDTQGNTIHPVKVYSGRFDEPYTITAPELEGYVVVGEKQKQGHYGDNGNAKQTETAFIYRAGSDVFSPAVTPLEDVMPGAESKADPRQLNVNELANRGPQVNVAAKEKSQTTFIVGSADNIVRQPETTVSERSNNAVKEKPHHVNNQKLARLQSAQRMMKHAPKEKDGD
>NZ_CP041677.1|WP_144227856.1|26350_26641_-|hypothetical-protein
MIEIKYEGRTYSASAFAKEFGLSYSRVLRNYKKGYRDAELYAASINKHEIKINDHVFPSKHAAAIHYGIPSSTFYRRLHQGKLYIDDFDGSKAEVS
>NZ_CP041677.1|WP_144227853.1|24980_25700_+|hypothetical-protein
MAHADVNPTATIQTTTTTNQSTSNPWFYVTESEQIKMPTTDSSNGRGVENNSSNTTANTSKDTGSNLLENNINSLPQQNATASNDKTDLKITGEPDMKITGEPDLSTINSINNSQAHSQSATNPYTLEITNSQAIPSTENINTLVNSFHEDSNAPALTTENFIFKTAEVVNNQIIPGNSLGTYTLTISGESSLTDLQKAELLIPQGYQLVTSRYALPEGIMMDPNGHLYAGNTYYCVPS
>NZ_CP041677.1|WP_144227875.1|38614_40579_+|DUF2325-domain-containing-protein
MYDYHDDLRTILDNIGTSKQELKQGKIILAASMRLLLQKDLDQPAKVHPSLQQLTTEDDQPKPSAEDIIRQGVLGKRDVAINSGISTAVKAQPSLLPSKMRMKVIERLEEIHWEASNLLHDGMISPSQRFLNRLVALEEQTDKYYRGLNAGQQSWAQPIEKRLQAQLKLFKQILMIQLAQRPLITQTVEKHYGVKRQLGLNLLKAGISEKTDVDSEFESLIDTVKQDQARLNPPVQKATQIEFERLVDQLTNMKQLAHENHTQYFDLMQGIHDVAAQQMMHSQDSEAVKAAWDKLADVAALNVATASTIENLLDHWPAPVATPKPSPTLSVDSPKVHSSAEPVYTVRRLRAGVNLIDQTGKVVAFVDEKTTRQRQMTAGDLVKAQVSNGNARIEQIVGHQDLDAHKPVIQTAPFMLVESPDRTGKLIICHDINLKPLVVDGKPMTWELDPELVRYFNLRKGSVVELAWYQDPKIVDRDYDGRLMIRWVYDTKTTPKVLPADNHATSNNKRIRERKNLADDPRLGLKTNLALDLQGQHVGIYVGNRQNKVIVEEIVRAYHGRPRVLDGFSKNSRKIKRQVKNLDMVILVLALASHEVSQPLVRVIKQEGIKFAVSTSLSKRQIAQALYRAEHGLPVFEPANQAVDYPTVLVGDAD
>NZ_CP041677.1|WP_144227879.1|40578_43182_+|YfhO-family-protein
MVKLFYRRWIGPAFMLPVLIIGIYFAFRGVYPLSNSTVLTVDLGQQYVDFLAFLHDSLWHQPANLIYSFQKGLGGELWGTSAYYLMSPLNLLAVLFPKSWLPTTVFIITLLKYGLAAVSMGWLLRREHLQRGWPLIIYTTAYALMAWMIANQLNIIWTDVLYLLPLVIAGVNQLSRQESPWLYVGCFAYLIVVNYYMAWMVGLFVPAFLLWQLSRQANLRKTILPVAISWLKWTSLVVLLSAVILLPTMMSLLVTKGSNNSTSWSFSSEYNPLKIISKLFPATFNFESIKKGQPNLYVGQWAFLGAVYYLITNRDRLRSRLVAFVILAGLFTSFFFVPFDLVWHMTQFPIWYPSRFSFLWSFFIVYLAATTLKLPLYIKWWQQVLLLLLVAALITISSFQLHHVSGFKITNIVVGGLLMVFTIDLWVYGSRWPQRVFKNVALILTTFDMGYNAVVSLQKLSYLDYSAYRQEVRATQTTVKQLKQVDASHYRITKNYYRSMDDALQTGYYGCDFFGSTIETNTKDFLAAIGQDSEKSAAAYINGTQWTDALLNFRYFFIGQTNINRFMNGMRPDWEGLAKVNLMEKAITVGENPNALGWGYLVSSQVLTTKLNALTAIENQEKMYQGMLGASAKGKKLFSQVTMPSPKLHHVRMIKKRYVNVYWRQQANQPGEMTFDIVPTTNDSYYLSLSGTTHYAATLTVNGEVTPLDISGANTMTVNIAHRQKGKHIRISFHLKKGQSLWLGNIQLYLMRQNTFSQALQQLKRHYWHVTVFKPTQVSGTIQATKTGQVLMTTIPYSKGWHVQVDGQPVAVKKAFNTFIAIPIPTGKHTVTLVYRQPYLGVGMLISAMAIGISGWILFQRKEGTVN
>NZ_CP041677.1|WP_144227882.1|43203_44877_+|N-6-DNA-methylase
MLATEIKKIGAHYTPDSLSIFIADKLKHYYLLENKNQTDKKITILDPSCGEGNLLLAFQKASKDFNYTGLGIDINAEAIETAKEKLQSDSFEFYTDDFLSIFKEPDLFNTNTLIEKVKNIDLIIANPPYIRTSVLGANYAQQLSSAFNLSGKLDMYQVFLKAMTMTLKDNGIICVITPNKYLTNKSGKDIRKYLNTHYKILNIIDLGDTKPFSAAVLPAIFIGKKQENADNKHVPFTKVYESADQISSLNVIPNISELINQADGIYSFKGNNFKVTHGVLDASSDPTTPWNMATIKEKRWADTLLENSAYKFGDVFKVHVGIKTTADNVFIRKSWNNLDQSIRPEQAVLHDLVSSKGITKWFPKLQNLNQILYTHTVKDGKRVPIDFSKYPHAYSYLKENEKQLASRKYVINAHRNWFEIWVPQQPSELDSNKVIFPDISDRAKFTYDDHGRYVDGNCYWLTAKKGIPNDYLLLATGVANSETMERYYNIKFQNVLYNGRKRYLTQYVKDYLLPPIDNKHSQKIIELVKKIIKCQQYDENIERSINQEVKYAFGLIN
>NZ_CP041677.1|WP_144227885.1|45040_45397_-|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin
MIKQADIVTVDFEPSKGHEIQKRRPALVMSRNEYNKSTPLIIVCPITSTQRNRPFLIPLKQPVKDGTLDKQSKVNTIQVYSLDSTKQGGRNVQVIGHLDDDEFYVIAQYLMQNFNFKF
>NZ_CP041677.1|WP_144227888.1|45389_45626_-|AbrB-family-transcriptional-regulator
MDTVKTRQQGNTIAVTLSKKFNIPAGEEYYITKSDTGVITLVPKVKDIFVNVQEGQYSDADEDGLARNFTPKGSELDD
>NZ_CP041677.1|WP_144227891.1|46100_46361_+|type-II-toxin-antitoxin-system-PrlF-family-antitoxin
MEQEAISTITAKNQTTIPRAVRRKLNLVPGDQLSYVIKSDGNVSIKKVKPKTDKMWQIAYQQEKKYGSFDTPEVDWGPDIESEEFD
>NZ_CP041677.1|WP_144227894.1|46360_46705_+|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin
MYHQGDIIWVDLNPAKGSEMKKKRPCLIVSNDNYNHFFNTVIVLPISSSPKYHDDPKYQQSPFLEEIKGMNIHGTVLLQHVRAVNLKARSDGKVVDSVGLATLNSIVERLKKFL
>NZ_CP041677.1|WP_144227897.1|47317_47587_+|CPBP-family-intramembrane-metalloprotease
MFVVIMLIPLLLILGINHWIMDIYRHSHWPLFLTAWEAGIAEEFAFRLGVFSMIYKLLRHAKLRLILSIGLTSLSFGCLHLLNATQQPL
>NZ_CP041677.1|WP_144227900.1|47701_48619_-|M48-family-metalloprotease
MLYQQITHNKRNTWILLSVFLVLIVAITFLIACFFPRLALIFFIFSIAYVAIKYFFATKQLLKVTGAQEVTKENNLEIYELVEELCLAGGMPMPKIYISPTTEINAFATGFDPDHASLVLYQGLLDIMNKKEVQGVIGHELSHIRNYDIRVTVLSSILVNLILWTGIGTLLFGWGVITAEAKGWVALILKMFGVLILAFGLVVSVFAIPIAKLLSLLISRQREYLADAGSVDLTREPSGLISGLQKLEDLEEGNQLPEPDQSSTNLVLNSLYFNSGSISKWYDRFFSDHPPLDKRIQRLKDSAKI
>NZ_CP041677.1|WP_144227903.1|49112_49352_+|hypothetical-protein
MVNCAKCGKELNDGDAYYFVPDQDLKDRYFGDPAGMDNMFCSKDCAPTQESLKQGHIKVDDEGVVHLYPDDYETESTDK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP041677_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041677_2

48805-48907

TypeV

Consensus_repeat	Method
TGGTCATAACATACTTCAAATACACACTACCAGAAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041677_2

>merge|NZ_CP041677|2|48805-48907|CRISPRCasFinder
TGGTCATAACATACTTCAAATACACACTACCAGAAACAATGAATGGTGTTGGTAAAGCTATGACTGTGGTCATAACATACTTCAAATACACACTACCAGAAAC

>NZ_CP041677|2|1|48805-48907|CRISPRCasFinder
TGGTCATAACATACTTCAAATACACACTACCAGAAAC	AATGAATGGTGTTGGTAAAGCTATGACTG
TGGTCATAACATACTTCAAATACACACTACCAGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041677.1\|WP_144227910.1\|50958_54213_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041677.1\|WP_144227922.1\|57402_58998_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225747
NZ_CP041677.1\|WP_172616845.1\|38062_38224_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041677.1\|WP_144227919.1\|56390_57371_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041677.1\|WP_144227888.1\|45389_45626_-\|AbrB-family-transcriptional-regulator	unknown	unknown	unknown
NZ_CP041677.1\|WP_144227879.1\|40578_43182_+\|YfhO-family-protein	unknown	unknown	gnl\|CDD\|370572
NZ_CP041677.1\|WP_144227900.1\|47701_48619_-\|M48-family-metalloprotease	unknown	unknown	gnl\|CDD\|320699
NZ_CP041677.1\|WP_144227882.1\|43203_44877_+\|N-6-DNA-methylase	unknown	unknown	gnl\|CDD\|366501
NZ_CP041677.1\|WP_144227913.1\|54392_55253_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041677.1\|WP_144227925.1\|59010_60906_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227938
NZ_CP041677.1\|WP_144227891.1\|46100_46361_+\|type-II-toxin-antitoxin-system-PrlF-family-antitoxin	unknown	unknown	gnl\|CDD\|374238
NZ_CP041677.1\|WP_144227897.1\|47317_47587_+\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	unknown
NZ_CP041677.1\|WP_144227885.1\|45040_45397_-\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	unknown	unknown	gnl\|CDD\|367091
NZ_CP041677.1\|WP_144227930.1\|63367_65020_+\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|212030
NZ_CP041677.1\|WP_144227906.1\|49532_50786_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041677.1\|WP_144227916.1\|55473_56259_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041677.1\|WP_144227894.1\|46360_46705_+\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	unknown	unknown	gnl\|CDD\|367091
NZ_CP041677.1\|WP_144227927.1\|60959_63257_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236078
NZ_CP041677.1\|WP_144227903.1\|49112_49352_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041677.1\|WP_144227875.1\|38614_40579_+\|DUF2325-domain-containing-protein	unknown	unknown	gnl\|CDD\|378383

Protein	Function_ID	Function_description	E-value
NZ_CP041677.1\|WP_144227922.1\|57402_58998_+\|hypothetical-protein	gnl\|CDD\|225747	COG3206, GumC, Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane].	0.000905928
NZ_CP041677.1\|WP_144227885.1\|45040_45397_-\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	gnl\|CDD\|367091	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system. PemK is a growth inhibitor in E. coli known to bind to the promoter region of the Pem operon, auto-regulating synthesis. This family represents the toxin molecule of a typical bacterial toxin-antitoxin system pairing. The family includes a number of different toxins, such as MazF, Kid, PemK, ChpA, ChpB and ChpAK.	5.25621e-26
NZ_CP041677.1\|WP_144227879.1\|40578_43182_+\|YfhO-family-protein	gnl\|CDD\|370572	pfam09586, YfhO, Bacterial membrane protein YfhO. This protein is a conserved membrane protein. The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system. Some members of this family have been annotated as glycosyl transferases of the PMT family.	0
NZ_CP041677.1\|WP_144227894.1\|46360_46705_+\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	gnl\|CDD\|367091	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system. PemK is a growth inhibitor in E. coli known to bind to the promoter region of the Pem operon, auto-regulating synthesis. This family represents the toxin molecule of a typical bacterial toxin-antitoxin system pairing. The family includes a number of different toxins, such as MazF, Kid, PemK, ChpA, ChpB and ChpAK.	3.47492e-23
NZ_CP041677.1\|WP_144227900.1\|47701_48619_-\|M48-family-metalloprotease	gnl\|CDD\|320699	cd07340, M48B_Htpx_like, Peptidase M48 subfamily B HtpX-like membrane-bound metallopeptidase. This HtpX family of peptidase M48 subfamily B includes uncharacterized HtpX homologs and consists of proteins smaller than Ste24p, with homology restricted to the C-terminal half of Ste24p. HtpX expression is controlled by the Cpx stress response system, which senses abnormal membrane proteins. HtpX participates in the proteolytic quality control of these misfolded proteins by undergoing self-degradation and collaborating with FtsH, a membrane-bound and ATP-dependent protease, to eliminate them. HtpX, a zinc metalloprotease with an active site motif HEXXH, has an FtsH-like topology, and is capable of introducing endoproteolytic cleavages into SecY (also an FtsH substrate). However, HtpX does not have an ATPase activity and will only act against cytoplasmic regions of a target membrane protein. Thus, HtpX and FtsH have overlapping and/or complementary functions, which are especially important at high temperature; in E. coli and Xylella fastidiosa, HtpX is heat-inducible, while in Streptococcus gordonii it is not.	1.1966e-90
NZ_CP041677.1\|WP_144227930.1\|63367_65020_+\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|212030	cd00118, LysM, Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.	5.85134e-12
NZ_CP041677.1\|WP_144227882.1\|43203_44877_+\|N-6-DNA-methylase	gnl\|CDD\|366501	pfam01170, UPF0020, Putative RNA methylase family UPF0020. This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains.	5.91574e-10
NZ_CP041677.1\|WP_144227927.1\|60959_63257_+\|hypothetical-protein	gnl\|CDD\|236078	PRK07726, PRK07726, DNA topoisomerase 3.	1.74095e-82
NZ_CP041677.1\|WP_144227875.1\|38614_40579_+\|DUF2325-domain-containing-protein	gnl\|CDD\|378383	pfam10087, DUF2325, Uncharacterized protein conserved in bacteria (DUF2325). Members of this family of hypothetical bacterial proteins have no known function.	9.2302e-07
NZ_CP041677.1\|WP_144227891.1\|46100_46361_+\|type-II-toxin-antitoxin-system-PrlF-family-antitoxin	gnl\|CDD\|374238	pfam15937, PrlF_antitoxin, prlF antitoxin for toxin YhaV_toxin. PrlF_antitoxin is a family of bacterial antitoxins that neutralizes the toxin YhaV. PrlF is labile and forms a homodimer that then binds to the YhaV toxin thereby neutralising its ribonuclease activity. Alone, it can also act as a transcription factor. The YhaV/PrlF complex binds the prlF-yhaV operon, probably regulating its expression negatively. Over-expression of PrlF leads to increased doubling time.	2.53483e-10
NZ_CP041677.1\|WP_144227925.1\|59010_60906_+\|hypothetical-protein	gnl\|CDD\|227938	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion].	0.000266288

>NZ_CP041677.1|WP_144227900.1|47701_48619_-|M48-family-metalloprotease
MLYQQITHNKRNTWILLSVFLVLIVAITFLIACFFPRLALIFFIFSIAYVAIKYFFATKQLLKVTGAQEVTKENNLEIYELVEELCLAGGMPMPKIYISPTTEINAFATGFDPDHASLVLYQGLLDIMNKKEVQGVIGHELSHIRNYDIRVTVLSSILVNLILWTGIGTLLFGWGVITAEAKGWVALILKMFGVLILAFGLVVSVFAIPIAKLLSLLISRQREYLADAGSVDLTREPSGLISGLQKLEDLEEGNQLPEPDQSSTNLVLNSLYFNSGSISKWYDRFFSDHPPLDKRIQRLKDSAKI
>NZ_CP041677.1|WP_144227897.1|47317_47587_+|CPBP-family-intramembrane-metalloprotease
MFVVIMLIPLLLILGINHWIMDIYRHSHWPLFLTAWEAGIAEEFAFRLGVFSMIYKLLRHAKLRLILSIGLTSLSFGCLHLLNATQQPL
>NZ_CP041677.1|WP_144227894.1|46360_46705_+|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin
MYHQGDIIWVDLNPAKGSEMKKKRPCLIVSNDNYNHFFNTVIVLPISSSPKYHDDPKYQQSPFLEEIKGMNIHGTVLLQHVRAVNLKARSDGKVVDSVGLATLNSIVERLKKFL
>NZ_CP041677.1|WP_144227891.1|46100_46361_+|type-II-toxin-antitoxin-system-PrlF-family-antitoxin
MEQEAISTITAKNQTTIPRAVRRKLNLVPGDQLSYVIKSDGNVSIKKVKPKTDKMWQIAYQQEKKYGSFDTPEVDWGPDIESEEFD
>NZ_CP041677.1|WP_144227888.1|45389_45626_-|AbrB-family-transcriptional-regulator
MDTVKTRQQGNTIAVTLSKKFNIPAGEEYYITKSDTGVITLVPKVKDIFVNVQEGQYSDADEDGLARNFTPKGSELDD
>NZ_CP041677.1|WP_144227885.1|45040_45397_-|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin
MIKQADIVTVDFEPSKGHEIQKRRPALVMSRNEYNKSTPLIIVCPITSTQRNRPFLIPLKQPVKDGTLDKQSKVNTIQVYSLDSTKQGGRNVQVIGHLDDDEFYVIAQYLMQNFNFKF
>NZ_CP041677.1|WP_144227882.1|43203_44877_+|N-6-DNA-methylase
MLATEIKKIGAHYTPDSLSIFIADKLKHYYLLENKNQTDKKITILDPSCGEGNLLLAFQKASKDFNYTGLGIDINAEAIETAKEKLQSDSFEFYTDDFLSIFKEPDLFNTNTLIEKVKNIDLIIANPPYIRTSVLGANYAQQLSSAFNLSGKLDMYQVFLKAMTMTLKDNGIICVITPNKYLTNKSGKDIRKYLNTHYKILNIIDLGDTKPFSAAVLPAIFIGKKQENADNKHVPFTKVYESADQISSLNVIPNISELINQADGIYSFKGNNFKVTHGVLDASSDPTTPWNMATIKEKRWADTLLENSAYKFGDVFKVHVGIKTTADNVFIRKSWNNLDQSIRPEQAVLHDLVSSKGITKWFPKLQNLNQILYTHTVKDGKRVPIDFSKYPHAYSYLKENEKQLASRKYVINAHRNWFEIWVPQQPSELDSNKVIFPDISDRAKFTYDDHGRYVDGNCYWLTAKKGIPNDYLLLATGVANSETMERYYNIKFQNVLYNGRKRYLTQYVKDYLLPPIDNKHSQKIIELVKKIIKCQQYDENIERSINQEVKYAFGLIN
>NZ_CP041677.1|WP_144227879.1|40578_43182_+|YfhO-family-protein
MVKLFYRRWIGPAFMLPVLIIGIYFAFRGVYPLSNSTVLTVDLGQQYVDFLAFLHDSLWHQPANLIYSFQKGLGGELWGTSAYYLMSPLNLLAVLFPKSWLPTTVFIITLLKYGLAAVSMGWLLRREHLQRGWPLIIYTTAYALMAWMIANQLNIIWTDVLYLLPLVIAGVNQLSRQESPWLYVGCFAYLIVVNYYMAWMVGLFVPAFLLWQLSRQANLRKTILPVAISWLKWTSLVVLLSAVILLPTMMSLLVTKGSNNSTSWSFSSEYNPLKIISKLFPATFNFESIKKGQPNLYVGQWAFLGAVYYLITNRDRLRSRLVAFVILAGLFTSFFFVPFDLVWHMTQFPIWYPSRFSFLWSFFIVYLAATTLKLPLYIKWWQQVLLLLLVAALITISSFQLHHVSGFKITNIVVGGLLMVFTIDLWVYGSRWPQRVFKNVALILTTFDMGYNAVVSLQKLSYLDYSAYRQEVRATQTTVKQLKQVDASHYRITKNYYRSMDDALQTGYYGCDFFGSTIETNTKDFLAAIGQDSEKSAAAYINGTQWTDALLNFRYFFIGQTNINRFMNGMRPDWEGLAKVNLMEKAITVGENPNALGWGYLVSSQVLTTKLNALTAIENQEKMYQGMLGASAKGKKLFSQVTMPSPKLHHVRMIKKRYVNVYWRQQANQPGEMTFDIVPTTNDSYYLSLSGTTHYAATLTVNGEVTPLDISGANTMTVNIAHRQKGKHIRISFHLKKGQSLWLGNIQLYLMRQNTFSQALQQLKRHYWHVTVFKPTQVSGTIQATKTGQVLMTTIPYSKGWHVQVDGQPVAVKKAFNTFIAIPIPTGKHTVTLVYRQPYLGVGMLISAMAIGISGWILFQRKEGTVN
>NZ_CP041677.1|WP_144227875.1|38614_40579_+|DUF2325-domain-containing-protein
MYDYHDDLRTILDNIGTSKQELKQGKIILAASMRLLLQKDLDQPAKVHPSLQQLTTEDDQPKPSAEDIIRQGVLGKRDVAINSGISTAVKAQPSLLPSKMRMKVIERLEEIHWEASNLLHDGMISPSQRFLNRLVALEEQTDKYYRGLNAGQQSWAQPIEKRLQAQLKLFKQILMIQLAQRPLITQTVEKHYGVKRQLGLNLLKAGISEKTDVDSEFESLIDTVKQDQARLNPPVQKATQIEFERLVDQLTNMKQLAHENHTQYFDLMQGIHDVAAQQMMHSQDSEAVKAAWDKLADVAALNVATASTIENLLDHWPAPVATPKPSPTLSVDSPKVHSSAEPVYTVRRLRAGVNLIDQTGKVVAFVDEKTTRQRQMTAGDLVKAQVSNGNARIEQIVGHQDLDAHKPVIQTAPFMLVESPDRTGKLIICHDINLKPLVVDGKPMTWELDPELVRYFNLRKGSVVELAWYQDPKIVDRDYDGRLMIRWVYDTKTTPKVLPADNHATSNNKRIRERKNLADDPRLGLKTNLALDLQGQHVGIYVGNRQNKVIVEEIVRAYHGRPRVLDGFSKNSRKIKRQVKNLDMVILVLALASHEVSQPLVRVIKQEGIKFAVSTSLSKRQIAQALYRAEHGLPVFEPANQAVDYPTVLVGDAD
>NZ_CP041677.1|WP_172616845.1|38062_38224_+|hypothetical-protein
MFEQNRKTSSLSKREPNNWNSVWQISDQDCFKIAANYDLPSLIVKLRVELFYK
>NZ_CP041677.1|WP_144227903.1|49112_49352_+|hypothetical-protein
MVNCAKCGKELNDGDAYYFVPDQDLKDRYFGDPAGMDNMFCSKDCAPTQESLKQGHIKVDDEGVVHLYPDDYETESTDK
>NZ_CP041677.1|WP_144227906.1|49532_50786_+|hypothetical-protein
MQNADQVKTDDQQVRSTLREYLLKGMLNYLKKNPLTLMGKTVPAVEYPADYEWQPLTDGHEVYQFVQGQSNYPGEYDEMTDLMSLLRDDLIRVDLPGYPGINWLDTADDFVDQHPQMVLLAFQKLSKDQLGDFYTSFSDEVLEDYGNEAGIDPDPVTRAKWLLEKLDGQVDQEARDSYENEMEYTIALLFKKYYMFELSFPDIVSQTVEMTIQDQWTKHYQKDFQQAQHDALPAGFQSIMVQTKQVKNKKQRERAQLLVWLSTINQLTPYLNSATNRITQSNVRWKYLIEEGYMADEVYDFKKRVLSNLKDEPGVTILHESTNDGNLSFYWYHIEIGQLVFNFRLPMFTGLQWLQSTEHYAPIQQPLHEGPKFGQLNDDDAFLVAANWNIIEQMRKLVPTAFPHGFKPTGTNRFYFD
>NZ_CP041677.1|WP_144227910.1|50958_54213_-|hypothetical-protein
MTVEFIQSKHDAPIRLNNSHLLLLQLIGNLGFVNRNQIDMLWSVCVQYPVTLTPLILAKWCKRGGLLRKVEKPTKSSSKNQLNRPVYLLTNKAKDFLVRQGLWQASWLSEEQVGLNSHNEQAIEVIVQGLYAAAFNADLYGLSVPTLNDGTTISLTRKLINTDDNDSYLQVLINQVSAGGAASNQPVKKATKLVRLGPVAQPTPKELEQPAGGALGKKAKITTGTDPVARPGEPASNDSNTTSPHDLIKSRQVLATNPVLVSELKDALVLGTPLPNYLHTYLDYLVNLTTSDNSMTTSVSNDTDNAIQTSEGSSSPTKPSETTTDIDSFSNKAAGGPAMVTADKRVTANPQPNNNFENQNGQGLSDNLPLTESSNSAPKANRPAQSDQLKAFDSMPAVDADTSRQPTKPTNHAQYALDLLLGQPESHSSTSKVTTNTTELTMPNQGTKPSGVTAFDQTNSTINQQNTGEKTEFSNRQVSSAPRDSEDGGADFAPLRSQIGANQVPDRCQPKKVPGNLPKNEQNTGEKTEFLNRQVSSAPRDSEDGGADFAPLWSQIGANQVPDRCQPKTVQNRLDQQLTTWLKWAPRTADANATNLLPKIPKRFREGQSWTNHELIYQNGMHLTDYNFASFSHQMGITYGKARQLPFLADQMVSLNRDGQAYQLFIELDNRTESNATQVQKILNYIWYALDHPGTEIMLIIATNDGSLSSKRLDGYQNVSRRLANLASRLLKTYVKDSAGQPIYLSTLFESAPNLTIRLTGVSEAYVDVAEFMDGANYALDYVAGITEFSDLVNQTSEWQAKWQPNAQYENLLADADVLSGQSKIIQNQDTRGLGRYLSFTDPQPTWGNFVFTHPQSGMQHQQPLIFGQEHDLGTMLATNHFLTADKQTQSPIILYPHRQRTINALTLPEYKSLLNSTGIYTFDEPLLVQPRYGVNNDPVLHSQLRWLMFQYQKLITNYFKQRDNQADWQQDIIEWQRYRLIDPLSQQPVATRSFTELHELSGKLSSEDFIKQLRINEVPLKLFRQYLDKWPEGLYTLPVIKDLHYWNNQLERDANQVPPIVEVRLWLSSLNSTTPEARIHPRL
>NZ_CP041677.1|WP_144227913.1|54392_55253_+|hypothetical-protein
MQQNDKKLAAQMRGVRAANSVLNGISKISHYQSYHAYRRSLKWAIRYVILAFVIGCIGVIPNVARTYGQLTTLSLIMMITYFFWYYWIMAKSKQMRQDARDAMLMTAMNGIVSDAWRIYDGIYDRPGFPDRNVPGQESLEIVFAQDHSYLRNIYWILKHRPASLPPKPEDIINLKRYLVGLQNLSNEVTQYVAYGSMTDQIARYLATQGIELTPLPKKYVTKPSRWDYAAATGKLKNALWGYPHHFAAYQMVVNEDQVEQDTVDNFKANVKVKKRQRKIAKLQNDN
>NZ_CP041677.1|WP_144227916.1|55473_56259_+|hypothetical-protein
MEKNIRFIAVDGDMRDVKEFLDRSDNYVELDKDIFSRRMDPYFMQRQSRSGVKHAFPVHHWVGQLQSQPRVIVNHSQGDYKFIDATIINQEEYRSAKKEHRLVFPMKVRLYADDKDADLLLSAKSGDTLVIDGYFHPYYANKDGNDQNGILAGYVQIEQFYLDKSTSVRKLIHEKFAEKPKQDSNSKLADLVNNATPEQKAALLQMLQGKNAPVQNQSATRSAQPQPAEPSHVTNDQPQAKKNHYEGITDDALKNAINQDF
>NZ_CP041677.1|WP_144227919.1|56390_57371_+|hypothetical-protein
MIKGLDFDMQTIATEEAKYLLQFYSSDDPLLDDATSYYAILFNTFLNRNADQVFQNKDPKEQTNILDKEILRFKKAMRYAFNKGHQTAFVALLLKSSQIFDPSFFEKPESREYFIYNFENLMTDEAFKANLTRDAIDNLIGYTRKNFENGYNEIMKYGQIFFKKGAAVAFDQVREHIVNKKYKITGYSRMMHVPFNQTFELTPAFKASFSLESPAFEAWNVQWDESYGFDASKSLVAKVTIHQFTKKSIGQYRDVEARTYMMIANQFEGYADEELVYLVQIDYLVADNKYFPRILEHNEYQAILMAIQNTVCRRLQVDGNHVFTTD
>NZ_CP041677.1|WP_144227922.1|57402_58998_+|hypothetical-protein
MKQQILLAMDNGLADNLRNIFLDNSQDFQVLSQNVPIFHSLKASLLRYRPDIVFIAMRHVKFDTDNHEQELLNTIYDIKTNSELSRLRIAIQTSLPKDSPTLKQLAALGVYDIFSTHGVTRQLDMSTVTRQLGQPQNIKNVEEYLSLRKPFKGLNINPTNNSTIKPSSGVNADALKKSNQSLKQANRLLMSDRDQLTSRLNAPTVSRSDYDNLLSQVTDAVNAGLDDDKTKQLFAQIIQANKNQEKRIQQLEKDLNDRTAMIQQVTERNQQLAEQQASQSQGDNSGRIRQLVEENNKLKEQITQLRDQSSVKTSKLKSSSKRVPSCKRKKKSKKPMWIAIALVLIIALGFGFNALNSMGKSQAEAPEPYDSLIKKKEYAKAASAYPSRAVETENKMLADSSLKNKGDIASDINNTTTADAVQFDVAYFSSDFKEVVRLYEDSSSNSLLHPNAQRRTMLAYSYMKTGDVDNARSIAKPLNNDQLNQKIETYAKFQDANKTLEDKLKNGNLSDEDKNTARQQIKQNKAAMKKL
>NZ_CP041677.1|WP_144227925.1|59010_60906_+|hypothetical-protein
MKPVNREMQLRSEGNAKSKSVKKALQTVEKAKQEPQKQVVVHKPNGETVKRNVNTGSKVAAGTKTAAKPKPRTIKKKDNIFKPRKGGMKPRQAGNKSKAGRRRNQSKEGLAGIPKKYIYTGGAVAAVVVIGAAATIAGQDKEEQAGQQSTTNNGSSSLKFDTSDSDNKSTNSKHKAKKNSNKNSNKLDNLLNATNSSSKSGSSSGDLSSLISGSGTASGSSLEKLANAATKSQDAANNLGNGNSNNNNQSSNGNITTLDNKTNNNGNGGNIVDLSNNTGAGQTATPSTPSTGTNTSTGGSTNTTTPSTGNQTTGGNGSGSTSGNAGTSTGDNTNNSGSGNGNTGTGTNTGNGGNSSTDTGKTGNQGSDNSGSGNTGNTGNNSGSNTGSNTGNNGSGNNSGNSGNSGNSGSNTGSDTGNNSGSNTGTGDNNGNSSDNNGSGNNDNNNSGDNDSGNNDSGNSGDNTNTQPSDNTVTGDVSTSVSASTGTTDGSNNANNVPVAEGVTVTTPNGQTVDANNLGIGFPQAGTYDIQATVEGTNGTLTINKTVTVTDGGSLSDPDSTTTPTKTFEASPITAKVGENVPLFSSLEATSGDQKLDGLSNKGITFNTAGQYEIQFHVGDILVKRTVTVTQ
>NZ_CP041677.1|WP_144227927.1|60959_63257_+|hypothetical-protein
MSTVILAEKPDQARAYMKALDIPFTGKATIGSGPTFLDDKTVVVSAAGHLIELVEPEVYDNAYKDRHNLAILPLIPAKFQYAIMKDKQWLFSQIKKEVDAASRIIVATDKDDEGGAIAFNILRLSRALKYKKIERAYPSALDKQAIVRQFKNLEPIDSTWGQAQAGIARSRSDWLIGINLSRLYTGKLQSIGINGNYAIGRAISTTLNLICQWYEEIANFKEEPIYELRGNTQIGGDDVELRSTIRVVGQEGHDAKQEYLSLLHKNGLTRKHVTGRVVTVNSQPKQQQPPLMMTKGDLYKEMTRVAGWTQQRSKKVMQQNYEQGYQTYPRTDSGKITRHMYDYLGELFDDYLNAINLPGKFSKYSYDDKQFRRYLTTEKSAGAHLGIIPTEKLMTPEADVTDDQRLMWEVVVRKALTLWVNPYTYVSNRLGVQITDTLGMVAQNSVMTYEGWHKILLPSRKGKKKKKSLKAGVDFSQHLNTGDQISIVLKHEVGKTKPLSPLKSIQIYDRGGLMEKAYKYVGDEKYARILKETNGIGTSATRDQAMSSLVQKGYVNVDKKDIITVTPAGWLINHLLETSDVNKPILTAKWEEQYTLIEKGKTSANDLINQTAKIVYSEFENLKDNWNPNEIQDYYQELTNHYNEEISIGECPKCGSTVIFENDNRHEGKYDAYRCTNKECDFAIYYHFSNKTISKSNAVRLLSGKPTTLIKNIEARAGKTYDAQLQLIYDENKSKYRLEYYKSEANKPKRPKGFRKNRHRRTSRY
>NZ_CP041677.1|WP_144227930.1|63367_65020_+|LysM-peptidoglycan-binding-domain-containing-protein
MENKKTILKVATGTALGAAVLSTGVLLSSNTVHASTWHANTPNEIQIVQGQKEYTVKSGDTLWAISIKTNIKVDTLAKASGITNPNEIQIGQKIILDGNHMMVKDSDGKTIGMKTLHPSDKVVQSQDYGTPVKTASVEQVTQETSTSSIAPNTDATTSTSNSTTNVATSSTDNGNSNQGSATTPSTDNGSSDQGTTTTPSTDNGSSDQGSTTTPSTDNGSSDQGSTTTPSTDNGSSDQGSTTTPSTDNGNSDQGSTTTPNTDNGSSDQGSTTTPSTDSGSSDQGSTTTPSTDNGSSDQGSTTTPSTDNDSSSNQGSTTTPSTDNGNSDQGSTMTPSTDNGSSDQGSTTTPSTDNGSSDQGSTTTPSTDNGSSDQGSTTTPSTDNGNQTTTDSLYTDPSDTSSFLNEEGLKQAENDFIALLNQMREEKGLNALQNGSHMQADAEVRGEENAKSFETTGDFDKHVRPDGSSGVTAITGTGWKGEVEAMKFLVNDGGNTPEDVASVMLKDLASDEAHYDILMDKDFQWVGVSIKSVVTKTGSKIYALVADFLG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP041677_1	1.1\|38311\|30\|NZ_CP041677\|PILER-CR	38311-38340	30	NZ_CP041677	Lactobacillus reuteri strain LL7 plasmid unnamed, complete sequence	38299-38328	0	1.0
NZ_CP041677_1	1.2\|38377\|30\|NZ_CP041677\|PILER-CR	38377-38406	30	NZ_CP041677	Lactobacillus reuteri strain LL7 plasmid unnamed, complete sequence	38365-38394	0	1.0
NZ_CP041677_2	2.1\|48842\|29\|NZ_CP041677\|CRISPRCasFinder	48842-48870	29	NZ_CP041677	Lactobacillus reuteri strain LL7 plasmid unnamed, complete sequence	48842-48870	0	1.0
NZ_CP041677_1	1.1\|38311\|30\|NZ_CP041677\|PILER-CR	38311-38340	30	NC_019730	Oscillatoria nigro-viridis PCC 7112 plasmid pOSC7112.02, complete sequence	110778-110807	8	0.733

1. spacer 1.1|38311|30|NZ_CP041677|PILER-CR matches to NZ_CP041677 (Lactobacillus reuteri strain LL7 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

gaacacacactatttgtgtgggcgattccg	CRISPR spacer
gaacacacactatttgtgtgggcgattccg	Protospacer
******************************

2. spacer 1.2|38377|30|NZ_CP041677|PILER-CR matches to NZ_CP041677 (Lactobacillus reuteri strain LL7 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

catctacttcattactattctgccgtggtc	CRISPR spacer
catctacttcattactattctgccgtggtc	Protospacer
******************************

3. spacer 2.1|48842|29|NZ_CP041677|CRISPRCasFinder matches to NZ_CP041677 (Lactobacillus reuteri strain LL7 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

aatgaatggtgttggtaaagctatgactg	CRISPR spacer
aatgaatggtgttggtaaagctatgactg	Protospacer
*****************************

4. spacer 1.1|38311|30|NZ_CP041677|PILER-CR matches to NC_019730 (Oscillatoria nigro-viridis PCC 7112 plasmid pOSC7112.02, complete sequence) position: , mismatch: 8, identity: 0.733

gaacacacactatttgtgtgggcgattccg	CRISPR spacer
acgcccaaactatttgagtgggcgattcgc	Protospacer
. .* ** ******** ***********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 6816

uncultured_Mediterranean_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_144227788.1\|310_3772_-	restriction endonuclease	A0A1B1IUC6	uncultured_Mediterranean_phage	3.5e-26	24.6
WP_144227792.1\|3925_4294_-	hypothetical protein	NA	NA	NA	NA
WP_144227795.1\|4303_5515_-	ParM/StbA family protein	NA	NA	NA	NA
WP_144227798.1\|5658_5967_-	hypothetical protein	NA	NA	NA	NA
WP_144227801.1\|5970_6816_-	AAA family ATPase	F0PIG8	Enterococcus_phage	3.9e-64	45.9

DBSCAN-SWA_2

15919 : 71544

Streptococcus_phage(33.33%)

integrase,protease,transposase

attL 15936:15995|attR 71469:73299

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_144227830.1\|15919_17623_-\|transposase	IS1182 family transposase	A0ZS58	Staphylococcus_virus	4.6e-96	39.7
15936:15995	attL	NA	NA	NA	NA
WP_144227833.1\|19067_20552_-	hypothetical protein	NA	NA	NA	NA
WP_144227836.1\|20639_21443_-	hypothetical protein	NA	NA	NA	NA
WP_144227839.1\|21432_22095_-	hypothetical protein	NA	NA	NA	NA
WP_144227843.1\|22096_22702_-	hypothetical protein	NA	NA	NA	NA
WP_144227846.1\|22719_23928_-	hypothetical protein	NA	NA	NA	NA
WP_144227849.1\|24099_24480_-	hypothetical protein	NA	NA	NA	NA
WP_172616843.1\|24581_24758_-	hypothetical protein	NA	NA	NA	NA
WP_144227853.1\|24980_25700_+	hypothetical protein	NA	NA	NA	NA
WP_144227856.1\|26350_26641_-	hypothetical protein	NA	NA	NA	NA
WP_144227859.1\|26642_29855_-	MucBP domain-containing protein	NA	NA	NA	NA
WP_144227862.1\|30082_30295_+	MerR family DNA-binding transcriptional regulator	Q331V0	Clostridium_botulinum_C_phage	1.9e-07	47.4
WP_144227865.1\|30301_31453_+	hypothetical protein	NA	NA	NA	NA
WP_172616844.1\|31495_32248_+	DNA/RNA non-specific endonuclease	NA	NA	NA	NA
WP_144227868.1\|34788_36036_+	RepB family plasmid replication initiator protein	NA	NA	NA	NA
WP_144227704.1\|36315_37482_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	Q5ULQ4	Lactobacillus_virus	2.0e-159	72.4
WP_144227774.1\|37503_37932_-\|transposase	IS200/IS605 family transposase	A0A1P8BMC0	Lactococcus_phage	5.2e-49	68.1
WP_172616845.1\|38062_38224_+	hypothetical protein	NA	NA	NA	NA
WP_144227875.1\|38614_40579_+	DUF2325 domain-containing protein	NA	NA	NA	NA
WP_144227879.1\|40578_43182_+	YfhO family protein	NA	NA	NA	NA
WP_144227882.1\|43203_44877_+	N-6 DNA methylase	A0A076FHE5	Aureococcus_anophage	1.5e-14	32.2
WP_144227885.1\|45040_45397_-	type II toxin-antitoxin system PemK/MazF family toxin	A0A1S5SAB3	Streptococcus_phage	3.3e-12	39.5
WP_144227888.1\|45389_45626_-	AbrB family transcriptional regulator	NA	NA	NA	NA
WP_144227891.1\|46100_46361_+	type II toxin-antitoxin system PrlF family antitoxin	NA	NA	NA	NA
WP_144227894.1\|46360_46705_+	type II toxin-antitoxin system PemK/MazF family toxin	Q708N9	Streptococcus_phage	9.8e-06	45.8
WP_144227897.1\|47317_47587_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_144227900.1\|47701_48619_-\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_144227903.1\|49112_49352_+	hypothetical protein	NA	NA	NA	NA
WP_144227906.1\|49532_50786_+	hypothetical protein	NA	NA	NA	NA
WP_144227910.1\|50958_54213_-	hypothetical protein	NA	NA	NA	NA
WP_144227913.1\|54392_55253_+	hypothetical protein	NA	NA	NA	NA
WP_144227916.1\|55473_56259_+	hypothetical protein	NA	NA	NA	NA
WP_144227919.1\|56390_57371_+	hypothetical protein	NA	NA	NA	NA
WP_144227922.1\|57402_58998_+	hypothetical protein	NA	NA	NA	NA
WP_144227925.1\|59010_60906_+	hypothetical protein	NA	NA	NA	NA
WP_144227927.1\|60959_63257_+	hypothetical protein	A0A1X9I6W8	Streptococcus_phage	1.6e-35	27.3
WP_144227930.1\|63367_65020_+	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_144227933.1\|65050_65860_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_144227936.1\|65936_66506_+	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_144227938.1\|66529_67912_+	hypothetical protein	NA	NA	NA	NA
WP_144227940.1\|67916_68804_+	hypothetical protein	NA	NA	NA	NA
WP_144227942.1\|69109_69676_+	hypothetical protein	NA	NA	NA	NA
WP_144227944.1\|69840_71544_+\|transposase	IS1182 family transposase	A0ZS58	Staphylococcus_virus	4.6e-96	39.7
71469:73299	attR	NA	NA	NA	NA

DBSCAN-SWA_3

81446 : 133414

Staphylococcus_virus(16.67%)

integrase,holin,transposase

attL 65364:65379|attR 112515:112530

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
65364:65379	attL	NA	NA	NA	NA
WP_144227952.1\|81446_83159_+\|transposase	IS1182 family transposase	A0ZS58	Staphylococcus_virus	4.6e-96	39.7
WP_144227954.1\|83161_83608_+	hypothetical protein	NA	NA	NA	NA
WP_144227956.1\|83619_83967_+	hypothetical protein	NA	NA	NA	NA
WP_144227958.1\|84098_84452_+	hypothetical protein	NA	NA	NA	NA
WP_144227960.1\|84487_85294_-	DUF1175 family protein	A0A1V0DZX6	Clostridioides_phage	8.7e-13	35.8
WP_172616847.1\|85370_86135_-	hypothetical protein	NA	NA	NA	NA
WP_144227964.1\|86315_86894_+	hypothetical protein	NA	NA	NA	NA
WP_172616848.1\|86883_87765_+	preprotein translocase subunit SecG	NA	NA	NA	NA
WP_144227968.1\|87775_87937_+	preprotein translocase subunit SecE	NA	NA	NA	NA
WP_144227970.1\|87953_90284_+	preprotein translocase subunit SecA	NA	NA	NA	NA
WP_144227972.1\|90285_90612_+	hypothetical protein	NA	NA	NA	NA
WP_144227974.1\|90598_91885_+	preprotein translocase subunit SecY	NA	NA	NA	NA
WP_144227976.1\|91889_92246_+	hypothetical protein	NA	NA	NA	NA
WP_144227978.1\|92298_92670_+	hypothetical protein	NA	NA	NA	NA
WP_144227980.1\|93008_93443_+	hypothetical protein	NA	NA	NA	NA
WP_144227982.1\|93687_97134_+	MucBP domain-containing protein	NA	NA	NA	NA
WP_144227984.1\|97137_97662_+	hypothetical protein	NA	NA	NA	NA
WP_144227986.1\|97681_98206_+	hypothetical protein	NA	NA	NA	NA
WP_144227987.1\|98699_99155_-	selenium binding protein	NA	NA	NA	NA
WP_172616849.1\|99732_100905_-	ATP-binding protein	NA	NA	NA	NA
WP_144227989.1\|101208_102243_-	DUF1002 domain-containing protein	NA	NA	NA	NA
WP_172616850.1\|102501_102804_+	hypothetical protein	NA	NA	NA	NA
WP_144227991.1\|103074_103695_+\|integrase	tyrosine-type recombinase/integrase	D2XR58	Bacillus_phage	6.3e-19	33.3
WP_144227992.1\|103787_104636_+	hypothetical protein	NA	NA	NA	NA
WP_081306775.1\|104891_104972_-\|holin	putative holin-like toxin	NA	NA	NA	NA
WP_144227993.1\|105155_106103_+	hypothetical protein	NA	NA	NA	NA
WP_144227994.1\|106493_107411_+	HNH endonuclease	NA	NA	NA	NA
WP_144227995.1\|107423_107927_+	SMI1/KNR4 family protein	NA	NA	NA	NA
WP_144227996.1\|108134_108224_+	hypothetical protein	NA	NA	NA	NA
WP_144227997.1\|109061_109736_+	hypothetical protein	NA	NA	NA	NA
WP_144227998.1\|109920_110355_+	hypothetical protein	NA	NA	NA	NA
WP_144227999.1\|110367_110757_+	hypothetical protein	NA	NA	NA	NA
WP_144228068.1\|110876_111203_-	heavy metal-binding domain-containing protein	NA	NA	NA	NA
WP_144228000.1\|111466_112180_+	hypothetical protein	A0A0U4K314	Vibrio_phage	2.2e-07	28.1
WP_144228001.1\|112498_113164_+	hypothetical protein	NA	NA	NA	NA
112515:112530	attR	NA	NA	NA	NA
WP_144228002.1\|113461_114121_-	hypothetical protein	NA	NA	NA	NA
WP_144228003.1\|114264_114912_-	hypothetical protein	NA	NA	NA	NA
WP_144228004.1\|115018_115531_-	DUF559 domain-containing protein	A0A0U4K314	Vibrio_phage	2.4e-08	30.0
WP_172616851.1\|115621_115840_+	hypothetical protein	NA	NA	NA	NA
WP_144228006.1\|117879_118485_-	LysM peptidoglycan-binding domain-containing protein	A0A249XZV3	Enterococcus_phage	7.7e-22	75.3
WP_172616852.1\|118779_119082_+	hypothetical protein	NA	NA	NA	NA
WP_144228008.1\|119253_120306_+	tyrosine recombinase XerS	NA	NA	NA	NA
WP_144228009.1\|120482_122153_+\|transposase	IS1182 family transposase	A0ZS58	Staphylococcus_virus	3.5e-96	40.6
WP_144227774.1\|122226_122655_+\|transposase	IS200/IS605 family transposase	A0A1P8BMC0	Lactococcus_phage	5.2e-49	68.1
WP_144227704.1\|122676_123843_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	Q5ULQ4	Lactobacillus_virus	2.0e-159	72.4
WP_144228010.1\|124163_124934_-	hypothetical protein	NA	NA	NA	NA
WP_144228011.1\|124946_125171_-	glutaredoxin family protein	A0A0M7REK7	Lactobacillus_phage	5.0e-11	42.3
WP_144228012.1\|125398_125944_-	hypothetical protein	NA	NA	NA	NA
WP_144228013.1\|125940_126219_-\|transposase	PD-(D/E)XK nuclease family transposase	NA	NA	NA	NA
WP_144228014.1\|126332_126560_-	hypothetical protein	NA	NA	NA	NA
WP_144228015.1\|126597_127176_-	hypothetical protein	NA	NA	NA	NA
WP_144228016.1\|127424_128363_-	NAD(P)H-binding protein	NA	NA	NA	NA
WP_144228017.1\|128376_129321_-	NmrA family NAD(P)-binding protein	NA	NA	NA	NA
WP_144228018.1\|129453_130812_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_144228019.1\|130933_131347_+	hypothetical protein	NA	NA	NA	NA
WP_144227704.1\|131797_132964_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	Q5ULQ4	Lactobacillus_virus	2.0e-159	72.4
WP_144227774.1\|132985_133414_-\|transposase	IS200/IS605 family transposase	A0A1P8BMC0	Lactococcus_phage	5.2e-49	68.1

DBSCAN-SWA_4

149795 : 151412

Lactobacillus_virus(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_144227704.1\|149795_150962_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	Q5ULQ4	Lactobacillus_virus	2.0e-159	72.4
WP_144227774.1\|150983_151412_-\|transposase	IS200/IS605 family transposase	A0A1P8BMC0	Lactococcus_phage	5.2e-49	68.1

DBSCAN-SWA_5

156778 : 158507

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_144228051.1\|156778_157357_-	antirestriction protein ArdA	A0A142F1K6	Bacillus_phage	5.0e-10	27.9
WP_144228052.1\|157384_157753_-	hypothetical protein	NA	NA	NA	NA
WP_144228053.1\|157772_158033_-	hypothetical protein	NA	NA	NA	NA
WP_144228054.1\|158048_158507_-	hypothetical protein	A0A0A7DMX9	Lactobacillus_phage	1.8e-18	45.9

DBSCAN-SWA_6

164416 : 166033

Lactobacillus_virus(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_144227704.1\|164416_165583_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	Q5ULQ4	Lactobacillus_virus	2.0e-159	72.4
WP_144227774.1\|165604_166033_-\|transposase	IS200/IS605 family transposase	A0A1P8BMC0	Lactococcus_phage	5.2e-49	68.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP041676

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP041676_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041676_1

955266-957082

Orphan

Consensus_repeat	Method
AACTCNGTNTCNATGAGCGANAGCTTNAGNAACTC	CRT

23 spacers

The CRISPR arrays of NZ_CP041676_1

>merge|NZ_CP041676|1|955266-957082|CRT
AACTCAGCAAGCATGAGCGAAAGCTTAAGCAACTCGGTAAGTATGAGTAATTCAGTCTCAATGAGTGAAAGCCTCAGTAACTCGGTAAGTATGAGCGAAAGCTTAAGTAACTCGGTAAGTATGAGCGAAAGCTTAAGCAACTCCGTTTCAATGAGCGAGAGTATGAGCAACTCAGTATCGATGAGCGAGAGCATGAGTAACTCGGTATCAATGAGCGAAAGCTTAAGCAATTCCGTCTCCATGAGCGAAAGCTTGAGTAACTCAGTAAGCATGAGCGAAAGCTTAAGTAACTCAGTATCGATGAGTGAGAGTTTAAGCAACTCAAGCATGAGTAACTCGGTATCGATGAGCGAAAGCTTAAGCAACTCGGTAAGTATGAGTGAAAGTATGAGTAATTCAGTCTCAATGAGTGAAAGCTTAAGCAACTCGGTATCAATGAGCGAAAGCTTAAGTAACTCAGTCTCAATGAGTGAGAGCTTAAGTAACTCCGTTTCAATGAGTGAAAGCTTAAGCAATTCAGTATCGATGAGCGAGAGTTTAAGTAACTCAGTATCAATGAGCGAAAGCTTAAGCAACTCAGTATCGATGAGCGAGAGTATGAGTAACTCAGTAAGCATGAGCGAAAGCTTAAGCAACTCCGTTTCAATCGAGAGTGAGTAACTCTGTCTCAATCAATGGATGTGAAAGTCTCAGCAACTCCGTATCGATGAGCGAAAGCTTGAGTAACTCCGTCTCAATGAGCGAAAGCTTGAGTAACTCAGTCTCAATGAGTGAGAGCTTAAGTAACTCCGTTTCTATGAGTGAGAGCTTAAGTAACTCAGTATCGATGAGCGAGAGCATGAGTAACTCGGTATCGATGAGCGAAAGCTTAAGCAACTCGGTAAGTATGAGTGAAAGTATGAGTAATTCAGTCTCAATGAGTGAAAGCTTAAGCAACTCGGTATCAATGAGCGAAAGCTTAAGTAACTCAGTCTCAATGAGTGAGAGCTTAAGTAACTCCGTTTCAATGAGTGAAAGCTTAAGCAATTCAGTATCGATGAGCGAGAGTTTAAGTAACTCAGTATCAATGAGCGAAAGCTTAAGCAACTCAGTATCGATGAGCGAGAGTATGAGTAACTCAGTAAGCATGAGCGAAAGCTTAAGCAACTCCGTTTCAATGAGCGAGAGTATGAGTAACTCCGTCTCAATGAGCGAAAGCTTAAGTAACTCGGTATCAATGAGTGAAAGTCTCAGCAACTCCGTATCGATGAGCGAAAGCTTGAGTAACTCCGTCTCAATGAGCGAAAGCTTGAGTAACTCAGTCTCAATGAGTGAGAGCTTAAGTAACTCCGTTTCTATGAGTGAGAGCATGAGTAACTCGGTAAGTATGAGCGAAAGCTTAAGTAACTCAGTATCGATGAGCGAGAGCTTGAGTAACTCCGTATCAAACTCCGTTTCAATGAGCGAGAGCATGAGTAACTCGATGAGCTTGAGCAACGAATCGATGAGCGAGAGCTTGAGTAAGTCAATGAAAGCTTTGAGTAACTCCGTCTCAATGAGTGAGAGCTTAAGCAACTCAGTATCGATGAGCGAGAGCTTGAGTAACTCGGTATCAATGAGCGAAAGCTTGAGTAACTCCGTCTCAATGAGTGAGAGTTTAAGCAACTCAGTATCGATGAGCGAAAGCTTGAGTAACTCAGCATGAGCGAAAGTAACTTATCATCGATGAGCGAAAGCTTAAGCAACTCAGTATCGATGAGCGAGAGTATGAGTAACTCAGTAAGCATGAGCGAAAGCTTAAGCAACTCCGTTTCAATGAGCGAGAGTATGAGTAACTC

>NZ_CP041676|1|1|955266-957082|CRT
AACTCAGCAAGCATGAGCGAAAGCTTAAGCAACTC	GGTAAGTATGAGTAATTCAGTCTCAATGAGTGAAAGCCTCAGTAACTCGGTAAGTATGAGCGAAAGCTTAAGT
AACTCGGTAAGTATGAGCGAAAGCTTAAGCAACTC	CGTTTCAATGAGCGAGAGTATGAGCAACTCAGTATCGATGAGCGAGAGCATGAGT
AACTCGGTATCAATGAGCGAAAGCTTAAGCAATTC	CGTCTCCATGAGCGAAAGCTTGAGTAACTCAGTAAGCATGAGCGAAAGCTTAAGT
AACTCAGTATCGATGAGTGAGAGTTTAAGCAACTC	AAGCATGAGTAACTCGGTATCGATGAGCGAAAGCTTAAGCAACTCGGTAAGTATGAGTGAAAGTATGAGT
AATTCAGTCTCAATGAGTGAAAGCTTAAGCAACTC	GGTATCAATGAGCGAAAGCTTAAGT
AACTCAGTCTCAATGAGTGAGAGCTTAAGTAACTC	CGTTTCAATGAGTGAAAGCTTAAGCAATTCAGTATCGATGAGCGAGAGTTTAAGT
AACTCAGTATCAATGAGCGAAAGCTTAAGCAACTC	AGTATCGATGAGCGAGAGTATGAGT
AACTCAGTAAGCATGAGCGAAAGCTTAAGCAACTC	CGTTTCAATCGAGAGTGAGTAACTCTGTCTCAATCAATGGATGTGAAAGTCTCAGC
AACTCCGTATCGATGAGCGAAAGCTTGAGTAACTC	CGTCTCAATGAGCGAAAGCTTGAGT
AACTCAGTCTCAATGAGTGAGAGCTTAAGTAACTC	CGTTTCTATGAGTGAGAGCTTAAGTAACTCAGTATCGATGAGCGAGAGCATGAGT
AACTCGGTATCGATGAGCGAAAGCTTAAGCAACTC	GGTAAGTATGAGTGAAAGTATGAGT
AATTCAGTCTCAATGAGTGAAAGCTTAAGCAACTC	GGTATCAATGAGCGAAAGCTTAAGT
AACTCAGTCTCAATGAGTGAGAGCTTAAGTAACTC	CGTTTCAATGAGTGAAAGCTTAAGCAATTCAGTATCGATGAGCGAGAGTTTAAGT
AACTCAGTATCAATGAGCGAAAGCTTAAGCAACTC	AGTATCGATGAGCGAGAGTATGAGT
AACTCAGTAAGCATGAGCGAAAGCTTAAGCAACTC	CGTTTCAATGAGCGAGAGTATGAGT
AACTCCGTCTCAATGAGCGAAAGCTTAAGTAACTC	GGTATCAATGAGTGAAAGTCTCAGC
AACTCCGTATCGATGAGCGAAAGCTTGAGTAACTC	CGTCTCAATGAGCGAAAGCTTGAGT
AACTCAGTCTCAATGAGTGAGAGCTTAAGTAACTC	CGTTTCTATGAGTGAGAGCATGAGTAACTCGGTAAGTATGAGCGAAAGCTTAAGT
AACTCAGTATCGATGAGCGAGAGCTTGAGTAACTC	CGTATCAAACTCCGTTTCAATGAGCGAGAGCATGAGTAACTCGATGAGCTTG
AGCAACGAATCGATGAGCGAGAGCTTGAGTAAGTC	AATGAAAGCTTTGAGTAACTCCGTCTCAATGAGTGAGAGCTTAAGC
AACTCAGTATCGATGAGCGAGAGCTTGAGTAACTC	GGTATCAATGAGCGAAAGCTTGAGTAACTCCGTCTCAATGAGTGAGAGTTTAAGC
AACTCAGTATCGATGAGCGAAAGCTTGAGTAACTC	AGCATGAGCGAAAGTAACTTATCATCGATGAGCGAAAGCTTAAGC
AACTCAGTATCGATGAGCGAGAGTATGAGTAACTC	AGTAAGCATGAGCGAAAGCTTAAGC
AACTCCGTTTCAATGAGCGAGAGTATGAGTAACTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041676.1\|WP_135951630.1\|965372_965609_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041676.1\|WP_144226827.1\|935541_937896_+\|accessory-Sec-system-translocase-SecA2	unknown	unknown	gnl\|CDD\|163426
NZ_CP041676.1\|WP_003665716.1\|933160_934648_+\|accessory-Sec-system-protein-Asp2	unknown	unknown	gnl\|CDD\|379903
NZ_CP041676.1\|WP_172616800.1\|945225_945618_+\|serine-rich-glycoprotein-adhesin	unknown	unknown	unknown
NZ_CP041676.1\|WP_066036015.1\|940763_940961_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041676.1\|WP_135951633.1\|967239_967638_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
NZ_CP041676.1\|WP_144226842.1\|961039_962869_+\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|366411
NZ_CP041676.1\|WP_144226838.1\|957637_958135_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|185285
NZ_CP041676.1\|WP_144226798.1\|943608_944991_+\|group-II-intron-reverse-transcriptase/maturase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
NZ_CP041676.1\|WP_003663509.1\|963268_964771_+\|glycerol-kinase-GlpK	unknown	unknown	gnl\|CDD\|234594
NZ_CP041676.1\|WP_144227737.1\|958397_959432_+\|LPXTG-cell-wall-anchor-domain-containing-protein	unknown	unknown	gnl\|CDD\|380149
NZ_CP041676.1\|WP_144226439.1\|951876_952845_+\|IS30-family-transposase	unknown	unknown	gnl\|CDD\|225382
NZ_CP041676.1\|WP_144226840.1\|959498_960902_-\|C69-family-dipeptidase	unknown	unknown	gnl\|CDD\|335383
NZ_CP041676.1\|WP_144226829.1\|937908_939447_+\|accessory-Sec-system-glycosyltransferase-GtfA	unknown	unknown	gnl\|CDD\|131964
NZ_CP041676.1\|WP_144226831.1\|939439_940771_+\|accessory-Sec-system-glycosylation-chaperone-GtfB	unknown	unknown	gnl\|CDD\|274351
NZ_CP041676.1\|WP_035169163.1\|964816_965329_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041676.1\|WP_066036078.1\|966410_967133_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041676.1\|WP_065533034.1\|962948_963134_+\|4-oxalocrotonate-tautomerase	unknown	unknown	gnl\|CDD\|235013
NZ_CP041676.1\|WP_172616837.1\|947391_951642_+\|LPXTG-cell-wall-anchor-domain-containing-protein	unknown	unknown	gnl\|CDD\|237863
NZ_CP041676.1\|WP_066036019.1\|934650_935538_+\|accessory-Sec-system-protein-Asp3	unknown	unknown	gnl\|CDD\|379726

Protein	Function_ID	Function_description	E-value
NZ_CP041676.1\|WP_144226827.1\|935541_937896_+\|accessory-Sec-system-translocase-SecA2	gnl\|CDD\|163426	TIGR03714, Protein_translocase_subunit_SecA_2, accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. [Protein fate, Protein and peptide secretion and trafficking].	0
NZ_CP041676.1\|WP_003665716.1\|933160_934648_+\|accessory-Sec-system-protein-Asp2	gnl\|CDD\|379903	pfam16929, Asp2, Accessory Sec system GspB-transporter. Asp2 is a family of the SecA2/Y2 accessory Sec secretory system of Gram-positive bacteria. It is specific for large serine-rich repeat, cell-wall-anchored, glycoproteins such as GspB. Export of GspB requires the three Asp1-Asp3 proteins. Asp2, in conjunction with Asp3, probably acts as a chaperone in the early stage of GspB transport.	2.80936e-146
NZ_CP041676.1\|WP_066036019.1\|934650_935538_+\|accessory-Sec-system-protein-Asp3	gnl\|CDD\|379726	pfam15432, Sec-ASP3, Accessory Sec secretory system ASP3. Sec-ASP3 is family of bacterial proteins involved in the Sec secretory system. The family forms part of the accessory SecA2/SecY2 system specifically required to export GspB, a serine-rich repeat cell-wall glycoprotein adhesin encoded upstream in the same operon.	1.26327e-38
NZ_CP041676.1\|WP_135951633.1\|967239_967638_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	1.32587e-08
NZ_CP041676.1\|WP_144226842.1\|961039_962869_+\|cation:proton-antiporter	gnl\|CDD\|366411	pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family. Na/H antiporters are key transporters in maintaining the pH of actively metabolising cells. The molecular mechanisms of antiport are unclear. These antiporters contain 10-12 transmembrane regions (M) at the amino-terminus and a large cytoplasmic region at the carboxyl terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family.	6.21515e-48
NZ_CP041676.1\|WP_144226838.1\|957637_958135_-\|hypothetical-protein	gnl\|CDD\|185285	PRK15387, PRK15387, type III secretion system effector E3 ubiquitin transferase SspH2.	2.3065e-06
NZ_CP041676.1\|WP_144226798.1\|943608_944991_+\|group-II-intron-reverse-transcriptase/maturase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	9.74574e-175
NZ_CP041676.1\|WP_003663509.1\|963268_964771_+\|glycerol-kinase-GlpK	gnl\|CDD\|234594	PRK00047, glpK, glycerol kinase GlpK.	0
NZ_CP041676.1\|WP_144226439.1\|951876_952845_+\|IS30-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	3.9438e-44
NZ_CP041676.1\|WP_144226840.1\|959498_960902_-\|C69-family-dipeptidase	gnl\|CDD\|335383	pfam03577, Peptidase_C69, Peptidase family C69.	1.65596e-155
NZ_CP041676.1\|WP_144226829.1\|937908_939447_+\|accessory-Sec-system-glycosyltransferase-GtfA	gnl\|CDD\|131964	TIGR02918, lipopolysaccharide_biosynthesis_protein, accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system. [Protein fate, Protein modification and repair].	0
NZ_CP041676.1\|WP_144226831.1\|939439_940771_+\|accessory-Sec-system-glycosylation-chaperone-GtfB	gnl\|CDD\|274351	TIGR02919, conserved_hypothetical_protein, accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. [Protein fate, Protein modification and repair].	9.78147e-175
NZ_CP041676.1\|WP_065533034.1\|962948_963134_+\|4-oxalocrotonate-tautomerase	gnl\|CDD\|235013	PRK02220, PRK02220, 4-oxalocrotonate tautomerase; Provisional.	2.59133e-28
NZ_CP041676.1\|WP_172616837.1\|947391_951642_+\|LPXTG-cell-wall-anchor-domain-containing-protein	gnl\|CDD\|237863	PRK14949, PRK14949, DNA polymerase III subunits gamma and tau; Provisional.	6.93326e-12
NZ_CP041676.1\|WP_144227737.1\|958397_959432_+\|LPXTG-cell-wall-anchor-domain-containing-protein	gnl\|CDD\|380149	NF012181, MSCRAMM_SdrD, MSCRAMM family adhesin SdrD. Features of this protein family include a YSIRK-type signal peptide at the N-terminus and a variable-length C-terminal region of Ser-Asp (SD) repeats followed by an LPXTG motif for surface immobilization by sortase.	4.52209e-12

>NZ_CP041676.1|WP_144226439.1|951876_952845_+|IS30-family-transposase
MTYKHLTTRELTLIADFWYQGTKAYRAAKLLQRSQETIYRVYRFLNNGKTIDQYLQTYQRHKRRCGRKQTQLPTIEVNYIHAQIKAGWTPDTIIGRDEHPISCSMRTLYRMFARNQYGFSVKQLPMKGKRHPNGYVERRGKTGQLGRSIYQRYRDFPHYQHEFGHFEADTVQGKAHRGAVMTLVERQSKVMIVLNIHHKTDEAVNCQLDQWLAKLPRHFVKSITFDNGKEFAGWREIANKYDLHTYFAEVGAPNQRGLNENNNGILRRDGLSKKLDFRHLPNELVTQLMHRRNNIPRKSLNYRTPLEVFMSYVTEEQLSTFF
>NZ_CP041676.1|WP_172616837.1|947391_951642_+|LPXTG-cell-wall-anchor-domain-containing-protein
MATSQLNAVNTNSTSTVVYQGSTVISQSISTSVEQSQSASAEQSQSASSSESIVQSQSRSTSTSESLSGSISEAMSESASTSLSQSESASTSLSQSESASTSLSQSESASTSLSQSESTSASVSASESTSASVSASESTSASVSASESTSASVSASESTSASVSASESTSASVSASESTSASVSASESTSASVSASESTSASVSASESTSASVSASESTSASVSASESISASVSASESTSASASASESTSASVSASESTSASVSASESISASASASESTSASVSASESTSASVSASESTSASVSASESTSASVSASGSTSASVSASESTSASVSASESTSASVSASESTSASVSASESTSASVSASESTSASVSASESASASVSASESTSTSVSASESTSASVSASESTSASVSASESTSASVSASESTSASVSASESASTSLSASESTSASVSASESASASVSASESTSTSVSASESTSASVSASESTSASVSASESTSASVSASESTSASVSASESTSASVSASESTSASVSASESASTSLSASESTSASVSASESTSASVSASESISASVSASESTSASVSASESTSASVSASESTSASASASESTSASVSASESTSASVSASESTSASVSASESTSASVSASGSTSASVSASESTSASVSASESTSASVSASESTSASVSASESTSASVSASESTSASVSASESASASVSASESTSTSVSASESTSASVSASESTSASVSASESTSASVSASESTSASVSASESASTSLSASESTSASVSASESASASVSASESTSTSVSASESTSASVSASESTSASVSASESTSASVSASESTSASVSASESTSASVSASESTSASVSASESASTSLSASESTSASVSASESTSASVSASESISASVSASESTSASVSASESTSASVSASESTSASVSASESTSASVSASESTSASVSASESTSASVSASESTSASVSASESTSASVSASESASTSLSASESTSASVSASESTSASVSASESTSASVSASESTSASVSASESTSVSVSASESTSASVSASGSTSASVSASESTSASVSASESTSASVSANESTSASVSASESASTSLSASESTSASVSASESTSASVSASESTSASVSASESTSASVSASESTSASVSASESTSAFVSASESASTSLSASESTSASVSASESTSASVSASESTSASVSASESTSASVSASESTSTSVSASESTSASVSASESTSVSVSASESTSASVSASESTSVSASSSTSISDSGSTSLSASDSTSTSISGSSSNGSESTSGSQSPVTPFPDNSGSTSMSTNGSGNGSISLSLSITNSTNTASLENTSASVTDKHMTVDLTAQNSVENGNANKPSQQNKRLPQTGNASQTTAELLGLMSLEAVLLLLIAKKKKNSEDQ
>NZ_CP041676.1|WP_172616800.1|945225_945618_+|serine-rich-glycoprotein-adhesin
MSKRKNEQESGSKVKLYKTKHGWFSALTRFFKLFSFRSKKEVKPTNFNDLDSLKDKHDSAIPDAYKKGAATMATLLGAGVIGTTSPTEAHAATTTVDQNSHVVGSGSTSTSTSTSQMTGSTSTSTSTTSG
>NZ_CP041676.1|WP_144226798.1|943608_944991_+|group-II-intron-reverse-transcriptase/maturase
MRQSQKTEQQADRLSRIGLENRKYTRARSTDYGEGKGISVTIQDLVLDRNNLNQAYLRVKRNKGAAGIDDMTVNDLLPYLRENKTELIASLREGKYKPAPVKRVEIPKPNGGVRKLGIPTVVDRMVQQAVAQILTPIFERVFSDNSFGFRPHRGAHDAIAKVVDLYNQGYRRVVDLDLKAYFDNVNHDLMIKYLQQYIDDPWTLRLIRKFLTSGVLDHGLFAKSEKGTPQGGPLSPLLANIYLNELDKELTRRGHHFVRYADDCNIYVKSQRAGERVMRSITQFLEKRLKVKVNSDKTKVGSPLRLKFLGFSLGADHNGAYARPAKQSQQRIKKALKLLTKRNRGISLTRMFEEIQRKMRGWLQYYSIGKLTDFIQRLDKWLRARIRQYIWKQWKKLKTKVTNLQKLGLSQRDAYVFASTRKGYWRTAHSKTLSYSLTNRKLEQLGLMNMSKTLQSIQSD
>NZ_CP041676.1|WP_066036015.1|940763_940961_+|hypothetical-protein
MTKQDENHPKPSLAQQDALKRLDQVEEEKRKPYKKKKEPVNFRSIIMTLLLILILGLMIGNYFVH
>NZ_CP041676.1|WP_144226831.1|939439_940771_+|accessory-Sec-system-glycosylation-chaperone-GtfB
MLNLFDNFDQASFDLLRSQRSAQIKIPTVVINDDGFLPAEVESPIKFLGQYNKNRSPLYFDQIPVPKYWRILSTASQGEIYDLDQKRADIFYHSTDNSRQVKEVRWLDRYGKINWVDHYNRNGYQFATTFYENGQPTWRKYYNKHQEVFLTWNLRVGGLFLTEDGRKHYFNSWIEFVKYYLTARHFKLDHVFYNTLNQGLNVTMALPDNGTDTLFWHEPLTGDELPGNMQFLMEHSTRTKHIIFQRYADWQRMKSVLTDNEYVDFSYLGTIYPHPRGNQLRPEALIFTNSDEIVELATLVKQLPQVKFHIAAVTEMSEKLLSYQQYSNVELYPNVSRQRVKQLIADCDIYLDINRQNEILDAVRGAFEQNMLILGFDETLHEAQFVAPQNVFKVTEAKQMGEQILNALLKPALMKELIDTQRKLASEVSVQDYRDQIGALKHD
>NZ_CP041676.1|WP_144226829.1|937908_939447_+|accessory-Sec-system-glycosyltransferase-GtfA
MTVYNINLGIGWASSGVEYAQAYRAQAFRQAKIPAKFIFSDLILGNNIADLTENIGFDDQQIIWLYNFFTDIKIAPSTYPLSSFLEQEQLTQRNFKLQADSGTKEIRYQSDQEAVTIIPRYNDREKQTIDQVSYVANNLLIKRDFYSYKKYATEYYSGDAQDNHVVFREFYNEDGSIAYTQHLDSNKQELFEFPQQYFYTKTDLYREMLRQLDFKADDTIILDRMDEDKQLVNGQLIFAHHGQAKLFVAVHADHYDKHYTNDHQVLWNNFYEYQFTHYDDVDCFIVATDQQQQLLSKQLKHYYHAQPEITTIPVGSLDKLVKPTDQRKPHSLITASRLANEKHIDWLVSAVVAARKVIPDVMLDIYGAGSQAGRLQELITKNHADDYIKLMGQHDLSQVYQQYETYIAGSTSEGFGLSLLEAVGSGLSMIGFDVPYGNQTFIDDQQNGYLLPYEEDWNNDKKEKALTDAIIKTFSTADLTKFHEHSYALAEPYLTTNVAEQWQHLLKEETHA
>NZ_CP041676.1|WP_144226827.1|935541_937896_+|accessory-Sec-system-translocase-SecA2
MTHPNFRLQKVKHTLAKVNALASEMRGMSDEELKHQTVLLKKELANGKTVDDILPRAFAAIREADYRILGMFPYDVQVMGAIVLNQGNIAEMKTGEGKTLTATMPLYLNALTGKGAMLLTPNGYLAQRDKEQLQPVYEWLGLTVSLGFEPDDQEKKTTPAIKRSWYNADITYTTASSLAFDYLFNNLATRREDQYLRPFNYVIIDEVDAILLDEATSPFVVSSRPTVQSNLYGLADEFVHTLHPKIDYKLNEDQDAVWLTLHGIRQAQRFFRIPDLFVSETREIYRHIALALRAHFIMKNGHDYLVSEGEVVLLDEANGRLKRGVRVNTGLHQAIEAKEHVDLTPNQQVAASITFPSLFGLFNKISGMSGTAKSDEHEFFEVYKMRVIQIPTRKPVIRRDYPGEIYVTTRQKLIHALDEAIDLHKAGRPILLVAGSVENSEIISELLLDHGIPHNVLNAFNVAREAAIVKDAGQKGAVTVATNMAGRGTDIKLGAGVKELGGLAVIGTEMLPTRVKLQLAGRAGRQGDPGSSKFYISLEDSYLAQNSTKRFKNYYRRLQRRSTNKRLKSPRLKMSITMLKDRVAANQQMSRSNVNKNEAALKIQRRNLYQQRDQLMDNPHLEKVVGKWLHRGIALYLATKPQWNAHDLRRLMNQHFTYEIVKLPTDLEYTTASLQTYLEQFCQTTLKKHAKILINNQQLNQFYRTALLNALDSSWMDQMDYLSKLTTRVQPWGNTQRNPNFLYQEKAYQAFEKMFDHAAQKTVDNLMLSTISLDDDNNLVVHFN
>NZ_CP041676.1|WP_066036019.1|934650_935538_+|accessory-Sec-system-protein-Asp3
MQQYVNQGYWEPTSEYSAGSQIKINDDASVEFHNSLMAPGKTIMSWNSINSYQATKLVPQLPILRNNHKYRLSVNAKAEPIYSLIIRLTFFDAQEHEIDHVEFQQRSIEFVYPPEAVQYRLELINNGLTDLTFQRFEICDADLPVSVHEDVWIHQPINEDVKGKLNLLLIADNKRVRKTYPDLKKYEDYKIQPISVAWQSSADVVAILKQWLISHRIYDANVISTNPKLDQAVLELKMELSTINAVITNQTDPHSQIADVIYPLLPATTWSSPVLVNPDWPIIFSVIQEINSKEG
>NZ_CP041676.1|WP_003665716.1|933160_934648_+|accessory-Sec-system-protein-Asp2
MQVLQLGAENWADKYQLPSEIKWNYNQYPLKKIKQFDLVIITPGTKLADHLWKKLQWQVDPYRVLYDPLAEKELSPVGQHFLICQEARQIVEDPQELINQLPVRYFSGQSGMRIPPTNILLNSVDSTLLDGGHLRVTVDSDRWVKIGNYRQQIYIDPNRLLKFNLEYDRKANVKVRLRFFIQEDGGDGNLANNYLLDFSENNEEQLLPLKPADMRRFTSASIEVMGKGQVTIGMLHSRWSRAGKGEFLPGGRRLIDPATGADIAYYFNPGDLRPPLHVYFSGARGLEGFEAYPLFRRNHTPTLLFTDPRLAVGQFYTGEAIESQIKATIIATLKKLGFNRQQLVMNGISMGTYPAIKLGAQLSAYAINVAKPTVNLGRVAMRARLQRPDEFDTIFDIDRQLVSELTTTQLTQLDTDFWKLMDQNNLTNTRFYVGYMANDDYDDLAVPRMKANKAIQQVPLFVNKGFPGRHNDDPSVVYWFVSRLAEINQAFGRGD
>NZ_CP041676.1|WP_144226838.1|957637_958135_-|hypothetical-protein
MLTELLILSLIDTELLKLSLIDTELLRLSLIDTELLKLSLMETELLKLSLMLTELLELSLIDTELLKLSLIETELLMLSLIETELLKLSLIDTELLMLSLIETELLKLSLIETELLKLSLIETELLKLSLMLTELLILSLIDTELLKLSLMLTELLKLSLIDTEL
>NZ_CP041676.1|WP_144227737.1|958397_959432_+|LPXTG-cell-wall-anchor-domain-containing-protein
MSNSVSMSESLSNSVSMSESLSNSVSMSESLSNSVSMSESLSNSVSMSESLSNSVSMSESLSNSVSMSESLSNSVSMSESLSNSVSMSESLRNSVSMSESLSNSVSMSESLSNSVSMSESLSNSVSMSESLSNSASLSTSESVSTSISGSTSDSAVTPHPDNPSESISDSVSMSISTSESISISSSTSASTSASLSPSTSGSTSINPSDSTSTSMSGSSSNGSESTSGSQSPVTPFPDNSGSTSMPTNGSGNGSISLSLSITNSKNASGLENTNTSVADKHTTVDLTAQNSVENSNVNKASQQNKRLPQTGNASQTTAELLGLMSLEAILLLLIAKKKKHNEDK
>NZ_CP041676.1|WP_144226840.1|959498_960902_-|C69-family-dipeptidase
MGNKLTACTSILIGKGASIDGTIMIGRNEDVKAAWPKHMVVHRRGEMPSHFISKDTRLELDLPEESAQYTATPEWTDKDGLFEEDGINEYDVAMSATESAYSNPLVLGYDPLVENGLNEEAMITVVLPYVKTAREGVQRLGNLIAKYGTGETNGVLFADNDEAWYFETGAGHYWVAQRIPDDSYAVVANQLAIQEIDFNDPNNFMFHPGIQEFVEKHDLNPDPSTFNFRKIFGTADRSDAIYSEPRVWAGHQMFSPRQATEETPESTELPFIMKPDHKLSIFDAQNYLSNHYEGTEFDPLGHGEYAHKYRPISLAKTQESHILQTSRPGANIHWLAMGVAAESTYVPFFNGITDTPAPYKRGKLPAQLNSAYWIFKHASVLVDSHLHDFLPLLRDVQKERNAAAIKMIAETDRRLPSLKGEARATFLTRQSDGYATDTLNAYKKLSLELITKMTDYCELNFNTDENL
>NZ_CP041676.1|WP_144226842.1|961039_962869_+|cation:proton-antiporter
MQQLSLLIVMLAALIIPIIMARFKVSSIPTAIAEILTGIILGKSFFSIVNPNWTLNFLSSLGVIMLMFLSGMEINFDLFRKTPGKKRDSKSPVIMASQAFGLIVVSSFVIALIISRLHLFSDVLLATIIFSTVALGVVIATLKEKDILQKPVGQTLLLTAVLGEVVPMLALTFYASINGGNAKRLGLIVFLFLAAFFLLRRFKQPFIWFNKISKSTTQLDIRLAFFLIFALVTIAETVGAENILGAFLAGMVMKLLEPSEATEDRLNSIGYGFLIPFFFIMTGDRLDLKNLFANHQALALIPILVIGFLLAKLPTMFIYRRRFKPRNSFAGSFLVATTITLVLPTLQVARNLHAITSAQSDAFTLAAVIVCIIAPIVFNSMYKLEKSDLIKQKVNFIGTNTLTVPISQQLYKNWYDVRMVTDNENNFKTYNSQVKHLEYLPKLDAEALKQGGYFDCDIVVVGFLNDHKSARLAQIAKEHGVKRVIASQNNPRLDPKDVSALREKGIEIFNSFNVQSSVLRALIESPLILQMLTDTEAGLYEATVLNSRYTGRELHTLPFVNNITISRIFRKRKPIAPHGDTIIEYGDHILFTGDRKAAEEVREALRGVN
>NZ_CP041676.1|WP_065533034.1|962948_963134_+|4-oxalocrotonate-tautomerase
MPLVHIDLIEGRTDEQLKALVKDVTAAISKNANVPAERVHIVLNEMRKDRYSVAGKMVSDK
>NZ_CP041676.1|WP_003663509.1|963268_964771_+|glycerol-kinase-GlpK
MSEQQYIMAIDQGTTSSRAIIFDHDGNKVAISQQEFPQYFPQPGWVEHDPLEIWDSVQSVISNVMIKSQIKPYKIAAIGITNQRETTVIWDRHTGKPIYNAIVWQSKQTSDIAEQLIKDGYKDMIHKKTGLVIDSYFAATKIKWILDHVPGAREKAAKGDLMFGTIDTWLLWNLSGRRVHATDVTNASRTMLFNIHTLEWDQDILDLLDIPQSLLPEVKPSSAIYGYTGDYHFYGVQIPIAGIAGDQQAALFGQAAYDKGSIKNTYGTGAFIVMNTGLKPTLSDNGLLTTIAYGLDGQTHYALEGSIFVAGSAVQWLRDGLKMFDKASESEQMAVDAKTTGGVYVVPAFTGLGAPYWDQEVRGAMFGLTRGTERGHIIRATLEAIAYQTKDVVDTMVKDTQLPLTALTVNGGASRNNFMMQFQADILQTPIKRAAMEETTALGAAFLAGLAVDFWEDQDELRKLSRIGDQFDPQMDPQKAADLYRGWQRAIAAAQFYGKD
>NZ_CP041676.1|WP_035169163.1|964816_965329_+|hypothetical-protein
MREMKMKTPVQMTDDLAHFIKETREDAAFPHESLYVDLLEQWKVLSRYQLEYADKESKRLYNAYWNSMSHWYKIFDKEREHLLEPTALPSEELMDFYSGLIEDLMDHVLSLVPPSPHSTIIKLTDFRVLLSNELQKITQLDLGIQGPIDFAMIMDYWKMLGESFDREKIK
>NZ_CP041676.1|WP_135951630.1|965372_965609_-|hypothetical-protein
MEKHEIDHQAKWLHIKYDGEDRDDECVNELSIYQNADESELQMLVSNIDFDNVSHDNTFALTKEDAKVLIDYLQKWIE
>NZ_CP041676.1|WP_066036078.1|966410_967133_+|hypothetical-protein
MVRKIIDMSMLDKLKIDGEVANYLVQWDNTLLLTAYDQNRTFVLTIDGEQLLIRERLKDVLSRFAQANLIYEYEMEVHFAKVGCQTRGYVAGHHRLVPTCGSSNEQVIYYMVHLMEDASELESDKRVEMIMNGREGDKYHIQIATSERTFRRIVSAADEVAKEQLSLFEYWMYRLGKVKREIFERTYFGDYCVYTKLRKLALDLFIRTVLHILNKAHKKVYGEETPAELVKEVKRVINKF
>NZ_CP041676.1|WP_135951633.1|967239_967638_+|helix-turn-helix-transcriptional-regulator
MTEKKDECGVKYTLDVLEGRWQPRIIFWLGFRPFTIEELHQLLPDLTDVALKKEITSLQNLRIVNPVVDEENKYSLTDDGNDLRNMVLTISVWGRQQMDDSANRVSTQIVEPEKDASMSELIKYNEQLNKYM

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP041676_1	1.7\|955844\|25\|NZ_CP041676\|CRT	955844-955868	25	NZ_CP041676.1	957707-957731	0	1.0
NZ_CP041676_1	1.7\|955844\|25\|NZ_CP041676\|CRT	955844-955868	25	NZ_CP041676.1	958097-958121	0	1.0
NZ_CP041676_1	1.14\|956355\|25\|NZ_CP041676\|CRT	956355-956379	25	NZ_CP041676.1	957707-957731	0	1.0
NZ_CP041676_1	1.14\|956355\|25\|NZ_CP041676\|CRT	956355-956379	25	NZ_CP041676.1	958097-958121	0	1.0
NZ_CP041676_1	1.15\|956415\|25\|NZ_CP041676\|CRT	956415-956439	25	NZ_CP041676.1	958168-958192	0	1.0
NZ_CP041676_1	1.16\|956475\|25\|NZ_CP041676\|CRT	956475-956499	25	NZ_CP041676.1	958037-958061	0	1.0
NZ_CP041676_1	1.16\|956475\|25\|NZ_CP041676\|CRT	956475-956499	25	NZ_CP041676.1	958439-958463	0	1.0
NZ_CP041676_1	1.16\|956475\|25\|NZ_CP041676\|CRT	956475-956499	25	NZ_CP041676.1	958499-958523	0	1.0
NZ_CP041676_1	1.16\|956475\|25\|NZ_CP041676\|CRT	956475-956499	25	NZ_CP041676.1	958559-958583	0	1.0
NZ_CP041676_1	1.23\|957023\|25\|NZ_CP041676\|CRT	957023-957047	25	NZ_CP041676.1	957677-957701	0	1.0
NZ_CP041676_1	1.23\|957023\|25\|NZ_CP041676\|CRT	957023-957047	25	NZ_CP041676.1	957737-957761	0	1.0
NZ_CP041676_1	1.7\|955844\|25\|NZ_CP041676\|CRT	955844-955868	25	NZ_CP041676.1	955241-955265	1	0.96
NZ_CP041676_1	1.9\|955995\|25\|NZ_CP041676\|CRT	955995-956019	25	NZ_CP041676.1	957767-957791	1	0.96
NZ_CP041676_1	1.9\|955995\|25\|NZ_CP041676\|CRT	955995-956019	25	NZ_CP041676.1	958258-958282	1	0.96
NZ_CP041676_1	1.9\|955995\|25\|NZ_CP041676\|CRT	955995-956019	25	NZ_CP041676.1	958409-958433	1	0.96
NZ_CP041676_1	1.14\|956355\|25\|NZ_CP041676\|CRT	956355-956379	25	NZ_CP041676.1	955241-955265	1	0.96
NZ_CP041676_1	1.17\|956535\|25\|NZ_CP041676\|CRT	956535-956559	25	NZ_CP041676.1	957767-957791	1	0.96
NZ_CP041676_1	1.17\|956535\|25\|NZ_CP041676\|CRT	956535-956559	25	NZ_CP041676.1	958258-958282	1	0.96
NZ_CP041676_1	1.17\|956535\|25\|NZ_CP041676\|CRT	956535-956559	25	NZ_CP041676.1	958409-958433	1	0.96
NZ_CP041676_1	1.23\|957023\|25\|NZ_CP041676\|CRT	957023-957047	25	NZ_CP041676.1	957977-958001	1	0.96
NZ_CP041676_1	1.5\|955694\|25\|NZ_CP041676\|CRT	955694-955718	25	NZ_CP041676.1	957131-957155	2	0.92
NZ_CP041676_1	1.7\|955844\|25\|NZ_CP041676\|CRT	955844-955868	25	NZ_CP041676.1	958679-958703	2	0.92
NZ_CP041676_1	1.9\|955995\|25\|NZ_CP041676\|CRT	955995-956019	25	NZ_CP041676.1	958007-958031	2	0.92
NZ_CP041676_1	1.12\|956205\|25\|NZ_CP041676\|CRT	956205-956229	25	NZ_CP041676.1	957131-957155	2	0.92
NZ_CP041676_1	1.14\|956355\|25\|NZ_CP041676\|CRT	956355-956379	25	NZ_CP041676.1	958679-958703	2	0.92
NZ_CP041676_1	1.17\|956535\|25\|NZ_CP041676\|CRT	956535-956559	25	NZ_CP041676.1	958007-958031	2	0.92

1. spacer 1.7|955844|25|NZ_CP041676|CRT matches to position: 957707-957731, mismatch: 0, identity: 1.0

agtatcgatgagcgagagtatgagt	CRISPR spacer
agtatcgatgagcgagagtatgagt	Protospacer
*************************

2. spacer 1.7|955844|25|NZ_CP041676|CRT matches to position: 958097-958121, mismatch: 0, identity: 1.0

agtatcgatgagcgagagtatgagt	CRISPR spacer
agtatcgatgagcgagagtatgagt	Protospacer
*************************

3. spacer 1.14|956355|25|NZ_CP041676|CRT matches to position: 957707-957731, mismatch: 0, identity: 1.0

agtatcgatgagcgagagtatgagt	CRISPR spacer
agtatcgatgagcgagagtatgagt	Protospacer
*************************

4. spacer 1.14|956355|25|NZ_CP041676|CRT matches to position: 958097-958121, mismatch: 0, identity: 1.0

agtatcgatgagcgagagtatgagt	CRISPR spacer
agtatcgatgagcgagagtatgagt	Protospacer
*************************

5. spacer 1.15|956415|25|NZ_CP041676|CRT matches to position: 958168-958192, mismatch: 0, identity: 1.0

cgtttcaatgagcgagagtatgagt	CRISPR spacer
cgtttcaatgagcgagagtatgagt	Protospacer
*************************

6. spacer 1.16|956475|25|NZ_CP041676|CRT matches to position: 958037-958061, mismatch: 0, identity: 1.0

ggtatcaatgagtgaaagtctcagc	CRISPR spacer
ggtatcaatgagtgaaagtctcagc	Protospacer
*************************

7. spacer 1.16|956475|25|NZ_CP041676|CRT matches to position: 958439-958463, mismatch: 0, identity: 1.0

ggtatcaatgagtgaaagtctcagc	CRISPR spacer
ggtatcaatgagtgaaagtctcagc	Protospacer
*************************

8. spacer 1.16|956475|25|NZ_CP041676|CRT matches to position: 958499-958523, mismatch: 0, identity: 1.0

ggtatcaatgagtgaaagtctcagc	CRISPR spacer
ggtatcaatgagtgaaagtctcagc	Protospacer
*************************

9. spacer 1.16|956475|25|NZ_CP041676|CRT matches to position: 958559-958583, mismatch: 0, identity: 1.0

ggtatcaatgagtgaaagtctcagc	CRISPR spacer
ggtatcaatgagtgaaagtctcagc	Protospacer
*************************

10. spacer 1.23|957023|25|NZ_CP041676|CRT matches to position: 957677-957701, mismatch: 0, identity: 1.0

agtaagcatgagcgaaagcttaagc	CRISPR spacer
agtaagcatgagcgaaagcttaagc	Protospacer
*************************

11. spacer 1.23|957023|25|NZ_CP041676|CRT matches to position: 957737-957761, mismatch: 0, identity: 1.0

agtaagcatgagcgaaagcttaagc	CRISPR spacer
agtaagcatgagcgaaagcttaagc	Protospacer
*************************

12. spacer 1.7|955844|25|NZ_CP041676|CRT matches to position: 955241-955265, mismatch: 1, identity: 0.96

agtatcgatgagcgagagtatgagt	CRISPR spacer
agtatcgatgagtgagagtatgagt	Protospacer
************.************

13. spacer 1.9|955995|25|NZ_CP041676|CRT matches to position: 957767-957791, mismatch: 1, identity: 0.96

cgtctcaatgagcgaaagcttgagt	CRISPR spacer
cgtttcaatgagcgaaagcttgagt	Protospacer
***.*********************

14. spacer 1.9|955995|25|NZ_CP041676|CRT matches to position: 958258-958282, mismatch: 1, identity: 0.96

cgtctcaatgagcgaaagcttgagt	CRISPR spacer
cgtttcaatgagcgaaagcttgagt	Protospacer
***.*********************

15. spacer 1.9|955995|25|NZ_CP041676|CRT matches to position: 958409-958433, mismatch: 1, identity: 0.96

cgtctcaatgagcgaaagcttgagt	CRISPR spacer
cgtctcaatgagcgaaagcttaagt	Protospacer
*********************.***

16. spacer 1.14|956355|25|NZ_CP041676|CRT matches to position: 955241-955265, mismatch: 1, identity: 0.96

agtatcgatgagcgagagtatgagt	CRISPR spacer
agtatcgatgagtgagagtatgagt	Protospacer
************.************

17. spacer 1.17|956535|25|NZ_CP041676|CRT matches to position: 957767-957791, mismatch: 1, identity: 0.96

cgtctcaatgagcgaaagcttgagt	CRISPR spacer
cgtttcaatgagcgaaagcttgagt	Protospacer
***.*********************

18. spacer 1.17|956535|25|NZ_CP041676|CRT matches to position: 958258-958282, mismatch: 1, identity: 0.96

cgtctcaatgagcgaaagcttgagt	CRISPR spacer
cgtttcaatgagcgaaagcttgagt	Protospacer
***.*********************

19. spacer 1.17|956535|25|NZ_CP041676|CRT matches to position: 958409-958433, mismatch: 1, identity: 0.96

cgtctcaatgagcgaaagcttgagt	CRISPR spacer
cgtctcaatgagcgaaagcttaagt	Protospacer
*********************.***

20. spacer 1.23|957023|25|NZ_CP041676|CRT matches to position: 957977-958001, mismatch: 1, identity: 0.96

agtaagcatgagcgaaagcttaagc	CRISPR spacer
agtaagcatgagcgaaagcttgagc	Protospacer
*********************.***

21. spacer 1.5|955694|25|NZ_CP041676|CRT matches to position: 957131-957155, mismatch: 2, identity: 0.92

ggtatcaatgagcgaaagcttaagt	CRISPR spacer
ggtatcgatgagcgaaagcttgagt	Protospacer
******.**************.***

22. spacer 1.7|955844|25|NZ_CP041676|CRT matches to position: 958679-958703, mismatch: 2, identity: 0.92

agtatcgatgagcgagagtatgagt	CRISPR spacer
agtatcgatgagcgaaagtttgagt	Protospacer
***************.*** *****

23. spacer 1.9|955995|25|NZ_CP041676|CRT matches to position: 958007-958031, mismatch: 2, identity: 0.92

cgtctcaatgagcgaaagcttgagt	CRISPR spacer
cgtctccatgagcgaaagcttaagt	Protospacer
****** **************.***

24. spacer 1.12|956205|25|NZ_CP041676|CRT matches to position: 957131-957155, mismatch: 2, identity: 0.92

ggtatcaatgagcgaaagcttaagt	CRISPR spacer
ggtatcgatgagcgaaagcttgagt	Protospacer
******.**************.***

25. spacer 1.14|956355|25|NZ_CP041676|CRT matches to position: 958679-958703, mismatch: 2, identity: 0.92

agtatcgatgagcgagagtatgagt	CRISPR spacer
agtatcgatgagcgaaagtttgagt	Protospacer
***************.*** *****

26. spacer 1.17|956535|25|NZ_CP041676|CRT matches to position: 958007-958031, mismatch: 2, identity: 0.92

cgtctcaatgagcgaaagcttgagt	CRISPR spacer
cgtctccatgagcgaaagcttaagt	Protospacer
****** **************.***

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP041676_1	1.15\|956415\|25\|NZ_CP041676\|CRT	956415-956439	25	NC_015178	Acidiphilium multivorum AIU301 plasmid pACMV1, complete sequence	235893-235917	4	0.84

1. spacer 1.15|956415|25|NZ_CP041676|CRT matches to NC_015178 (Acidiphilium multivorum AIU301 plasmid pACMV1, complete sequence) position: , mismatch: 4, identity: 0.84

cgtttcaatgagcgagagtatgagt	CRISPR spacer
cgtttcaaagagcgagagtaggacc	Protospacer
******** *********** ** .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

199065 : 259959

Pseudomonas_phage(12.5%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_113896925.1\|199065_200316_+\|tRNA	tyrosine--tRNA ligase	K4F5T3	Cronobacter_phage	6.0e-85	41.8
WP_013923981.1\|206271_206460_+	hypothetical protein	NA	NA	NA	NA
WP_041816975.1\|206449_206806_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_172616789.1\|206876_208421_+\|transposase	IS66 family transposase	S5VLC8	Leptospira_phage	8.6e-17	24.8
WP_113897315.1\|208504_209791_-\|transposase	ISL3 family transposase	NA	NA	NA	NA
WP_135951899.1\|210040_210964_+\|transposase	IS30 family transposase	H7BVY4	unidentified_phage	1.4e-30	31.4
WP_011953376.1\|211060_211777_+	NUDIX hydrolase	NA	NA	NA	NA
WP_135951896.1\|211879_213313_+	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	2.7e-97	42.4
WP_113897592.1\|213328_213874_+	cysteine hydrolase	A0A2K9L2K0	Tupanvirus	2.3e-09	27.9
WP_144227716.1\|214309_215308_+	ADP-ribosylglycohydrolase family protein	A0A172WZB4	Catopsilia_pomona_nucleopolyhedrovirus	6.8e-07	24.0
WP_065869100.1\|215327_216680_+	cytosine permease	NA	NA	NA	NA
WP_135951895.1\|216685_217573_+	ribokinase	NA	NA	NA	NA
WP_144226541.1\|217700_218015_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_020842970.1\|218720_220103_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	6.1e-30	27.0
WP_135951979.1\|220274_221597_+	MHS family MFS transporter	NA	NA	NA	NA
WP_144226543.1\|221753_222494_-	SDR family oxidoreductase	W8CYX9	Bacillus_phage	6.0e-08	38.2
WP_135951799.1\|222601_222829_+	hypothetical protein	NA	NA	NA	NA
WP_065533575.1\|222907_223558_+	NAD(P)H-binding protein	NA	NA	NA	NA
WP_003665459.1\|223618_223852_-	cytochrome b5	NA	NA	NA	NA
WP_135951797.1\|223995_225414_-	sodium:proton antiporter	NA	NA	NA	NA
WP_019252841.1\|225743_226769_-	cation transporter	NA	NA	NA	NA
WP_135951795.1\|227248_227791_-	serine hydrolase family protein	NA	NA	NA	NA
WP_003665465.1\|227802_228204_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA
WP_135951794.1\|228335_229106_+	triose-phosphate isomerase	NA	NA	NA	NA
WP_135951792.1\|229381_230335_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	7.9e-13	22.9
WP_135951790.1\|230334_230835_+	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_144226545.1\|230855_233705_+	DUF3427 domain-containing protein	A0A0A1ENT0	Lactobacillus_phage	1.6e-21	26.5
WP_135951786.1\|233766_234054_+	hypothetical protein	NA	NA	NA	NA
WP_144226547.1\|234019_235747_-\|transposase	IS1182 family transposase	A0ZS58	Staphylococcus_virus	2.7e-96	38.6
WP_135951784.1\|235894_237247_-	FAD-dependent oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	1.2e-126	52.5
WP_113896889.1\|237533_237854_+	hypothetical protein	NA	NA	NA	NA
WP_113896887.1\|238107_238812_+	hypothetical protein	NA	NA	NA	NA
WP_035155660.1\|238887_239622_+\|protease	matrixin family metalloprotease	NA	NA	NA	NA
WP_144226549.1\|239796_241605_-	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	8.7e-69	29.5
WP_144226551.1\|241708_242896_+	phosphopentomutase	NA	NA	NA	NA
WP_144226553.1\|245185_246568_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	3.6e-30	27.2
WP_135951762.1\|246827_247682_-	NAD(P)H-binding protein	NA	NA	NA	NA
WP_135951764.1\|247684_248140_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_135951766.1\|248288_249188_+	glycine/betaine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_135951768.1\|249252_249918_+	ABC transporter permease	NA	NA	NA	NA
WP_144226555.1\|249892_250663_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	1.2e-24	37.0
WP_135951772.1\|250655_251273_+	ABC transporter permease	NA	NA	NA	NA
WP_135951774.1\|251365_251794_+	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA
WP_172616790.1\|251869_253207_-	ClC family H(+)/Cl(-) exchange transporter	NA	NA	NA	NA
WP_086142143.1\|253552_254698_-	ArgE/DapE family deacylase	NA	NA	NA	NA
WP_003665503.1\|254717_255407_-	ABC transporter permease	NA	NA	NA	NA
WP_003665505.1\|255399_256464_-	methionine ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.9e-23	31.3
WP_144226559.1\|256476_257328_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_144226561.1\|257849_258782_+	NAD(P)-binding domain-containing protein	NA	NA	NA	NA
WP_144226439.1\|258990_259959_+\|transposase	IS30 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

296654 : 370828

Lactobacillus_phage(13.33%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_035167654.1\|296654_297053_+\|transposase	IS200/IS605 family transposase	A0A286QN76	Streptococcus_phage	3.9e-46	62.9
WP_144226567.1\|297052_298228_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A0P0ICY9	Lactobacillus_phage	8.6e-118	55.4
WP_113896835.1\|298454_298853_+	DUF1934 domain-containing protein	NA	NA	NA	NA
WP_172616792.1\|298898_299456_+	DNA-directed RNA polymerase subunit delta	NA	NA	NA	NA
WP_113896832.1\|299631_301236_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	2.2e-148	50.9
WP_135951666.1\|301504_302782_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_003665599.1\|302874_303120_+	type B 50S ribosomal protein L31	NA	NA	NA	NA
WP_135951664.1\|303278_304595_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA
WP_135951662.1\|304578_305469_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_094501105.1\|305518_306223_+	class A sortase	NA	NA	NA	NA
WP_094504712.1\|306634_307414_+	triose-phosphate isomerase	NA	NA	NA	NA
WP_135951670.1\|307425_308292_+	class II fructose-1,6-bisphosphate aldolase	NA	NA	NA	NA
WP_019252332.1\|308311_308968_+	histidine phosphatase family protein	NA	NA	NA	NA
WP_135951657.1\|309003_309468_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA
WP_019252334.1\|309597_310167_+	LemA family protein	NA	NA	NA	NA
WP_019252335.1\|310169_311066_+\|protease	zinc metalloprotease HtpX	NA	NA	NA	NA
WP_135951655.1\|311223_312603_+	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	NA	NA	NA	NA
WP_124216360.1\|312674_314168_+	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	3.4e-71	38.7
WP_172616789.1\|328198_329743_-\|transposase	IS66 family transposase	S5VLC8	Leptospira_phage	8.6e-17	24.8
WP_041816975.1\|329813_330170_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_013923981.1\|330159_330348_-	hypothetical protein	NA	NA	NA	NA
WP_135951993.1\|330563_331505_+	glutaminase	NA	NA	NA	NA
WP_144226571.1\|331991_333374_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	6.1e-30	27.2
WP_135951508.1\|333457_334747_-	D-alanyl-lipoteichoic acid biosynthesis protein DltD	NA	NA	NA	NA
WP_003665624.1\|334739_334979_-	D-alanine--poly(phosphoribitol) ligase subunit DltC	NA	NA	NA	NA
WP_144226573.1\|334998_336216_-	D-alanyl-lipoteichoic acid biosynthesis protein DltB	A0A125RNP0	Pseudomonas_phage	1.1e-22	29.7
WP_144226575.1\|336215_337742_-	D-alanine--poly(phosphoribitol) ligase subunit DltA	A0A2K9KZV5	Tupanvirus	1.8e-38	26.9
WP_003665629.1\|337763_337904_-	teichoic acid D-Ala incorporation-associated protein DltX	NA	NA	NA	NA
WP_019254272.1\|338234_338597_+	holo-ACP synthase	NA	NA	NA	NA
WP_135951503.1\|338596_339724_+	alanine racemase	A0A0P0YM39	Yellowstone_lake_mimivirus	1.9e-29	27.7
WP_144226577.1\|339742_340117_+	type II toxin-antitoxin system PemK/MazF family toxin	A0A291I9M9	Lactobacillus_phage	1.2e-09	36.0
WP_135951501.1\|340307_341684_+	cytosine permease	NA	NA	NA	NA
WP_135951499.1\|341674_342913_+	cytosine deaminase	NA	NA	NA	NA
WP_113896808.1\|343298_344090_+	2-keto-4-pentenoate hydratase	NA	NA	NA	NA
WP_065867192.1\|344198_344837_-	CBS domain-containing protein	NA	NA	NA	NA
WP_135951497.1\|345042_345603_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_144226579.1\|345621_349161_+	transcription-repair coupling factor	NA	NA	NA	NA
WP_003665648.1\|349157_349430_+	RNA-binding S4 domain-containing protein	NA	NA	NA	NA
WP_020842863.1\|349530_349887_+	septum formation initiator family protein	NA	NA	NA	NA
WP_003665652.1\|350075_350570_+	RNA-binding protein S1	NA	NA	NA	NA
WP_135951510.1\|350571_351966_+\|tRNA	tRNA lysidine(34) synthetase TilS	A0A0N7G7K4	Chrysochromulina_ericina_virus	2.8e-14	27.1
WP_003665656.1\|351958_352501_+	hypoxanthine phosphoribosyltransferase	A0A218MMB5	uncultured_virus	1.6e-10	28.6
WP_003665658.1\|352732_354841_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	H8ZJI5	Ostreococcus_tauri_virus	4.6e-106	48.4
WP_135951493.1\|354931_355852_+	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA
WP_019254283.1\|355959_356961_+\|tRNA	tRNA dihydrouridine synthase DusB	NA	NA	NA	NA
WP_019254284.1\|356981_358508_+\|tRNA	lysine--tRNA ligase	A0A2K9KZX5	Tupanvirus	4.4e-90	41.9
WP_135951491.1\|358708_360121_-	aryl-sulfate sulfotransferase	NA	NA	NA	NA
WP_016496780.1\|366398_366587_+	hypothetical protein	NA	NA	NA	NA
WP_066036014.1\|366576_366933_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_135951975.1\|366999_368529_+\|transposase	IS66 family transposase	NA	NA	NA	NA
WP_013923981.1\|368678_368867_+	hypothetical protein	NA	NA	NA	NA
WP_003668340.1\|368856_369213_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_172616793.1\|369283_370828_+\|transposase	IS66 family transposase	S5VLC8	Leptospira_phage	8.6e-17	24.8

DBSCAN-SWA_3

708495 : 719501

Lactobacillus_phage(84.62%)

integrase

attL 700752:700766|attR 716796:716810

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
700752:700766	attL	NA	NA	NA	NA
WP_144226669.1\|708495_709626_-\|integrase	tyrosine-type recombinase/integrase	E9LUK6	Lactobacillus_phage	2.3e-107	55.9
WP_144226671.1\|709785_710271_-	Ltp family lipoprotein	A0A0A1ERB0	Lactobacillus_phage	5.8e-20	83.0
WP_144226673.1\|710333_710603_-	hypothetical protein	NA	NA	NA	NA
WP_144226675.1\|710608_711067_-	toxin	NA	NA	NA	NA
WP_172616795.1\|711072_711369_-	helix-turn-helix domain-containing protein	A0A1S5S8S8	Streptococcus_phage	2.5e-10	40.2
WP_144226679.1\|711576_711786_+	helix-turn-helix transcriptional regulator	A0A1S5S8R4	Streptococcus_phage	5.9e-06	41.2
WP_144226681.1\|711829_712156_+	hypothetical protein	E9LUL9	Lactobacillus_phage	7.3e-11	39.2
WP_144226683.1\|712311_712518_+	DNA-binding protein	NA	NA	NA	NA
WP_172616796.1\|712514_712682_+	hypothetical protein	NA	NA	NA	NA
WP_144226685.1\|712704_712947_+	hypothetical protein	NA	NA	NA	NA
WP_172616797.1\|712912_713062_+	hypothetical protein	NA	NA	NA	NA
WP_144226687.1\|713086_713359_+	hypothetical protein	NA	NA	NA	NA
WP_144226689.1\|713358_713838_+	siphovirus Gp157 family protein	A0A0A1EL06	Lactobacillus_phage	2.4e-42	54.1
WP_144226691.1\|713837_715205_+	DEAD/DEAH box helicase family protein	A0A0A1ENT0	Lactobacillus_phage	1.0e-210	78.3
WP_144226693.1\|715218_715983_+	AAA family ATPase	A0A0A1ENB5	Lactobacillus_phage	8.3e-130	89.0
WP_144226695.1\|715989_716505_+	DUF669 domain-containing protein	A0A0A1ELK1	Lactobacillus_phage	1.6e-76	80.7
WP_144226697.1\|716663_717455_+	bifunctional DNA primase/polymerase	A0A0A1ERC1	Lactobacillus_phage	5.2e-127	85.7
716796:716810	attR	NA	NA	NA	NA
WP_172616798.1\|717429_718671_+	helicase	A0A0A1EL11	Lactobacillus_phage	6.6e-169	69.8
WP_144226699.1\|718942_719152_+	helix-turn-helix domain-containing protein	Q20DG0	Lactobacillus_phage	1.5e-09	46.9
WP_144226701.1\|719141_719501_+	VRR-NUC domain-containing protein	A0A0A1ENT6	Lactobacillus_phage	4.7e-51	84.7

DBSCAN-SWA_4

979951 : 1099360

117

Lactobacillus_phage(45.95%)

transposase,tail,integrase,capsid,terminase,protease,head,portal

attL 1052497:1052512|attR 1099373:1099387

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_135951975.1\|979951_981481_-\|transposase	IS66 family transposase	NA	NA	NA	NA
WP_066036014.1\|981547_981904_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_016496780.1\|981893_982082_-	hypothetical protein	NA	NA	NA	NA
WP_003664144.1\|982839_984180_-\|transposase	IS4-like element ISLre1 family transposase	NA	NA	NA	NA
WP_135951705.1\|984354_985146_+	DUF3800 domain-containing protein	NA	NA	NA	NA
WP_144226869.1\|985455_987306_+	hypothetical protein	NA	NA	NA	NA
WP_135951709.1\|987371_990860_+	DEAD/DEAH box helicase	A0A0P0YMN2	Yellowstone_lake_phycodnavirus	5.6e-40	28.2
WP_144227745.1\|990956_991733_+	tyrosine protein phosphatase	NA	NA	NA	NA
WP_135951713.1\|991884_992787_+	glycoside hydrolase family 25	A0A0A1ERA5	Lactobacillus_phage	1.2e-100	55.9
WP_135951715.1\|992908_994027_+	exonuclease SbcCD subunit D	A0A143FIT9	Bacillus_phage	4.2e-05	26.1
WP_135951717.1\|994028_997130_+	SMC family ATPase	NA	NA	NA	NA
WP_135951719.1\|997655_998333_-	hypothetical protein	NA	NA	NA	NA
WP_135951721.1\|998534_1000796_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA
WP_135951723.1\|1000905_1001328_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_135951724.1\|1001320_1001881_+	Fic family protein	S4TP71	Salmonella_phage	7.7e-08	28.8
WP_135951725.1\|1001877_1002582_-	glucosamine-6-phosphate deaminase	NA	NA	NA	NA
WP_035151392.1\|1002745_1003582_+	histidine phosphatase family protein	NA	NA	NA	NA
WP_135951727.1\|1004531_1005023_+	hypothetical protein	NA	NA	NA	NA
WP_035153683.1\|1010530_1010734_+	hypothetical protein	NA	NA	NA	NA
WP_135951943.1\|1010806_1011448_-	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_020843114.1\|1011590_1013897_+	DUF4968 domain-containing protein	NA	NA	NA	NA
WP_019253216.1\|1014055_1015309_+	chloride channel protein	NA	NA	NA	NA
WP_019253217.1\|1015372_1016020_-	thiamine phosphate synthase	NA	NA	NA	NA
WP_135951941.1\|1016016_1016835_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA
WP_065867939.1\|1016827_1017637_-	hydroxyethylthiazole kinase	NA	NA	NA	NA
WP_019253220.1\|1017917_1018223_+	hypothetical protein	NA	NA	NA	NA
WP_019253221.1\|1018223_1020125_+	hypothetical protein	NA	NA	NA	NA
WP_016496780.1\|1020334_1020523_+	hypothetical protein	NA	NA	NA	NA
WP_066036014.1\|1020512_1020869_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_135951975.1\|1020935_1022465_+\|transposase	IS66 family transposase	NA	NA	NA	NA
WP_065532979.1\|1022602_1023268_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_135951581.1\|1024120_1024558_-	hypothetical protein	NA	NA	NA	NA
WP_135951583.1\|1024573_1025533_-	hypothetical protein	NA	NA	NA	NA
WP_168341795.1\|1025667_1026687_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_144226872.1\|1026745_1027522_-	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	4.8e-16	29.7
WP_172616786.1\|1027907_1028069_-	hypothetical protein	NA	NA	NA	NA
WP_144226875.1\|1028058_1028631_-	NTP transferase domain-containing protein	NA	NA	NA	NA
WP_019253238.1\|1028627_1029119_-	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA
WP_019253239.1\|1029097_1030315_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA
WP_020843110.1\|1030304_1030802_-	MogA/MoaB family molybdenum cofactor biosynthesis protein	NA	NA	NA	NA
WP_020843109.1\|1030798_1031815_-	HesA/MoeB/ThiF family protein	NA	NA	NA	NA
WP_144226878.1\|1031959_1035625_+	nitrate reductase subunit alpha	NA	NA	NA	NA
WP_019253243.1\|1035614_1037174_+	nitrate reductase subunit beta	A0A077SL61	Escherichia_phage	9.3e-19	42.2
WP_019253244.1\|1037166_1037745_+	nitrate reductase molybdenum cofactor assembly chaperone	NA	NA	NA	NA
WP_003667738.1\|1037737_1038427_+	respiratory nitrate reductase subunit gamma	NA	NA	NA	NA
WP_144226881.1\|1038497_1039388_-	EamA family transporter	NA	NA	NA	NA
WP_003663651.1\|1039496_1040144_-\|integrase	site-specific integrase	D2XR58	Bacillus_phage	2.5e-18	30.7
WP_035156370.1\|1040160_1041015_-	patatin family protein	NA	NA	NA	NA
WP_003674018.1\|1041454_1041613_-	hypothetical protein	NA	NA	NA	NA
WP_135951885.1\|1041684_1042764_-	tyrosine recombinase XerS	A0A0E3XA96	Gordonia_phage	2.4e-05	29.6
WP_065867518.1\|1042992_1043412_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_135951883.1\|1043420_1044791_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
WP_172616804.1\|1044787_1045645_+	acetyl-CoA carboxylase carboxyl transferase subunit beta	NA	NA	NA	NA
WP_019252802.1\|1045637_1046414_+	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA
WP_019252801.1\|1046424_1047189_+	enoyl-ACP reductase FabI	NA	NA	NA	NA
WP_019252800.1\|1048367_1048721_-	hypothetical protein	NA	NA	NA	NA
WP_135951970.1\|1048853_1049501_-	DsbA family oxidoreductase	NA	NA	NA	NA
WP_144226439.1\|1049797_1050766_+\|transposase	IS30 family transposase	NA	NA	NA	NA
WP_172616838.1\|1050898_1051759_+	alpha/beta hydrolase	A0A088FQA2	Mycobacterium_phage	3.8e-14	28.4
1052497:1052512	attL	NA	NA	NA	NA
WP_144226891.1\|1053409_1053733_+\|integrase	tyrosine-type recombinase/integrase	E9LUK6	Lactobacillus_phage	9.4e-35	69.2
1052497:1052512	attL	NA	NA	NA	NA
WP_003664144.1\|1053993_1055334_+\|transposase	IS4-like element ISLre1 family transposase	NA	NA	NA	NA
WP_144226894.1\|1055961_1057398_-	gametolysin	NA	NA	NA	NA
1055499:1055514	attR	NA	NA	NA	NA
WP_122481186.1\|1057390_1057828_-	hypothetical protein	A0A0A1ELI5	Lactobacillus_phage	6.2e-21	53.2
1055499:1055514	attR	NA	NA	NA	NA
WP_122481187.1\|1057814_1058084_-	hypothetical protein	NA	NA	NA	NA
WP_094502275.1\|1058097_1058580_-	hypothetical protein	NA	NA	NA	NA
WP_016497231.1\|1058593_1058779_-	hypothetical protein	NA	NA	NA	NA
WP_122481188.1\|1058790_1059258_-	alpha-amylase	NA	NA	NA	NA
WP_144226897.1\|1059271_1059523_-	hypothetical protein	NA	NA	NA	NA
WP_172616805.1\|1059536_1059704_-	hypothetical protein	NA	NA	NA	NA
WP_144226900.1\|1059735_1063395_-	hypothetical protein	Q6SE68	Lactobacillus_prophage	3.7e-42	33.7
WP_144226903.1\|1063396_1066063_-\|tail	phage tail protein	E9LUJ4	Lactobacillus_phage	6.0e-34	36.5
WP_094511513.1\|1066075_1066951_-\|tail	phage tail family protein	A0A0M7RF73	Lactobacillus_phage	1.0e-35	32.5
WP_144226906.1\|1066966_1071523_-	tape measure protein	E9LUR1	Lactobacillus_phage	9.5e-72	35.5
WP_144226909.1\|1071754_1072111_-	hypothetical protein	NA	NA	NA	NA
WP_144226913.1\|1072231_1072843_-	hypothetical protein	A0A286QPI7	Streptococcus_phage	6.8e-18	28.9
WP_144226916.1\|1072860_1073232_-	DUF806 family protein	NA	NA	NA	NA
WP_122481196.1\|1073231_1073660_-	hypothetical protein	A0A286QP01	Streptococcus_phage	2.7e-37	57.4
WP_122481197.1\|1073643_1074021_-\|head	phage head closure protein	Q6J1Y0	Lactobacillus_phage	5.0e-11	36.3
WP_144226919.1\|1074007_1074361_-\|head,tail	phage head-tail connector protein	F8HGT2	Streptococcus_phage	1.3e-16	46.9
WP_094511526.1\|1074380_1075583_-\|capsid	phage major capsid protein	E9LUQ3	Lactobacillus_phage	3.8e-105	51.0
WP_094511527.1\|1075572_1076325_-\|protease	Clp protease ClpP	E9LUQ2	Lactobacillus_phage	5.8e-67	56.4
WP_172616806.1\|1076293_1077493_-\|portal	phage portal protein	E9LUQ1	Lactobacillus_phage	3.7e-132	59.5
WP_094511530.1\|1077503_1077683_-	DUF1056 family protein	NA	NA	NA	NA
WP_094511532.1\|1077672_1079544_-\|terminase	terminase large subunit	E9LUP9	Lactobacillus_phage	1.4e-250	65.9
WP_094511533.1\|1079540_1079996_-\|terminase	phage terminase small subunit P27 family	A0A286QT46	Streptococcus_phage	1.8e-47	63.8
WP_144226925.1\|1080120_1080657_-	HNH endonuclease	E9LUP7	Lactobacillus_phage	1.5e-45	54.3
WP_144226928.1\|1080905_1081886_-	N-6 DNA methylase	NA	NA	NA	NA
WP_144226931.1\|1081869_1082385_-	N-6 DNA methylase	A0A1S5S8X3	Streptococcus_phage	6.4e-17	35.7
WP_003663929.1\|1082444_1082615_-	hypothetical protein	U3PIS2	Lactobacillus_phage	2.2e-06	50.9
WP_163621915.1\|1082975_1083122_-	hypothetical protein	NA	NA	NA	NA
WP_144226934.1\|1084430_1084853_-	transcriptional regulator	NA	NA	NA	NA
WP_144226936.1\|1084949_1085147_-	hypothetical protein	NA	NA	NA	NA
WP_144226940.1\|1085404_1085599_-	hypothetical protein	NA	NA	NA	NA
WP_144227751.1\|1085670_1086138_-	methyltransferase domain-containing protein	A0A059T693	Listeria_phage	1.2e-46	51.6
WP_172616807.1\|1086124_1086298_-	hypothetical protein	NA	NA	NA	NA
WP_144226943.1\|1086287_1086800_-	hypothetical protein	NA	NA	NA	NA
WP_144226946.1\|1086882_1087065_-	hypothetical protein	NA	NA	NA	NA
WP_144226949.1\|1087064_1087811_-	hypothetical protein	A0A1L2JZ42	Aeribacillus_phage	1.0e-36	44.6
WP_144226952.1\|1087814_1088192_-	hypothetical protein	NA	NA	NA	NA
WP_144226955.1\|1088195_1088621_-	replication terminator protein	M1I9V9	Streptococcus_phage	6.8e-25	48.6
WP_144226958.1\|1088613_1088961_-	hypothetical protein	NA	NA	NA	NA
WP_144226962.1\|1088965_1089874_-	DnaD domain protein	E9LUM6	Lactobacillus_phage	7.5e-37	42.4
WP_094536731.1\|1089920_1090100_-	hypothetical protein	NA	NA	NA	NA
WP_094536729.1\|1090140_1090323_-	hypothetical protein	NA	NA	NA	NA
WP_144226965.1\|1090476_1090788_-	hypothetical protein	E9LUL9	Lactobacillus_phage	1.2e-07	36.1
WP_144226968.1\|1090954_1091326_+	hypothetical protein	NA	NA	NA	NA
WP_172616808.1\|1091503_1091662_-	hypothetical protein	NA	NA	NA	NA
WP_094536721.1\|1091752_1091944_+	hypothetical protein	NA	NA	NA	NA
WP_086141463.1\|1092079_1092295_-	helix-turn-helix transcriptional regulator	W6LP64	Streptococcus_phage	1.0e-08	42.4
WP_144226971.1\|1092452_1093109_+	helix-turn-helix domain-containing protein	U3PIS7	Lactobacillus_phage	3.5e-44	47.1
WP_144226975.1\|1093164_1093587_+	hypothetical protein	NA	NA	NA	NA
WP_144226978.1\|1093598_1094135_+	hypothetical protein	NA	NA	NA	NA
WP_144226981.1\|1094214_1095219_+	hypothetical protein	NA	NA	NA	NA
WP_172616809.1\|1095193_1095367_-	hypothetical protein	NA	NA	NA	NA
WP_003664118.1\|1095620_1096079_-\|transposase	IS200/IS605 family transposase	A0A1P8BMC0	Lactococcus_phage	3.9e-18	37.0
WP_144226585.1\|1096768_1098151_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	6.1e-30	27.0
WP_144226984.1\|1098265_1099360_+\|integrase	tyrosine-type recombinase/integrase	E9LUK6	Lactobacillus_phage	5.0e-128	63.2
1099373:1099387	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1259059 : 1267123

Staphylococcus_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_019251613.1\|1259059_1259902_-	DegV family protein	A0A0N9SI50	Staphylococcus_phage	8.0e-17	34.1
WP_003666062.1\|1260080_1260725_+	hemolysin III family protein	NA	NA	NA	NA
WP_003666061.1\|1260713_1261202_-	dihydrofolate reductase	A0A1B2IBQ4	Erwinia_phage	4.3e-23	40.8
WP_019254036.1\|1261217_1262180_-	thymidylate synthase	A0A0N9SH48	Staphylococcus_phage	1.6e-114	60.9
WP_019254037.1\|1262198_1264109_-	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	1.8e-56	30.4
WP_109883327.1\|1264110_1265322_-\|tRNA	CCA tRNA nucleotidyltransferase	G3MAR3	Bacillus_virus	3.8e-36	39.7
WP_113896511.1\|1265447_1266713_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_003666054.1\|1266847_1267123_-	HU family DNA-binding protein	A0A0H3UZA0	Geobacillus_virus	2.6e-25	68.5

DBSCAN-SWA_6

1426674 : 1434708

Lactobacillus_phage(33.33%)

integrase

attL 1425039:1425052|attR 1431316:1431329

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1425039:1425052	attL	NA	NA	NA	NA
WP_065867614.1\|1426674_1427016_-	DUF771 domain-containing protein	E9LUT3	Lactobacillus_phage	5.0e-10	35.8
WP_081306711.1\|1426993_1427302_-	DUF739 family protein	A0A2I6PDH8	Staphylococcus_phage	6.7e-06	41.6
WP_065867615.1\|1427457_1427889_+	helix-turn-helix domain-containing protein	A0A2I6PDG6	Staphylococcus_phage	5.9e-16	50.0
WP_065867616.1\|1427890_1428358_+	hypothetical protein	NA	NA	NA	NA
WP_065867617.1\|1428414_1429542_+\|integrase	site-specific integrase	A0A0M9JJ77	Lactobacillus_phage	6.8e-96	50.3
WP_144227230.1\|1429637_1430042_+	hypothetical protein	NA	NA	NA	NA
WP_065867619.1\|1431120_1431735_-	DUF308 domain-containing protein	NA	NA	NA	NA
1431316:1431329	attR	NA	NA	NA	NA
WP_003671181.1\|1431845_1432364_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	2.3e-30	45.1
WP_144227233.1\|1432380_1434708_-	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	8.0e-75	31.2

DBSCAN-SWA_7

1519227 : 1604920

Lactobacillus_prophage(46.15%)

transposase,tail,tRNA,capsid,holin,terminase,protease,head,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_144227267.1\|1519227_1519737_-\|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	NA	NA	NA	NA
WP_135951461.1\|1519908_1520766_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_019254289.1\|1520880_1521909_+	lactonase family protein	NA	NA	NA	NA
WP_172616817.1\|1523062_1524607_-\|transposase	IS66 family transposase	S5VLC8	Leptospira_phage	8.6e-17	24.8
WP_003668340.1\|1524677_1525034_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_013923981.1\|1525023_1525212_-	hypothetical protein	NA	NA	NA	NA
WP_065867204.1\|1530999_1531905_-	RluA family pseudouridine synthase	NA	NA	NA	NA
WP_065532763.1\|1531904_1532717_-	NAD kinase	NA	NA	NA	NA
WP_019251188.1\|1532720_1533374_-	GTP pyrophosphokinase family protein	NA	NA	NA	NA
WP_135951893.1\|1533538_1534177_+	DsbA family protein	NA	NA	NA	NA
WP_065867205.1\|1534247_1535624_-	C69 family dipeptidase	NA	NA	NA	NA
WP_065869152.1\|1535625_1536660_-	competence protein CoiA	NA	NA	NA	NA
WP_003666878.1\|1536743_1537415_-	adaptor protein MecA	NA	NA	NA	NA
WP_003666877.1\|1537540_1537942_-	transcriptional regulator Spx	NA	NA	NA	NA
WP_003666876.1\|1538189_1538681_+	hypothetical protein	NA	NA	NA	NA
WP_013923981.1\|1540259_1540448_+	hypothetical protein	NA	NA	NA	NA
WP_003668340.1\|1540437_1540794_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_172616817.1\|1540864_1542409_+\|transposase	IS66 family transposase	S5VLC8	Leptospira_phage	8.6e-17	24.8
WP_135951975.1\|1542663_1544193_-\|transposase	IS66 family transposase	NA	NA	NA	NA
WP_066036014.1\|1544259_1544616_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_016496780.1\|1544605_1544794_-	hypothetical protein	NA	NA	NA	NA
WP_016496977.1\|1552440_1553088_+	VTT domain-containing protein	NA	NA	NA	NA
WP_019252885.1\|1553055_1553709_-	TIGR01906 family membrane protein	NA	NA	NA	NA
WP_135951050.1\|1553692_1554463_-	TIGR01457 family HAD-type hydrolase	NA	NA	NA	NA
WP_003671878.1\|1554471_1555008_-	YutD family protein	NA	NA	NA	NA
WP_003671879.1\|1555027_1555636_-	metallophosphoesterase	A0A076G7D9	Bacillus_phage	1.3e-29	38.5
WP_035167966.1\|1555750_1556947_-	acetate kinase	NA	NA	NA	NA
WP_019252888.1\|1556960_1557794_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_065867388.1\|1558208_1558640_-	ComGF family competence protein	NA	NA	NA	NA
WP_019252890.1\|1558636_1558927_-	hypothetical protein	NA	NA	NA	NA
WP_065867389.1\|1558913_1559348_-	hypothetical protein	NA	NA	NA	NA
WP_132140242.1\|1559344_1559611_-	competence protein ComGC	NA	NA	NA	NA
WP_172616818.1\|1559746_1559914_-	hypothetical protein	NA	NA	NA	NA
WP_144227272.1\|1560572_1561499_-	glycoside hydrolase family 25	A0A0A1ERA5	Lactobacillus_phage	5.5e-128	67.5
WP_144227275.1\|1561511_1561961_-	hypothetical protein	A0A0A1ELI5	Lactobacillus_phage	4.2e-17	41.6
WP_144227279.1\|1561944_1562364_-\|holin	phage holin family protein	A0A097BY69	Enterococcus_phage	8.8e-17	39.5
WP_144227282.1\|1562391_1562901_-	hypothetical protein	NA	NA	NA	NA
WP_144227285.1\|1563054_1563315_-	hypothetical protein	A0A0P0I3K6	Lactobacillus_phage	2.9e-10	45.2
WP_144227288.1\|1563317_1563503_-	hypothetical protein	NA	NA	NA	NA
WP_144227291.1\|1569029_1569386_-	hypothetical protein	Q6SE69	Lactobacillus_prophage	1.8e-58	94.1
WP_144227294.1\|1569402_1575579_-	lytic transglycosylase	Q6SE70	Lactobacillus_prophage	0.0e+00	78.7
WP_144227297.1\|1575578_1575872_-	hypothetical protein	Q6SE71	Lactobacillus_prophage	1.1e-37	81.4
WP_144227300.1\|1575964_1576375_-	hypothetical protein	Q6SE72	Lactobacillus_prophage	2.8e-60	90.5
WP_144227303.1\|1576456_1576975_-\|tail	phage tail protein	Q6SE73	Lactobacillus_prophage	5.3e-72	87.7
WP_144227306.1\|1576979_1577348_-	hypothetical protein	Q6SE74	Lactobacillus_prophage	3.9e-53	85.2
WP_144227309.1\|1577349_1577898_-	HK97 gp10 family phage protein	Q6SE75	Lactobacillus_prophage	2.4e-78	76.8
WP_144227312.1\|1577890_1578244_-	hypothetical protein	Q6SE76	Lactobacillus_prophage	1.3e-53	83.8
WP_144227766.1\|1578240_1578531_-\|head,tail	phage head-tail connector protein	Q6SE77	Lactobacillus_prophage	1.9e-34	77.1
WP_144227315.1\|1578568_1579618_-\|capsid	major capsid protein	Q6SE78	Lactobacillus_prophage	1.2e-174	87.1
WP_144227318.1\|1579632_1580007_-	hypothetical protein	Q6SE79	Lactobacillus_prophage	1.8e-53	92.6
WP_144227321.1\|1580025_1580685_-	DUF4355 domain-containing protein	Q6SE80	Lactobacillus_prophage	2.5e-66	66.4
WP_144227324.1\|1580832_1581891_-\|capsid	minor capsid protein	Q6SE81	Lactobacillus_prophage	2.5e-148	75.9
WP_144227327.1\|1581901_1582189_-\|protease	ribosomal-processing cysteine protease Prp	Q6SE82	Lactobacillus_prophage	4.8e-30	71.7
WP_144227330.1\|1582124_1583618_-\|portal	phage portal protein	Q6SE83	Lactobacillus_prophage	5.2e-237	81.7
WP_144227333.1\|1583633_1584908_-\|terminase	PBSX family phage terminase large subunit	Q6SE84	Lactobacillus_prophage	6.9e-222	84.7
WP_144227336.1\|1584894_1585752_-\|terminase	terminase small subunit	Q6SE85	Lactobacillus_prophage	3.1e-109	75.4
WP_016497199.1\|1585863_1586040_+	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_144227339.1\|1586098_1586485_+	type II toxin-antitoxin system HicB family antitoxin	A0A0C5AN56	Paenibacillus_phage	8.7e-11	32.3
WP_144227342.1\|1586534_1586849_-	hypothetical protein	NA	NA	NA	NA
WP_144227345.1\|1586971_1588249_-	N-6 DNA methylase	A0A1X9I6H1	Streptococcus_phage	1.8e-84	41.8
WP_144227348.1\|1588376_1588964_-	N-6 DNA methylase	A0A2D1GPI7	Lactobacillus_phage	5.4e-12	32.4
WP_144227351.1\|1589029_1589773_-	site-specific DNA-methyltransferase	A0A2P0ZL38	Lactobacillus_phage	2.8e-74	61.2
WP_172616819.1\|1589895_1590066_-	hypothetical protein	NA	NA	NA	NA
WP_144227354.1\|1590835_1591336_-	hypothetical protein	NA	NA	NA	NA
WP_172616820.1\|1591455_1591602_-	hypothetical protein	NA	NA	NA	NA
WP_144227357.1\|1592033_1592525_-	DUF1064 domain-containing protein	K4I216	Lactobacillus_phage	3.9e-24	48.2
WP_144227360.1\|1592726_1592984_-	hypothetical protein	A0A0A1EL18	Lactobacillus_phage	1.5e-14	50.6
WP_144227363.1\|1592983_1593253_-	hypothetical protein	A0A1S5RCN3	Lactobacillus_phage	3.7e-16	50.6
WP_144227366.1\|1593259_1593484_-	hypothetical protein	NA	NA	NA	NA
WP_144227369.1\|1593483_1593762_-	hypothetical protein	NA	NA	NA	NA
WP_172616821.1\|1593776_1593920_-	hypothetical protein	NA	NA	NA	NA
WP_144227372.1\|1593916_1594111_-	hypothetical protein	NA	NA	NA	NA
WP_144227375.1\|1594107_1594629_-	hypothetical protein	NA	NA	NA	NA
WP_172616822.1\|1594618_1594786_-	hypothetical protein	NA	NA	NA	NA
WP_144227378.1\|1594787_1595627_-	ATP-binding protein	E9LUN6	Lactobacillus_phage	2.7e-33	35.9
WP_144227381.1\|1596543_1597269_-	hypothetical protein	E9LUU3	Lactobacillus_phage	9.8e-48	39.9
WP_144227384.1\|1597281_1597863_-	DUF669 domain-containing protein	NA	NA	NA	NA
WP_144227387.1\|1597865_1598549_-	AAA family ATPase	E9LUU1	Lactobacillus_phage	2.8e-76	64.0
WP_144227390.1\|1598559_1599093_-	host-nuclease inhibitor Gam family protein	NA	NA	NA	NA
WP_144227393.1\|1599301_1599487_-	hypothetical protein	NA	NA	NA	NA
WP_094532597.1\|1599494_1599686_-	helix-turn-helix transcriptional regulator	Q6SE98	Lactobacillus_prophage	2.7e-05	41.9
WP_144227396.1\|1599809_1599992_+	DUF1508 domain-containing protein	NA	NA	NA	NA
WP_172616823.1\|1600363_1600525_-	hypothetical protein	NA	NA	NA	NA
WP_144227399.1\|1600535_1601276_-	Rha family transcriptional regulator	D2KRD8	Lactobacillus_phage	1.8e-68	53.7
WP_144227402.1\|1601352_1601559_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_086141198.1\|1601741_1602164_+	helix-turn-helix transcriptional regulator	A0A2P1JU09	Anoxybacillus_phage	4.7e-26	45.1
WP_085678722.1\|1602184_1602637_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_144227405.1\|1602698_1603280_+	hypothetical protein	NA	NA	NA	NA
WP_144227768.1\|1603715_1603913_+	hypothetical protein	E9LUL0	Lactobacillus_phage	2.3e-15	60.3
WP_144227408.1\|1603945_1604920_+	DUF3644 domain-containing protein	A0A0N9RUA4	Staphylococcus_phage	8.2e-74	45.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP041677

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP041676

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection