CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP041587	Acinetobacter baumannii strain J9 chromosome, complete genome	3 crisprs	DEDDh,cas3f,csa3,cas3,WYL,RT	12	2
NZ_CP041589	Acinetobacter baumannii strain J9 plasmid pJ9-2, complete sequence	0 crisprs	NA	0	0
NZ_CP041590	Acinetobacter baumannii strain J9 plasmid pJ9-3, complete sequence	0 crisprs	DEDDh	0	3
NZ_CP041588	Acinetobacter baumannii strain J9 plasmid pJ9-1, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP041587_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041587_1

985831-987173

Unclear

Consensus_repeat	Method
TTTCTAAATCATCTNNGCGATGA	CRT
TTTCTAAATCATCTGGGCGATGA	CRISPRCasFinder
TTTCTAAATCATCTGGGCGATGA	PILER-CR

22 spacers

cas3f

The CRISPR arrays of NZ_CP041587_1

>merge|NZ_CP041587|1|985831-987173|CRT,CRISPRCasFinder,PILER-CR
TTATTAAATCATCTATGCGATGAGCGACCCTGACTGTAACCATAAGGAAGCATCAGCTTGTTTCTAAATCATCTATGCGATGACAAACCTAATGTAGACCAATAAATCTTGCATAGATCTTTTCTAAATCATCTGGGCGATGAGCAACCATTAATTGATGCGTTCTGTCGCGCAATGATATTTCTAAATCATCTACGCGATGAACAAAATTGACGAGGATGATGACTGGACTGATCCGAATTTCTAAATCATCTGGACGATGATGAACAATGAGGAAGGCTCATATGAAAATGCTTTAATTTTCTAAATCATCTGTGCGATGACGAACTGATGACACATTTAAATGAAAGCTCGCATGTCTTTCTAAATCATCTGAGCAATGAGCAACACCAAAAACGATCTGAACAACAACATCAACACTTTCTAAATCATCTATGCGATGATGAACCTGATAATCTTTTTGACCACGTCCCCGATTGTTTTCTAAATCAATTGTGTGATCAGCAACTTTTAGTCAATACTTTAACTGGTGGTTATAAATTTCTAAATCATCTGGGCGATGAGCGACGAAGAAAGTGATGGTCATATCTTCAGTGAGATTTTCTAAATCATCTGAGCGATGATCAATATATTGGATTAAAGTCCATCATTAGAAGACGTTTTCTAAATCATCTAAGCGATGAGCAACAAAATGGCTACAAGCTCATTAAATCATTTGAATTTCTAAATCATCTATACGATGAGCAACTCACAAGAAGCAAAAGCCCTTGGAATAAAAATTTTCTAAATCATCTATGCGATGAGCAACTTAGGAACAAAGCAGTCGGGTATGGCAGATAATTTCTAAATCATCTGGGCGATGAGCAACATACCCGTTCACCTTTGGTTGTGTTTGGTGATTTTCTAAATCATCTACACGATGAGCAACGTGTACGTCTAGCTATATATGCTGAACCATCATTTCTAAATCATCTGGGTGATGAGAAACAGGATGACCTTTCGAAGCATATCGAAAAACACTTTCTAAATCATCTACGCGATGAGGAACGCGTGGGCTAAAAGCCAATTCGCACTAATACCTTTCTAAATCATCTGGGCGATGAGAAACCTTATACATTTGGTGTTCAGAAGGACTATGACTTTCTAAATCATCTGGGCGATGACGAACTTTGTGTTACTTCTGTAAATGGCTTGTCTGTATTTCTAAATCATCTGGGCGATGACGAACACGGCGTTGGTAAGTCAGGCAAAACGGCTGATTTTCTAAATCATCTGGGCGATGACGAACCGGTATAACTACTTGAGCACGTTCACCAGTTGTTTCTAAATCATCTGGGCGATGA

>NZ_CP041587|1|1|985831-987173|CRT
TTATTAAATCATCTATGCGATGA	GCGACCCTGACTGTAACCATAAGGAAGCATCAGCTTG
TTTCTAAATCATCTATGCGATGA	CAAACCTAATGTAGACCAATAAATCTTGCATAGATCT
TTTCTAAATCATCTGGGCGATGA	GCAACCATTAATTGATGCGTTCTGTCGCGCAATGATA
TTTCTAAATCATCTACGCGATGA	ACAAAATTGACGAGGATGATGACTGGACTGATCCGAA
TTTCTAAATCATCTGGACGATGA	TGAACAATGAGGAAGGCTCATATGAAAATGCTTTAAT
TTTCTAAATCATCTGTGCGATGA	CGAACTGATGACACATTTAAATGAAAGCTCGCATGTC
TTTCTAAATCATCTGAGCAATGA	GCAACACCAAAAACGATCTGAACAACAACATCAACAC
TTTCTAAATCATCTATGCGATGA	TGAACCTGATAATCTTTTTGACCACGTCCCCGATTGT
TTTCTAAATCAATTGTGTGATCA	GCAACTTTTAGTCAATACTTTAACTGGTGGTTATAAA
TTTCTAAATCATCTGGGCGATGA	GCGACGAAGAAAGTGATGGTCATATCTTCAGTGAGAT
TTTCTAAATCATCTGAGCGATGA	TCAATATATTGGATTAAAGTCCATCATTAGAAGACGT
TTTCTAAATCATCTAAGCGATGA	GCAACAAAATGGCTACAAGCTCATTAAATCATTTGAA
TTTCTAAATCATCTATACGATGA	GCAACTCACAAGAAGCAAAAGCCCTTGGAATAAAAAT
TTTCTAAATCATCTATGCGATGA	GCAACTTAGGAACAAAGCAGTCGGGTATGGCAGATAA
TTTCTAAATCATCTGGGCGATGA	GCAACATACCCGTTCACCTTTGGTTGTGTTTGGTGAT
TTTCTAAATCATCTACACGATGA	GCAACGTGTACGTCTAGCTATATATGCTGAACCATCA
TTTCTAAATCATCTGGGTGATGA	GAAACAGGATGACCTTTCGAAGCATATCGAAAAACAC
TTTCTAAATCATCTACGCGATGA	GGAACGCGTGGGCTAAAAGCCAATTCGCACTAATACC
TTTCTAAATCATCTGGGCGATGA	GAAACCTTATACATTTGGTGTTCAGAAGGACTATGAC
TTTCTAAATCATCTGGGCGATGA	CGAACTTTGTGTTACTTCTGTAAATGGCTTGTCTGTA
TTTCTAAATCATCTGGGCGATGA	CGAACACGGCGTTGGTAAGTCAGGCAAAACGGCTGAT
TTTCTAAATCATCTGGGCGATGA	CGAACCGGTATAACTACTTGAGCACGTTCACCAGTTG
TTTCTAAATCATCTGGGCGATGA

>NZ_CP041587|1|1|985891-987173|CRISPRCasFinder
TTTCTAAATCATCTATGCGATGA	CAAACCTAATGTAGACCAATAAATCTTGCATAGATCT
TTTCTAAATCATCTGGGCGATGA	GCAACCATTAATTGATGCGTTCTGTCGCGCAATGATA
TTTCTAAATCATCTACGCGATGA	ACAAAATTGACGAGGATGATGACTGGACTGATCCGAA
TTTCTAAATCATCTGGACGATGA	TGAACAATGAGGAAGGCTCATATGAAAATGCTTTAAT
TTTCTAAATCATCTGTGCGATGA	CGAACTGATGACACATTTAAATGAAAGCTCGCATGTC
TTTCTAAATCATCTGAGCAATGA	GCAACACCAAAAACGATCTGAACAACAACATCAACAC
TTTCTAAATCATCTATGCGATGA	TGAACCTGATAATCTTTTTGACCACGTCCCCGATTGT
TTTCTAAATCAATTGTGTGATCA	GCAACTTTTAGTCAATACTTTAACTGGTGGTTATAAA
TTTCTAAATCATCTGGGCGATGA	GCGACGAAGAAAGTGATGGTCATATCTTCAGTGAGAT
TTTCTAAATCATCTGAGCGATGA	TCAATATATTGGATTAAAGTCCATCATTAGAAGACGT
TTTCTAAATCATCTAAGCGATGA	GCAACAAAATGGCTACAAGCTCATTAAATCATTTGAA
TTTCTAAATCATCTATACGATGA	GCAACTCACAAGAAGCAAAAGCCCTTGGAATAAAAAT
TTTCTAAATCATCTATGCGATGA	GCAACTTAGGAACAAAGCAGTCGGGTATGGCAGATAA
TTTCTAAATCATCTGGGCGATGA	GCAACATACCCGTTCACCTTTGGTTGTGTTTGGTGAT
TTTCTAAATCATCTACACGATGA	GCAACGTGTACGTCTAGCTATATATGCTGAACCATCA
TTTCTAAATCATCTGGGTGATGA	GAAACAGGATGACCTTTCGAAGCATATCGAAAAACAC
TTTCTAAATCATCTACGCGATGA	GGAACGCGTGGGCTAAAAGCCAATTCGCACTAATACC
TTTCTAAATCATCTGGGCGATGA	GAAACCTTATACATTTGGTGTTCAGAAGGACTATGAC
TTTCTAAATCATCTGGGCGATGA	CGAACTTTGTGTTACTTCTGTAAATGGCTTGTCTGTA
TTTCTAAATCATCTGGGCGATGA	CGAACACGGCGTTGGTAAGTCAGGCAAAACGGCTGAT
TTTCTAAATCATCTGGGCGATGA	CGAACCGGTATAACTACTTGAGCACGTTCACCAGTTG
TTTCTAAATCATCTGGGCGATGA

>NZ_CP041587|1|1|986911-987173|PILER-CR
TTTCTAAATCATCTGGGCGATGA	GAAACCTTATACATTTGGTGTTCAGAAGGACTATGAC
TTTCTAAATCATCTGGGCGATGA	CGAACTTTGTGTTACTTCTGTAAATGGCTTGTCTGTA
TTTCTAAATCATCTGGGCGATGA	CGAACACGGCGTTGGTAAGTCAGGCAAAACGGCTGAT
TTTCTAAATCATCTGGGCGATGA	CGAACCGGTATAACTACTTGAGCACGTTCACCAGTTG
TTTCTAAATCATCTGGGCGATGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041587.1\|WP_000837437.1\|991423_991951_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041587.1\|WP_002065346.1\|994962_995391_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041587.1\|WP_081038570.1\|974435_974948_+\|OsmC-family-protein	unknown	unknown	gnl\|CDD\|224678
NZ_CP041587.1\|WP_000128705.1\|980280_981432_+\|EmrA/EmrK-family-multidrug-efflux-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273385
NZ_CP041587.1\|WP_000772281.1\|994388_994874_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041587.1\|WP_001051771.1\|992700_993240_+\|PAAR-domain-containing-protein	unknown	unknown	gnl\|CDD\|269829
NZ_CP041587.1\|WP_000203573.1\|992256_992697_+\|PAAR-domain-containing-protein	unknown	unknown	gnl\|CDD\|269821
NZ_CP041587.1\|WP_000660074.1\|993880_994339_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041587.1\|WP_000164151.1\|975779_976232_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041587.1\|WP_000143473.1\|990831_991227_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041587.1\|WP_000506972.1\|993241_993874_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041587.1\|WP_000539511.1\|979477_980011_+\|thioesterase-family-protein	unknown	unknown	gnl\|CDD\|183276
NZ_CP041587.1\|WP_001982574.1\|978357_979371_-\|porphobilinogen-synthase	unknown	unknown	gnl\|CDD\|236450
NZ_CP041587.1\|WP_001039376.1\|976319_977225_+\|TIGR01777-family-protein	unknown	unknown	gnl\|CDD\|224015
NZ_CP041587.1\|WP_000675263.1\|995652_995937_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041587.1\|WP_001091954.1\|975022_975400_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319911
NZ_CP041587.1\|WP_171054470.1\|983286_985251_+\|gamma-glutamyltransferase	unknown	unknown	gnl\|CDD\|223482
NZ_CP041587.1\|WP_000558148.1\|987425_990662_+\|type-I-F-CRISPR-associated-helicase-Cas3	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|274201
NZ_CP041587.1\|WP_000546687.1\|977216_978332_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223737
NZ_CP041587.1\|WP_000857095.1\|981438_982962_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|129794

Protein	Function_ID	Function_description	E-value
NZ_CP041587.1\|WP_081038570.1\|974435_974948_+\|OsmC-family-protein	gnl\|CDD\|224678	COG1764, osmC, Organic hydroperoxide reductase [Secondary metabolites biosynthesis, transport and catabolism].	2.30315e-23
NZ_CP041587.1\|WP_000128705.1\|980280_981432_+\|EmrA/EmrK-family-multidrug-efflux-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273385	TIGR00998, Probable_multidrug_resistance_protein_EmrK, efflux pump membrane protein (multidrug resistance protein A). [Transport and binding proteins, Other].	6.12478e-122
NZ_CP041587.1\|WP_001051771.1\|992700_993240_+\|PAAR-domain-containing-protein	gnl\|CDD\|269829	cd14744, PAAR_CT_2, proline-alanine-alanine-arginine (PAAR) domain with uncharacterized C-terminal extension. This domain is found in the PAAR (proline-alanine-alanine-arginine) repeat family of mostly beta- and gamma-proteobacteria, and forms a sharp conical extension on the VgrG spike, a trimeric protein complex of the bacterial type VI secretion system (T6SS). Most members contain C-terminal domain extensions corresponding to several uncharacterized domains such as S-type pyocin, DUF2235, DUF2345 and cytotoxic proteins. However, these terminal domains are exposed to solution, and do not distort the binding site of VgrG. The pointed tip of the PAAR domain is stabilized by a zinc atom positioned close to the cone's vertex and is likely to be important for its integrity during penetration of the target cell envelope. VgrG proteins are orthologous to the central baseplate spikes of bacteriophages with contractile tails, and genes encoding proteins with PAAR motifs have been frequently found immediately downstream from vgrG-like genes.	1.20894e-18
NZ_CP041587.1\|WP_000203573.1\|992256_992697_+\|PAAR-domain-containing-protein	gnl\|CDD\|269821	cd14671, PAAR_like, proline-alanine-alanine-arginine (PAAR) repeat superfamily. This domain is found in the PAAR (proline-alanine-alanine-arginine) repeat superfamily, where it forms a sharp conical extension on the VgrG spike, a trimeric protein complex of the bacterial type VI secretion system (T6SS). The T6SS is responsible for translocation of a wide variety of toxic effector molecules, allowing predatory cells to kill prokaryotic as well as eukaryotic prey cells. The pointed tip of the PAAR domain is stabilized by a zinc atom positioned close to the cone's vertex and is likely to be important for its integrity during penetration of the target cell envelope. The PAAR-repeat proteins form a diverse superfamily with several subgroups extended both N- and C-terminally by domains with various predicted functions; the termini are exposed to solution, and do not distort the VgrG binding site. VgrG proteins are orthologous to the central baseplate spikes of bacteriophages with contractile tails, and genes encoding proteins with PAAR motifs have been frequently found immediately downstream from vgrG-like genes. It has been shown that PAAR proteins are essential for T6SS-mediated secretion and target cell killing by Vibrio cholerae (encodes two PAAR proteins) and Acinetobacter baylyi (encodes three PAAR proteins); inactivation of all these PAAR genes results in inactivation of Hcp secretion as well as T6SS-dependent killing of E. coli.	3.11729e-11
NZ_CP041587.1\|WP_000539511.1\|979477_980011_+\|thioesterase-family-protein	gnl\|CDD\|183276	PRK11688, PRK11688, thioesterase family protein.	2.04641e-40
NZ_CP041587.1\|WP_001982574.1\|978357_979371_-\|porphobilinogen-synthase	gnl\|CDD\|236450	PRK09283, PRK09283, porphobilinogen synthase.	0
NZ_CP041587.1\|WP_001039376.1\|976319_977225_+\|TIGR01777-family-protein	gnl\|CDD\|224015	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only].	4.29346e-98
NZ_CP041587.1\|WP_001091954.1\|975022_975400_-\|VOC-family-protein	gnl\|CDD\|319911	cd07247, SgaA_N_like, N-terminal domain of Streptomyces griseus SgaA and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a streptomycin resistance protein.	4.08685e-22
NZ_CP041587.1\|WP_171054470.1\|983286_985251_+\|gamma-glutamyltransferase	gnl\|CDD\|223482	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism].	0
NZ_CP041587.1\|WP_000558148.1\|987425_990662_+\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|274201	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.	0
NZ_CP041587.1\|WP_000546687.1\|977216_978332_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	1.48275e-64
NZ_CP041587.1\|WP_000857095.1\|981438_982962_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	4.961e-131

>NZ_CP041587.1|WP_171054470.1|983286_985251_+|gamma-glutamyltransferase
MFSSLLAVGLLQGCGDDSSSDQPKDDSNTTPPNLIVDNDPTSCSKLAQDGSSVVVGSNQNGDPAAPEGASGYRLGNTVKYADKYMVVANTPLAVKAGCDVLKAGGSAVDAAVAVQAVLGLVEPQSSTIAGSGFMMYYDAKTKQVTAYDGRETAPAAANEYYLIRQDIYDPNSPAPVPSARRSGRSIGVPGVMRLLEQAQKEHGKLKWNQLFGEAIGLADNGFRIPGRLADAIASNASNLALDANAMATYFYPDGSPRKVGETMTNKAYARTLEALASQGANALHTGPIAQAIVAKAGQTVGDDPARTPITPSLMTLQDLSNYQVKKRDPICTTYRDRYYVCTMPPPSSGGIAVAQTLGILENFDMSLYPPKNPENEGGVPDVMGVHLVSEAERLAYADRDKYVADTDFVRLPAQGIPSFIDKNYLKQRAALINPNQSMGVAPAGNFNTAAGVDTTVEHGTTQFTIVDAYGNVVSMTSTVESSMGSFHMVDGFLLSNQLTDFSANPYDSTGAPVANRVEGGKRPRSTMAPTLVFKGTTPDEFYMATGSPGGGTIIQYVVKTLVGALDWNLNAQQATSLVNFGATNSKNTNIDSSNVQLSLVDLIEGLKAKGHGISNTAQTSGISTIMKVNINNQSKYAGGVDPRREGIVLGNGAL
>NZ_CP041587.1|WP_000857095.1|981438_982962_+|DHA2-family-efflux-MFS-transporter-permease-subunit
MKTQTPFAELSGGRLLLAAFVIALSNFMVVLDTTIANVSVPHITGNLAVSSTQGTWVVTSYAVAEAICVPLTGWLAGRFGTVRVFIFGLIGFTVFSFLCGLATSLEMLVFFRIGQGLCGGPLMPLSQTLLMRIFPQEKHAQAMGLWAMTTVVGPILGPILGGLISDNLSWHWIFFINLPVGIVCVLAAMRLLRVAETETISLRIDTVGLGLLILWIGALQLMLDLGHERDWFNSTSIVVLALTAAIGFVVFLIWELTDKHPVVDVKVFRHRGFAISVLALSLGFGAFFGSIVLIPQWLQMNLSYTATWAGYLTATMGFGSLTMSPIVAKLSTKHDPRALASFGLILLGIVTLMRAFWTTDADFMALAWPQILQGFAVPFFFIPLSNIALGSVLQQEIASAAGLMNFLRTMAGAIGASIAVTVWDDHAKVARSEMVSNLHTTEVQNTLLQNGFTADSTLGIISNLVDKEAITMSANHVFLLFAIVFVFAGLVIWLCPKPKQVSGMPSH
>NZ_CP041587.1|WP_000128705.1|980280_981432_+|EmrA/EmrK-family-multidrug-efflux-transporter-periplasmic-adaptor-subunit
MTDAQSNVQETVPTTSASDDNMQNKRKKFLGFFALILLIAAILYAIWALFLNHSVSTDNAYVGAETAQITSMVSGQVAQVLVKDTQTVHRGDVLVRIDDRDAKIALAQAEAELAKAKRQYKQTAANSSSLNSQVVVRADEINSAKAQVDQAQADYDKAALELNRRAQLAASGAVSKEELTKAQSAVETAKAGLELAKAGLAQATSSRKAAESTLAANEALIQGVSETSTPDVQVAQAHVEQAQLDLERTVIRAPVDGVITRRNIQVGQRVAPGTSMMMIVPLNDLYVDANFKESQLKKVRPGQPVTLTSDLYGDDVEYHGKVVGFSGGTGSAFALIPAQNATGNWIKVVQRLPVRIALDPKELAEHPLRVGLSMEAKVDLSAK
>NZ_CP041587.1|WP_000539511.1|979477_980011_+|thioesterase-family-protein
MGVYHAFKFRQRMSDEKKNWTGNIQLGAKTDLNVVLNQLCKAFNSCPFFKHSGMIMRVVDGHIEGYVEMQPDLIGNLAFQVLHGGVAATLLDSIGGIVAMEHLYRRSTPETLPETIKQVTRLATVDMRVDYLAPGRGKYFIARAEVLRLGRKGCTMRMTMVNDEDKQIAAGIASYAY
>NZ_CP041587.1|WP_001982574.1|978357_979371_-|porphobilinogen-synthase
MTYTFNRPAFPATRMRRIRKNDQLRAMVSETQLTTNHLIYPVFVLPGQNQTQDIPSMPNIQRLSADLLLKKAERLLELGVSKLALFPVTPQEDKSLTAEAAWREDGLVQTACRLLKKELPEMVLITDGALDPYTTHGQDGIIDETGYVLNDETVECLIKQALSHAEAGAEVIAPSDMMDGRIGAIRQALEANGHIYTNIMAYSAKYASSFYGPFRDAVGSASNLKGGNKYNYQMDFANRAEALHEIALDIQEGADMVIVKPGMPYLDVVREVKDTFGIPTFIYQVSGEYAMLAGAIQNGWLSDSVILESLMCCRRAGADGIWTYFAETAAEKLKEMN
>NZ_CP041587.1|WP_000546687.1|977216_978332_-|FAD-dependent-oxidoreductase
MHIAIIGAGISGLMSALELVEQGCTISIFDQQQAGQAASWAGGGILSPMYPWRYVHAVNQLAQFGKASYQAWNQKLYPVTGIDFEIHDTGMLIFDEEDFDIGLSYAEQHQEPMQRCEYLQRDALEQVNPHISDQFQEAIYFPELSNIRNPRVLQSLISYLKQHPNVEFFEHTPVKKLIQQGDVIQALQTEDGRKHTADHFVITSGAWSHYWNSQLQLEIPVEPVQGQMLLFKTPAHWLPTMCMNRVMYLIPRMDGHIVCGSSMAHRGFDTSTDETTQHNILEACLEMVPELADFPIVHRWAGLRPSSPNGVPYIGKMPEMDNLWANFGHFRNGLCMGAGSAQLLRQLMLGQPTLVDAKAYSPERLQNKILA
>NZ_CP041587.1|WP_001039376.1|976319_977225_+|TIGR01777-family-protein
MNKNVLITGASGFIGTHLIRFLLQKNYNVIAVTRQVGKKSDHPALQWVQKFEDISTRQIDYVVNLAGANIGEKRWTESRKKQLIESRVNTTQKLYAWLKQSQIFPEVIVSGSAIGYYGIDNQEKWTEVCTEQSSPQPIFMSQLCQEWERAALADAQQNTKIIRLGVVFGQGGGILPKMLLPIRLNLVGQIGHGSQPVVWVHIEDVLNAIEFIFKHPQSAQIHNVVAPENVTQKVFVEQAAKVLNKKPLLSAPSTVFRCLLGEQSQLILNGQYVKPAALQAEGFEFAYPQLKMALENILASG
>NZ_CP041587.1|WP_000164151.1|975779_976232_+|hypothetical-protein
MTKLRSYFLWFFALCIVLTLIVGVIAALLPASVGGILTAVPYLGAMIFVLFRFLKKERRAPTVPEKKKFTLGFTLIFWGYNLCGVLFGLFLFSRKDPEILQNFMLYLKQPQFLSIMVIMLLMLAIPLYLITYWFYGKQAQRMADKMFNVS
>NZ_CP041587.1|WP_001091954.1|975022_975400_-|VOC-family-protein
MNTIAYFEIQSSNPARDAQFYQAVFGWQFKLDESLPIEYYRIETPSIMGGLLKRPAQTPPMEYGTNAFTCSVQVENFDEVAAKILAQGGMVAMDKFAIPGRAWHGYFVDLDHNVFGIFQVDEDAA
>NZ_CP041587.1|WP_081038570.1|974435_974948_+|OsmC-family-protein
MLLSGQTMNFENKMTIHKYEVKIQWEGNTGTGTSSYRSYKRDFSIQHPQKTTIQGSSDPTYLGDVTRWNPEDLLVASASACHKLWYLHLCAVNHIHVVSYVDHALGFMEDTDPVKRGHFTQIILRPEVVLEKGADQELAAKLHEEAHHECMIANSVNFPITCEASFSFAE
>NZ_CP041587.1|WP_000558148.1|987425_990662_+|type-I-F-CRISPR-associated-helicase-Cas3
MHVILISACEKRALKKTRAILDSYAIRTGDSSWQAPMTMDGLKEIRSALKKVATRQTAVAAYINFGVRRMKLVWVVGAKHKFAHDGAYPVASTKKQQKLLMLDEWVKASSLLAGAAGDMHDIGKASQHFQKKLSPEMAGQKIKDDIRHEWLSLKLLQQLRKNGWDWQLAWKNLGKGLEKFTLGDRQEIEQGIQNELEAVDYLVVTHHGLLGVEEALKNDPLALPHYENHVRTLVPSLEQMSCAGELPDSIFKSHQKRMQRLTALIPKQKTDQLLYWKALALHSRAALIHADHIVSAQQYSLQKPENVSLFANTKLKTIDQDKKAKLQDQPLEWHLHQVGDRASRIAVQMMTDLSLSGLSEQTVEYICQPTTHPRFQWQNIAANALQKNIQKHPETPALVFNIAGTGSGKTRMNLRAACTLRPDDPRIAIALNLRSLTLQTGHALKTSMNLSEDEIAVIIGDTVTQTLFDQSKEKIEFVDEDENHPEPIFDAWGEDCDLPEWLHPLFTVEKNGHKVLDQKETTILASPLLVSTIDYLIAAGEPHRQGHHVKALLRVVSSDLILDEVDGYEPKALIAVLRLVQLAAMYGRNVICSSATLSLTVAKTIHRAFESGMQMRAALYGTEKKSIIAIIDNELKPQVWLERSNQKSEFNTNYQKHLDNLQVHLLSKPTHRLAQLLSLPETTVLSWKQSVLEAVKQLHQEHAWNFKKTEKKISLGLIRVANIKHAIRLAQFLSDHLPEAKIACYHANDWLISRFYKEQRLDQLLTRHKDGKKRKTGNEQIEQDDEIIDLIQKSNSLNIPFIVIATPVEEVGRDHDFDWAIIDASSVQSIVQTAGRVNRHRLEKVQQPNIMIPQWNYRYCEQRDIEKLKQQSKQRRPVFVYPGYEGYGSSVTSTYSSQDLKELLPWDHQSQLVINARLRFDQVNCLFAKHDDQQIGNFCENYFNDQGEQLFSRSDVDASIMTENIYNLTPLRERNYQETYMFEWTNSLIVKKQVYGFDEKATKTLKYPKYGLVWDLVKFEEIPAKPQAWLALDPQQMKDYCYEYQIAYEQGCRISLTPYNRDEVPTWSYDYGFGVMQK
>NZ_CP041587.1|WP_000143473.1|990831_991227_+|hypothetical-protein
MTFLSCKEIDKLMTELGYTQTNTRKYAHEFKLKNGQYVYVKQLKDNQKRKKQPSRLMIHPSFRKFKEDLIKLEKVEFSFEEKGNMNTAFARFPQSNESECAKNPTRHGIGVNFKDKLALINFLKFIESSKY
>NZ_CP041587.1|WP_000837437.1|991423_991951_-|hypothetical-protein
MKSKLCIILLSLLTVACSQVRPQKHGITEADITQAYEASLYAQFNQLYYTKSLYKAAYNEVNKVTQTNDQLLSYATFLMYAVNTTYDSLDIQLNDDLDLMASGQKSKMSIDALDSLCVSNKYIEKYIKLKEKSGSEISAKAKELSKEALILQPKIEEIIMKTDSPLNDIECKKLI
>NZ_CP041587.1|WP_000203573.1|992256_992697_+|PAAR-domain-containing-protein
MTSPIFLQDLPIEQLEKLSENDIQKISNTEKLYWNNKPHVIYYVAVHGAKTQNDGLVNASSTNTKIKGLFIARVGDEVIYGDGTTSKIISGAGTACVVEGLPVALVGSRLENGDEIIDSPNTSVAIRIYKDQPKPKNFLVMTNFKE
>NZ_CP041587.1|WP_001051771.1|992700_993240_+|PAAR-domain-containing-protein
MAKGFAIHNAITDHGGVIPSTQAISSQMGNLFVRAGDGHMCPKCRCWSVVIKSHDHVIFDGKPVAYVGDKLSCGATIQPQQSHVVGDSGSPYSGKDNQKDSSINKKFDEQVQIEINNSFSELFAGLGYRLKVGEKVIEGTFDSYGKTERFETQNAAQVSEFEIFFKDKIKYFSDLEGEE
>NZ_CP041587.1|WP_000506972.1|993241_993874_+|hypothetical-protein
MGFSILENNLDKIITNNKKDSLAKLKLRTRTLTAGEIELCQLVYKNTIDYSKVTIIEGSFFPFDLQNEDTFVTPNGHIFIPTKHFLLDYSKEDISYKHLFIHEMGHVWQHQRKNRVLISAGIAQACTVFKDPYKYNIHNADTVADYVRYKSNKKFVNYNLESQAEIFADYWALKTNNLQAISRKNLINIDRNNLQATIAVYEAKIREVIK
>NZ_CP041587.1|WP_000660074.1|993880_994339_+|hypothetical-protein
MKEKKIVGYTLIVLFLISIIFMLNKNKNEEFKISLIHDSLVINFPNKIFVKNYAIKDFEKDNFSNSNGPTEYRKVLENSYYKEVDHIKIKNISKYNIIPDHAYFYVMTQENDHDLNARLKSLGFCIKGNSVLLQSSREKDSDFIEKCHVKDK
>NZ_CP041587.1|WP_000772281.1|994388_994874_+|hypothetical-protein
MKLLYLLLLISSTVSASPYATLYVKIKDNDVCVFTKGGYDKAYENQTLIYMGKVDGINAFHDSYSKTYLNLKMPITEENCIKINSLEFKENFPYSITLEVDREYNQRICVKQNSEGKTVLLEAKADLEKGTYCGTNQYNYSSNSLLAKLKNLYYWVVDLLI
>NZ_CP041587.1|WP_002065346.1|994962_995391_+|hypothetical-protein
MDIINSIKLIFISSLILLSSGCSILKREPQLIGSIESKNLLFSFKNKDTVILAYQVNSLEEFEKDGLTYKNILKYQYYEGFKKISIEDYKKKNILDNHAYYLIVTKEGTVLQTFGFCIKDKTVYLQEDKKDDQGFTNKCHNL
>NZ_CP041587.1|WP_000675263.1|995652_995937_-|hypothetical-protein
MKFYKTILVLGLVVGDYSVSGCDIHTQQEFEKICLSGGHTQASCDCIYQRLEQVYSPQLMQRLEHVSLQSPALPQDFAPTFFSVMRRCDKNDMG

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Crispr_ID: NZ_CP041587_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041587_2

1540842-1541725

Orphan

Consensus_repeat	Method
NNNGANGACGATGAAGATGATGATCGNGGTCGTTCAGGTGGNCGAGG	CRT

13 spacers

The CRISPR arrays of NZ_CP041587_2

>merge|NZ_CP041587|2|1540842-1541725|CRT
GACGACGATGATGACGATCGCGGTAGCCGCTCAGGTGGTCGAGGCCGAAGCCGTTACGACGACGATGATGACGATGATCGCGGTCGCTCAGGCGGTCGTGGCCGCGGTCGCGGTCGTGATGATGACGACGAAGATGATGATCGCGGTCGCTCAGGTGGCCGAGGCCGTGGCCGCAGTCGTGATGACGACGATGAAGATGATGATCGCGGTCGTTCAGGTGGCCGAGGTCGTGGTCGCAGCCGCCGTGATGATGACGATGAAGATGATGATCGCGGTCGTTCAGGCGGTCGAGGTCGTGGCCGCAGCCGCCGTGATGACGACGATGAAGATGATGATCGCGGTCGCTCAGGTGGTCGAGGTCGTGGTCGCAGCCGCCGTGATGACGACGATGAAGATGATGATCGTGGCCGTTCAGGTGGCCGAGGTCGTGGTCGCAGCCGTCGTGACGATGAAGATGATGACCGTGGTCGTTCAGGTGGCCGAGGCCGTGGCCGCAGTCGTTATGATGATGACGATGAAGATGATGATCGCGGTCGTTCAGGTGGCCGAGGTCGTGGTCGCAGCCGTCGTGACGATGATGACGAAGATGATGATCGTGGTCGTTCAGGTGGCCGAGGCCGTGGCCGCAGTCGTTATGATGACGACGATGAAGATGATGATCGTGGCCGTTCAGGTGGCCGAGGTCGTGGCCGCAGCCGTCGTGATGATGATGACGAAGATGATGACCGTGGTCGTTCAGGTGGTCGAGGCCGTGGCCGCAGTCGTTATGATGATGACGATGAAGATGATGATCGTGGTCGTTCAGGTGGCCGAGGCCGTGGTCGCAGCCGTCGTGATGACGATGACGACGATGATGACCGCCGTGGCCGTTCAGATGGTCGTGG

>NZ_CP041587|2|2|1540842-1541725|CRT
GACGACGATGATGACGATCGCGGTAGCCGCTCAGGTGGTCG	AGGCCGAAGCCGTTACGAC
GACGATGATGACGATGATCGCGGTCGCTCAGGCGGTCGTGG	CCGCGGTCGCGGTCGTGATGAT
GACGACGAAGATGATGATCGCGGTCGCTCAGGTGGCCGAGG	CCGTGGCCGCAGTCGTGATGAC
GACGATGAAGATGATGATCGCGGTCGTTCAGGTGGCCGAGG	TCGTGGTCGCAGCCGCCGTGATGAT
GACGATGAAGATGATGATCGCGGTCGTTCAGGCGGTCGAGG	TCGTGGCCGCAGCCGCCGTGATGAC
GACGATGAAGATGATGATCGCGGTCGCTCAGGTGGTCGAGG	TCGTGGTCGCAGCCGCCGTGATGAC
GACGATGAAGATGATGATCGTGGCCGTTCAGGTGGCCGAGG	TCGTGGTCGCAGCCGTCGT
GACGATGAAGATGATGACCGTGGTCGTTCAGGTGGCCGAGG	CCGTGGCCGCAGTCGTTATGATGAT
GACGATGAAGATGATGATCGCGGTCGTTCAGGTGGCCGAGG	TCGTGGTCGCAGCCGTCGT
GACGATGATGACGAAGATGATGATCGTGGTCGTTCAGGTGG	CCGAGGCCGTGGCCGCAGTCGTTATGATGAC
GACGATGAAGATGATGATCGTGGCCGTTCAGGTGGCCGAGG	TCGTGGCCGCAGCCGTCGTGATGAT
GATGACGAAGATGATGACCGTGGTCGTTCAGGTGGTCGAGG	CCGTGGCCGCAGTCGTTATGATGAT
GACGATGAAGATGATGATCGTGGTCGTTCAGGTGGCCGAGG	CCGTGGTCGCAGCCGTCGTGATGACGAT
GACGACGATGATGACCGCCGTGGCCGTTCAGATGGTCGTGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041587.1\|WP_001176225.1\|1539674_1540076_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041587.1\|WP_000432004.1\|1538655_1539534_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187613
NZ_CP041587.1\|WP_000251637.1\|1532036_1532180_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041587.1\|WP_001136759.1\|1532449_1532878_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041587.1\|WP_000179386.1\|1551714_1552191_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380097
NZ_CP041587.1\|WP_000482091.1\|1534197_1534677_-\|CinA-family-protein	unknown	unknown	gnl\|CDD\|224463
NZ_CP041587.1\|WP_000107956.1\|1550598_1551669_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223999
NZ_CP041587.1\|WP_086221423.1\|1544319_1545966_-\|allantoin-permease	unknown	unknown	gnl\|CDD\|224374
NZ_CP041587.1\|WP_000498477.1\|1532965_1533187_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041587.1\|WP_002065124.1\|1534992_1536402_+\|iron-containing-redox-enzyme-family-protein	unknown	unknown	gnl\|CDD\|379634
NZ_CP041587.1\|WP_000107130.1\|1549592_1550552_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|381147
NZ_CP041587.1\|WP_000376217.1\|1543808_1544264_+\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NZ_CP041587.1\|WP_000885226.1\|1543040_1543652_-\|LysE-family-translocator	unknown	unknown	gnl\|CDD\|224199
NZ_CP041587.1\|WP_001124839.1\|1542356_1542968_+\|translesion-error-prone-DNA-polymerase-V-autoproteolytic-subunit	unknown	unknown	gnl\|CDD\|182350
NZ_CP041587.1\|WP_000108363.1\|1533694_1533913_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237171
NZ_CP041587.1\|WP_086223107.1\|1536456_1538601_+\|catalase-HPII	unknown	unknown	gnl\|CDD\|236886
NZ_CP041587.1\|WP_000132045.1\|1533271_1533589_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041587.1\|WP_000608482.1\|1552476_1553367_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176163
NZ_CP041587.1\|WP_000795915.1\|1541837_1542074_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041587.1\|WP_025464524.1\|1546131_1549596_+\|response-regulator	unknown	unknown	gnl\|CDD\|223715

Protein	Function_ID	Function_description	E-value
NZ_CP041587.1\|WP_000432004.1\|1538655_1539534_-\|SDR-family-oxidoreductase	gnl\|CDD\|187613	cd05355, SDR_c1, classical (c) SDR, subgroup 1. These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	9.50752e-159
NZ_CP041587.1\|WP_086221423.1\|1544319_1545966_-\|allantoin-permease	gnl\|CDD\|224374	COG1457, CodB, Purine-cytosine permease and related proteins [Nucleotide transport and metabolism].	5.95642e-23
NZ_CP041587.1\|WP_000179386.1\|1551714_1552191_-\|hypothetical-protein	gnl\|CDD\|380097	pfam18050, Cyclophil_like2, Cyclophilin-like family. This entry represents a family of cyclophilin-like proteins found in a range of bacterial species.	1.70187e-35
NZ_CP041587.1\|WP_000482091.1\|1534197_1534677_-\|CinA-family-protein	gnl\|CDD\|224463	COG1546, CinA, Uncharacterized protein (competence- and mitomycin-induced) [General function prediction only].	5.88094e-21
NZ_CP041587.1\|WP_000608482.1\|1552476_1553367_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176163	cd08474, PBP2_CrgA_like_5, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 5. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	5.24806e-109
NZ_CP041587.1\|WP_002065124.1\|1534992_1536402_+\|iron-containing-redox-enzyme-family-protein	gnl\|CDD\|379634	pfam14518, Haem_oxygenas_2, Iron-containing redox enzyme. The CADD, Chlamydia protein associating with death domains, crystal structure reveals a dimer of seven-helical bundles. Each bundle contains a di-iron centre adjacent to an internal cavity that forms an active site similar to that of methane mono-oxygenase hydrolase.	1.27864e-18
NZ_CP041587.1\|WP_000107130.1\|1549592_1550552_+\|response-regulator-transcription-factor	gnl\|CDD\|381147	cd19920, REC_PA4781-like, phosphoacceptor receiver (REC) domain of cyclic di-GMP phosphodiesterase PA4781 and similar domains. Pseudomonas aeruginosa cyclic di-GMP phosphodiesterase PA4781 contains an N-terminal REC domain and a C-terminal catalytic HD-GYP domain, characteristics of RpfG family response regulators. PA4781 is involved in cyclic di-3',5'-GMP (c-di-GMP) hydrolysis/degradation in a two-step reaction via the linear intermediate pGpG to produce GMP. Its unphosphorylated REC domain prevents accessibility of c-di-GMP to the active site. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	7.83903e-55
NZ_CP041587.1\|WP_000376217.1\|1543808_1544264_+\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	4.85592e-39
NZ_CP041587.1\|WP_000885226.1\|1543040_1543652_-\|LysE-family-translocator	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	1.95453e-22
NZ_CP041587.1\|WP_001124839.1\|1542356_1542968_+\|translesion-error-prone-DNA-polymerase-V-autoproteolytic-subunit	gnl\|CDD\|182350	PRK10276, PRK10276, translesion error-prone DNA polymerase V autoproteolytic subunit.	6.03039e-39
NZ_CP041587.1\|WP_086223107.1\|1536456_1538601_+\|catalase-HPII	gnl\|CDD\|236886	PRK11249, katE, hydroperoxidase II; Provisional.	0
NZ_CP041587.1\|WP_000107956.1\|1550598_1551669_-\|alpha/beta-hydrolase	gnl\|CDD\|223999	COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General function prediction only].	3.06302e-46
NZ_CP041587.1\|WP_000108363.1\|1533694_1533913_-\|hypothetical-protein	gnl\|CDD\|237171	PRK12678, PRK12678, transcription termination factor Rho; Provisional.	2.82741e-06
NZ_CP041587.1\|WP_025464524.1\|1546131_1549596_+\|response-regulator	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.32799e-57

>NZ_CP041587.1|WP_001176225.1|1539674_1540076_-|hypothetical-protein
MQLKNQQSALQYIHISIPEILLGHIKSKNSWQDYDKEWSYRLDPPHASHPFQRDLYIIKSKNIEHEDIKILLDNMAVKNNKNSENIDGAKEIIKKILDLSNNIPIENWLKDTGNRSIIESMIDKNKIKLIDII
>NZ_CP041587.1|WP_000432004.1|1538655_1539534_-|SDR-family-oxidoreductase
MENSTNQYPTSAPAQVQSHQPGDQEKMHPEPEIIKSTHKGSDKLKDKVAVISGGDSGIGRSVAVLFAREGADIAILYLEEDQDAEITKQLVEREGQHCLLLKGDISDPDVAKLDIDKVLQHYGKINILVNNAGVQYQQKEIESISNEQLEKTFKTNIFPMFYLTKEAIPYMEEGDSIINTTSITSYQGHDELIDYASTKGAITTFTRSLSNNLMKQKKGIRVNGVAPGPIWTPLIPSSFDAETVKEFGKDTPMGRMGQPSEVAPAYLFLASDDASYITGQVIHVNGGQIVNG
>NZ_CP041587.1|WP_086223107.1|1536456_1538601_+|catalase-HPII
MDMNDNTKSTNKTSEMAGADAANKANTTQKTEQLDTVRDDATNEALTTNQGVKIADNQNSLRAGIRGSTLLEDFILREKITHFDHERIPERIVHARGVGAHGYFQAYEGNERLTKAGFLTDPTIQTPIFVRFSTVQGPRGSADTVRDIRGFAIKFYTQEGNFDLVGNNAPVFFVQDGIKFPDFVHAVKPEPDTEIPTGATAHDTFWDFVSLVPESAHAVIWAMSDRAIPRNLRSIQGFGVHTFRLINAEGKSHFVKFHWTPKQGLSALVWDEAQKLAGKDPDFHRRDLYEAIENGVYPEWELGVQIVEEEDEMNFDFDLLDPTKIIPEELVPVTPIGRFVLNRNVDNFFAETEQVAFCPGHIVPGIDFTNDPLLQARLFSYTDTQLSRLGGPNFHQIPINKPVCPFHNNQRDGIHQHTIHKGQASYQPNSIDNDWPAETPPAASNGGFESYPEQISGHKLRQRSETFSDHFSQPRLYYKSLAPHEQKHVVDAYTFELSKVQRKHIRERQVQQILANIDLDLARQVGANLGIEVPDLTLDYKKTAVEKSAKLSFLAFPPQDIQGRKVAVLIHNLVKSDALEAMKNWAIKEGVTLHLLAPSLAPVKDHQDSIITADGMQMAEPSIAYDAVIIPDGDNLNAVMQDGVTRHYLLEAYKHLKPIAFLGNKSDLLEPLGLVPDEGTLVGDEFQPIAEKFKNLIMAHRIWSREPIAAHIPA
>NZ_CP041587.1|WP_002065124.1|1534992_1536402_+|iron-containing-redox-enzyme-family-protein
MPVVVKKRLLDLLQDNQQNYYELFVFFLDPDVSSFEKEKKARDFLAKEIDKLKMKEIDFPSDINLIKAWCEKDNKKNCQEFQAYLNRRQSGQDREYFKNVAQAFEFLIKVSPTKKVDGAWLYSSVHYWNDPIFHELIITYLEELGLGEPKANHVCIYDDLLRSLGLDSFDLLLEDEYYHQAVVQLALGYAPPEFIPEIVGFNLGYEQLPLHLLISNYELAELGIDSKYFNLHITIDNIDNGHAYKAIKVIEDIYNKYRDKELFLTKLKRGFALNNHGVSSSNIIKNLNTEDFVHRIFKRKALVGQLIHNETRQFGCKTINQWLSNPDDIAGLITHLTEHKWIKFNTDPEQSVFWRMINEENGKMFGVFNPVERQIIHDWIAGSDHSSSFLAYSRELKNSQRIQDYLFSYISDGELDALQERVQQSSDLAIKICKLTPFLAPDSHHKSIGLWSTRKYVELLFPYLGTFKN
>NZ_CP041587.1|WP_000482091.1|1534197_1534677_-|CinA-family-protein
MFNKCCELLAKEKIKIAFFESASAGYLAYRFSLSPYSGDILIGSLVSYDLRVKENTLHISEELIEKYTAESMQVTVEMINKGKELLHADLYVACTGLLKKGGSETPEKPVGTFFYSIYYKNNFYNFRRVLRGPAFLKLRKLIYYVTQDIKLIILEDKRR
>NZ_CP041587.1|WP_000108363.1|1533694_1533913_-|hypothetical-protein
MSTTNNQANQRNNQQQQQQNDNRNQQQNGNQQQNDQQQQNNQQQQQNDNRGQQQGSNQKDSGQQNSNNNQQR
>NZ_CP041587.1|WP_000132045.1|1533271_1533589_-|hypothetical-protein
MTDQNTDHAQLVAGDHNYSDSRWRESYLTRPYYQEAQLTTPDLDYDRDFSAAYELGHRARSESKEGTQFEDMEGSLQQKWEELKAESRLKWEHAKQAIKDAWDDM
>NZ_CP041587.1|WP_000498477.1|1532965_1533187_+|hypothetical-protein
MFVYFTDGTCINDSEIYGVKAKYEQNKYVVEVTIKPTHVLATTPSVQFKKEVFDDPNLANQYLSHNFNMPPFF
>NZ_CP041587.1|WP_001136759.1|1532449_1532878_+|hypothetical-protein
MPQYLKIAEKIYQNVKEKKGFTDDPMEDLNNLMIELRQEIKGTKLKLLYNYIDFAEILIKPLQESKIKLDLSLIPKSKNTQEFVLWLAGFIERITTGGQEKLPPIRAKITLPAYAYEETYPSQKKPVNNGEEIIEYFKKNQS
>NZ_CP041587.1|WP_000251637.1|1532036_1532180_+|hypothetical-protein
MVRIFCAVSMVLAIAMGMSACQDRNSRNDGMHEASDPATSHDMNKNS
>NZ_CP041587.1|WP_000795915.1|1541837_1542074_-|hypothetical-protein
MKNQRDAVLGYADEQHAYYIRLIENDAVLGESYGIFCENPESEAAESIMTTLFLKKSFWLNGSEFTDIVKGLHPLTHS
>NZ_CP041587.1|WP_001124839.1|1542356_1542968_+|translesion-error-prone-DNA-polymerase-V-autoproteolytic-subunit
MPKKKEFEHGGARENAGRKAQFNEPTKVIRVPESQVNFIKNWLLNNVKTDNQTDFTSKLKIQQVHPNNDKIYHIPLATERVAAGFPSPAQDDIEQALDLNEYLIRNENATFIVKANSLSMLDAGIDIDDPLIVDRSIPAKSGDIVIALIDNDFTVKRLMIDTQFQPPKVWLKAENPDYQNIYIEEGQELVIWGVVTYNLKRMR
>NZ_CP041587.1|WP_000885226.1|1543040_1543652_-|LysE-family-translocator
MAFNIFIAFWSVSILFIITPGADWAYAISAGIKGKVVVPAVAGMLFGHFITILLVAAGVGLLVANNPTALMILTVAGSAYLLWMGINLLITPPTPNQSGSEKAQSWLSWATKGVYVSGLNPKVFLLFLALLPQFIDTTASWSVTTQILAFGVVHIISCAIIYLMVGYGSEAILKTRPQAAQLVGRFSGGLMVVIATCLLIGQI
>NZ_CP041587.1|WP_000376217.1|1543808_1544264_+|Lrp/AsnC-family-transcriptional-regulator
MDRTDKKILAELQLNGRLSITELAEKVGLSISPCHRRVKALEESGAIKGYRAELDPNLVGFEFSAIVFITLKEGDKQAVEKFENAVIVIPQIIQAQRLFGEPDYLLHVVAKDLPAFQRLYDEKLSAIPSVQRLISTIVMKDVVPERLFPIG
>NZ_CP041587.1|WP_086221423.1|1544319_1545966_-|allantoin-permease
MTENDWEIDVMSVSEHPNLDTVQGTDSQKAVNETLEDYTLRYAPHSFRRWSPKVVAITALGGIAYLADFSIGASIGMSYGTTNAVFSILFAAIIIFLTGIPLAYYAARYNIDLDLITRGAGFGYIGSVLTSIIFASFTFIFFALEGSIMAQGLLLGLGIPLWAGYLISTVMVIPLVIYGMKALSKLQVWTTPLWLVLMIGPVAYLIYQEPTLVSQFATFTGHEGFAPVDMAAIMLGAGICLSLIMQIGEQIDYLRFMPAKTKENSKAWWAAVISAGPGWVILGAIKQIIGAFLGFYLLTKIPGVNSTEPVQQFNAAFHDMLPGWAALTLAVILVVISQIKINVTNAYSGSLAWTSAYTRISKHYPGRIVFVMVNLAIALALMEGNMFAVLGKILGFYSNFAIAWVVVVATDISINKYVLKLSPKEPEYRRDMLYNVNPVGMVAFLVSAGLSIAAFFGLLGSFLAPYSPIIALVLAFVLTPIMGLLTKGKYYIKSHDDGVKEPRYDAEGTPVATVYHCRVCEQGYERPDIMFSHKHNGTICSLCKTLDA
>NZ_CP041587.1|WP_025464524.1|1546131_1549596_+|response-regulator
MSVMPDSSRPQQAPQRVIKTRREYNIWVADESIEDYALRYAPTSVRKWSPWTVTNTAISTVSFLAMEAIGATMLWQYGFSNAVWAAIVVCTIIFLTSWPISYYAAKYNVDVDLLTRGAGFGYIGSTITSLIYASFTFILLAFEAAIMAMALELALGIPQVIGYLISALVILPLVVKGIGFINKVQAITQPIWLLLLLLPWFFVLWKQPQILSSSLHFVGAVSNSTDFNLYYFGAACTLIFSFVIQIGEQADYLRFLPQKEKNRTAWRFAVFLGGPSWIIFGFLKVLMGMLLMVLAFQLFIPVSELDNPTYLYWVAYQQFIPNPQLALILTLALVCLAQIKINMTNAYAGSLAWSNFFARLTHSHPGRIVWLLFNVFIAIVLMEMGISHAVERILGLYSNIALAWIGAVVADLIICKPLGLSPKGIEFRRAYLYDINPVGVGALLIASVLSMLSYLGFFGLMAKGLASFVALGTALLCVPVIAYLTKGKYYIARQPEKIQATSVANCVVCERDYELADMAGCPAYNGTICSLCCSLEARCHDLCKPDARWSVQLKKAIWRYLPERWASRLNSRVSLYLLLTLGLSIVLAVSLSLVYIQEKTYLETINAAAVPQLFTLFVKIYTILFLLMSVAAWWLVLNDESRRNAEIETHQQTALLIDEIAAHEVTSKDLQDARIAAERANDAKSRYVIGISHELRTPLNSILGYSQLLQKQEQLSEQGKMALGVISRSGQHLTSLIDGLLDLARIETGKISLNVVDVHFPNFIEQIIQMFQPQFEQKNLQFVYEIGDNLPHYVRTDKKRLEQVLINLLGNALKFTTSGTITLKVEYRFQTAYFEIRDTGCGIAEADLERIFNPFERGSNVVQGGFTGTGLGLPIVKLLVDLLGGQLSVTSQLNQGSQFKIKFYLPSKEVVHPISNVYSNQITGYQGERKRILVADNEAVDRGLVANFLKPLGFMIEEAESGIDCLRRVPIFQPNLILMDLNMPLMGGWETARLLRQNNITNVPILIISANAGEREVNPQDAVLSEDFMLKPIDLNLLLSKIGDKLGLVWIDSKSDANLENNEVQALDVKVFKQEQPTVHTSITQPENNDLLDLPQSLQHLNDLIGQGYIRGIQQTLTQCRQNFPEHKELWEQLEQAIQKFDLKHAQRLIQDKS
>NZ_CP041587.1|WP_000107130.1|1549592_1550552_+|response-regulator-transcription-factor
MSTQHVSFQQASPNEQAVILIVDDVPENLGLLHESLDQAGYRVLVTTDGLSAIEIAHRCLPDMILLDGNMPHMDGFESCIQLKASPITQFIPVIFMTGLSETEHIVRGFQVGGVDYVTKPLNIEEVLARVKTHLAHAKLLQQQKQVIDATETAILALDVHGKIVWKTQKASDLLNQYLPELEGFEAGLKAWFSDLEHEKDPKKLTSCSYSTPSQQLQLLLLTPWETEPSVAKNYLIQIKTTTPALEMADILKYCPQLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHIFEKLCVENRTAAVAHINSLVQEFH
>NZ_CP041587.1|WP_000107956.1|1550598_1551669_-|alpha/beta-hydrolase
MSTSPLFKKLKTHTAAAICAATIGLFSSTSAMAADMSNGANNFYQSQQVTIQKVTFKNQYNMDIVGNLVIPKNLNKKTKASAIVIGHPMGAVKEQSSMLYAQKLAEQGFVTLAIDQSFWGESAGQPRNVVAPDIYAEAFSAAVDYLGTQSFIDPNNIGVLGICGSGSFVISAAKIDPRMKAIATVSMYDMGAANRNGLRHSQTLEQRKQIIAEAAAQRYVEFKGGETKYTSGTTHELTADTHPIQREFYDFYRTPRGEYTPKGSSRELTTHPTLTSNVKFLNFYPFNDIETISPRPMLFITGDQAHSKEFSEEAYKLAGQPKELYYVKGAGHVDLYDRVDLIPFNKLTSFFKQNLK
>NZ_CP041587.1|WP_000179386.1|1551714_1552191_-|hypothetical-protein
MASYKFFKGLVSLCALFSVTSASYAIKPQGKNQQRGSMMKIRIDIDGTQQPLFATLAMSPTVEDFAKQLPLTLILKDYDSTEKIADLPTKLTTQNAPHGYAGKAGDLTYYAPWGNLAFFYKDSHVGYANGLIFLGKLDAIPQAFKQKQQIKISISQIK
>NZ_CP041587.1|WP_000608482.1|1552476_1553367_+|LysR-family-transcriptional-regulator
MINKENYNDLYAFLMVAREGSFTKAAGKMGISQSALSHTIRGLEERLGMLLLTRTTRSVSPTAAGERLKQTISASFDQIDNELSLLTSFRDQPAGTVRINASSHAIREVLIPKLKKIAGEYPDVQVELTANSGMVDIVAERFDAGVRFGSRVADGMIAVRISPDVKMVVIATQAYFEKYGIPQSPKDLVSHQCIGFRLTTQGSVYAWEFVKDGQESKIKIQGQWIFNESYDIVEAVRAGFGLAYIPEDLIREDIKEGNLIQVLEEYSIQFPGYHLYYPHRRQLSPALRLVIDVLRE

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Crispr_ID: NZ_CP041587_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041587_3

2350356-2350444

Orphan

Consensus_repeat	Method
TCTTGCGAAAAAGTAAGAGATAATCAATCTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041587_3

>merge|NZ_CP041587|3|2350356-2350444|CRISPRCasFinder
TCTTGCGAAAAAGTAAGAGATAATCAATCTCAACTATCTACTCACAACATGTTGTTCGTCTTGCGAAAAAGTAAGAGATAATCAATCTC

>NZ_CP041587|3|2|2350356-2350444|CRISPRCasFinder
TCTTGCGAAAAAGTAAGAGATAATCAATCTC	AACTATCTACTCACAACATGTTGTTCG
TCTTGCGAAAAAGTAAGAGATAATCAATCTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041587.1\|WP_000122143.1\|2346861_2348247_+\|ethanolamine-ammonia-lyase-subunit-EutB	unknown	unknown	gnl\|CDD\|237897
NZ_CP041587.1\|WP_000494375.1\|2342341_2343532_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|183114
NZ_CP041587.1\|WP_001983672.1\|2337663_2338029_-\|5-carboxymethyl-2-hydroxymuconate-Delta-isomerase	unknown	unknown	gnl\|CDD\|238324
NZ_CP041587.1\|WP_000462395.1\|2353592_2353823_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041587.1\|WP_000242908.1\|2354654_2355512_-\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|274527
NZ_CP041587.1\|WP_000874704.1\|2340009_2341182_+\|iron-containing-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|341467
NZ_CP041587.1\|WP_085920724.1\|2359762_2360641_+\|pseudouridylate-synthase	unknown	unknown	gnl\|CDD\|211332
NZ_CP041587.1\|WP_000808297.1\|2338066_2339779_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|350795
NZ_CP041587.1\|WP_000070779.1\|2356243_2357188_-\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	unknown	unknown	gnl\|CDD\|234626
NZ_CP041587.1\|WP_000009660.1\|2352340_2352850_+\|peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|238901
NZ_CP041587.1\|WP_031947145.1\|2359139_2359613_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	unknown	unknown	gnl\|CDD\|376771
NZ_CP041587.1\|WP_001269055.1\|2343675_2345187_+\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143434
NZ_CP041587.1\|WP_000774031.1\|2348257_2349073_+\|ethanolamine-ammonia-lyase-subunit-EutC	unknown	unknown	gnl\|CDD\|235482
NZ_CP041587.1\|WP_001098144.1\|2341376_2342345_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225176
NZ_CP041587.1\|WP_001983665.1\|2355643_2356162_-\|RNA-chaperone-Hfq	unknown	unknown	gnl\|CDD\|179001
NZ_CP041587.1\|WP_000129008.1\|2357194_2359147_-\|DNA-mismatch-repair-endonuclease-MutL	unknown	unknown	gnl\|CDD\|234630
NZ_CP041587.1\|WP_001098470.1\|2349236_2349959_+\|glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|235919
NZ_CP041587.1\|WP_001075435.1\|2345408_2346845_+\|ethanolamine-permease	unknown	unknown	gnl\|CDD\|129986
NZ_CP041587.1\|WP_000365033.1\|2353962_2354616_+\|oxygen-insensitive-NAD(P)H-nitroreductase	unknown	unknown	gnl\|CDD\|182929
NZ_CP041587.1\|WP_111916255.1\|2352865_2353585_+\|UDP-2,3-diacylglucosamine-diphosphatase	unknown	unknown	gnl\|CDD\|235420

Protein	Function_ID	Function_description	E-value
NZ_CP041587.1\|WP_000122143.1\|2346861_2348247_+\|ethanolamine-ammonia-lyase-subunit-EutB	gnl\|CDD\|237897	PRK15067, PRK15067, ethanolamine ammonia-lyase subunit EutB.	0
NZ_CP041587.1\|WP_000494375.1\|2342341_2343532_-\|transcriptional-regulator	gnl\|CDD\|183114	PRK11388, PRK11388, DNA-binding transcriptional regulator DhaR; Provisional.	7.18102e-10
NZ_CP041587.1\|WP_001983672.1\|2337663_2338029_-\|5-carboxymethyl-2-hydroxymuconate-Delta-isomerase	gnl\|CDD\|238324	cd00580, CHMI, 5-carboxymethyl-2-hydroxymuconate isomerase (CHMI) is a trimeric enzyme catalyzing the isomerization of the unsaturated ketone 5-(carboxymethyl)-2-hydroxymuconate to 5-(carboxymethyl)-2-oxo-3-hexene-1,6-dionate. This is one step in the homoprotocatechuate pathway, one of the microbial meta-fission pathways that degrade aromatic carbon sources to citric acid cycle intermediates. Despite the structural similarity of CHMI with 4-oxalocrotonate tautomerase (4-OT) and macrophage migration inhibitory factor (MIF), there is no significant sequence similarity among these protein families, and therefore, they are not combined in one hierarchy.	7.85994e-36
NZ_CP041587.1\|WP_000242908.1\|2354654_2355512_-\|EamA-family-transporter	gnl\|CDD\|274527	TIGR03340, phn_DUF6, phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.	7.88569e-07
NZ_CP041587.1\|WP_000874704.1\|2340009_2341182_+\|iron-containing-alcohol-dehydrogenase	gnl\|CDD\|341467	cd08188, PDDH, 1,3-Propanediol (1,3-PD) dehydrogenase. This family includes 1,3-propanediol (1,3-PD) dehydrogenase, a key enzyme in the microbial production of 1,3-PD that has been previously characterized as the product of dhaT gene in Klebsiella pneumoniae. 1,3-PD dehydrogenase is a member of the family III metal-dependent polyol dehydrogenases, which are shown to require a divalent metal ion for catalysis. However, some members of this family showed a dependence on Fe(2+) or Zn(2+) for activity.	0
NZ_CP041587.1\|WP_085920724.1\|2359762_2360641_+\|pseudouridylate-synthase	gnl\|CDD\|211332	cd02558, PSRA_1, Pseudouridine synthase, a subgroup of the RluA family. This group is comprised of bacterial proteins assigned to the RluA family of pseudouridine synthases. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. The RluA family is comprised of proteins related to Escherichia coli RluA.	3.12241e-123
NZ_CP041587.1\|WP_000808297.1\|2338066_2339779_-\|AAA-family-ATPase	gnl\|CDD\|350795	cd18037, DEXSc_Pif1_like, DEAD-box helicase domain of Pif1. Pif1 and other members of this family are RecD-like helicases involved in maintaining genome stability through unwinding double-stranded DNAs (dsDNAs), DNA/RNA hybrids, and G quadruplex (G4) structures. The members of Pif1 helicase subfamily studied so far all appear to contribute to telomere maintenance. Pif1 is a member of the DEAD-like helicases superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	1.56258e-79
NZ_CP041587.1\|WP_000070779.1\|2356243_2357188_-\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	gnl\|CDD\|234626	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed.	7.71297e-140
NZ_CP041587.1\|WP_000009660.1\|2352340_2352850_+\|peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|238901	cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.	1.99356e-78
NZ_CP041587.1\|WP_031947145.1\|2359139_2359613_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	gnl\|CDD\|376771	pfam02367, TsaE, Threonylcarbamoyl adenosine biosynthesis protein TsaE. This family of proteins is involved in the synthesis of threonylcarbamoyl adenosine (t(6)A).	2.79654e-55
NZ_CP041587.1\|WP_001269055.1\|2343675_2345187_+\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143434	cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like. Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane. These proteins apparently require RpoN factors for expression.	0
NZ_CP041587.1\|WP_000774031.1\|2348257_2349073_+\|ethanolamine-ammonia-lyase-subunit-EutC	gnl\|CDD\|235482	PRK05465, PRK05465, ethanolamine ammonia-lyase subunit EutC.	1.02298e-114
NZ_CP041587.1\|WP_001098144.1\|2341376_2342345_+\|alpha/beta-hydrolase	gnl\|CDD\|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	1.23522e-33
NZ_CP041587.1\|WP_001983665.1\|2355643_2356162_-\|RNA-chaperone-Hfq	gnl\|CDD\|179001	PRK00395, hfq, RNA-binding protein Hfq; Provisional.	8.16909e-47
NZ_CP041587.1\|WP_000129008.1\|2357194_2359147_-\|DNA-mismatch-repair-endonuclease-MutL	gnl\|CDD\|234630	PRK00095, mutL, DNA mismatch repair endonuclease MutL.	0
NZ_CP041587.1\|WP_001098470.1\|2349236_2349959_+\|glutamine-amidotransferase	gnl\|CDD\|235919	PRK07053, PRK07053, glutamine amidotransferase; Provisional.	8.11186e-142
NZ_CP041587.1\|WP_001075435.1\|2345408_2346845_+\|ethanolamine-permease	gnl\|CDD\|129986	TIGR00908, putative_ethanolamine_permease, ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily. [Transport and binding proteins, Amino acids, peptides and amines].	3.43375e-170
NZ_CP041587.1\|WP_000365033.1\|2353962_2354616_+\|oxygen-insensitive-NAD(P)H-nitroreductase	gnl\|CDD\|182929	PRK11053, PRK11053, oxygen-insensitive NAD(P)H nitroreductase.	1.61275e-144
NZ_CP041587.1\|WP_111916255.1\|2352865_2353585_+\|UDP-2,3-diacylglucosamine-diphosphatase	gnl\|CDD\|235420	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional.	4.26684e-117

>NZ_CP041587.1|WP_001098470.1|2349236_2349959_+|glutamine-amidotransferase
MNTTNAFPKTIYAIQHLAFEDLGSLEDVFYQLGFRVRYFEAGVDDLTPAFTHDGLTIILGGPIGVYETEDYPFLKDEIALLKQRLAADKPTLGICLGAQLIAHALGAKVYAGHQKEIGWGALSLSLRPNQVLSPLLNNVHVLHWHGDTFDLPENAVLLASSEIYTNQAFEVGNNILALQFHIETTEENFEKWLIGHTCELRHAGVSIPKLREQNIEYAPALEQAAFEIIQKFLKRIGYSA
>NZ_CP041587.1|WP_000774031.1|2348257_2349073_+|ethanolamine-ammonia-lyase-subunit-EutC
MKLNRDIQYPSSTHQDQWEKLKQFTDARIALGRAGCSIPTRALLEFQLSHAQAKDAVYQHMDLPYLSEQLQQKQLQTLHVQSNASNKEIYLKRPDLGRQLSNPSKEALIKEYTDNPKPYDVCIVAGDGLSARAIEANAIAFIAALSEHIQQENWRLTPIVLATGSRVALGDEVAEIFKASMLVMLIGERPGLSSPDSMGIYYTWNAYSGCLDSKRNCISNVRSAGLSIPVAVQRLMALMRKSKQLGFSGVNLKDEHQLSNIDHNENAKLLF
>NZ_CP041587.1|WP_000122143.1|2346861_2348247_+|ethanolamine-ammonia-lyase-subunit-EutB
MSYRNIVANQQYHFADLKTLMAKATPLRSGDELAGVAARDATEHVAAQMTLADVPLKTFLNEVLVDYETDEITRLIIDEHDLAAFAPISHFTVGDFRNWLLGEDATAESLKALASGLTPEMVAAVSKIMRNQDLIYVASKCEVVTQFRNTIGLKGHLSTRLQPNHPTDDVLGISASILDGLMYGNGDAVIGINPATDNLHNLSELLKLLDHVIQEYQIPTQSCVLTHISSGIQLAEKNVPIDLMFQSIAGTQLANEGFGISLDLLQEGYEATLSLKRGTIGQNVMYFETGQGSALSSNAHHGVDQQTLETRAYAVARKYNPLLVNTVVGFIGPEYLFNGKQIIRAGLEDHFCGKLLGVPMGCDICYTNHADADQNDMDVLLTLFGAAGINFIMGIPGSDDVMLNYQTTSFHDALYLRQLLGLKPAPEFSAWLEQQGIFKQQNSQICWADHMPDQFSRLLMN
>NZ_CP041587.1|WP_001075435.1|2345408_2346845_+|ethanolamine-permease
MNQPETASVISSSAEVSSAEYFAQRQLKQGTVGWLLLIGLGVAYVISGDFAGWNFGIAQGGWGGMFIATALAALMYLCLCLSMSEMSTMMPTAGGGYSFARAAFGPFGGYLTGTAILIEYAIAPAAIAVFIGGYCESLFGINGWMIYLACYAIFMGIHLKGAGEALKIMFAITLVAAVALVVFIGAMIPHFNAQNLFDIPVSTGVGASLFLPHGYLGIWAAVPFAIWFFLAVEGVPLAAEEAKDPAKSLPRGLIGAMLILTAFAMLILFLGAGAAGASTLQNSGAPLVDALVKVYGTNTWLATFVNFVGLAGLIASFFSIIYAYSRQIFALSRAGYLPTSLSLTNKNKAPYLAIIIPGIIGFLLSLTKEGDSLILIAVFGATISYVLILLSHIKLRLSKPDMPRPYKTPGGIITSSIALVLAVAAVVAGFVVNPKVWFIAAGIYVVFIAYFLFYSRYHLVKGTPEEEFANIKAAEQEL
>NZ_CP041587.1|WP_001269055.1|2343675_2345187_+|aldehyde-dehydrogenase-family-protein
MRYIDPNQPGSKVQFKSQYENFIGGEWVAPLKGEYFDNVSPVDGKAFTRIPRSSAEDIELALDAAHKAKASWNKSSPTTRSNILLKIADRLEANLEMLAVAETWDNGKAVRETLAADLPLAIDHFRYFAGCIRAQEGGISEIDEDTIAYHFHEPLGVVGQIIPWNFPILMAAWKLAPALAAGNCVVIKPAEQTPVGILLVAELIQDILPPGVLNIVNGFGAEVGRPLATSPRIAKIAFTGSTQTGQMVMQYATENIIPVTLELGGKSPNLFFEDIMDKEDDFLEKTLEGFAMFALNQGEVCTCPSRALVQESIADQFLELAVERVKRIKTGHPLDTETMIGAQASLQQQEKILRCINTGREEGAELLLGGSGRKEVGDGFYVDPTIFKGHNSMQVFQEEIFGPVLAVTTFKDFDDAIKIANDTMYGLGAGVWSRSAHISYRAGRAIEAGRVWTNCYNIYPAHAAFGGYKKSGIGRENHKMMLDHYQQTKNLLVSYSTKPMGFF
>NZ_CP041587.1|WP_000494375.1|2342341_2343532_-|transcriptional-regulator
MFTKKDLLQQRMLIDQLRTQNSLSPQNAAKLGQSIASSWERSASAAIPKERFAAPLLERKSASQNALDLALSQCADDLRHIAEQSSMVIAVGDIGSTIIWTASSAQMQSAAERVHFVQGGQWREEFVGTNALALSLKTQQSSCVFSNEHYMESIHDWVCYAAPIIDPYSKQTLGVVDLSTTWKNHNTLGILAAERCASIIQSALLEQQRQHLHIRAFSTPQVKFNGKSLLLTPRQIEILTILALCPHGLTLEHLYQALYGERKVSMGTLKAEMSQLRDILGGLLGSRPYRLLVHVEADFLQAEQALDAGYVASALQLYTGVFLAKTESPFLCAWRDCLESRLSDAIFKTQETDLLLKHLAHFPEAIDAVERLMELLPSEHPAHQLLVKYIESPKLS
>NZ_CP041587.1|WP_001098144.1|2341376_2342345_+|alpha/beta-hydrolase
MNTSTAKHNYAPDILGAGYEQLTLNFPDDYEGKVVATLVRKKATQPTQKAVLYIHGFLDYFFQTEMAEQFNAHGYDFYALDLRKYGRSKLPHQIFYNVLDLNEYDAEITQALEIIGQEKHTQVLLAGHSTGGLTATLYAAHHPDHPLIKALWANSPFYDFNLSLVEKRFGIPMLSRVGKYLPKVKFPSQLNKWYTTSLHKQLKGEWDFNLDWKPTSAPTVQLSFVHAIHTAQKEIHRGVKLNVPALIMHSHQTKNPRKWGPDATQSDVILDVKDIAKFGKKMKGDVSVVSIHNGLHDLVLSAQPVREQVYQQLFQWLDQKVT
>NZ_CP041587.1|WP_000874704.1|2340009_2341182_+|iron-containing-alcohol-dehydrogenase
MAFKNIADQTNGFYIPCVSLFGPGCAKEIGTKAQNLGAKKALIVTDEGLFKFGVADLIASYLTEAGVASHIFPGAEPNPTDINVHNGVNAYNENGCDFIVSLGGGSSHDCAKGIGLVTAGGGHIRDYEGIDKSKVPMTPLIAVNTTAGTASEMTRFCIITNTDTHVKMAIVDWRCTPLIAIDDPKLMIAKPAGLTAATGMDALTHAVEAYVSTAANPITDACAEKAITMISQWLQPAVANGENIEARDAMSYAQYLAGMAFNNASLGYVHAMAHQLGGFYNLPHGVCNAILLPHVCEFNLIACPDRYAKIAELMGVNTHGLTVTEAAYAAIDAIRKLSSSIGIPSGLTELGVKTEDLAVMAENAQKDACMLTNPRKANHAQVVEIFKAAL
>NZ_CP041587.1|WP_000808297.1|2338066_2339779_-|AAA-family-ATPase
MKQETALKLLKAGENVFLTGSAGAGKTYTLNQYIHYLKARKVPVAITASTGIAATHMNGMTIHTWAGIGIKDHLTDDDLKRMKERKYLKEHLENAQVLVIDEISMLHAKQLNLVNQVLKYFKESDEAFGGIQVIVAGDFFQLPPVGRNGEANRDKFCFMSDAWVEAKFRVCYLTEQHRQDDEILNQILNAIRAQSIQTEHLQALHQSRTHDIGETFTRLYTHNMDVDNINYQHLNEIDNEGHQFNAVLDGNEKLLETLKSSVRAPEELTLKKHAKVMFVKNNFDMGYINGSLGEVIGFEEDDENGLLPKVKLTDGTTLLVAPETWSIENEAGKVIASFQQIPLRLAWAITIHKSQGMTLEAAEINLMHTFEKGQGYVALSRLKSLTGLKLLGFNEQALELDSLAVKADRRFQELSKEAEDNFANVDLTAQHKAFIRHCGGTLNETEISRNEKKLARGEKQNYASATLDETRALFEEGYEIEDIAHERGLTPATIINHLARLHKEQKLDISVAHPGEEVVEEVRKIYKKLKKRQNPDHFSDDGSIKLRPIVEATSPRMGYDQVRLALLFIE
>NZ_CP041587.1|WP_001983672.1|2337663_2338029_-|5-carboxymethyl-2-hydroxymuconate-Delta-isomerase
MAMPHVVVDYSDNLTGLNAKQLLEEINTTLIETELFSPEDIKSRARRDEVFLIGLGVDQAYIHVKAYILSGRTAEQKQLVGEQLLAALSNKKYLPQEFNKEIQLCVELIDMPRDDYFKQVV
>NZ_CP041587.1|WP_000009660.1|2352340_2352850_+|peptidyl-prolyl-cis-trans-isomerase
MSFPQVELNTNKGRIVLELNTEKAPKTAANFLEYVRDGFYDGVIFHRVIDGFMIQGGGFDENFKEKATRDAIENEADNGLSNDVGTIAMARTQAPHSASAQFFINVKNNSFLNHTSKTAQGWGYAVFGKVVEGMDVVEAIKGVRTGNRGYHADVPLENVVIESAKIISE
>NZ_CP041587.1|WP_111916255.1|2352865_2353585_+|UDP-2,3-diacylglucosamine-diphosphatase
MTYLFISDLHLSPEHPRLVRGFLDLLVHYQNKQTQLYILGDWFNAWIGDDYSAPWLEEIVEALKVFNQKGNRVYFQVGNRDFALNQVFLDKFNGVLLPDIYYLNIAGHQYRLEHGDALCTDDISYQRFKKIIRNPFLVAFLRRTPLSFRTKLVNGFRKRSHSDKQQKSYEIMDVNEQAALSALTDVDILIHGHTHRPAIHQLQHKQRIVLGDWREDQAYILEIDPSSNTQRLELIVWNY
>NZ_CP041587.1|WP_000462395.1|2353592_2353823_-|hypothetical-protein
MFELIPINRKNKLREIRIIKAFLIFAFVLCLLILYIEYQKYAHINWKFVYITCLCMIWDFDLNKKIKELKVQIKSD
>NZ_CP041587.1|WP_000365033.1|2353962_2354616_+|oxygen-insensitive-NAD(P)H-nitroreductase
MDLLNTVKSRYTTKAYDPEKKIPQEKFNKLLEILRFTPSSVNIQPWHFLVADNPTAKERIAKALTGRYAYNAPKVLESSHTLVFCTRTDISPEYLNQLLEQDDLSGRFKDEKAKLGQKDTRHGYVEFYRNEQKNLFGWMENQTFIALGQLLFAAGLEGIDATPMGGFDEDVLNEEFGLKEKGLRSSVIISLGYRSENDFNAKLPKSRLPDEVIFTHL
>NZ_CP041587.1|WP_000242908.1|2354654_2355512_-|EamA-family-transporter
MVLIFAAALCSVLVSLLLKNLKKKGYQPMQMIAWNYASASLLCYLWFKPDIQHISIQHTPWWLIVALGVILPSIFLCLAKSLEYAGIVKTEIAQRLSVVLSLLAAYFFFQEQFNSLKLLGIGLGIFAVLLILLGHFNESSGSQPKKAIFALMSVWFGYAAVDILLKYTSSLGLQFTLTLNLIFITAFVLSIIYLIFQKNSAWHFKNTFAGLMLGVLNFSNIALYVKAHILLKDSPAIVFASMNILVVLLGIVCGVLLYKEKLKLPTILGIILGISGLVSLALAMK
>NZ_CP041587.1|WP_001983665.1|2355643_2356162_-|RNA-chaperone-Hfq
MELKMSKGQTLQDPFLNSLRKERIPVSIFLVNGIKLQGHIESFDQYVVLLKNTVSQMVYKHAISTVVPARNPRPAGAQGAGFPAQGGSQGGFGGQGAGFGGAQGAGFGGQGGFGGQGGFGGQGGFGGQGGFGGQGGFGGQGGFGGQGGFGGHQGGFDNDSKFEDGQDDENNR
>NZ_CP041587.1|WP_000070779.1|2356243_2357188_-|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA
MSNQLPVINLMGPTASGKTALACELYERGNFELISVDSALVYKDMDIGTAKPTREEQELYPHHLIDIITPLEVYSAAQFVEDACALIDEMHSRGKTPILVGGTMLYFKALLEGLSSNLPSADANVRAAIEEKAANEGWQAVYDELVAVDPAAGVKFKVSDKQRIIRALEVYRITGQPITKLQAEQPKNVPYRYTFHNYALLPDRLELHQRIEQRLSKMWDIGFLSEVESLIEKYDLDENLPSMRSVGYRQALEFLLKSDMSLKKKQEMEDKALFATRQLAKRQYTWLRSLQEIHDFKTYLTIKQAKEDLRNSYG
>NZ_CP041587.1|WP_000129008.1|2357194_2359147_-|DNA-mismatch-repair-endonuclease-MutL
MTDEKLTQRRIHTLDAALANQIAAGEVIERPSSVVKELLENSIDAGATELIVRIAQGGSTLIEIIDNGHGIHPDDLPLAVMRHATSKIKTAEDLHAIVSLGFRGEALASIAAVSRLTLTSSQDESGIGHQVEVNGTAFDHQQVQAVAAQKGTHIRVQDLFFNVPARRKFLKKPTTEFGHIEEIVRRLALTHFDIRFVLEHNDNIRINLPIADSGELRFQRVQQLLGQQFVQNAYWIDAESINMRLSGWLGHPSDARAQADLQYVYVNGRIVKDKTISHALRMAYDGILHGHQHSSYLLFLEVDPENIDVNVHPTKHEIRFLNQREVHEFVRHYAKETLAQFQTASADLAQAMKVDDTQNLSVQPQPKYQEQFTLHRTAQAADTAVDKPNGYQPSTELLTDFNNSRPQAVHYAEQTPKYNGSAQLNNALKTYLAPLRDQPTNFSVDENIEPVAKVDEFPLGIAIAQLHGIYILAQNTEGLIIVDMHAAHERILLQQMKNAWDKPEFWTSQQLLIPKVISISRMQAVRVEDLKPQLERLGLEIDLYGDEQVIVRGVPAILQKADFENLIPELLNDLDPNDEAQGLLQKRDELLAGMACHGAVRAHRQLSLSEMNALLRQMEQTEFASQCNHGRPTWRAFPLSQLDKLFARGE
>NZ_CP041587.1|WP_031947145.1|2359139_2359613_-|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE
MSYSLKMVLNHEEDTQHLAQALAQHVQAGVIYLIGDLGAGKTTLTRYFLQALGHKGSVKSPTYTLVEPYKINNKEIFHFDLYRLNDPYELELMGIRDYLDIQDALFLFEWPSKGGDEIPEADIIIDIQKSDDELNRFVTLTLPTEHLYQTLQEQLHD
>NZ_CP041587.1|WP_085920724.1|2359762_2360641_+|pseudouridylate-synthase
MIDGVSASQVYLPPQTTAQTIYQFLCENFPHIKATEWQQRFQDGLIYAANGEKLTLNSSYIANTHIFYYRFLANEVHVPFEHQILFENDDLLVVDKPHFLTISPTGQYVQETLLVRLKKQTGNEFLTPIHRLDRETAGVVLFCKRPQSRGIYQQLFADRQVNKIYHAIAPYKAELKFPQSLKLYLDKGTPFYTMQVIAHTKTNTETKIELIEHNHSWAKYCLTPTTGKQHQLRVHLNHLGIPIKNDPFYPIVQHKADDDFSQPLQLLAKQISFIDPLTKQEMVFNSQLELTL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP041587_2	2.2\|1540943\|22\|NZ_CP041587\|CRT	1540943-1540964	22	HQ632859	Loktanella phage pCB2051-A genomic sequence	10069-10090	2	0.909
NZ_CP041587_2	2.2\|1540943\|22\|NZ_CP041587\|CRT	1540943-1540964	22	NZ_CP032685	Rhizobium sp. CCGE531 plasmid pRCCGE531d, complete sequence	845390-845411	2	0.909
NZ_CP041587_2	2.2\|1540943\|22\|NZ_CP041587\|CRT	1540943-1540964	22	NZ_CP032690	Rhizobium sp. CCGE532 plasmid pRCCGE532d, complete sequence	844910-844931	2	0.909
NZ_CP041587_2	2.2\|1540943\|22\|NZ_CP041587\|CRT	1540943-1540964	22	NZ_CP039913	Agrobacterium tumefaciens strain CFBP6625 plasmid pAtCFBP6625b, complete sequence	39200-39221	2	0.909
NZ_CP041587_2	2.3\|1541006\|22\|NZ_CP041587\|CRT	1541006-1541027	22	NZ_CP032120	Acinetobacter lwoffii strain ED45-23 plasmid pALWED2.5, complete sequence	5545-5566	2	0.909
NZ_CP041587_2	2.3\|1541006\|22\|NZ_CP041587\|CRT	1541006-1541027	22	NZ_CP032120	Acinetobacter lwoffii strain ED45-23 plasmid pALWED2.5, complete sequence	5740-5761	2	0.909
NZ_CP041587_2	2.3\|1541006\|22\|NZ_CP041587\|CRT	1541006-1541027	22	NZ_CP032120	Acinetobacter lwoffii strain ED45-23 plasmid pALWED2.5, complete sequence	5806-5827	2	0.909
NZ_CP041587_2	2.3\|1541006\|22\|NZ_CP041587\|CRT	1541006-1541027	22	NZ_CP032120	Acinetobacter lwoffii strain ED45-23 plasmid pALWED2.5, complete sequence	6061-6082	2	0.909
NZ_CP041587_2	2.3\|1541006\|22\|NZ_CP041587\|CRT	1541006-1541027	22	NZ_CP032120	Acinetobacter lwoffii strain ED45-23 plasmid pALWED2.5, complete sequence	6385-6406	2	0.909
NZ_CP041587_2	2.3\|1541006\|22\|NZ_CP041587\|CRT	1541006-1541027	22	NZ_CP032120	Acinetobacter lwoffii strain ED45-23 plasmid pALWED2.5, complete sequence	6451-6472	2	0.909
NZ_CP041587_2	2.3\|1541006\|22\|NZ_CP041587\|CRT	1541006-1541027	22	NZ_CP032120	Acinetobacter lwoffii strain ED45-23 plasmid pALWED2.5, complete sequence	6520-6541	2	0.909
NZ_CP041587_2	2.3\|1541006\|22\|NZ_CP041587\|CRT	1541006-1541027	22	NC_023610	Erwinia phage PhiEaH1, complete genome	11473-11494	2	0.909
NZ_CP041587_2	2.5\|1541135\|25\|NZ_CP041587\|CRT	1541135-1541159	25	NC_015057	Granulicella tundricola MP5ACTX9 plasmid pACIX901, complete sequence	409141-409165	3	0.88
NZ_CP041587_2	2.6\|1541201\|25\|NZ_CP041587\|CRT	1541201-1541225	25	NZ_CP012477	Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence	209818-209842	3	0.88
NZ_CP041587_2	2.8\|1541327\|25\|NZ_CP041587\|CRT	1541327-1541351	25	NZ_CP029209	Nitratireductor sp. OM-1 plasmid pOM-1, complete sequence	442860-442884	3	0.88
NZ_CP041587_2	2.12\|1541591\|25\|NZ_CP041587\|CRT	1541591-1541615	25	NZ_CP029209	Nitratireductor sp. OM-1 plasmid pOM-1, complete sequence	442860-442884	3	0.88
NZ_CP041587_2	2.4\|1541069\|25\|NZ_CP041587\|CRT	1541069-1541093	25	NZ_CP012477	Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence	209818-209842	4	0.84
NZ_CP041587_2	2.5\|1541135\|25\|NZ_CP041587\|CRT	1541135-1541159	25	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	422068-422092	4	0.84
NZ_CP041587_2	2.5\|1541135\|25\|NZ_CP041587\|CRT	1541135-1541159	25	NC_006362	Nocardia farcinica IFM 10152 plasmid pNF1, complete sequence	166928-166952	4	0.84
NZ_CP041587_2	2.5\|1541135\|25\|NZ_CP041587\|CRT	1541135-1541159	25	NZ_LN868941	Nocardia farcinica strain NCTC11134 plasmid 4, complete sequence	77082-77106	4	0.84
NZ_CP041587_2	2.5\|1541135\|25\|NZ_CP041587\|CRT	1541135-1541159	25	NZ_CP031419	Nocardia farcinica strain W6977 plasmid unnamed1, complete sequence	18963-18987	4	0.84
NZ_CP041587_2	2.5\|1541135\|25\|NZ_CP041587\|CRT	1541135-1541159	25	NC_016587	Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence	210540-210564	4	0.84
NZ_CP041587_2	2.5\|1541135\|25\|NZ_CP041587\|CRT	1541135-1541159	25	NZ_CP026745	Nocardia cyriacigeorgica strain MDA3349 isolate MDA3349 ancestor plasmid p_unnamed, complete sequence	97121-97145	4	0.84
NZ_CP041587_2	2.5\|1541135\|25\|NZ_CP041587\|CRT	1541135-1541159	25	NZ_CP049700	Bradyrhizobium sp. 1S5 strain 323S2 plasmid pB323S2a, complete sequence	20732-20756	4	0.84
NZ_CP041587_2	2.5\|1541135\|25\|NZ_CP041587\|CRT	1541135-1541159	25	NZ_CP032347	Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence	796799-796823	4	0.84
NZ_CP041587_2	2.5\|1541135\|25\|NZ_CP041587\|CRT	1541135-1541159	25	MN586025	Mycobacterium phage Mdavu, complete genome	39971-39995	4	0.84
NZ_CP041587_2	2.5\|1541135\|25\|NZ_CP041587\|CRT	1541135-1541159	25	KT281789	Mycobacterium phage Enkosi, complete genome	42595-42619	4	0.84
NZ_CP041587_2	2.5\|1541135\|25\|NZ_CP041587\|CRT	1541135-1541159	25	MH020245	Mycobacterium phage SgtBeansprout, complete genome	39982-40006	4	0.84
NZ_CP041587_2	2.5\|1541135\|25\|NZ_CP041587\|CRT	1541135-1541159	25	KX808132	Mycobacterium phage Amelie, complete genome	39982-40006	4	0.84
NZ_CP041587_2	2.5\|1541135\|25\|NZ_CP041587\|CRT	1541135-1541159	25	MH399770	Mycobacterium phage Biglebops, complete genome	39982-40006	4	0.84
NZ_CP041587_2	2.5\|1541135\|25\|NZ_CP041587\|CRT	1541135-1541159	25	MK291444	Paracoccus phage vB_PthS_Pthi1, complete genome	36056-36080	4	0.84
NZ_CP041587_2	2.5\|1541135\|25\|NZ_CP041587\|CRT	1541135-1541159	25	MF919518	Mycobacterium phage LilPharaoh, complete genome	39710-39734	4	0.84
NZ_CP041587_2	2.8\|1541327\|25\|NZ_CP041587\|CRT	1541327-1541351	25	NZ_CP032120	Acinetobacter lwoffii strain ED45-23 plasmid pALWED2.5, complete sequence	5929-5953	4	0.84
NZ_CP041587_2	2.11\|1541525\|25\|NZ_CP041587\|CRT	1541525-1541549	25	MK291444	Paracoccus phage vB_PthS_Pthi1, complete genome	36056-36080	4	0.84
NZ_CP041587_2	2.11\|1541525\|25\|NZ_CP041587\|CRT	1541525-1541549	25	NZ_CP015523	Sphingomonas sp. NIC1 plasmid unnamed2, complete sequence	9887-9911	4	0.84
NZ_CP041587_2	2.11\|1541525\|25\|NZ_CP041587\|CRT	1541525-1541549	25	MN444870	Gordonia phage Syleon, complete genome	31883-31907	4	0.84
NZ_CP041587_2	2.11\|1541525\|25\|NZ_CP041587\|CRT	1541525-1541549	25	NZ_CP010684	Phaeobacter piscinae strain P14 plasmid pP14_c, complete sequence	73169-73193	4	0.84
NZ_CP041587_2	2.11\|1541525\|25\|NZ_CP041587\|CRT	1541525-1541549	25	NZ_CP010808	Phaeobacter piscinae strain P23 plasmid pP23_c, complete sequence	66353-66377	4	0.84
NZ_CP041587_2	2.11\|1541525\|25\|NZ_CP041587\|CRT	1541525-1541549	25	NZ_CP010646	Phaeobacter piscinae strain P36 plasmid pP36_c, complete sequence	66353-66377	4	0.84
NZ_CP041587_2	2.11\|1541525\|25\|NZ_CP041587\|CRT	1541525-1541549	25	NZ_CP010692	Phaeobacter piscinae strain P42 plasmid pP42_c, complete sequence	66353-66377	4	0.84
NZ_CP041587_2	2.12\|1541591\|25\|NZ_CP041587\|CRT	1541591-1541615	25	NZ_CP032120	Acinetobacter lwoffii strain ED45-23 plasmid pALWED2.5, complete sequence	5929-5953	4	0.84
NZ_CP041587_2	2.5\|1541135\|25\|NZ_CP041587\|CRT	1541135-1541159	25	NC_010333	Caulobacter sp. K31 plasmid pCAUL02, complete sequence	33241-33265	5	0.8
NZ_CP041587_2	2.11\|1541525\|25\|NZ_CP041587\|CRT	1541525-1541549	25	NZ_CP021649	Acidovorax sp. T1 plasmid p1-T1, complete sequence	113836-113860	5	0.8
NZ_CP041587_2	2.13\|1541657\|28\|NZ_CP041587\|CRT	1541657-1541684	28	MK291444	Paracoccus phage vB_PthS_Pthi1, complete genome	36056-36083	5	0.821
NZ_CP041587_2	2.13\|1541657\|28\|NZ_CP041587\|CRT	1541657-1541684	28	NC_048792	Serratia phage Moabite, complete genome	38287-38314	6	0.786
NZ_CP041587_2	2.13\|1541657\|28\|NZ_CP041587\|CRT	1541657-1541684	28	NZ_CP012940	Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence	115741-115768	7	0.75
NZ_CP041587_2	2.13\|1541657\|28\|NZ_CP041587\|CRT	1541657-1541684	28	NZ_CP012944	Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence	2047559-2047586	7	0.75
NZ_CP041587_2	2.13\|1541657\|28\|NZ_CP041587\|CRT	1541657-1541684	28	NZ_CP051295	Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence	115488-115515	7	0.75
NZ_CP041587_2	2.13\|1541657\|28\|NZ_CP041587\|CRT	1541657-1541684	28	MF285618	Serratia phage 2050HW, complete genome	246924-246951	7	0.75
NZ_CP041587_2	2.13\|1541657\|28\|NZ_CP041587\|CRT	1541657-1541684	28	NC_017575	Ralstonia solanacearum Po82 megaplasmid, complete sequence	1904531-1904558	7	0.75
NZ_CP041587_2	2.13\|1541657\|28\|NZ_CP041587\|CRT	1541657-1541684	28	NZ_CP026308	Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence	1904475-1904502	7	0.75
NZ_CP041587_1	1.22\|987114\|37\|NZ_CP041587\|CRT,CRISPRCasFinder,PILER-CR	987114-987150	37	NZ_CP049808	Acinetobacter pittii strain A1254 plasmid pA1254_2, complete sequence	33648-33684	8	0.784
NZ_CP041587_2	2.10\|1541453\|31\|NZ_CP041587\|CRT	1541453-1541483	31	NZ_CP029209	Nitratireductor sp. OM-1 plasmid pOM-1, complete sequence	442854-442884	8	0.742
NZ_CP041587_2	2.10\|1541453\|31\|NZ_CP041587\|CRT	1541453-1541483	31	NZ_CP054035	Rhizobium sp. JKLM13E plasmid pPR13E04, complete sequence	150221-150251	9	0.71
NZ_CP041587_2	2.10\|1541453\|31\|NZ_CP041587\|CRT	1541453-1541483	31	NZ_CP054024	Rhizobium sp. JKLM12A2 plasmid pPR12A203, complete sequence	26794-26824	9	0.71
NZ_CP041587_1	1.8\|986274\|37\|NZ_CP041587\|CRT,CRISPRCasFinder	986274-986310	37	MT375042	Acinetobacter phage vB_AbaP_Alexa, complete genome	29527-29563	10	0.73

1. spacer 2.2|1540943|22|NZ_CP041587|CRT matches to HQ632859 (Loktanella phage pCB2051-A genomic sequence) position: , mismatch: 2, identity: 0.909

ccgcggtcgcggtcgtgatgat	CRISPR spacer
tcgcggtcgcggtcgtgatgaa	Protospacer
.********************

2. spacer 2.2|1540943|22|NZ_CP041587|CRT matches to NZ_CP032685 (Rhizobium sp. CCGE531 plasmid pRCCGE531d, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcggtcgcggtcgtgatgat	CRISPR spacer
caacggtcgcggtcgtgatgat	Protospacer
* .*******************

3. spacer 2.2|1540943|22|NZ_CP041587|CRT matches to NZ_CP032690 (Rhizobium sp. CCGE532 plasmid pRCCGE532d, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcggtcgcggtcgtgatgat	CRISPR spacer
caacggtcgcggtcgtgatgat	Protospacer
* .*******************

4. spacer 2.2|1540943|22|NZ_CP041587|CRT matches to NZ_CP039913 (Agrobacterium tumefaciens strain CFBP6625 plasmid pAtCFBP6625b, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcggtcgcggtcgtgatgat	CRISPR spacer
ccgcggtcgaggtcgtgatgaa	Protospacer
********* ***********

5. spacer 2.3|1541006|22|NZ_CP041587|CRT matches to NZ_CP032120 (Acinetobacter lwoffii strain ED45-23 plasmid pALWED2.5, complete sequence) position: , mismatch: 2, identity: 0.909

ccgtggccgcagtcgtgatgac	CRISPR spacer
acgtggtcgcagtcgtgatgac	Protospacer
 *****.***************

6. spacer 2.3|1541006|22|NZ_CP041587|CRT matches to NZ_CP032120 (Acinetobacter lwoffii strain ED45-23 plasmid pALWED2.5, complete sequence) position: , mismatch: 2, identity: 0.909

ccgtggccgcagtcgtgatgac	CRISPR spacer
acgtggtcgcagtcgtgatgac	Protospacer
 *****.***************

7. spacer 2.3|1541006|22|NZ_CP041587|CRT matches to NZ_CP032120 (Acinetobacter lwoffii strain ED45-23 plasmid pALWED2.5, complete sequence) position: , mismatch: 2, identity: 0.909

ccgtggccgcagtcgtgatgac	CRISPR spacer
acgtggtcgcagtcgtgatgac	Protospacer
 *****.***************

8. spacer 2.3|1541006|22|NZ_CP041587|CRT matches to NZ_CP032120 (Acinetobacter lwoffii strain ED45-23 plasmid pALWED2.5, complete sequence) position: , mismatch: 2, identity: 0.909

ccgtggccgcagtcgtgatgac	CRISPR spacer
acgtggtcgcagtcgtgatgac	Protospacer
 *****.***************

9. spacer 2.3|1541006|22|NZ_CP041587|CRT matches to NZ_CP032120 (Acinetobacter lwoffii strain ED45-23 plasmid pALWED2.5, complete sequence) position: , mismatch: 2, identity: 0.909

ccgtggccgcagtcgtgatgac	CRISPR spacer
acgtggtcgcagtcgtgatgac	Protospacer
 *****.***************

10. spacer 2.3|1541006|22|NZ_CP041587|CRT matches to NZ_CP032120 (Acinetobacter lwoffii strain ED45-23 plasmid pALWED2.5, complete sequence) position: , mismatch: 2, identity: 0.909

ccgtggccgcagtcgtgatgac	CRISPR spacer
acgtggtcgcagtcgtgatgac	Protospacer
 *****.***************

11. spacer 2.3|1541006|22|NZ_CP041587|CRT matches to NZ_CP032120 (Acinetobacter lwoffii strain ED45-23 plasmid pALWED2.5, complete sequence) position: , mismatch: 2, identity: 0.909

ccgtggccgcagtcgtgatgac	CRISPR spacer
acgtggtcgcagtcgtgatgac	Protospacer
 *****.***************

12. spacer 2.3|1541006|22|NZ_CP041587|CRT matches to NC_023610 (Erwinia phage PhiEaH1, complete genome) position: , mismatch: 2, identity: 0.909

ccgtggccgcagtcgtgatgac	CRISPR spacer
ccgtggccgcagccgtgatgat	Protospacer
************.********.

13. spacer 2.5|1541135|25|NZ_CP041587|CRT matches to NC_015057 (Granulicella tundricola MP5ACTX9 plasmid pACIX901, complete sequence) position: , mismatch: 3, identity: 0.88

tcgtggccgcagccgccgtgatgac	CRISPR spacer
tcgtgtccgaagccgccgtgatgaa	Protospacer
***** *** **************

14. spacer 2.6|1541201|25|NZ_CP041587|CRT matches to NZ_CP012477 (Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence) position: , mismatch: 3, identity: 0.88

tcgtggtcgcagccgccgtgatgac	CRISPR spacer
tcgtggtcgccgccgccctgatgtc	Protospacer
********** ****** ***** *

15. spacer 2.8|1541327|25|NZ_CP041587|CRT matches to NZ_CP029209 (Nitratireductor sp. OM-1 plasmid pOM-1, complete sequence) position: , mismatch: 3, identity: 0.88

ccgtggccgcagtcgttatgatgat	CRISPR spacer
gcgtggccgcagccgttatgatggt	Protospacer
 ***********.**********.*

16. spacer 2.12|1541591|25|NZ_CP041587|CRT matches to NZ_CP029209 (Nitratireductor sp. OM-1 plasmid pOM-1, complete sequence) position: , mismatch: 3, identity: 0.88

ccgtggccgcagtcgttatgatgat	CRISPR spacer
gcgtggccgcagccgttatgatggt	Protospacer
 ***********.**********.*

17. spacer 2.4|1541069|25|NZ_CP041587|CRT matches to NZ_CP012477 (Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.84

tcgtggtcgcagccgccgtgatgat	CRISPR spacer
tcgtggtcgccgccgccctgatgtc	Protospacer
********** ****** ***** .

18. spacer 2.5|1541135|25|NZ_CP041587|CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 4, identity: 0.84

tcgtggccgcagccgccgtgatgac	CRISPR spacer
gcctggccgcagccgccgtgatggg	Protospacer
 * ********************.

19. spacer 2.5|1541135|25|NZ_CP041587|CRT matches to NC_006362 (Nocardia farcinica IFM 10152 plasmid pNF1, complete sequence) position: , mismatch: 4, identity: 0.84

tcgtggccgcagccgccgtgatgac	CRISPR spacer
tcgtggccgcggccgccgtgttggt	Protospacer
**********.********* **..

20. spacer 2.5|1541135|25|NZ_CP041587|CRT matches to NZ_LN868941 (Nocardia farcinica strain NCTC11134 plasmid 4, complete sequence) position: , mismatch: 4, identity: 0.84

tcgtggccgcagccgccgtgatgac	CRISPR spacer
tcgtggccgcggccgccgtgctggt	Protospacer
**********.********* **..

21. spacer 2.5|1541135|25|NZ_CP041587|CRT matches to NZ_CP031419 (Nocardia farcinica strain W6977 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.84

tcgtggccgcagccgccgtgatgac	CRISPR spacer
tcgtggccgcggccgccgtgctggt	Protospacer
**********.********* **..

22. spacer 2.5|1541135|25|NZ_CP041587|CRT matches to NC_016587 (Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence) position: , mismatch: 4, identity: 0.84

tcgtggccgcagccgccgtgatgac	CRISPR spacer
tcgtggccgcagccgccgcgctgga	Protospacer
******************.* **.

23. spacer 2.5|1541135|25|NZ_CP041587|CRT matches to NZ_CP026745 (Nocardia cyriacigeorgica strain MDA3349 isolate MDA3349 ancestor plasmid p_unnamed, complete sequence) position: , mismatch: 4, identity: 0.84

tcgtggccgcagccgccgtgatgac	CRISPR spacer
tcgtggccgcggccgccgtgttggt	Protospacer
**********.********* **..

24. spacer 2.5|1541135|25|NZ_CP041587|CRT matches to NZ_CP049700 (Bradyrhizobium sp. 1S5 strain 323S2 plasmid pB323S2a, complete sequence) position: , mismatch: 4, identity: 0.84

tcgtggccgcagccgccgtgatgac	CRISPR spacer
gcgaggccgcagccgccgtgctgaa	Protospacer
 ** **************** ***

25. spacer 2.5|1541135|25|NZ_CP041587|CRT matches to NZ_CP032347 (Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence) position: , mismatch: 4, identity: 0.84

tcgtggccgcagccgccgtgatgac	CRISPR spacer
cggtggccgccgccgcggtgatgac	Protospacer
. ******** ***** ********

26. spacer 2.5|1541135|25|NZ_CP041587|CRT matches to MN586025 (Mycobacterium phage Mdavu, complete genome) position: , mismatch: 4, identity: 0.84

tcgtggccgcagccgccgtgatgac	CRISPR spacer
tggtggccgcagccgcagtgatgct	Protospacer
* ************** ****** .

27. spacer 2.5|1541135|25|NZ_CP041587|CRT matches to KT281789 (Mycobacterium phage Enkosi, complete genome) position: , mismatch: 4, identity: 0.84

tcgtggccgcagccgccgtgatgac	CRISPR spacer
tggtggccgcagccgcagtgatgct	Protospacer
* ************** ****** .

28. spacer 2.5|1541135|25|NZ_CP041587|CRT matches to MH020245 (Mycobacterium phage SgtBeansprout, complete genome) position: , mismatch: 4, identity: 0.84

tcgtggccgcagccgccgtgatgac	CRISPR spacer
tggtggccgcagccgcagtgatgct	Protospacer
* ************** ****** .

29. spacer 2.5|1541135|25|NZ_CP041587|CRT matches to KX808132 (Mycobacterium phage Amelie, complete genome) position: , mismatch: 4, identity: 0.84

tcgtggccgcagccgccgtgatgac	CRISPR spacer
tggtggccgcagccgcagtgatgct	Protospacer
* ************** ****** .

30. spacer 2.5|1541135|25|NZ_CP041587|CRT matches to MH399770 (Mycobacterium phage Biglebops, complete genome) position: , mismatch: 4, identity: 0.84

tcgtggccgcagccgccgtgatgac	CRISPR spacer
tggtggccgcagccgcagtgatgct	Protospacer
* ************** ****** .

31. spacer 2.5|1541135|25|NZ_CP041587|CRT matches to MK291444 (Paracoccus phage vB_PthS_Pthi1, complete genome) position: , mismatch: 4, identity: 0.84

tcgtggccgcagccgccgtgatgac	CRISPR spacer
ctgtggccgcggccgtcgtgatgac	Protospacer
..********.****.*********

32. spacer 2.5|1541135|25|NZ_CP041587|CRT matches to MF919518 (Mycobacterium phage LilPharaoh, complete genome) position: , mismatch: 4, identity: 0.84

tcgtggccgcagccgccgtgatgac	CRISPR spacer
tggtggccgcagccgcagtgatgct	Protospacer
* ************** ****** .

33. spacer 2.8|1541327|25|NZ_CP041587|CRT matches to NZ_CP032120 (Acinetobacter lwoffii strain ED45-23 plasmid pALWED2.5, complete sequence) position: , mismatch: 4, identity: 0.84

ccgtggccgcagtcgttatgatgat	CRISPR spacer
acgtggtcgcagtcgtgatgatgac	Protospacer
 *****.********* *******.

34. spacer 2.11|1541525|25|NZ_CP041587|CRT matches to MK291444 (Paracoccus phage vB_PthS_Pthi1, complete genome) position: , mismatch: 4, identity: 0.84

tcgtggccgcagccgtcgtgatgat	CRISPR spacer
ctgtggccgcggccgtcgtgatgac	Protospacer
..********.*************.

35. spacer 2.11|1541525|25|NZ_CP041587|CRT matches to NZ_CP015523 (Sphingomonas sp. NIC1 plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.84

tcgtggccgcagccgtcgtgatgat	CRISPR spacer
ccgaggccgcagccgtcgtgctgac	Protospacer
.** **************** ***.

36. spacer 2.11|1541525|25|NZ_CP041587|CRT matches to MN444870 (Gordonia phage Syleon, complete genome) position: , mismatch: 4, identity: 0.84

tcgtggccgcagccgtcgtgatgat	CRISPR spacer
acgtggccgcagccgtcgtcatcag	Protospacer
 ****************** ** *

37. spacer 2.11|1541525|25|NZ_CP041587|CRT matches to NZ_CP010684 (Phaeobacter piscinae strain P14 plasmid pP14_c, complete sequence) position: , mismatch: 4, identity: 0.84

tcgtggccgcagccgtcgtgatgat	CRISPR spacer
tcgtggccgcagccgtgatgatgtc	Protospacer
**************** .***** .

38. spacer 2.11|1541525|25|NZ_CP041587|CRT matches to NZ_CP010808 (Phaeobacter piscinae strain P23 plasmid pP23_c, complete sequence) position: , mismatch: 4, identity: 0.84

tcgtggccgcagccgtcgtgatgat	CRISPR spacer
tcgtggccgcagccgtgatgatgtc	Protospacer
**************** .***** .

39. spacer 2.11|1541525|25|NZ_CP041587|CRT matches to NZ_CP010646 (Phaeobacter piscinae strain P36 plasmid pP36_c, complete sequence) position: , mismatch: 4, identity: 0.84

tcgtggccgcagccgtcgtgatgat	CRISPR spacer
tcgtggccgcagccgtgatgatgtc	Protospacer
**************** .***** .

40. spacer 2.11|1541525|25|NZ_CP041587|CRT matches to NZ_CP010692 (Phaeobacter piscinae strain P42 plasmid pP42_c, complete sequence) position: , mismatch: 4, identity: 0.84

tcgtggccgcagccgtcgtgatgat	CRISPR spacer
tcgtggccgcagccgtgatgatgtc	Protospacer
**************** .***** .

41. spacer 2.12|1541591|25|NZ_CP041587|CRT matches to NZ_CP032120 (Acinetobacter lwoffii strain ED45-23 plasmid pALWED2.5, complete sequence) position: , mismatch: 4, identity: 0.84

ccgtggccgcagtcgttatgatgat	CRISPR spacer
acgtggtcgcagtcgtgatgatgac	Protospacer
 *****.********* *******.

42. spacer 2.5|1541135|25|NZ_CP041587|CRT matches to NC_010333 (Caulobacter sp. K31 plasmid pCAUL02, complete sequence) position: , mismatch: 5, identity: 0.8

tcgtggccgcagccgccgtgatgac	CRISPR spacer
ccgtggccgcagccaccgtgatcga	Protospacer
.*************.******* .

43. spacer 2.11|1541525|25|NZ_CP041587|CRT matches to NZ_CP021649 (Acidovorax sp. T1 plasmid p1-T1, complete sequence) position: , mismatch: 5, identity: 0.8

tcgtggccgcagccgtcgtgatgat	CRISPR spacer
cggtggccgcagccgtcgtgctggg	Protospacer
. ****************** **.

44. spacer 2.13|1541657|28|NZ_CP041587|CRT matches to MK291444 (Paracoccus phage vB_PthS_Pthi1, complete genome) position: , mismatch: 5, identity: 0.821

ccgtggtcgcagccgtcgtgatgacgat	CRISPR spacer
ctgtggccgcggccgtcgtgatgacgcg	Protospacer
*.****.***.***************

45. spacer 2.13|1541657|28|NZ_CP041587|CRT matches to NC_048792 (Serratia phage Moabite, complete genome) position: , mismatch: 6, identity: 0.786

ccgtggtcgcagccgtcgtgatgacgat	CRISPR spacer
tcgttatcgcagccgtcgtgatgaccgc	Protospacer
.*** .******************* ..

46. spacer 2.13|1541657|28|NZ_CP041587|CRT matches to NZ_CP012940 (Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.75

ccgtggtcgcagccgtcgtgatgacgat	CRISPR spacer
ggctgatcgcagccgtcgtgctgacgcc	Protospacer
   **.************** ***** .

47. spacer 2.13|1541657|28|NZ_CP041587|CRT matches to NZ_CP012944 (Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.75

ccgtggtcgcagccgtcgtgatgacgat	CRISPR spacer
ggctgatcgcagccgtcgtgctgacgcc	Protospacer
   **.************** ***** .

48. spacer 2.13|1541657|28|NZ_CP041587|CRT matches to NZ_CP051295 (Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence) position: , mismatch: 7, identity: 0.75

ccgtggtcgcagccgtcgtgatgacgat	CRISPR spacer
ggctgatcgcagccgtcgtgctgacgcc	Protospacer
   **.************** ***** .

49. spacer 2.13|1541657|28|NZ_CP041587|CRT matches to MF285618 (Serratia phage 2050HW, complete genome) position: , mismatch: 7, identity: 0.75

ccgtggtcgcagccgtcgtgatgacgat	CRISPR spacer
tcgttatcgcagccgtcgtgatgatcgc	Protospacer
.*** .******************. ..

50. spacer 2.13|1541657|28|NZ_CP041587|CRT matches to NC_017575 (Ralstonia solanacearum Po82 megaplasmid, complete sequence) position: , mismatch: 7, identity: 0.75

ccgtggtcgcagccgtcgtgatgacgat	CRISPR spacer
ggctgatcgcagccgtcgtgctgacgcc	Protospacer
   **.************** ***** .

51. spacer 2.13|1541657|28|NZ_CP041587|CRT matches to NZ_CP026308 (Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.75

ccgtggtcgcagccgtcgtgatgacgat	CRISPR spacer
ggctgatcgcagccgtcgtgctgacgcc	Protospacer
   **.************** ***** .

52. spacer 1.22|987114|37|NZ_CP041587|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP049808 (Acinetobacter pittii strain A1254 plasmid pA1254_2, complete sequence) position: , mismatch: 8, identity: 0.784

cgaaccggtataactacttgagcacgttcaccagttg	CRISPR spacer
gctggcggtataactacttgagcacgctcgccagtag	Protospacer
   . *********************.**.***** *

53. spacer 2.10|1541453|31|NZ_CP041587|CRT matches to NZ_CP029209 (Nitratireductor sp. OM-1 plasmid pOM-1, complete sequence) position: , mismatch: 8, identity: 0.742

ccgaggccgtggccgcagtcgttatgatgac	CRISPR spacer
aatggggcgtggccgcagccgttatgatggt	Protospacer
   .** ***********.**********..

54. spacer 2.10|1541453|31|NZ_CP041587|CRT matches to NZ_CP054035 (Rhizobium sp. JKLM13E plasmid pPR13E04, complete sequence) position: , mismatch: 9, identity: 0.71

ccgaggccgtggccgcagtcgttatgatgac	CRISPR spacer
ccgaggcgttggccgcagtcgttgcagcgtt	Protospacer
*******  **************.....* .

55. spacer 2.10|1541453|31|NZ_CP041587|CRT matches to NZ_CP054024 (Rhizobium sp. JKLM12A2 plasmid pPR12A203, complete sequence) position: , mismatch: 9, identity: 0.71

ccgaggccgtggccgcagtcgttatgatgac	CRISPR spacer
ccgaggcgttggccgcagtcgttgcagcgtt	Protospacer
*******  **************.....* .

56. spacer 1.8|986274|37|NZ_CP041587|CRT,CRISPRCasFinder matches to MT375042 (Acinetobacter phage vB_AbaP_Alexa, complete genome) position: , mismatch: 10, identity: 0.73

tgaacctgataatctttttgaccacgtccccgattgt	CRISPR spacer
gttcgctggcgatctttttgacgacgtcaccgattgt	Protospacer
     ***...*********** ***** ********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1137208 : 1180424

Acinetobacter_phage(76.6%)

tail,capsid,terminase,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000067521.1\|1137208_1138246_-	hypothetical protein	A0A0D4DBR8	Acinetobacter_phage	7.9e-83	53.3
WP_000206149.1\|1138260_1139028_-	hypothetical protein	NA	NA	NA	NA
WP_000181066.1\|1139039_1139363_-	hypothetical protein	A0A0P0IKP4	Acinetobacter_phage	5.9e-53	93.5
WP_001101024.1\|1139365_1139806_-	hypothetical protein	A0A0N7IRF7	Acinetobacter_phage	9.8e-75	97.3
WP_000360255.1\|1140003_1140198_+	hypothetical protein	NA	NA	NA	NA
WP_000506575.1\|1140194_1140713_-	hypothetical protein	NA	NA	NA	NA
WP_000370485.1\|1140763_1140979_-	hypothetical protein	A0A0P0IKK4	Acinetobacter_phage	9.4e-31	98.6
WP_000792745.1\|1140993_1141758_-	LexA family transcriptional regulator	J7I4M9	Acinetobacter_phage	2.3e-140	98.0
WP_000165919.1\|1141835_1142021_+	hypothetical protein	J7HXD2	Acinetobacter_phage	1.4e-27	98.4
WP_000041063.1\|1142030_1142387_+	hypothetical protein	J7I452	Acinetobacter_phage	8.8e-58	98.3
WP_001983238.1\|1142442_1142718_+	hypothetical protein	A0A0P0IVP2	Acinetobacter_phage	4.1e-39	95.6
WP_002037796.1\|1142789_1143014_+	hypothetical protein	A0A0P0I444	Acinetobacter_phage	6.5e-35	98.6
WP_000064624.1\|1143006_1143888_+	replication protein	A0A0P0IKQ2	Acinetobacter_phage	3.0e-139	95.6
WP_001003674.1\|1143890_1144691_+	hypothetical protein	A0A0P0IDV1	Acinetobacter_phage	1.0e-146	97.0
WP_000017854.1\|1144687_1145095_+	hypothetical protein	NA	NA	NA	NA
WP_000778990.1\|1145091_1145490_+	HNH endonuclease	K7P7B7	Enterobacteria_phage	1.3e-25	48.4
WP_000360558.1\|1145482_1145749_+	hypothetical protein	A0A1X9SFG4	Acinetobacter_phage	7.6e-06	39.3
WP_000100145.1\|1145748_1146150_+	DUF559 domain-containing protein	A0A0P0I8E8	Acinetobacter_phage	2.5e-61	89.2
WP_001277124.1\|1146146_1146623_+	hypothetical protein	A0A2H4J548	uncultured_Caudovirales_phage	2.4e-26	41.0
WP_000861102.1\|1146594_1146849_+	hypothetical protein	NA	NA	NA	NA
WP_001017700.1\|1147334_1147553_+	hypothetical protein	NA	NA	NA	NA
WP_111916288.1\|1147819_1148098_+	hypothetical protein	NA	NA	NA	NA
WP_008302424.1\|1148105_1149038_-\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	3.9e-57	40.5
WP_143213415.1\|1149049_1149460_+	hypothetical protein	A0A0P0HSF5	Acinetobacter_phage	3.4e-61	85.1
WP_000378513.1\|1149520_1149988_+	hypothetical protein	A0A0P0IRI6	Acinetobacter_phage	7.4e-65	78.1
WP_000372130.1\|1149956_1150598_+	hypothetical protein	J7I4N9	Acinetobacter_phage	1.3e-123	97.7
WP_000729379.1\|1150656_1151178_+	DUF2280 domain-containing protein	A0A1B1P9C2	Acinetobacter_phage	1.5e-58	64.7
WP_029641956.1\|1151137_1152430_+\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	1.6e-213	85.5
WP_000301504.1\|1152469_1153810_+	DUF4055 domain-containing protein	A0A0P0IDW1	Acinetobacter_phage	8.3e-234	91.3
WP_000146955.1\|1153819_1154926_+\|capsid	minor capsid protein	A0A0P0IR98	Acinetobacter_phage	3.3e-188	89.9
WP_000056388.1\|1155111_1155903_+	hypothetical protein	A0A0P0J090	Acinetobacter_phage	2.3e-90	73.0
WP_000852266.1\|1155916_1156867_+	hypothetical protein	A0A0P0HSG2	Acinetobacter_phage	2.4e-171	94.6
WP_000524484.1\|1156911_1157247_+	hypothetical protein	A0A0N7IRE4	Acinetobacter_phage	3.0e-52	97.3
WP_000505832.1\|1157250_1157631_+	hypothetical protein	A0A0P0IVQ3	Acinetobacter_phage	5.3e-53	84.9
WP_002064246.1\|1157630_1157981_+	hypothetical protein	A0A0P0I456	Acinetobacter_phage	2.1e-48	90.5
WP_001284678.1\|1159322_1159985_+	hypothetical protein	NA	NA	NA	NA
WP_000626004.1\|1160052_1160466_+	hypothetical protein	A0A0P0IKR8	Acinetobacter_phage	6.2e-63	88.1
WP_001983390.1\|1160431_1160800_+	hypothetical protein	A0A0D4DBN1	Acinetobacter_phage	5.1e-53	81.1
WP_074163943.1\|1160756_1161200_+	hypothetical protein	A0A0D4DBX3	Acinetobacter_phage	7.8e-64	77.6
WP_001983388.1\|1161201_1161414_+	hypothetical protein	A0A0P0I8C2	Acinetobacter_phage	6.0e-22	78.3
WP_000094301.1\|1161521_1162451_+	hypothetical protein	A0A059VG08	Pseudomonas_phage	8.2e-55	41.0
WP_001185623.1\|1162495_1163029_+	hypothetical protein	A0A0N7IRG3	Acinetobacter_phage	6.3e-44	59.9
WP_000838150.1\|1163360_1163543_+	type II toxin-antitoxin system HicA family toxin	A0A0D4DC32	Acinetobacter_phage	1.7e-25	90.0
WP_000966685.1\|1163607_1164012_+	type II toxin-antitoxin system HicB family antitoxin	A0A0D4DCG1	Acinetobacter_phage	7.3e-69	97.0
WP_001983384.1\|1164110_1164287_+	hypothetical protein	A0A0R6PIB1	Moraxella_phage	8.2e-09	59.6
WP_000523922.1\|1164295_1164619_+	DUF4236 domain-containing protein	NA	NA	NA	NA
WP_000719143.1\|1164652_1165186_+	hypothetical protein	NA	NA	NA	NA
WP_000758223.1\|1165197_1165599_+	hypothetical protein	NA	NA	NA	NA
WP_094941207.1\|1165657_1169824_+	tape measure protein	A0A220VZA0	Acinetobacter_phage	0.0e+00	66.6
WP_000536302.1\|1169911_1170184_+	hypothetical protein	NA	NA	NA	NA
WP_000644426.1\|1170241_1170568_+	hypothetical protein	NA	NA	NA	NA
WP_000012519.1\|1170577_1170943_+	hypothetical protein	NA	NA	NA	NA
WP_000067280.1\|1170929_1171274_+\|tail	phage tail protein	A0A0R6PHH7	Moraxella_phage	1.1e-12	42.2
WP_000155326.1\|1171326_1172160_+	hypothetical protein	G3ENB2	Psychrobacter_phage	1.6e-49	42.8
WP_000174378.1\|1172146_1172953_+\|tail	phage minor tail protein L	A0A0R6PGU8	Moraxella_phage	2.7e-94	64.6
WP_000778486.1\|1172959_1173715_+	C40 family peptidase	A0A0R6PIM4	Moraxella_phage	1.7e-82	55.0
WP_000920723.1\|1173698_1174367_+\|tail	tail assembly protein	A0A0R6PIW1	Moraxella_phage	7.9e-44	49.8
WP_000994929.1\|1174423_1178824_+	host specificity protein J	A0A0R6PIC9	Moraxella_phage	0.0e+00	65.3
WP_000970243.1\|1178820_1179381_+	DUF4376 domain-containing protein	A0A172Q0F8	Acinetobacter_phage	2.8e-26	44.7
WP_000433922.1\|1179446_1179836_+	hypothetical protein	J7I481	Acinetobacter_phage	2.1e-65	97.7
WP_001019700.1\|1179878_1180424_+	glycoside hydrolase family 108 protein	A0A0B5L5G0	Acinetobacter_phage	8.3e-92	89.9

DBSCAN-SWA_2

2656977 : 2671775

Acinetobacter_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000566784.1\|2656977_2657553_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	3.2e-110	100.0
WP_001189813.1\|2657649_2660415_-	M1 family metallopeptidase	A0A0P0IY26	Acinetobacter_phage	0.0e+00	97.9
WP_000281152.1\|2660428_2663161_-	TonB-dependent receptor	A0A0P0I887	Acinetobacter_phage	0.0e+00	98.4
WP_001982145.1\|2663516_2664566_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	9.8e-190	100.0
WP_000608313.1\|2664575_2665382_+	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	2.5e-145	98.9
WP_000066125.1\|2665391_2666087_+	Smr/MutS family protein	A0A0P0IDT4	Acinetobacter_phage	4.9e-121	99.1
WP_001164247.1\|2666097_2667081_-	xanthine dehydrogenase accessory protein XdhC	A0A0P0IKN7	Acinetobacter_phage	4.7e-186	97.9
WP_001076806.1\|2667087_2669463_-	xanthine dehydrogenase molybdopterin binding subunit	A0A0P0I429	Acinetobacter_phage	0.0e+00	98.5
WP_000893685.1\|2669464_2670964_-	xanthine dehydrogenase small subunit	A0A0P0IVM8	Acinetobacter_phage	6.1e-278	96.8
WP_001187844.1\|2671226_2671775_+	GTP cyclohydrolase I FolE	A0A0P0HSD2	Acinetobacter_phage	1.7e-97	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP041590

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

21529 : 83947

Pseudomonas_phage(30.77%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_114149100.1\|21529_22855_+	hypothetical protein	J9Q7Z2	Salmonella_phage	1.1e-113	51.2
WP_000432851.1\|22903_23095_+	hypothetical protein	NA	NA	NA	NA
WP_000695255.1\|23084_24350_+	hypothetical protein	A0A2H4P750	Pseudomonas_phage	1.5e-72	38.4
WP_000034356.1\|24439_25528_+	hypothetical protein	A0A2H4P749	Pseudomonas_phage	5.0e-11	35.3
WP_001099771.1\|25670_26531_+	hypothetical protein	A0A2H4P7I7	Pseudomonas_phage	1.9e-29	31.5
WP_000429228.1\|26593_27631_+	hypothetical protein	J9Q7S6	Salmonella_phage	2.3e-50	36.9
WP_005137870.1\|27633_29835_+	hypothetical protein	J9Q736	Salmonella_phage	3.6e-53	50.7
WP_000680035.1\|29919_30279_+	hypothetical protein	NA	NA	NA	NA
WP_000095727.1\|30275_30737_+	hypothetical protein	NA	NA	NA	NA
WP_000234226.1\|30736_31117_+	hypothetical protein	NA	NA	NA	NA
WP_002027139.1\|31204_31426_+	hypothetical protein	NA	NA	NA	NA
WP_031956522.1\|31459_32575_+	metallophosphoesterase	A0A2H4P756	Pseudomonas_phage	1.7e-59	38.1
WP_000698007.1\|32574_34515_+	AAA family ATPase	L7TNH6	Rhizobium_phage	2.9e-118	42.5
WP_000192217.1\|34606_35443_+	hypothetical protein	NA	NA	NA	NA
WP_000692603.1\|35574_36177_+	hypothetical protein	J9Q7Z7	Salmonella_phage	1.8e-31	42.8
WP_000030997.1\|36250_36631_+	hypothetical protein	NA	NA	NA	NA
WP_001103333.1\|36652_39025_+	ribonucleoside-diphosphate reductase subunit alpha	A0A2H4P767	Pseudomonas_phage	1.5e-206	50.7
WP_031944763.1\|39122_40112_+	ribonucleotide-diphosphate reductase subunit beta	A0A2H4P762	Pseudomonas_phage	7.1e-57	39.6
WP_000705250.1\|40124_41036_+	hypothetical protein	A0A0K2FHE7	Achromobacter_phage	2.6e-66	44.8
WP_001019929.1\|41039_41324_+	hypothetical protein	NA	NA	NA	NA
WP_000047654.1\|41323_41551_+	hypothetical protein	NA	NA	NA	NA
WP_000178935.1\|41581_41839_+	hypothetical protein	NA	NA	NA	NA
WP_000168233.1\|41831_42197_+	nucleoside triphosphate pyrophosphohydrolase family protein	A0A0S0NAG1	Pseudomonas_phage	1.4e-34	61.9
WP_001982274.1\|42193_42361_+	AAA family ATPase	NA	NA	NA	NA
WP_001067790.1\|42388_43093_-\|transposase	IS6-like element IS1008 family transposase	A0A077SL39	Escherichia_phage	5.1e-118	84.5
WP_001445143.1\|44017_44269_+	hypothetical protein	NA	NA	NA	NA
WP_000251875.1\|44162_44465_-	phosphoglucosamine mutase	NA	NA	NA	NA
WP_001043260.1\|44551_45367_-	sulfonamide-resistant dihydropteroate synthase Sul2	A0A0B5J4J5	Pandoravirus	5.9e-09	27.6
WP_085947913.1\|45456_46546_+\|transposase	IS4 family transposase ISAba1	NA	NA	NA	NA
WP_000613548.1\|47099_47639_+	3'-5' exonuclease	J9Q6J8	Salmonella_phage	8.9e-38	48.9
WP_001080572.1\|47874_48195_+	hypothetical protein	NA	NA	NA	NA
WP_000698342.1\|48935_49712_+	hypothetical protein	NA	NA	NA	NA
WP_000582283.1\|49765_50188_+	hypothetical protein	NA	NA	NA	NA
WP_000033718.1\|50180_50465_+	hypothetical protein	NA	NA	NA	NA
WP_000135195.1\|50464_50977_+	hypothetical protein	NA	NA	NA	NA
WP_000991897.1\|51109_51973_+	hypothetical protein	A0A2H4P788	Pseudomonas_phage	1.1e-08	24.8
WP_005130202.1\|52748_54317_+	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	4.4e-162	56.0
WP_005130204.1\|54316_55501_+	restriction endonuclease subunit S	A0A2H4PQP5	Staphylococcus_phage	9.5e-16	27.2
WP_001177806.1\|55510_56422_+	hypothetical protein	NA	NA	NA	NA
WP_000218114.1\|56450_59330_+	type I restriction endonuclease subunit R	NA	NA	NA	NA
WP_001037834.1\|60425_61073_+	hypothetical protein	NA	NA	NA	NA
WP_025464595.1\|61029_61221_-	hypothetical protein	NA	NA	NA	NA
WP_000119273.1\|61470_61716_+	hypothetical protein	NA	NA	NA	NA
WP_000495140.1\|61949_62276_+	hypothetical protein	NA	NA	NA	NA
WP_000074834.1\|62291_63032_+	hypothetical protein	J9Q7Y8	Salmonella_phage	3.6e-13	25.9
WP_023897590.1\|63088_63337_-	hypothetical protein	A0A0M3LSW2	Mannheimia_phage	1.3e-07	44.8
WP_008302424.1\|63455_64388_-\|transposase	IS5 family transposase	A0A1V0E8E1	Vibrio_phage	3.1e-62	42.9
WP_005005740.1\|64886_70112_+	AAA family ATPase	NA	NA	NA	NA
WP_005005738.1\|70115_71492_+	hypothetical protein	NA	NA	NA	NA
WP_143213426.1\|71637_72570_-\|transposase	IS5 family transposase	A0A1V0E8E1	Vibrio_phage	3.1e-62	42.9
WP_005028412.1\|72715_73042_+	hypothetical protein	NA	NA	NA	NA
WP_005006362.1\|74437_74938_-	Mov34/MPN/PAD-1 family protein	NA	NA	NA	NA
WP_005006360.1\|74922_76581_-	ThiF family adenylyltransferase	NA	NA	NA	NA
WP_005006358.1\|76590_77604_-	nucleotidyltransferase	NA	NA	NA	NA
WP_006581699.1\|78310_78877_+	recombinase family protein	Q2A092	Sodalis_phage	1.8e-28	41.6
WP_000214119.1\|80183_81398_+	chloramphenicol/florfenicol efflux MFS transporter FloR	S4TR35	Salmonella_phage	4.2e-19	28.7
WP_077170324.1\|81425_81692_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_005028420.1\|81727_82432_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	1.8e-118	84.9
WP_085940413.1\|82857_83947_+\|transposase	IS4 family transposase ISAba1	NA	NA	NA	NA

DBSCAN-SWA_2

104551 : 121256

Rhizobium_phage(33.33%)

terminase,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000521252.1\|104551_106261_-	DEAD/DEAH box helicase	L7TNS5	Rhizobium_phage	4.4e-131	46.2
WP_000110211.1\|106339_106978_+	ParB N-terminal domain-containing protein	L7TL04	Rhizobium_phage	1.0e-48	46.1
WP_000131110.1\|107006_107609_+	hypothetical protein	NA	NA	NA	NA
WP_001292430.1\|107605_108256_+	ParB N-terminal domain-containing protein	L7TMF9	Rhizobium_phage	3.8e-35	41.9
WP_000312034.1\|108255_108912_+	ATP-binding cassette domain-containing protein	L7TNS9	Rhizobium_phage	5.9e-60	54.8
WP_000184980.1\|108908_109331_+	thioredoxin family protein	NA	NA	NA	NA
WP_000416809.1\|109369_110323_+	hypothetical protein	A0A2H4P6X5	Pseudomonas_phage	4.6e-61	42.1
WP_111916322.1\|110313_110637_+	hypothetical protein	NA	NA	NA	NA
WP_005113862.1\|110605_111100_+	hypothetical protein	A0A0D4DBK8	Acinetobacter_phage	7.0e-05	33.0
WP_000084570.1\|111211_111613_+	hypothetical protein	NA	NA	NA	NA
WP_000134192.1\|111765_112371_+	hypothetical protein	J9Q6D4	Salmonella_phage	4.0e-18	34.3
WP_000764108.1\|112380_113625_+\|terminase	terminase	A0A2H4P6Z9	Pseudomonas_phage	1.3e-151	62.4
WP_000206081.1\|113670_115341_+\|portal	phage portal protein	J9Q7R1	Salmonella_phage	8.1e-146	51.9
WP_001131897.1\|115384_116263_+	hypothetical protein	A0A2H4P6Z8	Pseudomonas_phage	9.5e-13	29.4
WP_001130341.1\|116398_117301_+	hypothetical protein	A0A2H4P701	Pseudomonas_phage	6.9e-91	58.3
WP_000769020.1\|117440_117935_+	hypothetical protein	L7TKJ9	Rhizobium_phage	6.8e-08	28.7
WP_001110364.1\|117941_118712_+	hypothetical protein	NA	NA	NA	NA
WP_171479296.1\|118713_119409_+	hypothetical protein	NA	NA	NA	NA
WP_000494964.1\|119395_119746_+	hypothetical protein	J9Q7F6	Salmonella_phage	2.5e-09	35.1
WP_001068665.1\|119742_120129_+	hypothetical protein	J9Q6D8	Salmonella_phage	1.2e-12	32.8
WP_000101578.1\|120128_120626_+	HK97 gp10 family phage protein	NA	NA	NA	NA
WP_000002670.1\|120710_121256_+	hypothetical protein	A0A2H4P707	Pseudomonas_phage	6.3e-39	52.2

DBSCAN-SWA_3

127730 : 144062

Salmonella_phage(42.86%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000394500.1\|127730_128057_+\|tail	phage tail protein	D6PGG4	uncultured_phage	4.5e-08	30.1
WP_000504181.1\|128056_128752_+\|tail	phage minor tail protein L	J9Q7Y5	Salmonella_phage	2.8e-60	48.0
WP_000567461.1\|128748_129498_+	C40 family peptidase	J9Q7R4	Salmonella_phage	6.0e-48	40.5
WP_000959559.1\|129491_130070_+\|tail	tail assembly protein	J9Q7F8	Salmonella_phage	1.1e-25	36.1
WP_000992025.1\|130093_141322_+	hypothetical protein	A4JX16	Burkholderia_virus	9.9e-155	36.4
WP_001262279.1\|141322_141637_+	hypothetical protein	NA	NA	NA	NA
WP_001121316.1\|141650_142385_+	hypothetical protein	NA	NA	NA	NA
WP_000281051.1\|142394_142646_+	hypothetical protein	NA	NA	NA	NA
WP_001185528.1\|142704_142908_-	hypothetical protein	NA	NA	NA	NA
WP_000138815.1\|143031_143424_+	hypothetical protein	A0A0P0I8L9	Acinetobacter_phage	1.1e-32	55.5
WP_000097414.1\|143423_144062_+	lysozyme	A0A075DXC6	Acinetobacter_phage	3.7e-67	63.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP041587

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP041590

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection