CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP040363	Klebsiella pneumoniae strain R50 chromosome, complete genome	4 crisprs	WYL,DEDDh,cas3,csa3,DinG	0	0	6	0
NZ_CP040362	Klebsiella pneumoniae strain R50 plasmid pR50-74, complete sequence	0 crisprs	RT	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP040363_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040363_1

644886-645160

Orphan

Consensus_repeat	Method
ACGGAGCCGCTTTTTTGCCGGGTGGCGGCTGCGCCTTACCCGGCCTACAGGG	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP040363_1

>merge|NZ_CP040363|1|644886-645160|PILER-CR
GCCGATATTTCGCCGGGTGGCGGCTGCGCCTTACCCGGCCTACAGGGCCCTCTCACAGGCTGACACATCGTAGGCCCGGTAAGCGCAGCGCCACCGGGCGATGCCATCAGGCACGGAGCCGCTTTATTGCCGGGTGGCGGCTGCGCCTTACCCGGCCTACTCGTCCGGCTCCGACTGTCTGTAGGCCCGGCAAGCGCAGCGCCGCCGGGCGATGGCATCAGGTACGGAGCTGCTTTTATGCCGGGTGGCGGCTGCGCCTTACCCGGCCTACAGGG

>NZ_CP040363|1|1|644886-645160|PILER-CR
GCCGATATTTCGCCGGGTGGCGGCTGCGCCTTACCCGGCCTACAGGGCCCTC	TCACAGGCTGACACATCGTAGGCCCGGTAAGCGCAGCGCCACCGGGCGATGCCATCAGGCACGGA
GCCGCTTTATTGCCGGGTGGCGGCTGCGCCTTACCCGGCCTACTCGTCCGGC	TCCGACTGTCTGTAGGCCCGGCAAGCGCAGCGCCGCCGGGCGATGGCATCAGGTACGGAGCTG
CTTTTATGCCGGGTGGCGGCTGCGCCTTACCCGGCCTACAGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040363.1\|WP_002890061.1\|633092_633803_-\|fimbria/pilus-periplasmic-chaperone	unknown	unknown	gnl\|CDD\|225663
NZ_CP040363.1\|WP_040089179.1\|654131_654566_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040363.1\|WP_004144585.1\|639344_639887_-\|LuxR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|99777
NZ_CP040363.1\|WP_004144586.1\|637955_638624_-\|fimbrial-chaperone-EcpB	unknown	unknown	gnl\|CDD\|376075
NZ_CP040363.1\|WP_002890003.1\|640734_641577_+\|phosphonate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226164
NZ_CP040363.1\|WP_012542740.1\|645217_645883_-\|HAD-IB-family-hydrolase	unknown	unknown	gnl\|CDD\|319796
NZ_CP040363.1\|WP_117074114.1\|641599_642538_+\|phosphonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|132472
NZ_CP040363.1\|WP_004147253.1\|650327_651581_+\|glutamate-5-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|234685
NZ_CP040363.1\|WP_002890001.1\|642604_643477_+\|phosphonate-ABC-transporter,-permease-protein-PhnE	unknown	unknown	gnl\|CDD\|273441
NZ_CP040363.1\|WP_004144574.1\|649213_650317_+\|glutamate-5-kinase	unknown	unknown	gnl\|CDD\|235460
NZ_CP040363.1\|WP_032419365.1\|645978_646848_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|183067
NZ_CP040363.1\|WP_048968636.1\|633771_635415_-\|fimbrial-adhesin-EcpD	unknown	unknown	unknown
NZ_CP040363.1\|WP_048968637.1\|635404_637930_-\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|374266
NZ_CP040363.1\|WP_142778369.1\|653435_653993_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271192
NZ_CP040363.1\|WP_040215677.1\|643473_644358_+\|phosphonate-ABC-transporter,-permease-protein-PhnE	unknown	unknown	gnl\|CDD\|273441
NZ_CP040363.1\|WP_004144576.1\|647871_648924_-\|phosphoporin-PhoE	unknown	unknown	gnl\|CDD\|182275
NZ_CP040363.1\|WP_064114713.1\|653227_653434_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040363.1\|WP_142778368.1\|638682_639270_-\|common-pilus-major-fimbrillin-subunit-EcpA	unknown	unknown	gnl\|CDD\|374549
NZ_CP040363.1\|WP_071579820.1\|646851_647163_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040363.1\|WP_004191825.1\|647260_647827_+\|lipoprotein	unknown	unknown	gnl\|CDD\|236773

Protein	Function_ID	Function_description	E-value
NZ_CP040363.1\|WP_002890061.1\|633092_633803_-\|fimbria/pilus-periplasmic-chaperone	gnl\|CDD\|225663	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion].	0.00306804
NZ_CP040363.1\|WP_004144585.1\|639344_639887_-\|LuxR-family-transcriptional-regulator	gnl\|CDD\|99777	cd06170, LuxR_C_like, C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many are active as homodimers. Many are two domain proteins in which the DNA binding property of the C-terminal DNA binding domain is modulated by modifications of the N-terminal domain. For example in the case of Lux R which participates in the regulation of gene expression in response to fluctuations in cell-population density (quorum-sensing), a signaling molecule, the pheromone Acyl HSL (N-acyl derivatives of homoserine lactone), binds to the N-terminal domain and leads to LuxR dimerization. For others phophorylation of the N-terminal domain leads to multimerization, for example Escherichia coli NarL and Sinorhizobium melilot FixJ. NarL controls gene expression of many respiratory-related operons when environmental nitrate or nitrite is present under anerobic conditions. FixJ is involved in the transcriptional activation of nitrogen fixation genes. The group also includes small proteins which lack an N-terminal signaling domain, such as Bacillus subtilis GerE. GerE is dimeric and acts in conjunction with sigmaK as an activator or a repressor modulating the expression of various genes in particular those encoding the spore-coat. These LuxR family regulators may share a similar organization of their target binding sites. For example the LuxR dimer binds the lux box, a 20bp inverted repeat, GerE dimers bind two 12bp consensus sequences in inverted orientation having the central four bases overlap, and the NarL dimer binds two 7bp inverted repeats separated by 2 bp.	1.31182e-09
NZ_CP040363.1\|WP_004144586.1\|637955_638624_-\|fimbrial-chaperone-EcpB	gnl\|CDD\|376075	pfam18649, EcpB_C, EcpB C-terminal domain. This is an immunoglobulin like domain found at the C-terminal region of EcpB. It is a periplasmic chaperone which along with EcpE help assemble the E. coli common pilus (ECP) EcpA and EcpD subunits. The C-terminal domain is predicted to contain residues that might be involved in binding a C-terminal carboxylate anchor.	3.03914e-43
NZ_CP040363.1\|WP_002890003.1\|640734_641577_+\|phosphonate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|226164	COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism].	1.60516e-118
NZ_CP040363.1\|WP_012542740.1\|645217_645883_-\|HAD-IB-family-hydrolase	gnl\|CDD\|319796	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C. This family includes Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C, PgpC (previously named yfhB) which catalyzes the dephosphorylation of phosphatidylglycerol-phosphate (PGP) to phosphatidylglycerol (PG). This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	3.08261e-68
NZ_CP040363.1\|WP_117074114.1\|641599_642538_+\|phosphonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|132472	TIGR03431, PhnD, phosphonate ABC transporter, periplasmic phosphonate binding protein. This model is a subset of the broader subfamily of phosphate/phosphonate binding protein ABC transporter components, TIGR01098. In this model all members of the seed have support from genomic context for association with pathways for the metabolims of phosphonates, particularly the C-P lyase system, GenProp0232. This model includes the characterized phnD gene from E. coli. Note that this model does not identify all phnD-subfamily genes with evident phosphonate context, but all sequences above the trusted context may be inferred to bind phosphonate compounds even in the absence of such context. Furthermore, there is ample evidence to suggest that many other members of the TIGR01098 subfamily have a different primary function.	4.83199e-101
NZ_CP040363.1\|WP_002890001.1\|642604_643477_+\|phosphonate-ABC-transporter,-permease-protein-PhnE	gnl\|CDD\|273441	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE. Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions].	1.26081e-91
NZ_CP040363.1\|WP_004144574.1\|649213_650317_+\|glutamate-5-kinase	gnl\|CDD\|235460	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional.	0
NZ_CP040363.1\|WP_032419365.1\|645978_646848_-\|DMT-family-transporter	gnl\|CDD\|183067	PRK11272, PRK11272, putative DMT superfamily transporter inner membrane protein; Provisional.	2.80872e-09
NZ_CP040363.1\|WP_048968637.1\|635404_637930_-\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|374266	pfam15976, CooC_C, CS1-pili formation C-terminal. CooC_C is a highly conserved C-terminal domain on fimbrial outer membrane usher proteins like TcfC. The protein is required for CS1 pilus formation.	2.89161e-32
NZ_CP040363.1\|WP_142778369.1\|653435_653993_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271192	cd01192, INT_C_like_3, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain. Tyrosine recombinase (integrase) belongs to a DNA breaking-rejoining enzyme superfamily. The catalytic domain contains six conserved active site residues. The recombination reaction involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	1.04871e-29
NZ_CP040363.1\|WP_040215677.1\|643473_644358_+\|phosphonate-ABC-transporter,-permease-protein-PhnE	gnl\|CDD\|273441	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE. Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions].	9.46114e-87
NZ_CP040363.1\|WP_004144576.1\|647871_648924_-\|phosphoporin-PhoE	gnl\|CDD\|182275	PRK10159, PRK10159, phosphoporin PhoE.	0
NZ_CP040363.1\|WP_142778368.1\|638682_639270_-\|common-pilus-major-fimbrillin-subunit-EcpA	gnl\|CDD\|374549	pfam16449, MatB, Fimbrillin MatB. This is a family of fimbrial proteins.	1.9272e-81
NZ_CP040363.1\|WP_004147253.1\|650327_651581_+\|glutamate-5-semialdehyde-dehydrogenase	gnl\|CDD\|234685	PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional.	0
NZ_CP040363.1\|WP_004191825.1\|647260_647827_+\|lipoprotein	gnl\|CDD\|236773	PRK10838, spr, bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase.	1.48184e-38

>NZ_CP040363.1|WP_040215677.1|643473_644358_+|phosphonate-ABC-transporter,-permease-protein-PhnE
MSVWHMQPDLAASRRQHKQLYQVQGRYLLYVGLVALACLLYYVWFFLQFGISGEQLTTGLQQIGRYLARMFVWHDFWNWPFGYYFTQIGVTLAIVFAGTLTATVLALLLSFFAARNIMRGVVLGTLALLMRRLFDVLRGIDMAIWGLIFVRAVGLGPLAGVLAIIMQDTGLLGRLYAEGHEAVDRSPGRGLTAVGANGLQKHRFGIFTQSFPTFLALSLYQIESNTRSAAVLGFVGAGGIGLIYAENMRLWNWDVVMFITLLLVAVVMIMDTLSAWLRRRYIGGAVVPLYQDKR
>NZ_CP040363.1|WP_002890001.1|642604_643477_+|phosphonate-ABC-transporter,-permease-protein-PhnE
MKTTHTEFERYYQQVRSRQKRDAVCWSLLLLALYFAAGSAAEFNLLTIWHSLPHFFDYMAETIPPLSAGNLFADVQTKGSLAWWGYRLPIQLPLIWETLQLALASTLVAVAIATVFAFLAANNAWSPAPVRFAIRVLVAFLRTMPELAWAVIFVMAFGIGAIPGFLALMLHTVGSLTKLFYEAVESAQNKPVRGLAACGASPLQKIRFALWPQVKPLFLSYGFMRLEINFRSSTILGLVGAGGIGQELMTNIKLDRYDQVSITLLLIILVVSALDMLSGRLRLWVLEGKK
>NZ_CP040363.1|WP_117074114.1|641599_642538_+|phosphonate-ABC-transporter-substrate-binding-protein
MKKYMTGAVRLSAMVAGMMMAWQAAAAQPKELNLGILGGQNATQQIGDNQCVKAFLDKELNVDTKLRNSSDYSGVIQGLLGGKVDVVLSMSPSSYASVYLNNPKAVDIVGIAVDDKDQSRGYHSVVIVKADSPYKTLDDLKGKAFGFADPDSTSGYLIPNHAFKEKFGGNADNKYNNTFSSVTFSGGHEQDILGVLNGQFAGAVTWASMVGDYNTGYTTGAFNRLIRMDHPDLMKQIRIIWQSPLIPNGPILVSNALPADFKVKVVAAVKKLDTEDHACFIKAMGGTQHIGPGSVADFQQIIDMKRELVSAR
>NZ_CP040363.1|WP_002890003.1|640734_641577_+|phosphonate-ABC-transporter-ATP-binding-protein
MNSSLAAVAETDFQPFTDPAAGRQRKVLSVRNLSKAYQAQHKVLDGISFDLHAGEMVGVIGRSGAGKSTLLHVLNGTHSASGGEILSYPEVGTPHDVSQLKGRALNAWRSHCGMIFQDFCLVPRLDVLTNVLLGRLSQTSTLKSLFKIFPAADRARAIALLEWMNMLPHALQRAENLSGGQMQRVAICRALMQNPGILLADEPVASLDPKNTQRIMDVLREISEQGISVMVNLHSVELVRAYCTRVIGVASGQLIFDDHPSRLTQDVLQRLYGDEVSQLH
>NZ_CP040363.1|WP_004144585.1|639344_639887_-|LuxR-family-transcriptional-regulator
MEYKSCSDKYIWSADDSYFYKGLSELIVDIDELIYLSLEKIRKDFVFINLNTASLNEFIRRDSEWLSAVKGKQVVLIAARKSEALANYWYYNSDIRGVVYVGLSRDIRKELAYVINGRFLRKDIKKDKITDREMKIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSKIYKLVQ
>NZ_CP040363.1|WP_142778368.1|638682_639270_-|common-pilus-major-fimbrillin-subunit-EcpA
MKKKVLAIALVTAFTGMGVAQAADVTAQAVATWSATAKKDTTSKLVVTPLGSLAFQYAEGIKGFNSQKGLFDVAIEGDTTATAFKLTSRLITNTLTQLDTPGSTLSVGVDYNGAAVEKTGDTVMIDTANNIMGGNLSALANGYNASGRTTAQDGFTFSIISGTTNGTTAVTDYSTLPEGIWSGDVSVQFDATWTS
>NZ_CP040363.1|WP_004144586.1|637955_638624_-|fimbrial-chaperone-EcpB
MKKHLLALGLLLAGVSPAQALDVGDISSFMNSGSSTLSKTIKNSTDSGRLINIHLERLSSPLDGGQVIPMDKPDEVLLTPASLLLPAQASDVIRFFYKGPADDKERYYRIVWFDQALSDAQRDNANRSAVATASARIGTILVVAPRQVNYRFQYANGSLTNTGNATLRILAYGPCLKAADGKECKENYYLMPGKSRRFTRVDTADKKGRVALWQGEQFVPVK
>NZ_CP040363.1|WP_048968637.1|635404_637930_-|fimbrial-biogenesis-outer-membrane-usher-protein
MPLRRITPGLKTRLAFGMIFLFVQPDVSAAAPGVQQIGGVIIPQAFSQALQDGMSVPLYIHLAGSQGIRDDQRIGSAFIWLDGGQLRVRQIQLEESEGNASVSEQTRLQLIGLANAPFSEALTIPLTDSAQLDLSLRQLLLQLVVKREALGTVLRSRSEDIGQSSVNALSSNLSYNLGVYNNQMRNGGSNTSSYLSLNNVTALREHHVVLDGSLYGIGSGQQDSELYKAMYERDFAGHRFAGGMLDTWNLQSLGPMTAISAGKIYGLSWGNQASSTVFDNSQSATPVIAFLPAAGEVHLTRDGRLLSVQNFAMGNHEVDTRGLPYGIYDVEVEVIVNGRVVSKRTQRVNKLFSRGRGAGAPLAWQVWGGSFHMDRWSESGKKTRPAKESWLAGLSASGSLSTLSWAATGYGYDNQAVGETRLTLPLGESINVNLQNMLASDSSWSSVGSISATLPGGFSSVWVNQERTRIGDQLRRSDADNRAIGGTLNLNALWSKLGTFSVSYNDDRRYNSHYYTADYYQTVYSGAFGSLGLRAGIQRYNNGDSSANTGKYIALDLSLPLGNWFSAGMTHQNGYTMANLSARKQFDEGTIRTIGANLSRAISGDTGDDKTLSGGAYAQFDARYASGTLNVNSAADGYVNTNLTASGSVGWQGKNIAASGRTDGNAGVIFNTGLEDDGQISARVNGRIFPLSGKRNYLPLSPYGRYEVELQNSKNSLDSYDIVSGRKSHLTLYPGNVAVIEPEVKQMVTVSGRIRAEDGTLLANARINNHIGRTRTDENGEFVMDVDKKYPTIDFSYGGNKTCEVALELSQARGAVWVGDVVCSGLSSWAAVQQSGEENES
>NZ_CP040363.1|WP_048968636.1|633771_635415_-|fimbrial-adhesin-EcpD
MKVNALMALAILALLWPVAALRAAVTKTTWSDAPAREFVFVENNSDDNFFVTPGGALDPRMTGANRWTGLKYTGSGTIYQQSLGYIDNGYNTGLNANWKFDMWLENSPVSHPLTGLRCINWYAGCDMATSLILPQTTDASGFYGATVTSGGAKWMHGMMSDAFYQYLQQMPVGGSFTMTINACQTSVNYDASSGARCKDQASGNWYVRNVTHTKAANLRLINTHSLAEVFINSDGVPTLGEGNADCRTQTIGSRSGLSCKMVNYTLQTNGLSNASIHIFPAIANSSLASAVGAYDMQFSLNGSSWKPVSNTAYYYTFNEMKSSDSIYVFFSSNFFKQMVNLGISDINTKDLFNFRFQNTTSPESGWYEFSTSNTLIIKPRDFSISIISDEYTSAPSREGYVGSGEPALDFGYIVTTSGKTAADEVLIKVTGPAQVIGGRSYCLFSSDDGTAKVPFPATLSFITRSGTTQTYDAGCDDSWRDMTDALWLTTPWTDISGEVGQMDKTTVKFSIPMDNAISLRTVDDNGWFGEVSASGEIHVQATWRNIN
>NZ_CP040363.1|WP_002890061.1|633092_633803_-|fimbria/pilus-periplasmic-chaperone
MSRRRGATLTKALLTVGCLLAAPLAQAISVGNLTFSLPAEADFASKRVVNNNKSARLYRIAVSAIDRPGGSEVRSRPVDGELLFAPRQLVLQAGESEYFKFYYHGPRDNRERYYRVSFREIPTRNLTRRSPTGGEVSMEPVVVMDTILVVRPREVQFKWSFDKVAGTVSNTGNTWFKLLIKPGCDSTEEEGDAWYLRPGDVVRQPALRQPGNHYLVYNDKFIKISDTCPLKPRPAE
>NZ_CP040363.1|WP_012542740.1|645217_645883_-|HAD-IB-family-hydrolase
MGNTLTIFDLDNTLIQGDSSTVWSQFMVREGLATQKGYLAREARLMADYDRGEMNIADYVALIQAPLAGIPKSDVDALVARCVREAILPRVYPQAWELIRRLRAEGEQMLIISASVSLLVQAVAAALEIDQALGIDVEMVDGGYSGVIAGIPSYQQGKVARLAQWREAHPQYDGEVTFYTDSINDLPLCLHADRVRLVNPCPQLQAAGAGYGWPVLSWRLE
>NZ_CP040363.1|WP_032419365.1|645978_646848_-|DMT-family-transporter
MHVRYSLLASQAATALFVLLWGSAAIFTRWGLDNASPMALLVFRFLVALVALAPLAIVRRRWLPAPGTRLQTAVTGLMLIGGYSVCYFEAMANGVTPGLIATIMGIQPILTLCVVERRLQGRRLSGLLLALAGLVLLVWRSLAASPMATVGILFALAALLLMTFGALWQKRSRQAPADVLPLQYAVSLGLCLLIAPVSGFQFTVNAGLIIPVLFLGLLISVVAQLLLYRLLSAGNIVNVTSLFYLVPAITALLDYLLLGNRLPAAAMIGMMAIVGGIVLVFRTAKVRAG
>NZ_CP040363.1|WP_071579820.1|646851_647163_+|hypothetical-protein
MLQNVKHKVSSVIPAGKRLLKTALSAENYPVWRGRRWAERGEAMMRRRRHPPRVESGAGQSLARDGVMRHGMPREMFLSASWHRPLRSDNCPLWLIQPEVVYF
>NZ_CP040363.1|WP_004191825.1|647260_647827_+|lipoprotein
MKPKLTHALFLIPFLLLAGCSSSPKQAKNTKSHADMTIDSGSDDLIPVVAALHDQMHTWQGTPYEWGGTEQSGVDCSGFVWRTLKDRFNLPMERITTRELLHMGVRVNKRDLRPGDLVFFRTRAGMHVGFYDTDHNFLHASSSQGVMRSSLDNPYWESAFYQARRLPKEYNAQITMNSDTLHLAKNRR
>NZ_CP040363.1|WP_004144576.1|647871_648924_-|phosphoporin-PhoE
MKKSTLALMMMGFVASTATQAAEVYNKNANKLDVYGKIKAMHYFSDYDSKDGDQTYVRFGIKGETQINDDLTGYGRWESEFSGNKTESDSSQKTRLAFAGVKLKNYGSFDYGRNLGALYDVEAWTDMFPEFGGDSSAQTDNFMTKRASGLATYRNTDFFGLVDGLDLTLQYQGKNEGREAKKQNGDGVGTSLSYDFGGSDFAVSAAYTSSDRTNDQNLLARGQGSKAEAWATGLKYDANNIYLATMYSETRKMTPISGGFANKAQNFEAVAQYQFDFGLRPSLGYVLSKGKDIEGVGSEDLVNYIDVGLTYYFNKNMNAFVDYKINQLKSDNKLGINDDDIVALGMTYQF
>NZ_CP040363.1|WP_004144574.1|649213_650317_+|glutamate-5-kinase
MSESQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAMGHRIVIVTSGAIAAGREHLGYPELPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQMLLTRADMEDRERFLNARDTLRALLDNSIVPVINENDAVATAEIKVGDNDNLSALAAILAGADKLLLLTDQPGLFTADPRSNPQAELIKDVYGIDDALRAIAGDSVSGLGTGGMGTKLQAADVACRAGIDTIIAAGNRPDVIGHAMAGLPVGTCFHAQESPLENRKRWIFGAPPAGEITVDAGATQAILERGSSLLPKGIKIVSGNFSRGEVIRIRNSEGRDIAHGVSRYNSDALRLIAGQHSQQIDAILGYEYGPVAVHRDDMIIR
>NZ_CP040363.1|WP_004147253.1|650327_651581_+|glutamate-5-semialdehyde-dehydrogenase
MLEQMGIAAKAASWQLALLSSREKNQVLEKIADYLEAQTDDILRANAEDLAEARANGLSEAMLDRLALTPARLSGIASDVRQVCNLADPVGQVIDGGLLDSGLRIERRRVPLGVIGVIYEARPNVTVDVASLCLKTGNAAILRGGKETWRTNAATVKVIQQALQECGLPAAAVQAIESPDRALVGEMLKMDKYIDMLIPRGGAGLHKLCREQSTIPVITGGIGVCHIFVDETAEIAPALKIIVNAKTQRPSTCNTVETLLVHRNIADTFLPALSKQMAESGVTLHAAPSALPALQNGPAKVEPVKAEQYDDEYLSLDLNVKVVADMDEAIAHIREHGTQHSDAILTRTLRNANRFINEVDSSAVYVNASTRFTDGGQFGLGAEVAVSTQKLHARGPMGLEALTTYKWIGFGDDTIRA
>NZ_CP040363.1|WP_064114713.1|653227_653434_-|hypothetical-protein
MKKLILLGLLVLSGQANATQITMTNPQQETTENGKTLCIYENSIYTFTYLTKGKCPYTKTFNTEDSEE
>NZ_CP040363.1|WP_142778369.1|653435_653993_-|tyrosine-type-recombinase/integrase
MAKTSAVTPEQAKQIEAVLRQRSEVAADAWKLNLQLALRISDLLSVKYGDVQGKFLRLKEGKTGKQRELVLNTEALRVLKRRRKQNPEDIFVFQSKSNRVKGQEPKPVSRVFVAQAIKEASQGIVEPGISVATHSARKTRSRALLKAGIPLEIISRMLNHSSPAITMTYLDITQDEVNQTYQMVI
>NZ_CP040363.1|WP_040089179.1|654131_654566_+|hypothetical-protein
MFKFKGGRPTKAQAAARATITQMEKIILNPKAKPADVLEANRLIETLKSVAGVIGESDRPSQTGTTPDIVYSAPDELRASPVPGMYYPPECYTPARLVVSGVCYCDVCQRWRDKHNLKTSQIFDPDCYHEITCEDEGEIGLYIG

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Crispr_ID: NZ_CP040363_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040363_2

706862-706994

Orphan

Consensus_repeat	Method
TGGCGGCTGGCGCCTTACCCGGCCTACAAAACCGAAGCAGCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040363_2

>merge|NZ_CP040363|2|706862-706994|CRISPRCasFinder
TGGCGGCTGGCGCCTTACCCGGCCTACAAAACCGAAGCAGCAGCCCCGGCCAGCGCAGCGCCGCCGGGCACGGAGCCGCTTTATGCCGGCTGGCGGCTGGCGCCTTACCCGGCCTACAAAACTGAAGCAGCAG

>NZ_CP040363|2|1|706862-706994|CRISPRCasFinder
TGGCGGCTGGCGCCTTACCCGGCCTACAAAACCGAAGCAGCAG	CCCCGGCCAGCGCAGCGCCGCCGGGCACGGAGCCGCTTTATGCCGGC
TGGCGGCTGGCGCCTTACCCGGCCTACAAAACTGAAGCAGCAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040363.1\|WP_002889733.1\|702052_702511_-\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236395
NZ_CP040363.1\|WP_002889699.1\|713493_714234_+\|murein-L,D-transpeptidase	unknown	unknown	gnl\|CDD\|225577
NZ_CP040363.1\|WP_032435632.1\|702768_704226_+\|cytosol-nonspecific-dipeptidase	unknown	unknown	gnl\|CDD\|184986
NZ_CP040363.1\|WP_004145825.1\|715046_715628_-\|D-sedoheptulose-7-phosphate-isomerase	unknown	unknown	gnl\|CDD\|179012
NZ_CP040363.1\|WP_002889722.1\|707021_707237_-\|(Na+)-NQR-maturation-NqrM	unknown	unknown	gnl\|CDD\|225538
NZ_CP040363.1\|WP_117074110.1\|704723_705779_-\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
NZ_CP040363.1\|WP_048969221.1\|714204_714972_-\|class-II-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|372525
NZ_CP040363.1\|WP_004177335.1\|708475_709072_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E	unknown	unknown	gnl\|CDD\|235074
NZ_CP040363.1\|WP_002889742.1\|700702_701947_-\|esterase-FrsA	unknown	unknown	gnl\|CDD\|235337
NZ_CP040363.1\|WP_002889702.1\|711738_713082_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-A	unknown	unknown	gnl\|CDD\|235426
NZ_CP040363.1\|WP_004147186.1\|710496_711735_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B	unknown	unknown	gnl\|CDD\|235425
NZ_CP040363.1\|WP_032420366.1\|699666_699879_+\|DUF1471-domain-containing-protein	unknown	unknown	gnl\|CDD\|369322
NZ_CP040363.1\|WP_002889716.1\|709078_709717_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D	unknown	unknown	gnl\|CDD\|236457
NZ_CP040363.1\|WP_002889727.1\|704268_704721_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|182099
NZ_CP040363.1\|WP_048969223.1\|698262_699060_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187602
NZ_CP040363.1\|WP_004177336.1\|709709_710504_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-C	unknown	unknown	gnl\|CDD\|235423
NZ_CP040363.1\|WP_002889793.1\|700246_700645_-\|sigma-factor-binding-protein-Crl	unknown	unknown	gnl\|CDD\|182882
NZ_CP040363.1\|WP_002889720.1\|707239_708463_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F	unknown	unknown	gnl\|CDD\|235481
NZ_CP040363.1\|WP_002889724.1\|705938_706799_+\|glycerophosphoryl-diester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176522
NZ_CP040363.1\|WP_117074111.1\|699092_699509_+\|SRPBCC-family-protein	unknown	unknown	gnl\|CDD\|176863

Protein	Function_ID	Function_description	E-value
NZ_CP040363.1\|WP_002889733.1\|702052_702511_-\|xanthine-phosphoribosyltransferase	gnl\|CDD\|236395	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated.	2.19173e-113
NZ_CP040363.1\|WP_002889699.1\|713493_714234_+\|murein-L,D-transpeptidase	gnl\|CDD\|225577	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown].	1.01465e-109
NZ_CP040363.1\|WP_032435632.1\|702768_704226_+\|cytosol-nonspecific-dipeptidase	gnl\|CDD\|184986	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional.	0
NZ_CP040363.1\|WP_004145825.1\|715046_715628_-\|D-sedoheptulose-7-phosphate-isomerase	gnl\|CDD\|179012	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase.	2.35176e-148
NZ_CP040363.1\|WP_002889722.1\|707021_707237_-\|(Na+)-NQR-maturation-NqrM	gnl\|CDD\|225538	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown].	5.41902e-29
NZ_CP040363.1\|WP_117074110.1\|704723_705779_-\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
NZ_CP040363.1\|WP_048969221.1\|714204_714972_-\|class-II-glutamine-amidotransferase	gnl\|CDD\|372525	pfam13230, GATase_4, Glutamine amidotransferases class-II. This family captures members that are not found in pfam00310.	9.89476e-145
NZ_CP040363.1\|WP_004177335.1\|708475_709072_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E	gnl\|CDD\|235074	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional.	4.25239e-127
NZ_CP040363.1\|WP_002889742.1\|700702_701947_-\|esterase-FrsA	gnl\|CDD\|235337	PRK05077, frsA, esterase FrsA.	0
NZ_CP040363.1\|WP_002889702.1\|711738_713082_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-A	gnl\|CDD\|235426	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional.	0
NZ_CP040363.1\|WP_004147186.1\|710496_711735_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B	gnl\|CDD\|235425	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional.	0
NZ_CP040363.1\|WP_032420366.1\|699666_699879_+\|DUF1471-domain-containing-protein	gnl\|CDD\|369322	pfam07338, DUF1471, Protein of unknown function (DUF1471). This family consists of several hypothetical Enterobacterial proteins of around 90 residues in length. Some members of this family are annotated as ydgH precursors and contain two copies of this region, one at the N-terminus and the other at the C-terminus. The function of this family is unknown.	5.26043e-05
NZ_CP040363.1\|WP_002889716.1\|709078_709717_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D	gnl\|CDD\|236457	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated.	1.0782e-142
NZ_CP040363.1\|WP_002889727.1\|704268_704721_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|182099	PRK09831, PRK09831, GNAT family N-acetyltransferase.	3.92264e-85
NZ_CP040363.1\|WP_048969223.1\|698262_699060_+\|SDR-family-oxidoreductase	gnl\|CDD\|187602	cd05344, BKR_like_SDR_like, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR)-like, SDR. This subgroup resembles the SDR family, but does not have a perfect match to the NAD-binding motif or the catalytic tetrad characteristic of the SDRs. It includes the SDRs, Q9HYA2 from Pseudomonas aeruginosa PAO1 and APE0912 from Aeropyrum pernix K1. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	7.78323e-50
NZ_CP040363.1\|WP_004177336.1\|709709_710504_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-C	gnl\|CDD\|235423	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional.	1.37213e-153
NZ_CP040363.1\|WP_002889793.1\|700246_700645_-\|sigma-factor-binding-protein-Crl	gnl\|CDD\|182882	PRK10984, PRK10984, sigma factor-binding protein Crl.	2.69204e-83
NZ_CP040363.1\|WP_002889720.1\|707239_708463_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F	gnl\|CDD\|235481	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional.	0
NZ_CP040363.1\|WP_002889724.1\|705938_706799_+\|glycerophosphoryl-diester-phosphodiesterase	gnl\|CDD\|176522	cd08580, GDPD_Rv2277c_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.	7.97848e-129
NZ_CP040363.1\|WP_117074111.1\|699092_699509_+\|SRPBCC-family-protein	gnl\|CDD\|176863	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate blocks substrate access to the phosphatase active site. A conserved Trp from PP2C inserts into PYL to lock the receptor in a closed formation. This group also contains Methylobacterium extorquens AM1 MxaD. The mxaD gene is located within the mxaFJGIR(S)ACKLDEHB cluster which encodes proteins involved in methanol oxidation. MxaD may participate in the periplasmic electron transport chain for oxidation of methanol. Mutants lacking MxaD exhibit a reduced growth on methanol, and a lower rate of respiration with methanol.	2.83403e-43

>NZ_CP040363.1|WP_002889724.1|705938_706799_+|glycerophosphoryl-diester-phosphodiesterase
MKKILTALCLLATAGAWAAPQLIAHRGGTGDAPENTLPAIKLALENNAEAIWVTVQLSRDGVPVLYRSSDLSALTNSEGKVSSLTAAELAKVDAGWKWGDDSHPWRGKQATIPTLQSVLQQWPHTFFYIDIKSPDADPTVMGQRLLEVLKTTDSLDRVRVYSTEDRYIAALPPAIPRFVTRSETRTRLANISLSHQCQPASQRDGEQWYGLELKRKVEVVEKFTLGEGISPATLTWDKEAMDCFRSQDKAHIIFFGINSAEDYRTAIELGADGVMVDSPAQAKSWQ
>NZ_CP040363.1|WP_117074110.1|704723_705779_-|DNA-polymerase-IV
MRKIIHVDMDCFFAAVEMRDNPALRDIPLAIGGSRVQRGVISTANYPARKFGVRSAMPTATALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVSDSEHCHGSATLIAQEIRQTIERELRLTASAGVAPVKFLAKIASDMNKPNGQFVIAPHQVAEFVRALPLAKIPGVGKVSAAKLENMGLRTCGDVQNSDLAMLLKRFGKFGRILWERSHGIDEREIHNDRQRKSVGVERTLAEDIHEWPECEAIIENLYPELERRLAKIKPDLLIARQGIKLKFNDFQLTTQEHVWPRLNKEDLIATAHKAWDERRGGRGVRLVGLHVTLLDPQLERQLLLGI
>NZ_CP040363.1|WP_002889727.1|704268_704721_-|GNAT-family-N-acetyltransferase
MHIRAYRDSDLPLLCQIFLRAVRETASRDYTPGQIAAWAQVDETRWRQKLADSIGLVAVVNSQPVGFITAIGTHIDLLFVSPDRARQGIGGALIEALCVQYPAQILTVDASITAKPCFTAHGFKVVAEQRVAARGEWFINYRMEKRVALR
>NZ_CP040363.1|WP_032435632.1|702768_704226_+|cytosol-nonspecific-dipeptidase
MSELSQLSPQPLWDIFAKICSIPHPSYHEEQLAEHIMGWAKEKGLHAERDQVGNILIRKGATAGMENRKPVALQAHLDMVPQKNNDTVHDFVKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVLADDSVAHGPLEVLLTMTEEAGMDGAFGLQANWLQADILINTDSEEEGEIYMGCAGGIDFTSNLALTREAIPAGFQSFKVTLKGLKGGHSGGDIHLGLGNANKLLSRFLAGHADELDLRLVDFNGGTLRNAIPREAYATVAVAADKADALKALVNTYQALLKNELEAKEKNLVVLVEAVDNDKAALSQASRDTFIRLLNATPNGVIRNSDVAKGVVETSLNVGVVTMTDDNVQIHCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEAKGAYPGWQPDANSPVMHLVRETYQRLFNKTPNIQIIHAGLECGLFKKPYPEMDMVSIGPTITGPHSPDEQVHIESVGQYWTLLTELLKAIPAK
>NZ_CP040363.1|WP_002889733.1|702052_702511_-|xanthine-phosphoribosyltransferase
MSEKYVVTWDMLQIHARKLASRLLPVEQWKGIIAVSRGGLVPGALLARELGIRHVDTVCISSYDHDNQRELKVLKRAEGDGEGFIVIDDLVDTGGTAVAIREMYPKAHFVTIFAKPAGRPLVDDYVVDIPQDTWIEQPWDMGVVFVPPIAGR
>NZ_CP040363.1|WP_002889742.1|700702_701947_-|esterase-FrsA
MSQANLSETLFKPRFKHPETSTLVRRFSAGKPQAMQSALSGNHVDHWYRLINRLMWIWRGVTPQEILDVQARIVMSEAERTDPELFDTVIGYRGGNWIFEWAKEAMQWQQKAGQEADPLLSGRHWLHASNLYSIAAYPHIKGDELAEQAQALANRAYEEAAQRLPGSLRELEFTIPGGSPITGFLHMPKGEGPFPTVLMCGGLDSLQTDYYNLYENYFSPLGIAMLTIDMPSIGFSSKWTLNQDTSLLHQHALRHLENVPWIDHTRVAAFGFRFGANIAVRLGYLEPQRLKAVACLGPVVHGLLVDPLHQGRVPEMYLDVLASRLGMHDASDEALRVELNRYSLKTQGLLGRRCPTPMLSGFWKDDPFSPEEESRLITSSSADGKLLEIPFNPVYRNFDHALRQIARWINHRFG
>NZ_CP040363.1|WP_002889793.1|700246_700645_-|sigma-factor-binding-protein-Crl
MTLPSGHLKSKLIKKFTALGPYIREEQCHDNRFFFDCLAVCVNVKPAPEKREFWGWWMEMEAQESRFTYSYQFGLFNKEGSWQAVDIDDPEVSDRLEKTLREFHERAAALLTTFNLKLEPADDFSEPVRLRA
>NZ_CP040363.1|WP_032420366.1|699666_699879_+|DUF1471-domain-containing-protein
MKTVSTIFSAAALSLFAFTASAHSVTATSNTLDSAEAMIAKKAKELNATDYKITSAHMGNKVTMSAVLDK
>NZ_CP040363.1|WP_117074111.1|699092_699509_+|SRPBCC-family-protein
MATTTISIEIPASVDQVWQLMGGFDSLPDWLPFIPKSMVSEGGRVRTLTTSDGGTVIERLEAFDNRQRSYSYSIIQAQFPVVDYLSTIAVVATADSNITRVEWSGSFTPVNVSDADAEALFSGIYRDGLQALKNNFSA
>NZ_CP040363.1|WP_048969223.1|698262_699060_+|SDR-family-oxidoreductase
MKLDLTHKVAVVSGSTSGIGLDIAKGLAWAGATVVIVGRQQRGVDTAIAAINAEHPDAQLRGVVADLSTEEGVSALLAAEPHADVVVNNLGIFNDKDFFSVPDSEWMHFYNVNVLSGVRLSRHYAQGMIDNGWGRIIFVSSESGVAIPADMINYGVTKSANLAVSHGLAKRLAGTGVTVNAILPGPTFTEGLQEMLAEAATQSGRSPREQADEFVKTARPSSIIQRAADVDEVANLAVYLASPLSSATTGAALRVDGGVVDTLAM
>NZ_CP040363.1|WP_002889722.1|707021_707237_-|(Na+)-NQR-maturation-NqrM
MLTVFIATFVIFALVILGMSLGYLVKRKSIQGSCGGISALGLEKVCDCPEPCDARKKRLAREAQRQQRRIL
>NZ_CP040363.1|WP_002889720.1|707239_708463_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F
MEIILGVVMFTLIVLVLSGLILAARSKLVNAGDVVIEINNEADKQIRTPAGDKLLNTLSSNGIFVSSACGGGGSCGQCRVTVKEGGGDILPTELSHITKRDAKAGCRLACQVAVKQNMKIELPEEIFGVKKWECEVISNDNKATFIKELKLRIPEGEVVPFRAGGYIQIECPPHKVAYADFDVPDEYRSDWDKFNLFRYVSEVKEPTLRAYSMANYPEEKGIIMLNVRIATPPPKVPDAPPGIMSSYIWSLKPGDKVTISGPFGEFFAKETDAEMVFIGGGAGMAPMRSHIFDQLKRLHSTRKISFWYGARSLREMFYDEEFEQLARDNPNFTFHVALSDPLPEDNWTGHTGFIHNVLYENYLRDHPAPEDCEFYMCGPPVMNAAVIKMLKDLGVEDENILLDDFGG
>NZ_CP040363.1|WP_004177335.1|708475_709072_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E
MAHYISLFVRAVFVENMALAFFLGMCTFLAVSKKVSTAFGLGVAVTVVLGLAVPINNLVYNLVLRDGALVEGVDLSFLNFITFIGVIAALVQILEMILDKYFPALYNALGIFLPLIAVNCAIFGGVSFMVQRDYNFPESIVYGFGSGIGWMLAIVAMAGIREKMKYANVPAGLRGLGITFITTGLMALGFMSFSGVQL
>NZ_CP040363.1|WP_002889716.1|709078_709717_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D
MAEQSDMKEVKRVLVGPLIANNPIALQVLGVCSALAVTTKLETAFVMTIAVTLVTAFSSMFISMIRHHIPNSVRIIVQMAIIASLVIVVDQLLRAFAYETSKQLSVFVGLIITNCIVMGRAEAYAMKSPPLASFMDGIGNGLGYGAILIIVGFLRELIGSGKLFGITVLETVQNGGWYQPNGLFLLAPSAFFIIGLLIWALRSWKPEQQEKE
>NZ_CP040363.1|WP_004177336.1|709709_710504_-|Na(+)-translocating-NADH-quinone-reductase-subunit-C
MAEKKSNDSIGKTLLVVLVLCLVCSIVVAGSAVGLKSRQQAQRALDKQRNILAVSGLMHPGMDADAVADTFAARITPRLVNLATGELLEKDPGKFNQAQALKDPQQSMALDASQDPAGIKRRSNLAEIYLVRDAQQKIEQVVLPIYGNGLWSMMYAFVALDVDGRTVKGITYYDQGETPGLGGEVENPNWRQQFVGKQVLDDNGMPALKVVKGGARAGDLHAVDGLSGATLTSNGVQHSFDFWMGELGFGPFLKKVREGELNNG
>NZ_CP040363.1|WP_004147186.1|710496_711735_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B
MGLKHLIEKLEPHFTHGGKLEKYYPLYEAAATIFYTPGQVTRGAAHVRDAIDLKRMMILVWFAVFPAMFWGMYNVGLQTIPALHKLYGAEQLQQAIANNWHYSVAQWLGVSFSADAGWLSMMTLGAVFFLPIYITVFIVGGFWEVLFAIVRKHEINEGFFVTSILFALIVPPTLPLWQAALGISFGVVIAKEIFGGTGRNFLNPALAGRAFLFFAYPAQISGDLVWTAADGFSGATPLSQWASGGGEALVNVATGVPVSWMDAFLGNIPGSIGEVSTLMIFIGGAIILFGRVASWRIVAGVMIGMIATATLFNVIGSDTNPMFAMPWYWHLVLGGFAFGMMFMATDPVSASFTDKGKWSYGVLIGVMCVLIRVVNPAYPEGMMLAILFANLFAPLFDYLVVQANIKRRKSRG
>NZ_CP040363.1|WP_002889702.1|711738_713082_-|Na(+)-translocating-NADH-quinone-reductase-subunit-A
MIKITKGLDLPIAGMPLQQISPAPAVKRVALLGEEYVGMRPAMAVKEGDRVKKGQILFEDKKIPGVCFTAPASGIVSAIHRGERRVLQSVVIDIEGNDAVAFTRYAADALAELPRDTVQQQLLASGQWTALRTRPFSKTPLPGSTPAAIFVNAMDTNPLAAEPQPIILAERAAFDAGLTVLTRLTDGKVHVCQPSGGKLGGHPLGQVCFNQFSGPHPAGLPGTHIHFLEPVSLNKQVWHLNYQDAIAIGKLFLDGELYCERIIALGGPQVTSPRLVKTTLGASLEDLLAGELQEGENRVISGSVLSGARAHGPHAFLGRFHLQVSVVKEGREKELFGWVMPGKEKFSITRTTLGHFFKRKRFHFSTDTNGGERAMVPIGNYERVMPLDILPTILLRDLLAGDTDSAQALGCLELDEEDLALCTYVCPGKYEYGPALRSVLTRIEQEG
>NZ_CP040363.1|WP_002889699.1|713493_714234_+|murein-L,D-transpeptidase
MRKIALFIAMLLLPCVSFAGLLSSNSPTTPVSKEYKQQLMGSPVYIEIFKEERMLDLYVKMGETYQLLDSYRICNYSGGLGPKQRQGDFKSPEGFYNVTRSQLKPDSRFYKAINIGFPNAYDRAHGYEGKYLMIHGDCVSVGCYAMTDSGIDEIFQFVTGALVFGQPSVQVSIYPFRMTNANMERHKYSYYADFWKQLKPGYDYFQQTHKPPVVSVTDGRYVVSKPLSHEVVQPQLASNYTLPETK
>NZ_CP040363.1|WP_048969221.1|714204_714972_-|class-II-glutamine-amidotransferase
MCELLGMSANVPTDICFSFTGLVQRGGGTGPHKDGWGITFYEGKGCRTFKDPQPSFQSPIAKLVQDYPIKSCSVVAHIRQANRGRVALENTHPFTRELWGRNWTYAHNGQLKGYKSLKTGNFHPVGETDSEKAFCWLLHRLTERYPRTPGNMLGVFKYIATLAGELREKGVFNMLLSDGRYVMAFCSTNLYWITRRAPFGVAKLLDQDVEIDFQRETTPNDVVTVIATQPLTANETWHKIMPGEWALFCLGERVV
>NZ_CP040363.1|WP_004145825.1|715046_715628_-|D-sedoheptulose-7-phosphate-isomerase
MYQDLIRNELNEAAETLANFLQDEANIHAIQRAAVLLADSFKAGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVSHLSCVSNDFGYEYVFSRYVESVGRAGDVLLGISTSGNSGNVIKAIEAARAQGMKVITLTGKDGGKMAGSADVEIRVPHFGYADRIQEIHIKVIHILIMLIEKEMAKG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP040363_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040363_3

2944476-2944584

Orphan

Consensus_repeat	Method
TGTCCCACCCTGTACCACTTTTTTTAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040363_3

>merge|NZ_CP040363|3|2944476-2944584|CRISPRCasFinder
TGTCCCACCCTGTACCACTTTTTTTAAACCAAATTCTGTAATGTGGGACGCTGAAACCCGCGCCAGCTCTGCGTGTACCACTTGTCCCACCCTGTACCACCTTTTTTTA

>NZ_CP040363|3|2|2944476-2944584|CRISPRCasFinder
TGTCCCACCCTGTACCACTTTTTTTAA	ACCAAATTCTGTAATGTGGGACGCTGAAACCCGCGCCAGCTCTGCGTGTACCACT
TGTCCCACCCTGTACCACCTTTTTTTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040363.1\|WP_071844617.1\|2939895_2940102_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040363.1\|WP_032418460.1\|2951394_2952042_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040363.1\|WP_071549035.1\|2954556_2955033_+\|type-II-toxin-antitoxin-system-RatA-family-toxin	unknown	unknown	gnl\|CDD\|182678
NZ_CP040363.1\|WP_032418453.1\|2943548_2943833_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|372675
NZ_CP040363.1\|WP_004174799.1\|2955868_2957530_-\|DNA-repair-protein-RecN	unknown	unknown	gnl\|CDD\|236781
NZ_CP040363.1\|WP_004145682.1\|2955022_2955313_+\|RnfH-family-protein	unknown	unknown	gnl\|CDD\|234982
NZ_CP040363.1\|WP_002914164.1\|2953963_2954446_-\|SsrA-binding-protein-SmpB	unknown	unknown	gnl\|CDD\|235455
NZ_CP040363.1\|WP_002914158.1\|2957616_2958495_-\|NAD(+)-kinase	unknown	unknown	gnl\|CDD\|235122
NZ_CP040363.1\|WP_032418459.1\|2947402_2951206_-\|DNA-binding-protein	unknown	unknown	unknown
NZ_CP040363.1\|WP_002914160.1\|2955379_2955721_-\|outer-membrane-protein-assembly-factor-BamE	unknown	unknown	gnl\|CDD\|183190
NZ_CP040363.1\|WP_032440247.1\|2940542_2941556_-\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_CP040363.1\|WP_032418451.1\|2942914_2943436_-\|PTS-sorbitol-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|226253
NZ_CP040363.1\|WP_087757875.1\|2943927_2944284_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP040363.1\|WP_032418456.1\|2944602_2946672_-\|DUF927-domain-containing-protein	unknown	unknown	gnl\|CDD\|227806
NZ_CP040363.1\|WP_123836165.1\|2937862_2938408_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040363.1\|WP_032418444.1\|2938429_2938879_-\|phage-virion-morphogenesis-protein	unknown	unknown	gnl\|CDD\|368274
NZ_CP040363.1\|WP_032418448.1\|2941566_2942547_-\|PTS-glucitol/sorbitol-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|226255
NZ_CP040363.1\|WP_032418449.1\|2942543_2942918_-\|PTS-glucitol/sorbitol-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|226254
NZ_CP040363.1\|WP_032418458.1\|2946707_2946923_-\|AlpA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225848
NZ_CP040363.1\|WP_077256168.1\|2939252_2939498_-\|holin	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP040363.1\|WP_071549035.1\|2954556_2955033_+\|type-II-toxin-antitoxin-system-RatA-family-toxin	gnl\|CDD\|182678	PRK10724, PRK10724, type II toxin-antitoxin system RatA family toxin.	3.17506e-105
NZ_CP040363.1\|WP_032418453.1\|2943548_2943833_-\|transcriptional-regulator	gnl\|CDD\|372675	pfam13693, HTH_35, Winged helix-turn-helix DNA-binding.	1.06433e-37
NZ_CP040363.1\|WP_004174799.1\|2955868_2957530_-\|DNA-repair-protein-RecN	gnl\|CDD\|236781	PRK10869, PRK10869, recombination and repair protein; Provisional.	0
NZ_CP040363.1\|WP_004145682.1\|2955022_2955313_+\|RnfH-family-protein	gnl\|CDD\|234982	PRK01777, PRK01777, RnfH family protein.	7.65271e-47
NZ_CP040363.1\|WP_002914164.1\|2953963_2954446_-\|SsrA-binding-protein-SmpB	gnl\|CDD\|235455	PRK05422, smpB, SsrA-binding protein SmpB.	5.43734e-87
NZ_CP040363.1\|WP_002914158.1\|2957616_2958495_-\|NAD(+)-kinase	gnl\|CDD\|235122	PRK03378, ppnK, inorganic polyphosphate/ATP-NAD kinase; Provisional.	0
NZ_CP040363.1\|WP_002914160.1\|2955379_2955721_-\|outer-membrane-protein-assembly-factor-BamE	gnl\|CDD\|183190	PRK11548, PRK11548, outer membrane protein assembly factor BamE.	5.2573e-82
NZ_CP040363.1\|WP_032440247.1\|2940542_2941556_-\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	3.76512e-65
NZ_CP040363.1\|WP_032418451.1\|2942914_2943436_-\|PTS-sorbitol-transporter-subunit-IIC	gnl\|CDD\|226253	COG3730, SrlA, Phosphotransferase system sorbitol-specific component IIC [Carbohydrate transport and metabolism].	6.94718e-79
NZ_CP040363.1\|WP_087757875.1\|2943927_2944284_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.98259e-09
NZ_CP040363.1\|WP_032418456.1\|2944602_2946672_-\|DUF927-domain-containing-protein	gnl\|CDD\|227806	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair].	0
NZ_CP040363.1\|WP_032418444.1\|2938429_2938879_-\|phage-virion-morphogenesis-protein	gnl\|CDD\|368274	pfam05069, Phage_tail_S, Phage virion morphogenesis family. Protein S of phage P2 is thought to be involved in tail completion and stable head joining.	6.12186e-39
NZ_CP040363.1\|WP_032418448.1\|2941566_2942547_-\|PTS-glucitol/sorbitol-transporter-subunit-IIB	gnl\|CDD\|226255	COG3732, SrlE, Phosphotransferase system sorbitol-specific component IIBC [Carbohydrate transport and metabolism].	1.71362e-173
NZ_CP040363.1\|WP_032418449.1\|2942543_2942918_-\|PTS-glucitol/sorbitol-transporter-subunit-IIA	gnl\|CDD\|226254	COG3731, SrlB, Phosphotransferase system sorbitol-specific component IIA [Carbohydrate transport and metabolism].	3.73192e-58
NZ_CP040363.1\|WP_032418458.1\|2946707_2946923_-\|AlpA-family-transcriptional-regulator	gnl\|CDD\|225848	COG3311, AlpA, Predicted transcriptional regulator [Transcription].	5.83127e-21

>NZ_CP040363.1|WP_087757875.1|2943927_2944284_+|helix-turn-helix-transcriptional-regulator
MPEDGCCPERDNSCIFRCRVAIVIGKRLKISRVRADLTQAELGVLAGLDEESASARISSYEKEVHAPDFKLVCKLAAALDVPEAYFYAVDDELAELILQYHRFKKNNPGRTLLFSPNP
>NZ_CP040363.1|WP_032418453.1|2943548_2943833_-|transcriptional-regulator
MKKSTTKDWHPADIIAALHKRGTSLAKLSREAGLASSTLSNTLTRAWPKGEWLIAIALDVHPSEIWPGRYLNSSNKREPRKPLHPMTTTDNSGT
>NZ_CP040363.1|WP_032418451.1|2942914_2943436_-|PTS-sorbitol-transporter-subunit-IIC
MFLVSLAEGFIHLFQAAGKIFLDMMTGLIPMLICLLLAINFLMKLVGTIRMEKVAALLGRSRILTYGVLPVLGWFFMSSPGALTLGKLLPEKSKPGYEDALGTTAHPLTSLFPHVVPSELFVWLGVAAGVKALGLPVTSLALRYIAAAMLIGLIRGIITEYLFLRLSKRGNVP
>NZ_CP040363.1|WP_032418449.1|2942543_2942918_-|PTS-glucitol/sorbitol-transporter-subunit-IIA
MMIYCARITAIGLFVADGLTDKMLITFDSNGPKDCLDYSLSLEPSFREESLMILPGDRLMLAGHDYLVTAVGKGAQQALFELGHLTLVFNGDLNPCHTGTVHLSGPVPNLRDLHGNLVIEEGRP
>NZ_CP040363.1|WP_032418448.1|2941566_2942547_-|PTS-glucitol/sorbitol-transporter-subunit-IIB
MNTVLIPPGPGGYGKGLWLPVASGKKVLSLTGREIHPVAIEIGALTESEIVNGFSDIPPDNDILCVVINCAGSLRCGLYPQKGIPTINVLPTWRAGPLAHFITEENYVSDVTMEQLVLVDTAEAPDSEPEITPEPALRVITTPPPPRGAEKLVRMVEQTGTAVGHVIALLFAASREAVDVSLRNVIPFMAFVSLLIALVQETALGSLIAHAMTPLANSLWGLVLLSLICGIPFLSPVLGPGAAISQVIGVMIGTQIGAGAISPAFALPALFAINVQVGCDFVPVGLSMQEAKPETIAKGVPAFLLSRQLTGPLAVIIGWLFSLGLF
>NZ_CP040363.1|WP_032440247.1|2940542_2941556_-|Gfo/Idh/MocA-family-oxidoreductase
MNKIRAAVVGAGIYGKHHMNAYRHNPDTVLVAICDTDTERCDDLAMAYGVIGYTRLDVLLQEEAIDVVSVATPDPYHTESILTALRHGKHVLAEKPLATSVRECELIVEMAQQRDLLVGVDFHKRWDLAVMRIKAELEKPEAGRILRGHISMDDVISVPTEWLNWAGASSPVWFLGSHCFDLVRHLSGQEVVSVYAVGQKRLMVECGLDTFDSVQSLLTMADGSSWVVENSWVLPEGFPKDNDGRIDILCEATYIRSTSQHRGLEITTPGMTLTPNSYFINYRNGIASGFGIDPINDFVRAVRNRSPYPVTAVDGLAVSRICEAVHRSLKSGKPEKI
>NZ_CP040363.1|WP_071844617.1|2939895_2940102_-|hypothetical-protein
MESEHEAINIALTIENGVVTNVRQIRKDEHIASLETFLWIVKRAGYEVVPPQESTQDPENIKVLAEVE
>NZ_CP040363.1|WP_077256168.1|2939252_2939498_-|holin
MLCAGCTSAPPVPTPVIVYNACPRVSLCPMPGSDPTTNGDLSADIRQLVSALEGCALQVRTVKNCQDKIDVQAKESAKSLN
>NZ_CP040363.1|WP_032418444.1|2938429_2938879_-|phage-virion-morphogenesis-protein
MNDFKPFDDKLAGLIAALSPTARRKMAADIAKPLRARQQRRIKTQKAPDGTPYAARKRQPVKAKKDRVKREMFAKLRISRFMKATAGNDVAVVEFTGKVQRMVNVHQYGLKDKPSPNSGSVEYPARILLGFSPSDIDFASTKIVNYLSE
>NZ_CP040363.1|WP_123836165.1|2937862_2938408_-|hypothetical-protein
MRKLSKGNEGAIDKKIELMIKVIIRTDSYLNSANTKSTILLSLSSALLVALSVNFKNITGMVIVDSDKAVLAVLISLMIFLLITSIVFSLRGITPYIKPSTVSNTFSFVDISINFHELHLYKERFNSVSKLEYLNELISLNHNLSKALVAKYNKQITAITCIEATAYVLCFSVYMIIIANC
>NZ_CP040363.1|WP_032418456.1|2944602_2946672_-|DUF927-domain-containing-protein
MKRAPFLCKQSPDRTLEVVILAGSLAWETSRIWRKDPEREDDVPPVVLGPDELADLDNLTIIRPDTLYVRVLRTGDIREEELLKIAVKLAHAGVQMARLMSPDGELLEDWSGQLARLRQERPSDILPDHFRLDEEALWFDKLTERRDGESDVQPQRICSPLRVTAITCDSHDDSYGRLLEWHTTTGQLRRWAMPMAMLSGNGEELRRILLENGLTYISTRPALRSLLCEYISRSLPGRRVTCVEKTGWHNGVYVLPDEVIGPGGDNIILQGSHYLTGGFAQAGTLAEWQGQVAALCAGNSRLVFAVCCALAAPLLRLTGTGGGGFHLRGESTDGKTTVMKVAASVCGGTDYWHSWRATGNALEGIASRHNDALLPLDELREVDPREAGMIAYMLANGQGKGRARTDGEVRNRRHWTLLLFSTGELSLAEHTERAGERLYAGMDVRMVQIPSDTGNHGAFEQLHGFASGQQFADTLCDRVARFHGTAFRAWLAFLTHDQDASTTLARELLRRYQTALMPENAGNQVQRIVARFALLAVAGEMATLQGITGWQEGTAYGAVQICLHAWLNERGHIANQEDEGVLAQIKRFITAHQYSRFASWDGPDRPLNMVGFRRVEKDPLTGEEYTLFHILPEGWREMCRGFSPARAARLCLEAECLLPGSDGKYQSQVRLPEIGKARVYRLTSRILSI
>NZ_CP040363.1|WP_032418458.1|2946707_2946923_-|AlpA-family-transcriptional-regulator
MKTRADNNDAFPESGNVRMRQVVQFLAMSESSVYRLIKDTDFPRPVHLSSRLVVFDAAEIRQWQQRRAAIR
>NZ_CP040363.1|WP_032418459.1|2947402_2951206_-|DNA-binding-protein
MALLDKIKSLISANETATQNIEEESVYDTLTPKIITDSSVKHYFDALDFAFSKQDVKNIAITGPYGAGKSTVIQSYLKTHLNREFINVSLADFSLSGKSDEAPLENSEIELSILQQILYKENKDNLPDSRIDRIQNRNKKHISSLFLTVLSVVAPLLLLAITIFPKYFFSLFGATEPTINVIVNMFPERFFVSIIMGLLCLFFIVRVASKAGIFDKKIKLSKIAFLQGSADMASQESSSLLNNCLDEIVYFFSRSQYKIVVFEDLDRLGNAEVFVKLREINQIVNNNLQSEPVRFIYACRDDIFLGADIRTKFFDFILPVIPVMDARNAYTHLKNKLYDFPENEQPLLKQMSLYISDMRSLQNIVNEFNLFKKVVDDNTNQAKIFALIFYKNIYAQDYNLTDKKSGVLYSFIHNYRLRKLHENHFKLLDQRLEELNNKLVKIRKESVSTDAELRKQIISRFISPELWPIVYFIKDTGNYHQRYIKFSAESFYNSEHEFINYFEQNSSLYIGYPFNGNQHQLAKIDSTSIIEEYKQRNILISSNRDDAYKKTTKEIEELKENIRTRNAISLANLLKIIGWENFRTIAEEYIATCDDRTIIDPEQLETIRNGFRFGGFEALYYLLTNGYIMQDFMMFRSIFNQGTISANDNDYIKAVGRYIGCEEANQTFLLDNSKDVLAELVGQHYQYREGALHHQIIAFLLDSQDNQDHKTLSAMIAMIFRQPASVIIAIFKILEDRFINVDYFTRLVVSSLSENKYLDKMISVLKEQEHNAISKSIASKMIALVSPDISTDQKNYQKFIEDLGFSLVSEVEPNNLQYFLHNIEQLQVIYHDIYLPVTPNEMKALNFIGDHQMYPLDRATYRVVVAGLLQSDNVTCEMVDDLPWSLLDKHQLSKIKVYVNDNINIFVKDIFIDSKESSNAIVSVITHSDLSDELKILILEKMQFTVTGLNEFPEYIDVDGNELSYHDLFYRYDHVTPGWEALLAYICEECNLEILTQYIENYADVLSQEAINLMEGDRYDLLYMKVICNDNLSDSAYAAILEPVYINTHHWDERMSLKNLYRLIKNRKIELDPETFKQAIQYFISNNDLKRIEPFVLWFSQFKDNFFPNIEYYLCVNQDDVFFKESLIGINNSHVFTLQEKSSILFKCREHYELSLFEELTISNEGLIALVNTSTDDNFTIYVIIKLLKNGYRSRTEIAHFVSRLEEKEYTKIFYQKSATLNLDKPQEAELFLSALQQANLIKKWTLRDVGKYYVQCRYEEDESYLD
>NZ_CP040363.1|WP_032418460.1|2951394_2952042_-|hypothetical-protein
MTSPIRQNLFERECDMPLLEARHLALLLLGLDASQPANALPEEHQENYRILHDAISRTIKATGMVSAPANKRMFYADEMFALAWRLIDDELTPPEIKARSLKAVMKLSRNSRGRKWLKTLGDDALPDLTTSAQPSQRGMHKRDKARENTARLCWLLVQLLVEETDGRYGTSDKPASDRILRKLRALAQERELPSDGLGRGTFYEVLKMGRERKYR
>NZ_CP040363.1|WP_002914164.1|2953963_2954446_-|SsrA-binding-protein-SmpB
MTKKKAHKPGSATIALNKRARHEYFIEDEYEAGLALQGWEVKSLRAGKANIGDSYVILKDGEAFLFGANFTPMAVASTHYVCDPTRTRKLLLNQRELDTLYGRINREGYTVVALSLYWKNAWCKVKIGVAKGKKQHDKRTDLKDREWALDKARIMKHAGR
>NZ_CP040363.1|WP_071549035.1|2954556_2955033_+|type-II-toxin-antitoxin-system-RatA-family-toxin
MILFALCLNVEPAMPQISRTALVPFSAEQMYQLVNDVKSYPDFLPGCTGSRVLEFGPTQMTAAVDVSKAGISKTFTTRNTLTSNQSILMSLVDGPFKKLIGGWKFIPLSPEACKIEFHLDFEFTNKLIEMAFGRVFKELAANMVQAFTSRAKEVYSAS
>NZ_CP040363.1|WP_004145682.1|2955022_2955313_+|RnfH-family-protein
MPANIRVEVAYALPEKQYLQRVTLDEGATVEQAIIASGLLALRDDIDLAKNKLGIYSRPVKLHDEVHDGDRVEIYRPLIADPKELRRQRAEKSAAK
>NZ_CP040363.1|WP_002914160.1|2955379_2955721_-|outer-membrane-protein-assembly-factor-BamE
MRCKTLTAAAAVLLMLTAGCSTLERVVYRPDINQGNYLAPNDVAKIRVGMTQQQVAYALGTPMMTDPFGTNTWFYVFRQEPGHQKVTQQTLTLTFNSGGVLTNIDNKPALTSQ
>NZ_CP040363.1|WP_004174799.1|2955868_2957530_-|DNA-repair-protein-RecN
MLAQLTISNFAIVRELEIDFHSGMTAITGETGAGKSIAIDALGLCLGGRAEADMVRRGATRADLCARFALKDTPAAQRWLEENQLESGRECLLRRVISADGRSRGFINGTAVPLSQLRELGQLLIQIHGQHAHQLLTKPEHQKTLLDGYTGEYALTQRMAEHYRQWHQSCRELAQHQQQSQERAARADLLQYQLKELNEFNPLPGEFEQIDEEYKRLANSGQLLSTCQHALTVLADGEEANLQSQLYTAKQLVSELVGMDSKLSGVLDMLEEAAIQLSEASDELRHYHDRLDLDPNRLFELEQRISRQIALARKHQVMPEELPAVYQAMLEEQRLLDDSAGSLESLSQQVVEHHQLALETARQLHALRQASADELTQLITESMHSLSMPHGVFAIEVAFDERHLTADGADHIEFRVTTNPGQPLQPIAKVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHHHFFVCKETDGEMTETHMQPLDKRARLQELARLLGGSEVTRNTLANAKELLAA
>NZ_CP040363.1|WP_002914158.1|2957616_2958495_-|NAD(+)-kinase
MKNHFKCIGIVGHPRHPTALTTHEMLWRWLCSKGYEVLVEQQIAHELQLSNVKTGTLAEIGQQADLAVVVGGDGNMLGAARTLARYDINVIGINRGNLGFLTDLDPDNALQQLADVLEGHYIAEKRFLLEAQVCQQDCQKRISTAINEVVLHPGKVAHMIEFEVYIDEVFAFSQRSDGLIISTPTGSTAYSLSAGGPILTPSLDAITLVPMFPHTLSARPLVINGDSTIRLRFSHRCSDLEISCDSQIALPIQDGEDVLIRRCDYHLNLIHPKDYSYFNTLSTKLGWSKKLF

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP040363_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040363_4

3813616-3813717

Orphan

Consensus_repeat	Method
TGTAGCCTCGCTAAGCGAAGCGCGAGCGATGAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040363_4

>merge|NZ_CP040363|4|3813616-3813717|CRISPRCasFinder
TGTAGCCTCGCTAAGCGAAGCGCGAGCGATGAGACAGCAGAACAGGTGGCTGAGAGAGTGCAGGAATGTGTAGCCTCGCTAAGCGAAGCGCGAGCGAGGAGA

>NZ_CP040363|4|3|3813616-3813717|CRISPRCasFinder
TGTAGCCTCGCTAAGCGAAGCGCGAGCGATGAGA	CAGCAGAACAGGTGGCTGAGAGAGTGCAGGAATG
TGTAGCCTCGCTAAGCGAAGCGCGAGCGAGGAGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040363.1\|WP_002910095.1\|3824210_3824858_+\|YchE-family-NAAT-transporter	unknown	unknown	gnl\|CDD\|236850
NZ_CP040363.1\|WP_002910107.1\|3817089_3818103_+\|two-component-system-response-regulator-RssB	unknown	unknown	gnl\|CDD\|182652
NZ_CP040363.1\|WP_002910100.1\|3820293_3820911_+\|thymidine-kinase	unknown	unknown	gnl\|CDD\|235272
NZ_CP040363.1\|WP_004180383.1\|3799534_3800917_+\|YchO/YchP-family-invasin	unknown	unknown	gnl\|CDD\|236661
NZ_CP040363.1\|WP_002910108.1\|3816097_3817000_+\|patatin-like-phospholipase-RssA	unknown	unknown	gnl\|CDD\|182352
NZ_CP040363.1\|WP_004152249.1\|3813118_3813562_+\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NZ_CP040363.1\|WP_004189450.1\|3812114_3813011_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|273359
NZ_CP040363.1\|WP_004151854.1\|3814641_3815484_-\|formyltetrahydrofolate-deformylase	unknown	unknown	gnl\|CDD\|235676
NZ_CP040363.1\|WP_046653762.1\|3801574_3803353_-\|nitrate/nitrite-two-component-system-sensor-histidine-kinase-NarX	unknown	unknown	gnl\|CDD\|182581
NZ_CP040363.1\|WP_002910105.1\|3818300_3819203_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	unknown	unknown	gnl\|CDD\|184021
NZ_CP040363.1\|WP_004175568.1\|3803664_3805053_+\|NarK-family-nitrate/nitrite-MFS-transporter	unknown	unknown	gnl\|CDD\|184994
NZ_CP040363.1\|WP_002910198.1\|3800913_3801564_-\|two-component-system-response-regulator-NarL	unknown	unknown	gnl\|CDD\|182619
NZ_CP040363.1\|WP_002910191.1\|3810730_3811441_+\|nitrate-reductase-molybdenum-cofactor-assembly-chaperone	unknown	unknown	gnl\|CDD\|185014
NZ_CP040363.1\|WP_032418823.1\|3805458_3809202_+\|nitrate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|227346
NZ_CP040363.1\|WP_002910193.1\|3809198_3810734_+\|nitrate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|224063
NZ_CP040363.1\|WP_002910103.1\|3819324_3819732_-\|DNA-binding-transcriptional-regulator-H-NS	unknown	unknown	gnl\|CDD\|182858
NZ_CP040363.1\|WP_002910097.1\|3821058_3823734_-\|bifunctional-acetaldehyde-CoA/alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|237515
NZ_CP040363.1\|WP_002910189.1\|3811440_3812118_+\|respiratory-nitrate-reductase-subunit-gamma	unknown	unknown	gnl\|CDD\|273030
NZ_CP040363.1\|WP_032103886.1\|3823811_3823997_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040363.1\|WP_002910109.1\|3815526_3815985_-\|YchJ-family-protein	unknown	unknown	gnl\|CDD\|234966

Protein	Function_ID	Function_description	E-value
NZ_CP040363.1\|WP_002910095.1\|3824210_3824858_+\|YchE-family-NAAT-transporter	gnl\|CDD\|236850	PRK11111, PRK11111, YchE family NAAT transporter.	5.03226e-138
NZ_CP040363.1\|WP_002910107.1\|3817089_3818103_+\|two-component-system-response-regulator-RssB	gnl\|CDD\|182652	PRK10693, PRK10693, two-component system response regulator RssB.	0
NZ_CP040363.1\|WP_002910100.1\|3820293_3820911_+\|thymidine-kinase	gnl\|CDD\|235272	PRK04296, PRK04296, thymidine kinase; Provisional.	1.66434e-117
NZ_CP040363.1\|WP_004180383.1\|3799534_3800917_+\|YchO/YchP-family-invasin	gnl\|CDD\|236661	PRK10177, PRK10177, YchO/YchP family invasin.	0
NZ_CP040363.1\|WP_002910108.1\|3816097_3817000_+\|patatin-like-phospholipase-RssA	gnl\|CDD\|182352	PRK10279, PRK10279, patatin-like phospholipase RssA.	0
NZ_CP040363.1\|WP_004152249.1\|3813118_3813562_+\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	1.05574e-32
NZ_CP040363.1\|WP_004189450.1\|3812114_3813011_-\|DMT-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	3.2204e-15
NZ_CP040363.1\|WP_004151854.1\|3814641_3815484_-\|formyltetrahydrofolate-deformylase	gnl\|CDD\|235676	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed.	4.09997e-176
NZ_CP040363.1\|WP_046653762.1\|3801574_3803353_-\|nitrate/nitrite-two-component-system-sensor-histidine-kinase-NarX	gnl\|CDD\|182581	PRK10600, PRK10600, nitrate/nitrite two-component system sensor histidine kinase NarX.	0
NZ_CP040363.1\|WP_002910105.1\|3818300_3819203_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	gnl\|CDD\|184021	PRK13389, PRK13389, UTP--glucose-1-phosphate uridylyltransferase GalU.	0
NZ_CP040363.1\|WP_004175568.1\|3803664_3805053_+\|NarK-family-nitrate/nitrite-MFS-transporter	gnl\|CDD\|184994	PRK15034, PRK15034, nitrate/nitrite transport protein NarU; Provisional.	0
NZ_CP040363.1\|WP_002910198.1\|3800913_3801564_-\|two-component-system-response-regulator-NarL	gnl\|CDD\|182619	PRK10651, PRK10651, transcriptional regulator NarL; Provisional.	1.26442e-140
NZ_CP040363.1\|WP_002910191.1\|3810730_3811441_+\|nitrate-reductase-molybdenum-cofactor-assembly-chaperone	gnl\|CDD\|185014	PRK15054, PRK15054, nitrate reductase molybdenum cofactor assembly chaperone.	1.14838e-83
NZ_CP040363.1\|WP_032418823.1\|3805458_3809202_+\|nitrate-reductase-subunit-alpha	gnl\|CDD\|227346	COG5013, NarG, Nitrate reductase alpha subunit [Energy production and conversion].	0
NZ_CP040363.1\|WP_002910193.1\|3809198_3810734_+\|nitrate-reductase-subunit-beta	gnl\|CDD\|224063	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion].	0
NZ_CP040363.1\|WP_002910103.1\|3819324_3819732_-\|DNA-binding-transcriptional-regulator-H-NS	gnl\|CDD\|182858	PRK10947, PRK10947, DNA-binding transcriptional regulator H-NS.	2.61324e-79
NZ_CP040363.1\|WP_002910097.1\|3821058_3823734_-\|bifunctional-acetaldehyde-CoA/alcohol-dehydrogenase	gnl\|CDD\|237515	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional.	0
NZ_CP040363.1\|WP_002910189.1\|3811440_3812118_+\|respiratory-nitrate-reductase-subunit-gamma	gnl\|CDD\|273030	TIGR00351, Respiratory_nitrate_reductase_2_gamma_chain., respiratory nitrate reductase, gamma subunit. Involved in anerobic respiration the gene product catalyzes the reaction (reduced acceptor + NO3- = Acceptor + nitrite). Another possible role_id for this gene product is in nitrogen fixation (Role_id:160). [Energy metabolism, Anaerobic].	2.8765e-130
NZ_CP040363.1\|WP_002910109.1\|3815526_3815985_-\|YchJ-family-protein	gnl\|CDD\|234966	PRK01617, PRK01617, hypothetical protein; Provisional.	7.51559e-107

>NZ_CP040363.1|WP_004152249.1|3813118_3813562_+|Lrp/AsnC-family-transcriptional-regulator
MNDVLDEIDRAILTCLTQDARVSLKVLSARVGLTSPSTAERVKRLEERGVIQGYGARVNLAALGYSLQALVRVRPLPGLLQKVDKYIQAMPECIESDKVTGEDCFVMRLVVRDIAQLDTLLDGLAEYAQCNTSVVKSSPVKRRLPPL
>NZ_CP040363.1|WP_004189450.1|3812114_3813011_-|DMT-family-transporter
MQLTRGVWQMSLAMIISGSIGAFVLLSGLPVTDVVFWRCLIGALTLLVFIVLSRQPFSRLTRFTLALAVIGGAALVVNWLLLFAAYSRISIGMATVVYNTQPFMLVLMGMVLGERVSAVKWGWLLLAFGGVVILLSSELMPAHEEGLTTGVLLALGAAFFYALTAIIARKLHPLPAQHIAFIQVLVGVVMLLPLVHAPELTASFPWRYLLILGIVHTGIMYQLLYSAIQKLPTPVTGSLSFIYPLVAMVVDYLVFHHALSAVQLLGGMLILFAAAGNNLGWGEKKPRRGGVSEQSRAS
>NZ_CP040363.1|WP_002910189.1|3811440_3812118_+|respiratory-nitrate-reductase-subunit-gamma
MHFLNMFFFDIYPYIAGSVFLIGSWLRYDYGQYTWRAASSQMLDRKGMNLASNLFHIGILGIFAGHFLGMLTPHWMYESFLPIDVKQKMAMIAGGACGVMTLVGGLLLLKRRLLSPRVRATTTGADILILSLLMVQCALGLLTIPFSAQHMDGSEMMKLVGWAQSVVTFHGGASQHLDGVAFIFRVHLVLGMTLFLLFPFSRLVHIWSAPVEYLTRKYQIVRARR
>NZ_CP040363.1|WP_002910191.1|3810730_3811441_+|nitrate-reductase-molybdenum-cofactor-assembly-chaperone
MIELVIVSRLLEYPDAALWQHQQEMFEALASSEKLSKEDAHALGVFLRDLVAQDPLDAQAAYSELFDRGRATSLLLFEHVHGESRDRGQAMVDLMAQYERHGLLLDSHELPDHLPLYLEYLAQLPEEEALGGLRDVAPILGLLSARLQQRESRYAVLFELLLKLANTQVDSQKVAEKIADEARDDTPQALDAVWEEEQVKFFADQGCGESEISAHQRRFAGAVAPQYLNISNGGQQ
>NZ_CP040363.1|WP_002910193.1|3809198_3810734_+|nitrate-reductase-subunit-beta
MKIRSQVGMVLNLDKCIGCHTCSVTCKNVWTSREGMEYAWFNNVESKPGVGFPNDWENQEKWKGGWIRKINGKLQPRMGNRAMLLGKIFANPHLPGIDDYYEPFDYDYQNLHNAPESKHQPIARPRSLITGQRMDKITSGPNWEEILGGEFEKRAKDQNFDNMQKAMYGQFENTFMMYLPRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFNWKSGKSEKCIFCYPRIESGMPTVCSETCVGRIRYLGVLLYDADAIENAASTENEKDLYQRQLDVFLDPNDPKVIEQALKDGVPQGVIEAAQQSPVYKMAMDWKLALPLHPEYRTLPMVWYVPPLSPIQSAADAGELGSNGILPDVESLRIPVQYLANLLTAGDTQPVLLALKRMLAMRHYKRAETVDGVVDTRALEEVGLSEAQAQEMYRYLAIANYEDRFVVPSSHREQAREAFPEKNGCGFSFGDGCHGSDSQFNLFNSRRIDAIDVTSKTEPHA
>NZ_CP040363.1|WP_032418823.1|3805458_3809202_+|nitrate-reductase-subunit-alpha
MSKFLDRFRYFKQKGETFADGHGQLLNTNRDWEDGYRQRWQHDKIVRSTHGVNCTGSCSWKIYVKNGLVTWETQQTDYPRTRPDLPNHEPRGCPRGASYSWYLYSANRLKYPLMRKRLMKMWREAKVQHSDPVEAWASIIEDADKAKSFKQARGRGGFVRSSWQEVNELIAASNVYTVKTYGPDRVAGFSPIPAMSMVSYASGARYLSLIGGTCLSFYDWYCDLPPASPMTWGEQTDVPESADWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVAITPDYAEIAKLCDLWLAPKQGTDAAMALAMGHVMLREFHLDKPSQYFTDYVRRYTDMPMLVMLEERDGYYAAGRTLRASDLVDSLGQENNPEWKTVAFDEKGDMTVPNGSLGFRWGDKGKWNLEQRDGKTGEEIELRLSLLGSHDEVANVGFPYFGGEGSEHFNKVDLENILLHKLPAKRLQLADGSTALVTTVYDLTMANYGLERGLNDDNCAAGYDEVKAYTPAWAEKITGVSRAHIIRTAREFADNADKTHGRSMIIVGAGLNHWFHLDMNYRGLINMLIFCGCVGQSGGGWAHYVGQEKLRPQTGWQPLAFALDWQRPARHMNSTSYFYNHSSQWRYETVTAQELLSPMADKSRYSGHLIDFNVRAERMGWLPSAPQLGVNPLRIADEAKKAGMTPVDYTVKSLKEGSIRFAAEQPENGKNHPRNLFIWRSNLLGSSGKGHEYMLKYLLGTENGIQGKDLGKQGGVKPEEVEWRDNGLDGKLDLVVTLDFRLSSTCLYSDIVLPTATWYEKDDMNTSDMHPFIHPLSAAVDPAWESKSDWEIYKGIAKKFSEVCMGHLGKETDVVTLPIQHDSAAEMAQPLDVKDWKKGECDLIPGKTAPHIIPVERDYPATYERFTSIGPLLETIGNGGKGIAWNTQSEMDLLRKLNYTKAEGPAKGQPKLETAIDAAEMILTLAPETNGQVAVKAWQALSEITGREHTHLALNKEDEKIRFRDIQAQPRKIISSPTWSGLEDEHVSYNAGYTNVHELIPWRTLTGRQSLYQDHQWMRDFGESLLVYRPPIDTRSVKAVMGEKSNGNPEKALNFLTPHQKWGIHSTYSDNLLMLTLSRGGPIVWMSEADAKDLGIEDNDWIEVFNANGALTARAVVSQRVPAGMTMMYHAQERIVNLPGSEITGQRGGIHNSVTRITPKPTHMIGGYGHLAYGFNYYGTVGSNRDEFVVVRKMKNINWLDGEGNDQVQESVK
>NZ_CP040363.1|WP_004175568.1|3803664_3805053_+|NarK-family-nitrate/nitrite-MFS-transporter
MSQSSLPEKANRSVITDWRPEDPEFWQQRGHRVASRNLWISVPCLLLAFCVWMLFSAVAVNLNKVGFQFTTDQLFMLTALPALSGALLRVPYAFMVPLFGGRRWTAFSTGIMIVPCVWLGFAVQDTSTPFSIFVIISLLCGFAGANFASSMANISFFFPKAKQGGALGVNGGLGNMGVSVMQLVAPLVVSISIFAVFGGNGSEQPDGSMLYLENAAWIWVPFLIIFTLAAWFFMNDLSASKASLSEQLPVLKRLHLWIMALLYLATFGSFIGFSAGFAMLSKTQFPDVQILHYAFFGPFIGALARSMGGAISDRLGGTRVTLVNFVVMAVFCALLFLTLPTNGQGGNFIAFFAVFMVLFLTAGLGSASTFQMISVIFRKLTMDRVKAQGGSEAQAMREAATDTAAALGFISAIGAIGGFFIPKAFGISLDLTGSPAGAMKVFLVFYIACVVITWAVYGRKRQ
>NZ_CP040363.1|WP_046653762.1|3801574_3803353_-|nitrate/nitrite-two-component-system-sensor-histidine-kinase-NarX
MLKRLFTPLTLVNQLALIVLLATIIGVASMAISARLVNGVQGSAHAINKAGSLRMQSYRLLAAIPLNENDQKLVADMTATVFSPELQNSARRDGQEIQLKALQQYWQLALAPGMQRAVNQAEVAQDVADFVDRIDQLVTAFDHTTEQRIERVVWIHRILAIGMALLLIFTIIWLRARLLRPWKQLLSMARAVSQRDFTQRAHISGRNEMATLGMALNNMSEELAESYAVLERRVQEKTAGLEQKNEILAFLWQANRRLHSSAPLCERISPVLNGLQGLTLLRDIEVRVYDLEDEDNHQEFTCHSDDDCDDKGCYLCPRNLPPLPDGGTTLKWRLSDAHSQYGILLATLPVGRHLSHDQQQLVDTLVEQLTSTLALDRHQEKQQQLIVMEERATIARELHDSIAQSLSCMKMQVSCLQMQGDALPTESRQLLGQIRNELNTSWAQLRELLTTFRLQLTEPGLRPALEASCQEYSAHFGFTVQLDYQLPPRFVPSHQAIHLLQIAREALSNALKHASATEVTVTVSQRDNQVRLVVADNGRGVPDHAERSNHYGLIIMRDRAQSLRGDCQVRRRETGGTEVIVTFIPEKTFSIQ
>NZ_CP040363.1|WP_002910198.1|3800913_3801564_-|two-component-system-response-regulator-NarL
MSQQERATILLIDDHPMLRTGVKQLISMAPDIQVIGEASNGAQGIELAESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRVVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAGEMVLSEALTPVLAASLRANRATSDRDISQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQERIF
>NZ_CP040363.1|WP_004180383.1|3799534_3800917_+|YchO/YchP-family-invasin
MAVSFRLLPTLTFLLLLPGVPVWALTASDTTRPAQAQDPLPDMGIAPQVDDDARHFAEVAKKFGEASMSDNGLTAGEQAQLFAISKIGNEVSHQLESWLSPWGNANVDLLVDKEGKFTGSKGSWFVPLQDNDRYLTWNQYSVTRREHDLVGNIGLGQRWRVGGWLLGYNSFYDKVLSESLARGSVGAEAWGEYLRLSANYYHPLGDWQLRDNQTQEQRMAAGYDVTAQARLPFYQHINTSVSVEQYFGDSVDLFHSGTGYHNPVAVSVGLNYTPVPLVTVTAKHKQGENGVSQNNVGLKLNYRFGVPLKQQLAADEVAISNSLRGSRFDSPERDNLPVVEYRQRKNLTVYLATPPWDLQSGETVQLKLQIHSLHGIKALHWQGDTQALSLTPPVDASSPDGWSIIMPVWNSEPGAANRWRLSVVVEDKQGQRVSSNEIALALTEPLVKFTTPGVSWTDSP
>NZ_CP040363.1|WP_004151854.1|3814641_3815484_-|formyltetrahydrofolate-deformylase
MHSLQRKVLRTICPDQKGLIARITNICYKHELNIVQNNEFVDHRTGRFFMRTELEGIFNDATLLADLDSALPEGSIRELNPAGRRRVVILVTKEAHCLGDLLMKANYGGLDVDIAAVIGNHDTLRSLVERFGIPFELVSHEGLSREEHDQRMGDAIAAHEPDYVVLAKYMRVLTPEFVARFPNKIINIHHSFLPAFIGARPYHQAYERGVKIIGATAHYVNDNLDEGPIIMQDVIHVDHTYTAEDMMRAGRDVEKNVLSRALYQVLAQRVFVYGNRTIIL
>NZ_CP040363.1|WP_002910109.1|3815526_3815985_-|YchJ-family-protein
MSQLCPCGSALEYSSCCQRYLSGAELAPGPSQLMRSRYSAFVMKDADYLIKTWHPSCQAQQFRAELEKGFSQTEWLGLTLFASDEGRAPNEGFVSFVARFNDNNRPGAIIERSRFLKENGQWYYIDGTRPLIGRNDPCPCGSGKKFKKCCGQ
>NZ_CP040363.1|WP_002910108.1|3816097_3817000_+|patatin-like-phospholipase-RssA
MRKLKIGLALGAGAARGWSHIGVINALQRAGIEIDIVAGCSIGSLVGAAYACNRLPALESWVCSFSNWDVLKLMDLSWRRGGLLRGEKVFNHYRRIMPVTEIERCERRFAAVATNLSTGRELWFTEGDLHLAIRASCSMPGLMSPVRHNGYWLVDGAVVNPVPVSLTRAMGADIVIAVDLQHDAHLMQQDLFSLETPRQEAEEKEGPWHTRLRARLTRMSSRRTAVTPTAMEIMTTSIQVLENRLKRNRMAGDPPDILLQPYCPQVSTLDFHRAGEAIAAGQLAVEKKMDELLPLVRTAV
>NZ_CP040363.1|WP_002910107.1|3817089_3818103_+|two-component-system-response-regulator-RssB
MTQPLAGKQILIVEDEPVFRSLLHGWLTSLGATTFQAEDGKDALHKMTEVHPDLMICDISMPRMNGLELVETLRNRGEQLPILMISATENMADIAKALRLGVQDVLLKPVKDFDRLRETVYACLYPAMFSSRVEEEERLFEDWDALVSNPIAASRLLQELQPPVQQEMSHCRIHYRQLVSADKPGLVLDIAPLSENDLAFYCLDVTRAGDNGVLAALLLRALFNGLLQEQLAHQGQRLPEMGSLLKQVNQLLRQANLPGQFPLLVGYYHSGLKNLILVSAGLNGTLNTGEHQIQISNGVPLGTLGDAYLNQISQRCTSWQCQIWGAGGRLRLMLSAE
>NZ_CP040363.1|WP_002910105.1|3818300_3819203_+|UTP--glucose-1-phosphate-uridylyltransferase-GalU
MAALNSKVRKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEKRVKRQLLEEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVGDEPVAVILPDVILDEYESDLSRDNLAEMISRFDETGASQIMVEPVEDVTAYGVVDCKGESLKPGESVPMVGVVEKPKADVAPSNLAVVGRYVLSADIWPLLAKTPPGAGDEIQLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYGIRHKTLGDDFKAWLETAVAK
>NZ_CP040363.1|WP_002910103.1|3819324_3819732_-|DNA-binding-transcriptional-regulator-H-NS
MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEENAAAAEIEERTRKLQQYREMLIADGIDPNELLSTMAAVKAGTKTKRAARPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI
>NZ_CP040363.1|WP_002910100.1|3820293_3820911_+|thymidine-kinase
MAQLYFYYSAMNAGKSTALLQSSYNYQERGMRTVVYTAEIDDRFGAGKVSSRIGLSSPARLYNPQTSLFDDIAAEHQLKPIHCVLVDESQFLTREQVHELSEVVDTLDIPVLCYGLRTDFRGELFTGSQYLLAWSDKLVELKTICFCGRKASMVLRLDQEGRPYNEGEQVVIGGNERYVSVCRKHYKEALSVGSLTKVQNQHRPC
>NZ_CP040363.1|WP_002910097.1|3821058_3823734_-|bifunctional-acetaldehyde-CoA/alcohol-dehydrogenase
MAVTNIAELNALVERVKKAQREYASFTQEQVDKIFRAAALAAADARIPLAKMAVAESGMGIVEDKVIKNHFASEYIYNAYKDEKTCGVLSEDDTFGTITIAEPIGIICGIVPTTNPTSTAIFKSLISLKTRNAIIFSPHPRAKEATNKAADIVLQAAIAAGAPKDLIGWIDQPSVELSNALMHHPDINLILATGGPGMVKAAYSSGKPAIGVGAGNTPVVIDETADIKRAVASVLMSKTFDNGVICASEQSVVVVDSVYDAVRERFASHGGYLLQGKELKAVQDIILKNGALNAAIVGQPAAKIAELAGFTVPATTKILIGEVTNVDESEPFAHEKLSPTLAMYRAKDFEDAVAKAEKLVAMGGIGHTSCLYTDQDNQPARVAYFGQMMKTARILINTPASQGGIGDLYNFKLAPSLTLGCGSWGGNSISENVGPKHLINKKTVAKRAENMLWHKLPKSIYFRRGSLPIALDEVITDGHKRALIVTDRFLFNNGYADQITSVLKAAGVETEVFFEVEADPTLTIVRKGADLANSFKPDVIIALGGGSPMDAAKIMWVMYEHPETHFEELALRFMDIRKRIYKFPKMGVKAKMVAITTTSGTGSEVTPFAVVTDDATGQKYPLADYALTPDMAIVDANLVMDMPKSLCAFGGLDAVTHALEAYVSVLASEFSDGQALQALKLLKEYLPASYHEGSKNPVARERVHSAATIAGIAFANAFLGVCHSMAHKLGSQFHIPHGLANALLICNVIRYNANDNPTKQTAFSQYDRPQARRRYAEIADHLGLSAPGDRTAAKIEKLLAWLESIKAELGIPKSIREAGVQEADFLAHVDKLSEDAFDDQCTGANPRYPLISELKQILLDTYYGREFVEGEAGAKAEVAPVKAEKKAKKSA
>NZ_CP040363.1|WP_032103886.1|3823811_3823997_+|hypothetical-protein
MHVNVYVEKSGRCFTDLLKKLYLFRFQVLLPSTLLVSSRLLTSEYKLRDLDQVLSLLIPFS
>NZ_CP040363.1|WP_002910095.1|3824210_3824858_+|YchE-family-NAAT-transporter
MTQSLFDFSAYFKFFIGLFALVNPVGIIPVFISMTSYQPAAVRNKTNLTANLSVAIILLTSLFLGDGILQIFGISIDSFRIAGGILVVTIAMSMISGKLGEDKQNKQEKSETAVRESIGVVPLALPLMAGPGAISSTIVWGTRYHSWVHLVGFSLAIAVFALCCWGIFRMAPWLVRLLGQTGINVITRIMGLLLMALGIEFIVTGIKALFPGLLS

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1137726 : 1168334

Stx2-converting_phage(20.0%)

integrase,transposase

attL 1131702:1131718|attR 1170378:1170394

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1131702:1131718	attL	NA	NA	NA	NA
WP_125077500.1\|1137726_1137867_-\|transposase	transposase	NA	NA	NA	NA
WP_077266648.1\|1137859_1138024_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A1B0Z042	Pseudomonas_phage	6.5e-08	66.7
WP_053091482.1\|1138024_1138396_-	hypothetical protein	NA	NA	NA	NA
WP_004189163.1\|1138470_1138911_+	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	2.6e-19	60.3
WP_004189161.1\|1138907_1139258_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	5.2e-39	63.8
WP_004902302.1\|1139288_1140881_+\|transposase	IS66-like element ISKox1 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.2e-176	61.8
WP_004213807.1\|1140936_1141905_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_069135948.1\|1143249_1143654_-\|transposase	transposase	Q76S41	Shigella_phage	1.0e-22	48.3
WP_021314759.1\|1143873_1145127_+	ADP-ribosylglycohydrolase family protein	A0A1S6UB21	Serratia_phage	1.1e-62	44.8
WP_021314760.1\|1145123_1146050_+	hypothetical protein	NA	NA	NA	NA
WP_021314762.1\|1148593_1150300_-	dynamin family protein	NA	NA	NA	NA
WP_049193204.1\|1150299_1152501_-	hypothetical protein	NA	NA	NA	NA
WP_035015591.1\|1155478_1155679_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_069135940.1\|1155665_1158560_+	DEAD/DEAH box helicase family protein	A0A2H4J643	uncultured_Caudovirales_phage	6.5e-284	53.9
WP_094314883.1\|1158717_1159647_+	Abi family protein	A3QSC6	Clostridium_virus	7.4e-32	32.0
WP_069135936.1\|1159664_1161500_+	AIPR family protein	D0UIM0	Aggregatibacter_phage	1.9e-39	26.9
WP_069135965.1\|1161557_1163264_+	site-specific DNA-methyltransferase	A0A0K1LNZ9	Escherichia_phage	6.5e-159	61.6
WP_094314886.1\|1163291_1166024_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA
WP_074447408.1\|1167302_1168334_-\|transposase	IS630 family transposase	NA	NA	NA	NA
1170378:1170394	attR	NA	NA	NA	NA

DBSCAN-SWA_2

3447742 : 3454647

Planktothrix_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004180551.1\|3447742_3448606_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.7e-10	27.5
WP_004180550.1\|3448616_3449390_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.9e-26	36.7
WP_002912636.1\|3449630_3450524_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
WP_004144192.1\|3450769_3452131_-\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	1.8e-207	94.8
WP_004175198.1\|3452449_3453172_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
WP_048969138.1\|3453168_3454647_-	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	8.5e-30	28.3

DBSCAN-SWA_3

3704613 : 3761923

Microcystis_phage(30.0%)

transposase,plate,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_019705163.1\|3704613_3705360_+\|protease	proteasome-type protease	NA	NA	NA	NA
WP_026008344.1\|3705798_3706785_+	fatty acid desaturase	NA	NA	NA	NA
WP_004189318.1\|3706777_3707578_+	PhnD/SsuA/transferrin family substrate-binding protein	NA	NA	NA	NA
WP_004145488.1\|3707615_3707738_-	nitrilotriacetate monooxygenase	NA	NA	NA	NA
WP_004148811.1\|3707765_3707951_-	hypothetical protein	NA	NA	NA	NA
WP_002910764.1\|3708355_3709297_+	transcriptional regulator TdcA	NA	NA	NA	NA
WP_032441318.1\|3709390_3710380_+	bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA	NA	NA	NA
WP_004200322.1\|3710405_3711737_+	threonine/serine transporter TdcC	NA	NA	NA	NA
WP_029602072.1\|3711764_3712973_+	propionate kinase	NA	NA	NA	NA
WP_004175487.1\|3713001_3715296_+	formate C-acetyltransferase	A0A2P0VNR5	Tetraselmis_virus	1.1e-158	41.7
WP_019705160.1\|3715725_3716841_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004175489.1\|3716950_3717865_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_004148804.1\|3717874_3719161_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA
WP_004148803.1\|3719157_3720033_+	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	9.5e-05	41.5
WP_004175491.1\|3720029_3720749_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.5e-11	26.0
WP_002910720.1\|3720754_3721648_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004180410.1\|3721931_3723575_+	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	5.7e-136	50.4
WP_002910717.1\|3723624_3724101_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_002910715.1\|3724201_3725128_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004175494.1\|3725431_3726727_+	MFS transporter	Q6JIH2	Burkholderia_virus	9.6e-62	36.8
WP_019705158.1\|3726741_3727548_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004152315.1\|3727522_3728422_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_046653733.1\|3728531_3729014_-	cold shock domain-containing protein	NA	NA	NA	NA
WP_032435991.1\|3729204_3729903_+	RluA family pseudouridine synthase	A0A2H4UV25	Bodo_saltans_virus	2.6e-05	27.2
WP_004899028.1\|3729928_3730513_-	DUF2058 domain-containing protein	NA	NA	NA	NA
WP_002910650.1\|3730582_3730912_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA
WP_015874926.1\|3730998_3731244_+	hypothetical protein	NA	NA	NA	NA
WP_046653737.1\|3731481_3732822_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_142778421.1\|3732818_3733472_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_046653741.1\|3733475_3735173_+	OmpA family protein	NA	NA	NA	NA
WP_040216883.1\|3735634_3738121_+	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_032430450.1\|3738144_3739500_+	S-type Pyocin	NA	NA	NA	NA
WP_002910593.1\|3739500_3740010_+	hypothetical protein	NA	NA	NA	NA
WP_071557516.1\|3740216_3740573_+	hypothetical protein	NA	NA	NA	NA
WP_046653749.1\|3740667_3741174_+	hypothetical protein	NA	NA	NA	NA
WP_040216887.1\|3741257_3741767_+	hypothetical protein	NA	NA	NA	NA
WP_040216891.1\|3741763_3741955_+	hypothetical protein	NA	NA	NA	NA
WP_023158126.1\|3741970_3743161_+	hypothetical protein	NA	NA	NA	NA
WP_015958629.1\|3743184_3743490_+	hypothetical protein	NA	NA	NA	NA
WP_014343203.1\|3743511_3744405_+	SUMF1/EgtB/PvdO family nonheme iron enzyme	A0A075BSL8	Microcystis_phage	8.8e-14	28.8
WP_142778422.1\|3744588_3745482_+	SUMF1/EgtB/PvdO family nonheme iron enzyme	A0A075BSL8	Microcystis_phage	1.7e-12	27.3
WP_004184615.1\|3745656_3746550_+	SUMF1/EgtB/PvdO family nonheme iron enzyme	A0A075BSL8	Microcystis_phage	2.2e-12	27.1
WP_014343194.1\|3748295_3748538_+	hypothetical protein	NA	NA	NA	NA
WP_004175522.1\|3748835_3749102_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_032418816.1\|3753791_3755555_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_004180392.1\|3755554_3756601_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_040242388.1\|3756575_3757118_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_019724967.1\|3757120_3757564_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_048265698.1\|3757583_3758999_+	membrane protein	NA	NA	NA	NA
WP_002910453.1\|3759130_3760045_+	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_009485740.1\|3760128_3760458_+	hypothetical protein	NA	NA	NA	NA
WP_102014144.1\|3760754_3761923_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	1.5e-167	90.1

DBSCAN-SWA_4

4429469 : 4440356

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_117074173.1\|4429469_4432577_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.6
WP_004176258.1\|4432631_4433897_+	MFS transporter	NA	NA	NA	NA
WP_001620097.1\|4433927_4435016_-	AAA family ATPase	A0A077SLJ9	Escherichia_phage	8.0e-211	100.0
WP_004176262.1\|4435102_4435363_-	hypothetical protein	A0A077SK33	Escherichia_phage	5.4e-41	98.8
WP_001620095.1\|4435659_4436520_+	class A broad-spectrum beta-lactamase SHV-1	A0A077SL40	Escherichia_phage	4.4e-156	99.7
WP_002210513.1\|4436540_4437302_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_023148136.1\|4437292_4437526_+	hypothetical protein	NA	NA	NA	NA
WP_002903955.1\|4437563_4438466_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	2.6e-159	99.7
WP_004183946.1\|4438477_4439743_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	6.6e-233	99.3
WP_117074174.1\|4439735_4440356_+	aldolase	A0A077SK32	Escherichia_phage	4.0e-114	99.5

DBSCAN-SWA_5

4732237 : 4775674

Salmonella_phage(24.07%)

integrase,holin,tail,terminase

attL 4718756:4718771|attR 4772980:4772995

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4718756:4718771	attL	NA	NA	NA	NA
WP_016946669.1\|4732237_4732618_-	hypothetical protein	A0A286S2A6	Klebsiella_phage	3.1e-69	95.2
WP_064164728.1\|4732627_4733110_-	DUF1833 family protein	A0A286S2B1	Klebsiella_phage	4.2e-79	93.8
WP_117085465.1\|4733290_4733755_-	hypothetical protein	A0A286S298	Klebsiella_phage	8.7e-58	67.8
WP_023327998.1\|4734069_4734405_-	hypothetical protein	NA	NA	NA	NA
WP_142778441.1\|4734488_4737386_-\|tail	phage tail protein	A0A2H4J107	uncultured_Caudovirales_phage	4.6e-104	32.7
WP_077259120.1\|4737459_4737942_-	zinc ribbon domain-containing protein	I6PDJ9	Cronobacter_phage	1.7e-19	44.3
WP_004217333.1\|4737938_4738295_-	hypothetical protein	A0A1V0E5P9	Salmonella_phage	1.1e-44	75.0
WP_016831940.1\|4738371_4738578_-	hypothetical protein	NA	NA	NA	NA
WP_117085466.1\|4738715_4739198_-	hypothetical protein	NA	NA	NA	NA
WP_115656539.1\|4739251_4740424_-	Ig domain-containing protein	A0A0D4DBN5	Acinetobacter_phage	5.5e-24	27.0
WP_004190640.1\|4740447_4740840_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
WP_008807839.1\|4740836_4741388_-	hypothetical protein	G8C7Q1	Escherichia_phage	7.8e-29	39.9
WP_117085467.1\|4741389_4741773_-	glutamate 5-kinase	A0A0S2SYG4	Pseudomonas_phage	1.2e-20	45.2
WP_004190646.1\|4741759_4741993_-	hypothetical protein	A0A2H4J0Y9	uncultured_Caudovirales_phage	5.8e-10	47.1
WP_004190649.1\|4742002_4742257_-	hypothetical protein	J9Q7U0	Salmonella_phage	8.0e-21	52.4
WP_004216825.1\|4742258_4742654_-	hypothetical protein	A0A1B1P9F2	Acinetobacter_phage	1.1e-13	39.3
WP_004190653.1\|4742975_4743929_-	Ig domain-containing protein	A0A1B0VMF8	Pseudomonas_phage	5.0e-132	74.4
WP_004216823.1\|4743939_4744725_-	hypothetical protein	A0A1B0VMG1	Pseudomonas_phage	1.9e-68	64.7
WP_117085468.1\|4744809_4745922_-	hypothetical protein	I6PD76	Cronobacter_phage	9.6e-111	54.9
WP_008807834.1\|4745905_4747306_-	DUF4055 domain-containing protein	A0A1B0VMH0	Pseudomonas_phage	9.2e-127	53.3
WP_004190663.1\|4747305_4748613_-\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	3.6e-149	58.9
WP_117085469.1\|4748590_4749583_-\|terminase	terminase small subunit	A0A0U2RXW9	Escherichia_phage	2.2e-29	34.9
WP_117041090.1\|4750131_4750314_-	hypothetical protein	NA	NA	NA	NA
WP_117041089.1\|4750445_4750691_-	DUF2560 family protein	A0A286N2R1	Klebsiella_phage	3.3e-32	92.6
WP_019405025.1\|4751504_4751699_-	hypothetical protein	A0A286SGR9	Klebsiella_phage	1.4e-25	89.1
WP_004190672.1\|4751649_4751925_-	hypothetical protein	A0A286N2Q8	Klebsiella_phage	2.2e-08	72.5
WP_004190674.1\|4751921_4752266_-	hypothetical protein	A0A286N2Q7	Klebsiella_phage	2.0e-38	80.7
WP_004184488.1\|4752262_4752802_-	glycoside hydrolase family 108 protein	A0A286N2Q6	Klebsiella_phage	2.3e-102	100.0
WP_125961861.1\|4752798_4753098_-\|holin	holin	A0A286N2Q5	Klebsiella_phage	8.4e-46	98.0
WP_101999885.1\|4754351_4755041_-	antiterminator	I6PDF8	Cronobacter_phage	5.1e-62	54.1
WP_009483890.1\|4755037_4755178_-	YlcG family protein	NA	NA	NA	NA
WP_009483889.1\|4755174_4755813_-	hypothetical protein	H6WRY9	Salmonella_phage	3.2e-74	68.9
WP_032413853.1\|4755805_4755976_-	NinE family protein	G8C7V4	Escherichia_phage	2.8e-14	71.4
WP_023341866.1\|4755981_4756578_-	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	2.3e-55	53.3
WP_101999883.1\|4756731_4757478_-	hypothetical protein	A0A0P0ZDC0	Stx2-converting_phage	6.3e-66	58.0
WP_142778442.1\|4757547_4758222_-	hypothetical protein	H6WRU8	Salmonella_phage	8.0e-36	39.4
WP_004136225.1\|4758237_4758411_-	Arc family DNA-binding protein	I6R9A8	Salmonella_phage	3.9e-19	85.7
WP_101999882.1\|4758523_4758886_+	Arc family DNA-binding protein	H6WRU6	Salmonella_phage	3.3e-12	65.6
WP_101999881.1\|4759315_4761055_-	DUF262 domain-containing protein	NA	NA	NA	NA
WP_101999880.1\|4761284_4761764_-	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	2.4e-71	82.9
WP_101999879.1\|4761760_4762174_-	hypothetical protein	R9TME7	Aeromonas_phage	1.9e-08	35.0
WP_101999878.1\|4762170_4762464_-	protein ren	O48423	Enterobacteria_phage	2.5e-26	64.5
WP_065907826.1\|4762460_4763330_-	ATP-binding protein	K7PLU3	Enterobacteria_phage	5.2e-96	70.1
WP_004141720.1\|4764254_4764575_-	hypothetical protein	A0A0M4RU01	Salmonella_phage	3.8e-36	68.9
WP_004178811.1\|4764614_4764848_-	helix-turn-helix domain-containing protein	A0A2H4FNF3	Salmonella_phage	3.0e-22	70.4
WP_024622727.1\|4764952_4765642_+	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	1.0e-86	70.6
WP_020804196.1\|4765664_4765784_+	hypothetical protein	NA	NA	NA	NA
WP_049594397.1\|4765983_4766265_+	hypothetical protein	A4KWR2	Enterobacteria_phage	1.5e-36	82.8
WP_101969804.1\|4766502_4766784_+	hypothetical protein	A0A2H4FNB7	Salmonella_phage	3.8e-08	64.4
WP_065907828.1\|4766821_4767025_-	hypothetical protein	A0A192Y6Q5	Salmonella_phage	2.3e-18	70.1
WP_074184067.1\|4767462_4767669_+	cell division inhibitor protein	A0A0M4S6W3	Salmonella_phage	9.0e-31	92.6
WP_117085470.1\|4767749_4768034_+	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	5.0e-40	79.8
WP_016831908.1\|4768050_4768797_+	phage recombination protein Bet	A0A0M4RD39	Salmonella_phage	3.1e-65	67.7
WP_008807811.1\|4768793_4769417_+	exonuclease	A0A0S2SY31	Pseudomonas_phage	9.0e-58	59.7
WP_032426563.1\|4769445_4769973_+	phage N-6-adenine-methyltransferase	Q9ZWX6	Enterobacteria_phage	1.1e-56	61.6
WP_016831906.1\|4769969_4770191_+	hypothetical protein	NA	NA	NA	NA
WP_117085471.1\|4770187_4770844_+	hypothetical protein	M1F3E2	Salmonella_phage	2.9e-67	62.7
WP_016831904.1\|4770840_4771149_+	hypothetical protein	I6PD68	Cronobacter_phage	1.6e-23	56.9
WP_004892750.1\|4771156_4771396_+	DUF4060 family protein	M9P0E0	Enterobacteria_phage	8.0e-23	70.1
WP_004190725.1\|4771405_4771720_+	hypothetical protein	K7PM28	Enterobacteria_phage	1.6e-10	50.8
WP_004892753.1\|4771616_4772804_-\|integrase	site-specific integrase	K7PGY1	Enterobacteria_phage	4.2e-120	52.2
WP_004151901.1\|4772980_4773871_+	peptide ABC transporter permease SapC	NA	NA	NA	NA
4772980:4772995	attR	NA	NA	NA	NA
WP_004140266.1\|4773870_4774863_+	peptide ABC transporter ATP-binding protein SapD	G9BWD6	Planktothrix_phage	3.0e-07	27.2
WP_004140269.1\|4774864_4775674_+	peptide ABC transporter ATP-binding protein SapF	A0A2H4PQG7	Staphylococcus_phage	2.1e-14	28.9

DBSCAN-SWA_6

5167200 : 5176663

Brazilian_cedratvirus(16.67%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016532437.1\|5167200_5168922_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3
WP_002898014.1\|5168966_5169668_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001040187.1\|5170021_5170240_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_002896522.1\|5170359_5172639_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
WP_002896520.1\|5172669_5172987_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
WP_002896516.1\|5173312_5173534_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
WP_004150848.1\|5173610_5175551_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	1.9e-37	40.5
WP_002896440.1\|5175547_5176663_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP040362

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3535 : 57161

Escherichia_phage(26.67%)

integrase,transposase

attL 46183:46196|attR 58133:58146

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001067784.1\|3535_4240_-\|transposase	IS6-like element IS1006 family transposase	A0A077SL39	Escherichia_phage	1.9e-120	85.8
WP_001447541.1\|5164_6049_+	DUF3363 domain-containing protein	NA	NA	NA	NA
WP_000214122.1\|6265_7480_+	chloramphenicol/florfenicol efflux MFS transporter FloR	S4TR35	Salmonella_phage	1.2e-18	28.7
WP_000743213.1\|7753_7978_-	hypothetical protein	NA	NA	NA	NA
WP_001446887.1\|7974_8712_-	recombinase family protein	NA	NA	NA	NA
WP_001550559.1\|8818_9310_+	hypothetical protein	NA	NA	NA	NA
WP_001067855.1\|9343_10048_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000113282.1\|10059_10716_-	tetracycline resistance transcriptional repressor TetR(D)	NA	NA	NA	NA
WP_108996614.1\|10811_11996_+	tetracycline efflux MFS transporter Tet(D)	NA	NA	NA	NA
WP_020324562.1\|13688_14393_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	9.9e-138	99.6
WP_124108784.1\|14978_15719_+	hypothetical protein	NA	NA	NA	NA
WP_004201232.1\|16298_16985_+	NYN domain-containing protein	NA	NA	NA	NA
WP_004201234.1\|17122_17860_+	hypothetical protein	NA	NA	NA	NA
WP_004201235.1\|18379_19849_-	HNH endonuclease	G0X580	Salmonella_phage	5.5e-21	51.3
WP_001749988.1\|20605_21175_-	recombinase family protein	E5FFF9	Burkholderia_phage	5.2e-36	43.2
WP_015344971.1\|21314_21599_-	hypothetical protein	NA	NA	NA	NA
WP_000845048.1\|21567_22581_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_063840321.1\|22872_23427_+	fluoroquinolone-acetylating aminoglycoside 6'-N-acetyltransferase AAC(6')-Ib-cr5	NA	NA	NA	NA
WP_001749986.1\|23523_23976_+	NAD(+)--rifampin ADP-ribosyltransferase Arr-3	NA	NA	NA	NA
WP_001749985.1\|24108_24582_+	trimethoprim-resistant dihydrofolate reductase DfrA27	G3MBI7	Bacillus_virus	1.4e-15	29.1
WP_001749984.1\|24762_25608_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA16	NA	NA	NA	NA
WP_000679427.1\|25724_26072_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000259031.1\|26065_26905_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000050481.1\|27309_28851_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_001749993.1\|29315_30224_+	SDR family oxidoreductase	F2NZ40	Diadromus_pulchellus_ascovirus	2.5e-77	52.3
WP_001749994.1\|30315_30960_-	quinolone resistance pentapeptide repeat protein QnrB6	NA	NA	NA	NA
WP_000679427.1\|31190_31538_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000259031.1\|31531_32371_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000050481.1\|32775_34317_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_001749994.1\|35779_36424_-	quinolone resistance pentapeptide repeat protein QnrB6	NA	NA	NA	NA
WP_000679427.1\|36654_37002_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000259031.1\|36995_37835_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_001993321.1\|37764_37944_-	hypothetical protein	NA	NA	NA	NA
WP_000376623.1\|37962_38463_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001297012.1\|38768_38882_-	hypothetical protein	NA	NA	NA	NA
WP_001389365.1\|38969_39734_+\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_024139167.1\|39775_39988_+	hypothetical protein	NA	NA	NA	NA
WP_001749969.1\|40000_41209_+	type II site-specific deoxyribonuclease	E5E3X4	Burkholderia_phage	1.2e-34	42.5
WP_001749967.1\|43057_43264_-	hypothetical protein	NA	NA	NA	NA
WP_071549088.1\|43268_43781_-	restriction endonuclease	NA	NA	NA	NA
WP_071549086.1\|44454_44715_-	hypothetical protein	NA	NA	NA	NA
WP_001039463.1\|45270_45657_+	hypothetical protein	NA	NA	NA	NA
WP_142778360.1\|45665_45905_+	plasmid stabilization protein	NA	NA	NA	NA
46183:46196	attL	NA	NA	NA	NA
WP_094686391.1\|47608_47803_+	hypothetical protein	NA	NA	NA	NA
WP_032621004.1\|51772_52819_+	hypothetical protein	NA	NA	NA	NA
WP_000493378.1\|55246_55597_+	hypothetical protein	NA	NA	NA	NA
WP_000015958.1\|56384_57161_+\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	6.4e-53	92.9
58133:58146	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP040363

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP040362

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection