CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP037899	Methylacidiphilum kamchatkense Kam1 chromosome, complete genome	1 crisprs	cas14k,Cas9_archaeal,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,cmr1gr7,csx1,cas1,cas2,cas3,csa3,DinG	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP037899_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP037899_1

1297585-1298921

TypeIII

Consensus_repeat	Method
GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAC	PILER-CR
GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAC	CRISPRCasFinder
GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAC	CRT

17 spacers

cas2,cas1,csx1,cmr1gr7,cmr6gr7,cas3

The CRISPR arrays of NZ_CP037899_1

>merge|NZ_CP037899|1|1297585-1298921|PILER-CR,CRISPRCasFinder,CRT
GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGACATTTTTCACAGAAATATTTACCGAAGCAATTTTCCTTAGTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGACCACTAATTTGGAAGTGACAAATAGATAATCTTGCCCAAGTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGACATAGTGATAGCGCTTAAGTGATTAGCAATAGCCTGCATGGTGTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGACAATATCTTCAACAAGACCAGCTTGATCAGGTGTTTCTATCGTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGACGATATTCCAGTAACCTTGCTAAATCATGCTCTTTCTCTGGGTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGACCCCTGTCCCAAATTTTTCGATTGTTCTTATAATTTCTCCAAGTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGACCATCTAATCGTTCAGCTTCATTACTTTTCCCAAACCCTGTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGACAGTTATCTTCATAAAACCTCCAAGGTTTAGGGTTTTTCTTGTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGACCTTGAATCGGGATATAGACCCAATTAATCGGGGGCAAGTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGACGATATTCCAGTAACCTTGCTAAATCATGCTCTTTCTCTGGGTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGACCCCTGTCCCAAATTTTTCGATTGTTCTTATAATTTCTCCAAGTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGACCATCTAATCGTTCAGCTTCATTACTTTTCCCAAACCCTGTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAAAACAGAAACTTTTTCCTCCATTAAATTACACAACACGAGTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGACCTTCTGATGACTTCCTCTGGATTTTTTCCAGTAACATTCCAGTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGACGAAGGGAAAGGAATTCGCTTAGATAACACAGTGGAAATTGTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGACATCCATCTACAATTAATTGCATTGTTTACGCTTATTTTCAGTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGACCTTCCATCAATAGCAAGACTAACGATTGCATCCTTTAGTGGGTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAC

>NZ_CP037899|1|1|1297585-1298921|PILER-CR
GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAC	ATTTTTCACAGAAATATTTACCGAAGCAATTTTCCTTA
GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAC	CACTAATTTGGAAGTGACAAATAGATAATCTTGCCCAA
GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAC	ATAGTGATAGCGCTTAAGTGATTAGCAATAGCCTGCATGGT
GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAC	AATATCTTCAACAAGACCAGCTTGATCAGGTGTTTCTATC
GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAC	GATATTCCAGTAACCTTGCTAAATCATGCTCTTTCTCTGG
GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAC	CCCTGTCCCAAATTTTTCGATTGTTCTTATAATTTCTCCAA
GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAC	CATCTAATCGTTCAGCTTCATTACTTTTCCCAAACCCT
GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAC	AGTTATCTTCATAAAACCTCCAAGGTTTAGGGTTTTTCTT
GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAC	CTTGAATCGGGATATAGACCCAATTAATCGGGGGCAA
GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAC	GATATTCCAGTAACCTTGCTAAATCATGCTCTTTCTCTGG
GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAC	CCCTGTCCCAAATTTTTCGATTGTTCTTATAATTTCTCCAA
GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAC	CATCTAATCGTTCAGCTTCATTACTTTTCCCAAACCCT
GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAA	AACAGAAACTTTTTCCTCCATTAAATTACACAACACGA
GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAC	CTTCTGATGACTTCCTCTGGATTTTTTCCAGTAACATTCCA
GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAC	GAAGGGAAAGGAATTCGCTTAGATAACACAGTGGAAATT
GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAC	ATCCATCTACAATTAATTGCATTGTTTACGCTTATTTTCA
GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAC	CTTCCATCAATAGCAAGACTAACGATTGCATCCTTTAGTGG
GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAC

>NZ_CP037899|1|1|1297585-1298921|CRISPRCasFinder
GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAC	ATTTTTCACAGAAATATTTACCGAAGCAATTTTCCTTA
GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAC	CACTAATTTGGAAGTGACAAATAGATAATCTTGCCCAA
GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAC	ATAGTGATAGCGCTTAAGTGATTAGCAATAGCCTGCATGGT
GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAC	AATATCTTCAACAAGACCAGCTTGATCAGGTGTTTCTATC
GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAC	GATATTCCAGTAACCTTGCTAAATCATGCTCTTTCTCTGG
GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAC	CCCTGTCCCAAATTTTTCGATTGTTCTTATAATTTCTCCAA
GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAC	CATCTAATCGTTCAGCTTCATTACTTTTCCCAAACCCT
GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAC	AGTTATCTTCATAAAACCTCCAAGGTTTAGGGTTTTTCTT
GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAC	CTTGAATCGGGATATAGACCCAATTAATCGGGGGCAA
GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAC	GATATTCCAGTAACCTTGCTAAATCATGCTCTTTCTCTGG
GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAC	CCCTGTCCCAAATTTTTCGATTGTTCTTATAATTTCTCCAA
GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAC	CATCTAATCGTTCAGCTTCATTACTTTTCCCAAACCCT
GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAA	AACAGAAACTTTTTCCTCCATTAAATTACACAACACGA
GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAC	CTTCTGATGACTTCCTCTGGATTTTTTCCAGTAACATTCCA
GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAC	GAAGGGAAAGGAATTCGCTTAGATAACACAGTGGAAATT
GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAC	ATCCATCTACAATTAATTGCATTGTTTACGCTTATTTTCA
GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAC	CTTCCATCAATAGCAAGACTAACGATTGCATCCTTTAGTGG
GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAC

>NZ_CP037899|1|1|1297585-1298921|CRT
GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAC	ATTTTTCACAGAAATATTTACCGAAGCAATTTTCCTTA
GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAC	CACTAATTTGGAAGTGACAAATAGATAATCTTGCCCAA
GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAC	ATAGTGATAGCGCTTAAGTGATTAGCAATAGCCTGCATGGT
GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAC	AATATCTTCAACAAGACCAGCTTGATCAGGTGTTTCTATC
GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAC	GATATTCCAGTAACCTTGCTAAATCATGCTCTTTCTCTGG
GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAC	CCCTGTCCCAAATTTTTCGATTGTTCTTATAATTTCTCCAA
GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAC	CATCTAATCGTTCAGCTTCATTACTTTTCCCAAACCCT
GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAC	AGTTATCTTCATAAAACCTCCAAGGTTTAGGGTTTTTCTT
GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAC	CTTGAATCGGGATATAGACCCAATTAATCGGGGGCAA
GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAC	GATATTCCAGTAACCTTGCTAAATCATGCTCTTTCTCTGG
GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAC	CCCTGTCCCAAATTTTTCGATTGTTCTTATAATTTCTCCAA
GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAC	CATCTAATCGTTCAGCTTCATTACTTTTCCCAAACCCT
GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAA	AACAGAAACTTTTTCCTCCATTAAATTACACAACACGA
GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAC	CTTCTGATGACTTCCTCTGGATTTTTTCCAGTAACATTCCA
GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAC	GAAGGGAAAGGAATTCGCTTAGATAACACAGTGGAAATT
GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAC	ATCCATCTACAATTAATTGCATTGTTTACGCTTATTTTCA
GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAC	CTTCCATCAATAGCAAGACTAACGATTGCATCCTTTAGTGG
GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP037899.1\|WP_143958318.1\|1308009_1309521_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|137505
NZ_CP037899.1\|WP_039720705.1\|1312927_1313215_+\|DUF1640-domain-containing-protein	unknown	unknown	gnl\|CDD\|369525
NZ_CP037899.1\|WP_039720723.1\|1291528_1292932_+\|TIGR02584-family-CRISPR-associated-protein	csx1	cd09686_csx1_CAS-III	gnl\|CDD\|187817
NZ_CP037899.1\|WP_039720707.1\|1312202_1312685_-\|phosphohistidine-phosphatase-SixA	unknown	unknown	gnl\|CDD\|224973
NZ_CP037899.1\|WP_143958315.1\|1288955_1290071_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	gnl\|CDD\|187792
NZ_CP037899.1\|WP_039720725.1\|1290097_1290364_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP037899.1\|WP_143958319.1\|1310781_1311897_+\|phosphotransferase	unknown	unknown	unknown
NZ_CP037899.1\|WP_039720722.1\|1292944_1293577_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|187872
NZ_CP037899.1\|WP_052250396.1\|1305362_1308056_+\|DEAD/DEAH-box-helicase	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|224122
NZ_CP037899.1\|WP_039720704.1\|1313704_1315588_-\|cadmium-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319844
NZ_CP037899.1\|WP_039720718.1\|1295224_1295548_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|381608
NZ_CP037899.1\|WP_143958316.1\|1293882_1294608_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238645
NZ_CP037899.1\|WP_052250399.1\|1295909_1296917_+\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NZ_CP037899.1\|WP_052250398.1\|1296919_1297309_+\|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|187856
NZ_CP037899.1\|WP_039720717.1\|1299190_1299454_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP037899.1\|WP_039720710.1\|1309622_1310423_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP037899.1\|WP_039720719.1\|1294865_1295237_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP037899.1\|WP_143958317.1\|1304780_1305236_-\|Slp-family-lipoprotein	unknown	unknown	gnl\|CDD\|377144
NZ_CP037899.1\|WP_039720713.1\|1303065_1304322_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|223515
NZ_CP037899.1\|WP_039720724.1\|1290360_1291401_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	COG1367_cmr1gr7_CAS-III-B	gnl\|CDD\|224286

Protein	Function_ID	Function_description	E-value
NZ_CP037899.1\|WP_143958318.1\|1308009_1309521_+\|hypothetical-protein	gnl\|CDD\|137505	PRK09751, PRK09751, putative ATP-dependent helicase Lhr; Provisional.	5.66303e-21
NZ_CP037899.1\|WP_039720705.1\|1312927_1313215_+\|DUF1640-domain-containing-protein	gnl\|CDD\|369525	pfam07798, DUF1640, Protein of unknown function (DUF1640). This family consists of sequences derived from hypothetical eukaryotic proteins. A region approximately 100 residues in length is featured.	8.11755e-05
NZ_CP037899.1\|WP_039720723.1\|1291528_1292932_+\|TIGR02584-family-CRISPR-associated-protein	gnl\|CDD\|187817	cd09686, Csx1_III-U, CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as NE0113 family.	1.47648e-52
NZ_CP037899.1\|WP_039720707.1\|1312202_1312685_-\|phosphohistidine-phosphatase-SixA	gnl\|CDD\|224973	COG2062, SixA, Phosphohistidine phosphatase SixA [Signal transduction mechanisms].	1.28445e-28
NZ_CP037899.1\|WP_143958315.1\|1288955_1290071_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	gnl\|CDD\|187792	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	8.22133e-21
NZ_CP037899.1\|WP_039720718.1\|1295224_1295548_+\|hypothetical-protein	gnl\|CDD\|381608	cd13926, N-acetylmuramidase_GH108, N-acetylmuramidase domain of the glycosyl hydrolase 108 family. This domain acts as a lysozyme (N-acetylmuramidase), EC:3.2.1.17. It contains a conserved EGGY motif near the N-terminus, the glutamic acid within this motif is essential for catalytic activity. In bacteria, it may activate the secretion of large proteins via the breaking and rearrangement of the peptidoglycan layer during secretion. It is frequently found at the N-terminus of proteins containing a peptidoglycan binding domain.	4.29578e-10
NZ_CP037899.1\|WP_039720722.1\|1292944_1293577_+\|hypothetical-protein	gnl\|CDD\|187872	cd09741, Csx1_III-U, CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as NE0113 family.	5.7045e-07
NZ_CP037899.1\|WP_052250396.1\|1305362_1308056_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|224122	COG1201, Lhr, Lhr-like helicases [General function prediction only].	0
NZ_CP037899.1\|WP_039720704.1\|1313704_1315588_-\|cadmium-translocating-P-type-ATPase	gnl\|CDD\|319844	cd07544, P-type_ATPase_HM, P-type heavy metal-transporting ATPase; uncharacterized subfamily. Uncharacterized subfamily of the heavy metal-transporting ATPases (Type IB ATPases) which transport heavy metal ions (Cu(+), Cu(2+), Zn(2+), Cd(2+), Co(2+), etc.) across biological membranes. The characteristic N-terminal heavy metal associated (HMA) domain of this group is essential for the binding of metal ions. This subclass of P-type ATPase is also referred to as CPx-type ATPases because their amino acid sequences contain a characteristic CPC or CPH motif associated with a stretch of hydrophobic amino acids and N-terminal ion-binding sequences. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NZ_CP037899.1\|WP_143958316.1\|1293882_1294608_+\|hypothetical-protein	gnl\|CDD\|238645	cd01320, ADA, Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.	1.7844e-28
NZ_CP037899.1\|WP_052250399.1\|1295909_1296917_+\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	5.77881e-100
NZ_CP037899.1\|WP_052250398.1\|1296919_1297309_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	5.49815e-25
NZ_CP037899.1\|WP_143958317.1\|1304780_1305236_-\|Slp-family-lipoprotein	gnl\|CDD\|377144	pfam03843, Slp, Outer membrane lipoprotein Slp family.	2.16565e-40
NZ_CP037899.1\|WP_039720713.1\|1303065_1304322_-\|glycosyltransferase	gnl\|CDD\|223515	COG0438, RfaG, Glycosyltransferase [Cell envelope biogenesis, outer membrane].	1.73721e-14
NZ_CP037899.1\|WP_039720724.1\|1290360_1291401_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	gnl\|CDD\|224286	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	8.61724e-17

>NZ_CP037899.1|WP_052250398.1|1296919_1297309_+|CRISPR-associated-endonuclease-Cas2
MQDDNKSNTEKQNEDPSYWWYEAFTPFPSRKNPPGEKKMLTVIAYDICDDRRLHKIAKICEDYGVRVQFSVFECYLEESELEELWEKLLLEIDPKEDRIVSYKIDAKMAKEIKTAGTMVCSEKVICFLV
>NZ_CP037899.1|WP_052250399.1|1295909_1296917_+|CRISPR-associated-endonuclease-Cas1
MPSAYLLQTYTKVSLYSERLQVVSQNEETGSEEVIREIPLRELERLVLDQTVSITTPALCELLVRNIPISFLSFNGQILGGFLPPSNSHGLWRQKQYQNSLDPKSILIFSKQLIKGKIYNQRRSLQRLSLNRNINIENDLQWLNQILFNVSSAATVDEVRGYEGASTARYFQTWASFLPKEFPFERRSTRPPLNPVNACISFGATLLYNEMTALIHLHGLDPALGFLHAPENERWSLALDLIEPFRPVIVEALALDLFSHKILNHEHFEKKNGGCYLNELGRRKFLTQYETRLERQFLSEFAGCRTTLRVQLDASVCSFKAALENPEKFEPFLMN
>NZ_CP037899.1|WP_039720718.1|1295224_1295548_+|hypothetical-protein
MEELKISDKQYMNLWLAAVIAISQFECEFDKEGNVVSEDDPDDPGGLTKYGIDQRSHPDVDIKNLTFTCAVKICVDEFYRYNLHKLPFKLCLFLAIMGMNVGYETAY
>NZ_CP037899.1|WP_039720719.1|1294865_1295237_+|hypothetical-protein
MKVETSYNKIIDILKSRHPIYGGFVKVAAHGIVWVKNKYKDEIEKRQRQYPLSESKQIVKHIRKRSSNTRTLKSVFMENPTESFTIDKLMQLTGKNRHSINTELYRLKNHLEKVGRGVYRWKN
>NZ_CP037899.1|WP_143958316.1|1293882_1294608_+|hypothetical-protein
MKLGDANGSKLLKEPGCLEKQCQLLYEELCKDGVIYAEIRCSPNNYADPTNNRSAWVILQEIREHFQKAMDKKKKENPEAFCQINLIIIADRKSPNLSSLSRHLSLAITANQHFPLKWGNCAVVGVDLAGFESKKTRAELFSYDFTLIHRCGIAVTAHAGENDDAEGIWQAIFKLHARRLGHALSLNNSQDLLRTVVDRHIAIEMCPYANFQIKGFSPMEGKPSYPGKNILKEFMQSFEAF
>NZ_CP037899.1|WP_039720722.1|1292944_1293577_+|hypothetical-protein
MSANKNIFLCTLGVTWPVVMEAADYLSSWDEIHCLTGTGPKIEGNFEKLFSYFSKKDCIFGLWQLKNFDEIKSNEQIQFCNETIFRWYLYHLNKHGLPYACIAGGFKSMGAVLHKAASNFGSKGIFHILIRGVVEPKDEESYEQAKKEKRIFYVELGEEPGFEELRQLDPNIYSLDSFIQNIQNKERNIYHYLLNDSHKKTVYGKNVKRP
>NZ_CP037899.1|WP_039720723.1|1291528_1292932_+|TIGR02584-family-CRISPR-associated-protein
MALTEDIEKGDNWNELQKEFSDKNLSYEIIKIPTGKEENELWKIFESITEKIPHCSSYFHFSQSDYQAWKITKRHQTRDGSFASTSGGKNPIFGFLKMLLNKEKEIILLAVVGTSPAVIPETIWALAHESPPLYPRFIDIITTTIGKKSIDSELLRSKSNSKPIWEEFREWLITEKAIDKNFIILRDIKIISSPLLSQGKCVELEDIRSIKDNEEAADCILEEVRKITENPDTRLIASVAGGRKTMGILLYSSVSMLGREDDRLTHVLVNEPYDDPRLQPKFYFPQQKEQLLRMPSGQEVYAKDAKIELATIPFVKFRELFPKELGRFPGRFTDLVYQYSKEIKELNPQLDFDYQTGELIINEKKIQLHGRELSFFAFLWERRRQKLPPIESHKEINEYFPSFLKKWEKENPQLKHLLKEWNPCPDDYRKCLSVLRKKLKDAGLGKYCQLFFPIRGKVGLPLKNEKF
>NZ_CP037899.1|WP_039720724.1|1290360_1291401_+|type-III-B-CRISPR-module-RAMP-protein-Cmr1
MILNKYKIEFITPCICGGAEPEERAEIRIPSIRGQLRWWFRVLGGFKILSEDVREQEDMIFGSTTNNPSASKLILRLSSPSNILSEKMNGTDLGADRAYRASVPFPLRQQKDRRVIKKNTAFELSIFWKGRKEPFQKTDELKESIDVLISIWVSLGGLGFMSRKGFGALTFSRESYPPHDLKTALSFFKHPENILIKKLNNDTFTDSNSARVSLWKWYKTTRAYKYKEYIKNDREAGLAIANNNKWEGKVYRPALGLPIIQHFSKRNIKNNINWYPRPDSKGRFASPILLRPFKSIKGYLALVIFIEALKWPENKKVYINSIGTEVSLDLYNKIKNDSQLSEFNFL
>NZ_CP037899.1|WP_039720725.1|1290097_1290364_+|hypothetical-protein
MSPEEKEAFILHRNTNDQQFKDKLLSKFNKTNDSEKKIFYICIIKFKQNVWEEIKNMSQKGSNKERKKWGPIVQELYRMAKERKEKLP
>NZ_CP037899.1|WP_143958315.1|1288955_1290071_+|type-III-B-CRISPR-module-RAMP-protein-Cmr6
MNTQLLLIEEVKNALSTEIESRSLFLEKYFNPKLTKDDRKRQFIKAFKIKNNQLMEKKLFSWWEFCNQLPQVSLIYAQLRSRLMVNMAGGVLENAGLCLDRFGIPYIPGSAVKGCARRMAIEKLLEATDDEKPTLLSEIALVFGWTSSDWEEKHKDSSDFYYGCHSQLSLVRKAAEILLETFSIPTRNSDTLEQLLENIPNYAGTVRFLAAYPIPTEFYPTAEKPKQTGDLELDVIACHHQKYYAQDQEYSKAWDTEDPIPVFFPAISPFHIFVFCLQSSQRASEKAKKLAESWLQEGLETLGIGAKTAAGYGWYQICTSQVEKKIQEKKEEEKQKEAAKREEEEKKKEKKKRKKEKKKRKKEKKKRKKQN
>NZ_CP037899.1|WP_039720717.1|1299190_1299454_-|hypothetical-protein
MSLLVPIAFTSLLVMAFEDPWAEENSSTRMLEFYNKAQVPFLLLDQRALGVPNILSVAESLGDGSSLSDYGTLHYERTPGEGRGIPP
>NZ_CP037899.1|WP_039720713.1|1303065_1304322_-|glycosyltransferase
MKIAWFSPLPPQKSGIADFSRNVLTYLKKFSKLILYVEDYWPTESLARDCQVVRYVEKSRISWRLLEQVEACDLVFFNMSNDFRFHSYAYELLLRYPGIVILHDYVLQFFYAGYYLIEKRNFSGYLEKFKELYALDLLTTHPVADGRTVILNFLKKIYVDHSILWYPMNEEVISKASALIVHSDFALQNIKKKFLSKPVVKIDLPYTLPEETLVSLPSNPYSFSVPKDRPKLIAATFGYVLPNKAYELVFKVLQSNPMLQNHMEYWIVGGTFFWYNIHSLAKKYKLQAIVKIFGYQEPEKVQEILSCVDLCIALRDPTMGETSSSLLNQMLLSKPAVVLNVGWYAELPNSCVFKLNPESAEKELEEILKMSLFNRSELIKMGNRAKEYVLAHHTPMHYAQKLMEVGRQFNELINKKID
>NZ_CP037899.1|WP_143958317.1|1304780_1305236_-|Slp-family-lipoprotein
MRVKSLPFFILLFFSTATFSLAGPFTKEEKLILKTEPPFSAIMAHPEAYIGTRLFVGGVIAQVQNLPDRSLMEVIHKPLSKSFKVPLATDLSYGRFLVSTRKFLDPSIYTKGKSVTVIGRLSRVQPGIIGKRPYKYPVISASHIHLWSDTY
>NZ_CP037899.1|WP_052250396.1|1305362_1308056_+|DEAD/DEAH-box-helicase
MENCLHTFLPQVKRWFEHTYGVPTPVQKALWPIVREGKNVVASSPTGSGKTLAAFLVVIDEIWKNTIFSTPFESVYLLYISPLRALGNDIETNLRKPLSEIPHFTKSGEPRLTPLTISVRTGDCSAYERTKQCLHPPHILVTTPESFYLLLTSSSGRKILQTVRTVIVDELHWIADNNRGAHLSLSLERLEHVCKRPIQRIGLSATMRPMETLGHFLSPSAPCHIIDLGIPSKLDARLELPFLPLGHVMPQEGWDKIYRRIIQLTNHYHTTLVFVNTRRLAEKMAHHLGLLMDPEKIGTHHGSLSKETRKAIEKKFKEGKLNVLVATSSLELGIDIGTVEGVCQMGSPRSVSSFIQRIGRSNHNPQNERLAHGHLFPLDIHDLVECVALLYALKQGKIESIHLPEAPLDVLMQQIVAEVAAEPWEEKQLYALFSKAYPYRNLSFEKFHELTQLLCDGFHPLRGSQRALLFFDSNGWLRAKKGAKLRALTSGGTIPDSGDYIVALETDETRIGTVNEDFALESLIGDIFLLGNHPWKIKKVKRGKVLVEDAAGSNPTIPFWLGEAPARSPLLNQTIDTIRKEAAEFLQSFQNQTTATALSKHFEELIEISKEAAEELARFFLLTNLTLGTIPSADNIVLERFFDPTEGTQLVIHSPLGLRLNRAWGLALRKRFCRKFNFELQAAASEEGLVLSLTTVHSFPLKDLMHFLSSHSVRELLIQALIDAPFFGIRWRWTATTALAIPKIRAGKFSSPLVQKMEAENLLSLIFPEATACLENIIGNRSIPKHPLVEQTLAYCLEEVLDCRGLEQLLASIEKGALLLTHRESTNPSFPAVALLSSAPYTYLDPAPLEERRSRSVPFKTTYDPEELTIRTQLQSASHRAVHGFLLAKTKGSRSLF
>NZ_CP037899.1|WP_143958318.1|1308009_1309521_+|hypothetical-protein
MASYWQKPKDREVFFDFLSSVGFLTNEDRIWSPGKDNGLTEWAEALRKEGKIFCIHLSTGYNLWFAQQWLACFSALYPRHFSKTDENASISLVEALSKLLQARLQYEGPVSSKRLALLLNRSVEEVDTALQFLEAQGVVFRGHFQKGLKESTWCHRSVLSQLHKLSRTYCRNAIQPVAIELYQRFLYQWQRLTADTKACGLEGLFAVLKMLEGYFAPLESWEKEILPSRMENYDPSWLDQLSLSGRIVWVIKNKSNRKSASFSHSSCSIAFLERAQASVFKKQPCLPIPSLALSSRAKRLYELIVEKRALFFDELLGASKAAPWEIESDLRELVGCGLVRADCVSALRHFFSKKKRLSLSLRLALSSSWGRWTAETYKLSIEKKSTPRLSETTESALSTEKKIEKLLRMLLRRYGIFFKKLLEKENVYYGLWPQLLPILRLMEMREELLAGQFIEGMGEQFALPEAITMLKKIKEEVSSPFQPSVSVFDPSSLSEIIKKPVQQ
>NZ_CP037899.1|WP_039720710.1|1309622_1310423_-|hypothetical-protein
MKAYEKFLATAIQLRTLPDETINLVNELIKSIVSLHLTNDKLQHLNVETLEEDKSPKLSSDIFLKVIEKAGESGITLDELSDKLRCPKATVEKMLTEHSQDIEYVGKERVALKKFVQPAALPSSLRGRSRLTVEKFIEIVKEAPIHIDDLAAKLGVKSSSLRVFLSRHRKELKNIRLEKSYFKFVESSRRGQDNIRTEKVMAILAEAGGRISNKDLAFKLGKTTRQISNWWTSLIRRKAKQLEKLDYNPKEHVFLLKAATENSESS
>NZ_CP037899.1|WP_143958319.1|1310781_1311897_+|phosphotransferase
MIFSPFVSNLKNKRLPKDYEDWEKNFPELFFLEAKQPKVEIYLQSIQFLYPQESIVSLTTESARRIDKIVRVETSHRTFLLKQSRPWIDCCPSSRAPMGRILKEAEFYSLCSKDSILRSYVPSLLYVDKTNYLLILSELGKKDYSAIYEKEPFSIDELTSLLDFLSYLHSTFYQKKMIVKFENQAMRKYHWRNLFVSPMKQKKSLSDYKKNESINRLKRKFLADWKFYSAMKQAAYHYLDQGPTLIHGNFLPFSWIRTGTGVGISDFESMICGRPEIDLGLLLSHLLLAGLVEHFFYALSYYRLPESFELTLAFKIAGAEIFRRCIGPDALGCLTPQTKENLLSTSYMLLTEEKEVLFQSIRKMLNRQLTF
>NZ_CP037899.1|WP_039720707.1|1312202_1312685_-|phosphohistidine-phosphatase-SixA
MNLYLIRHATAEPKADTDAQRNLVPEGKEEAKIVGKGFKKLGIKPDVIFSSPLNRALQTAKMIAQTLKFENEVVIIPELENGHSASELLEVIKKYDSQSSLLLVGHMPSLAEFLSDFIGASRPQAFPFDKGGVAAIRSEQLRLGVWELRFMLRQSQLRKF
>NZ_CP037899.1|WP_039720705.1|1312927_1313215_+|DUF1640-domain-containing-protein
MASTFDTLKLSKRLEEAGLTQKQAEIISEALVEGFLEENKKTASFNAEQRLEMQLSLRIDKLESKIENLDKRLSQYFGLLMGSIVLLGIILKIHL
>NZ_CP037899.1|WP_039720704.1|1313704_1315588_-|cadmium-translocating-P-type-ATPase
MSPETYRKTVGQKRTFIEKGTELIALGSLLSIIAYVVLRYLLKLEPFVATLPLFFSYSIGGIPLLIELGWKLFCLEFGSDLLAGISIISSFLLGEYLAGAIVILMLSGGQLLERLAIYHASAVLRALAQRMPTVAHQKLNASVKDIGLKEVIEGIELIIYPHEICPADGVVIEGKTVMDESYLTGEPFMISKTVGSTVLSGAINGNAAIRIRVLRKPEDSRYAKIMEVIRKTEEAKPRIRRLAEQIGAFYTPLAIFIATAAGMVASSPLRFLSVMVIATPCPLLLAIPVAILGSISLCARRSIVVKDSQALELISKCQTAIFDKTGTLTYGLPKLVEESYASFFEPRFVFELVASLERYSKHPLAAAVLQKATEKKIEFRELSEVHEPSGKGLYGQFGKMSVRITTRSKLPSNIKGLEQMPRESEGLECVVLIDEVYAATFRFRDAPREESKPFIAHLSAKHGFKKVLIVSGDRESEVRYLAKQVGVSTLYAQCSPEQKLEIVRKETNQAKTLFVGDGINDAPAMMVATVGIAVGLNSEPTTEAAKVVIMENTLMKVDEFLHIGRRMRMIALQSAIGGMMLSCMGMGIAAIGGLTPVEGAIFQEIIDVFSLLNALRTVFPPKTIRDF

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

710389 : 770322

Catovirus(14.29%)

tRNA,protease,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039721129.1\|710389_711796_-\|tRNA	cysteine--tRNA ligase	A0A0G2Y344	Acanthamoeba_polyphaga_mimivirus	2.4e-50	34.3
WP_039721128.1\|711843_713265_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA
WP_039721127.1\|713306_713999_-	HAD family hydrolase	NA	NA	NA	NA
WP_039721126.1\|714033_714816_-	enoyl-ACP reductase	NA	NA	NA	NA
WP_039721124.1\|715688_717626_+	UDP-N-acetylglucosamine--LPS N-acetylglucosamine transferase	NA	NA	NA	NA
WP_039721348.1\|717633_718623_+	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA
WP_039721123.1\|718996_719812_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_039721122.1\|719904_720345_+	hypothetical protein	NA	NA	NA	NA
WP_143958250.1\|721403_722165_+	ATP-binding cassette domain-containing protein	A0A1V0SBM3	Catovirus	2.4e-12	28.5
WP_039721120.1\|722173_723040_+	metal ABC transporter permease	NA	NA	NA	NA
WP_143958251.1\|723036_723666_-	HAD hydrolase-like protein	NA	NA	NA	NA
WP_143958252.1\|723697_724741_-	LOG family protein	F4YCQ1	Synechococcus_phage	2.4e-18	33.5
WP_039721119.1\|724769_726605_+	bifunctional homocysteine S-methyltransferase/methylenetetrahydrofolate reductase	NA	NA	NA	NA
WP_039721118.1\|726601_727900_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_039721117.1\|728054_728669_+	hypothetical protein	NA	NA	NA	NA
WP_079254236.1\|729840_730638_+	Mut7-C ubiquitin/RNAse domain-containing protein	NA	NA	NA	NA
WP_039721115.1\|730870_731680_+	hydrogenase	NA	NA	NA	NA
WP_039721114.1\|731829_733359_+	glucan biosynthesis protein	NA	NA	NA	NA
WP_143958253.1\|733382_734888_+	glucan biosynthesis protein	NA	NA	NA	NA
WP_143958254.1\|734899_735277_+	hypothetical protein	NA	NA	NA	NA
WP_039721111.1\|735299_737378_+	glucans biosynthesis glucosyltransferase MdoH	NA	NA	NA	NA
WP_039721110.1\|737416_737896_+\|protease	hydrogenase maturation protease	NA	NA	NA	NA
WP_039721109.1\|737900_738242_+	hydrogenase maturation nickel metallochaperone HypA	NA	NA	NA	NA
WP_039721108.1\|738244_738937_+	endonuclease V	NA	NA	NA	NA
WP_009060748.1\|739020_739323_+	GYD domain-containing protein	NA	NA	NA	NA
WP_052250446.1\|739349_740312_-	hypothetical protein	A0A291AUP8	Sinorhizobium_phage	1.1e-35	33.5
WP_039721107.1\|740308_741154_-	Ku protein	A0A218M9C0	Mycobacterium_phage	4.4e-31	32.6
WP_161792027.1\|741933_742782_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_039721106.1\|743273_743858_-	carbonic anhydrase	NA	NA	NA	NA
WP_143958255.1\|743999_744428_-	hypothetical protein	NA	NA	NA	NA
WP_039721103.1\|744935_745376_-	SRPBCC domain-containing protein	NA	NA	NA	NA
WP_039721102.1\|745401_746094_-	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	NA	NA	NA
WP_039721101.1\|746074_747910_-	ribonucleoside triphosphate reductase	D9ZNH0	Clostridium_phage	1.1e-140	43.8
WP_143958256.1\|747977_748358_-	DUF302 domain-containing protein	NA	NA	NA	NA
WP_039721100.1\|748570_749605_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_143958443.1\|749759_750158_-\|transposase	IS200/IS605 family transposase	I4AZI8	Saccharomonospora_phage	4.3e-21	41.4
WP_143958257.1\|750188_751469_+\|transposase	transposase	A0A0H3V0V2	Geobacillus_virus	3.3e-38	28.0
WP_039722299.1\|751509_752205_-	DsbA family protein	NA	NA	NA	NA
WP_143958258.1\|752326_752623_+	hypothetical protein	NA	NA	NA	NA
WP_039722298.1\|752652_753441_-	MBL fold metallo-hydrolase	A0A2H4J3R0	uncultured_Caudovirales_phage	7.0e-31	36.1
WP_039722297.1\|753534_754920_+	RNA polymerase factor sigma-54	NA	NA	NA	NA
WP_039722296.1\|754980_755193_-	DUF2905 domain-containing protein	NA	NA	NA	NA
WP_039722295.1\|755284_758032_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	5.0e-84	38.2
WP_039722294.1\|758062_758809_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_039722292.1\|760224_761412_+	molybdopterin-synthase adenylyltransferase MoeB	A0A1V0SAV8	Catovirus	4.6e-10	28.8
WP_134372683.1\|762034_762361_+\|protease	ATP-dependent Clp protease adapter ClpS	NA	NA	NA	NA
WP_039722291.1\|762357_762867_+	DUF2017 family protein	NA	NA	NA	NA
WP_039722290.1\|762888_765348_-	glycogen/starch/alpha-glucan phosphorylase	Q8B3H5	Iris_mild_mosaic_virus	1.3e-14	47.1
WP_039722288.1\|767045_767321_-	hypothetical protein	NA	NA	NA	NA
WP_143958443.1\|768612_769011_-\|transposase	IS200/IS605 family transposase	I4AZI8	Saccharomonospora_phage	4.3e-21	41.4
WP_143958260.1\|769041_770322_+\|transposase	transposase	A0A0H3V0V2	Geobacillus_virus	1.9e-38	28.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage