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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP036282 Rhodoferax sp. Gr-4 chromosome, complete genome 5 crisprs PD-DExK,DEDDh,DinG,WYL,csa3 5 1 5 0

Results visualization

1. NZ_CP036282
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP036282_1 1939614-1939726 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP036282_2 4114377-4114471 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP036282_5 4117854-4117924 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP036282_4 4117422-4117517 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP036282_3 4116933-4117076 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP036282_3 3.1|4116956|25|NZ_CP036282|CRISPRCasFinder 4116956-4116980 25 NZ_CP036282.1 4115738-4115762 0 1.0
NZ_CP036282_3 3.1|4116956|25|NZ_CP036282|CRISPRCasFinder 4116956-4116980 25 NZ_CP036282.1 4118174-4118198 0 1.0
NZ_CP036282_3 3.1|4116956|25|NZ_CP036282|CRISPRCasFinder 4116956-4116980 25 NZ_CP036282.1 4119392-4119416 0 1.0
NZ_CP036282_3 3.1|4116956|25|NZ_CP036282|CRISPRCasFinder 4116956-4116980 25 NZ_CP036282.1 4120610-4120634 0 1.0
NZ_CP036282_3 3.1|4116956|25|NZ_CP036282|CRISPRCasFinder 4116956-4116980 25 NZ_CP036282.1 4121828-4121852 0 1.0
NZ_CP036282_3 3.1|4116956|25|NZ_CP036282|CRISPRCasFinder 4116956-4116980 25 NZ_CP036282.1 4123046-4123070 0 1.0
NZ_CP036282_3 3.1|4116956|25|NZ_CP036282|CRISPRCasFinder 4116956-4116980 25 NZ_CP036282.1 4124264-4124288 0 1.0
NZ_CP036282_3 3.1|4116956|25|NZ_CP036282|CRISPRCasFinder 4116956-4116980 25 NZ_CP036282.1 4125482-4125506 0 1.0
NZ_CP036282_3 3.2|4117004|49|NZ_CP036282|CRISPRCasFinder 4117004-4117052 49 NZ_CP036282.1 4115786-4115834 0 1.0
NZ_CP036282_3 3.2|4117004|49|NZ_CP036282|CRISPRCasFinder 4117004-4117052 49 NZ_CP036282.1 4118222-4118270 0 1.0
NZ_CP036282_3 3.2|4117004|49|NZ_CP036282|CRISPRCasFinder 4117004-4117052 49 NZ_CP036282.1 4119440-4119488 0 1.0
NZ_CP036282_3 3.2|4117004|49|NZ_CP036282|CRISPRCasFinder 4117004-4117052 49 NZ_CP036282.1 4120658-4120706 0 1.0
NZ_CP036282_3 3.2|4117004|49|NZ_CP036282|CRISPRCasFinder 4117004-4117052 49 NZ_CP036282.1 4121876-4121924 0 1.0
NZ_CP036282_4 4.1|4117445|49|NZ_CP036282|CRISPRCasFinder 4117445-4117493 49 NZ_CP036282.1 4115009-4115057 0 1.0
NZ_CP036282_4 4.1|4117445|49|NZ_CP036282|CRISPRCasFinder 4117445-4117493 49 NZ_CP036282.1 4116227-4116275 0 1.0
NZ_CP036282_4 4.1|4117445|49|NZ_CP036282|CRISPRCasFinder 4117445-4117493 49 NZ_CP036282.1 4118663-4118711 0 1.0
NZ_CP036282_4 4.1|4117445|49|NZ_CP036282|CRISPRCasFinder 4117445-4117493 49 NZ_CP036282.1 4119881-4119929 0 1.0
NZ_CP036282_5 5.1|4117877|25|NZ_CP036282|CRISPRCasFinder 4117877-4117901 25 NZ_CP036282.1 4115441-4115465 0 1.0
NZ_CP036282_5 5.1|4117877|25|NZ_CP036282|CRISPRCasFinder 4117877-4117901 25 NZ_CP036282.1 4116659-4116683 0 1.0
NZ_CP036282_5 5.1|4117877|25|NZ_CP036282|CRISPRCasFinder 4117877-4117901 25 NZ_CP036282.1 4119095-4119119 0 1.0
NZ_CP036282_5 5.1|4117877|25|NZ_CP036282|CRISPRCasFinder 4117877-4117901 25 NZ_CP036282.1 4120313-4120337 0 1.0
NZ_CP036282_5 5.1|4117877|25|NZ_CP036282|CRISPRCasFinder 4117877-4117901 25 NZ_CP036282.1 4121531-4121555 0 1.0
NZ_CP036282_5 5.1|4117877|25|NZ_CP036282|CRISPRCasFinder 4117877-4117901 25 NZ_CP036282.1 4122749-4122773 0 1.0
NZ_CP036282_5 5.1|4117877|25|NZ_CP036282|CRISPRCasFinder 4117877-4117901 25 NZ_CP036282.1 4123967-4123991 0 1.0
NZ_CP036282_5 5.1|4117877|25|NZ_CP036282|CRISPRCasFinder 4117877-4117901 25 NZ_CP036282.1 4125185-4125209 0 1.0
NZ_CP036282_2 2.1|4114400|49|NZ_CP036282|CRISPRCasFinder 4114400-4114448 49 NZ_CP036282.1 4115009-4115057 1 0.98
NZ_CP036282_2 2.1|4114400|49|NZ_CP036282|CRISPRCasFinder 4114400-4114448 49 NZ_CP036282.1 4116227-4116275 1 0.98
NZ_CP036282_2 2.1|4114400|49|NZ_CP036282|CRISPRCasFinder 4114400-4114448 49 NZ_CP036282.1 4118663-4118711 1 0.98
NZ_CP036282_2 2.1|4114400|49|NZ_CP036282|CRISPRCasFinder 4114400-4114448 49 NZ_CP036282.1 4119881-4119929 1 0.98
NZ_CP036282_2 2.1|4114400|49|NZ_CP036282|CRISPRCasFinder 4114400-4114448 49 NZ_CP036282.1 4121099-4121147 1 0.98
NZ_CP036282_2 2.1|4114400|49|NZ_CP036282|CRISPRCasFinder 4114400-4114448 49 NZ_CP036282.1 4122317-4122365 1 0.98
NZ_CP036282_2 2.1|4114400|49|NZ_CP036282|CRISPRCasFinder 4114400-4114448 49 NZ_CP036282.1 4123535-4123583 1 0.98
NZ_CP036282_2 2.1|4114400|49|NZ_CP036282|CRISPRCasFinder 4114400-4114448 49 NZ_CP036282.1 4124753-4124801 1 0.98
NZ_CP036282_3 3.2|4117004|49|NZ_CP036282|CRISPRCasFinder 4117004-4117052 49 NZ_CP036282.1 4123094-4123142 1 0.98
NZ_CP036282_3 3.2|4117004|49|NZ_CP036282|CRISPRCasFinder 4117004-4117052 49 NZ_CP036282.1 4124312-4124360 1 0.98
NZ_CP036282_4 4.1|4117445|49|NZ_CP036282|CRISPRCasFinder 4117445-4117493 49 NZ_CP036282.1 4121099-4121147 2 0.959
NZ_CP036282_4 4.1|4117445|49|NZ_CP036282|CRISPRCasFinder 4117445-4117493 49 NZ_CP036282.1 4122317-4122365 2 0.959
NZ_CP036282_4 4.1|4117445|49|NZ_CP036282|CRISPRCasFinder 4117445-4117493 49 NZ_CP036282.1 4123535-4123583 2 0.959
NZ_CP036282_4 4.1|4117445|49|NZ_CP036282|CRISPRCasFinder 4117445-4117493 49 NZ_CP036282.1 4124753-4124801 2 0.959

1. spacer 3.1|4116956|25|NZ_CP036282|CRISPRCasFinder matches to position: 4115738-4115762, mismatch: 0, identity: 1.0

gagcgcgcggatgtccctcgtctct	CRISPR spacer
gagcgcgcggatgtccctcgtctct	Protospacer
*************************

2. spacer 3.1|4116956|25|NZ_CP036282|CRISPRCasFinder matches to position: 4118174-4118198, mismatch: 0, identity: 1.0

gagcgcgcggatgtccctcgtctct	CRISPR spacer
gagcgcgcggatgtccctcgtctct	Protospacer
*************************

3. spacer 3.1|4116956|25|NZ_CP036282|CRISPRCasFinder matches to position: 4119392-4119416, mismatch: 0, identity: 1.0

gagcgcgcggatgtccctcgtctct	CRISPR spacer
gagcgcgcggatgtccctcgtctct	Protospacer
*************************

4. spacer 3.1|4116956|25|NZ_CP036282|CRISPRCasFinder matches to position: 4120610-4120634, mismatch: 0, identity: 1.0

gagcgcgcggatgtccctcgtctct	CRISPR spacer
gagcgcgcggatgtccctcgtctct	Protospacer
*************************

5. spacer 3.1|4116956|25|NZ_CP036282|CRISPRCasFinder matches to position: 4121828-4121852, mismatch: 0, identity: 1.0

gagcgcgcggatgtccctcgtctct	CRISPR spacer
gagcgcgcggatgtccctcgtctct	Protospacer
*************************

6. spacer 3.1|4116956|25|NZ_CP036282|CRISPRCasFinder matches to position: 4123046-4123070, mismatch: 0, identity: 1.0

gagcgcgcggatgtccctcgtctct	CRISPR spacer
gagcgcgcggatgtccctcgtctct	Protospacer
*************************

7. spacer 3.1|4116956|25|NZ_CP036282|CRISPRCasFinder matches to position: 4124264-4124288, mismatch: 0, identity: 1.0

gagcgcgcggatgtccctcgtctct	CRISPR spacer
gagcgcgcggatgtccctcgtctct	Protospacer
*************************

8. spacer 3.1|4116956|25|NZ_CP036282|CRISPRCasFinder matches to position: 4125482-4125506, mismatch: 0, identity: 1.0

gagcgcgcggatgtccctcgtctct	CRISPR spacer
gagcgcgcggatgtccctcgtctct	Protospacer
*************************

9. spacer 3.2|4117004|49|NZ_CP036282|CRISPRCasFinder matches to position: 4115786-4115834, mismatch: 0, identity: 1.0

cagcgccacaatgttggcggtcgtcaaggcctgcacttggttggtttgc	CRISPR spacer
cagcgccacaatgttggcggtcgtcaaggcctgcacttggttggtttgc	Protospacer
*************************************************

10. spacer 3.2|4117004|49|NZ_CP036282|CRISPRCasFinder matches to position: 4118222-4118270, mismatch: 0, identity: 1.0

cagcgccacaatgttggcggtcgtcaaggcctgcacttggttggtttgc	CRISPR spacer
cagcgccacaatgttggcggtcgtcaaggcctgcacttggttggtttgc	Protospacer
*************************************************

11. spacer 3.2|4117004|49|NZ_CP036282|CRISPRCasFinder matches to position: 4119440-4119488, mismatch: 0, identity: 1.0

cagcgccacaatgttggcggtcgtcaaggcctgcacttggttggtttgc	CRISPR spacer
cagcgccacaatgttggcggtcgtcaaggcctgcacttggttggtttgc	Protospacer
*************************************************

12. spacer 3.2|4117004|49|NZ_CP036282|CRISPRCasFinder matches to position: 4120658-4120706, mismatch: 0, identity: 1.0

cagcgccacaatgttggcggtcgtcaaggcctgcacttggttggtttgc	CRISPR spacer
cagcgccacaatgttggcggtcgtcaaggcctgcacttggttggtttgc	Protospacer
*************************************************

13. spacer 3.2|4117004|49|NZ_CP036282|CRISPRCasFinder matches to position: 4121876-4121924, mismatch: 0, identity: 1.0

cagcgccacaatgttggcggtcgtcaaggcctgcacttggttggtttgc	CRISPR spacer
cagcgccacaatgttggcggtcgtcaaggcctgcacttggttggtttgc	Protospacer
*************************************************

14. spacer 4.1|4117445|49|NZ_CP036282|CRISPRCasFinder matches to position: 4115009-4115057, mismatch: 0, identity: 1.0

gagcgccgcaacacctgctgtcgtcaaggcctgaatttggttcgtttgc	CRISPR spacer
gagcgccgcaacacctgctgtcgtcaaggcctgaatttggttcgtttgc	Protospacer
*************************************************

15. spacer 4.1|4117445|49|NZ_CP036282|CRISPRCasFinder matches to position: 4116227-4116275, mismatch: 0, identity: 1.0

gagcgccgcaacacctgctgtcgtcaaggcctgaatttggttcgtttgc	CRISPR spacer
gagcgccgcaacacctgctgtcgtcaaggcctgaatttggttcgtttgc	Protospacer
*************************************************

16. spacer 4.1|4117445|49|NZ_CP036282|CRISPRCasFinder matches to position: 4118663-4118711, mismatch: 0, identity: 1.0

gagcgccgcaacacctgctgtcgtcaaggcctgaatttggttcgtttgc	CRISPR spacer
gagcgccgcaacacctgctgtcgtcaaggcctgaatttggttcgtttgc	Protospacer
*************************************************

17. spacer 4.1|4117445|49|NZ_CP036282|CRISPRCasFinder matches to position: 4119881-4119929, mismatch: 0, identity: 1.0

gagcgccgcaacacctgctgtcgtcaaggcctgaatttggttcgtttgc	CRISPR spacer
gagcgccgcaacacctgctgtcgtcaaggcctgaatttggttcgtttgc	Protospacer
*************************************************

18. spacer 5.1|4117877|25|NZ_CP036282|CRISPRCasFinder matches to position: 4115441-4115465, mismatch: 0, identity: 1.0

cagcgctgccaatcctgcgctgttg	CRISPR spacer
cagcgctgccaatcctgcgctgttg	Protospacer
*************************

19. spacer 5.1|4117877|25|NZ_CP036282|CRISPRCasFinder matches to position: 4116659-4116683, mismatch: 0, identity: 1.0

cagcgctgccaatcctgcgctgttg	CRISPR spacer
cagcgctgccaatcctgcgctgttg	Protospacer
*************************

20. spacer 5.1|4117877|25|NZ_CP036282|CRISPRCasFinder matches to position: 4119095-4119119, mismatch: 0, identity: 1.0

cagcgctgccaatcctgcgctgttg	CRISPR spacer
cagcgctgccaatcctgcgctgttg	Protospacer
*************************

21. spacer 5.1|4117877|25|NZ_CP036282|CRISPRCasFinder matches to position: 4120313-4120337, mismatch: 0, identity: 1.0

cagcgctgccaatcctgcgctgttg	CRISPR spacer
cagcgctgccaatcctgcgctgttg	Protospacer
*************************

22. spacer 5.1|4117877|25|NZ_CP036282|CRISPRCasFinder matches to position: 4121531-4121555, mismatch: 0, identity: 1.0

cagcgctgccaatcctgcgctgttg	CRISPR spacer
cagcgctgccaatcctgcgctgttg	Protospacer
*************************

23. spacer 5.1|4117877|25|NZ_CP036282|CRISPRCasFinder matches to position: 4122749-4122773, mismatch: 0, identity: 1.0

cagcgctgccaatcctgcgctgttg	CRISPR spacer
cagcgctgccaatcctgcgctgttg	Protospacer
*************************

24. spacer 5.1|4117877|25|NZ_CP036282|CRISPRCasFinder matches to position: 4123967-4123991, mismatch: 0, identity: 1.0

cagcgctgccaatcctgcgctgttg	CRISPR spacer
cagcgctgccaatcctgcgctgttg	Protospacer
*************************

25. spacer 5.1|4117877|25|NZ_CP036282|CRISPRCasFinder matches to position: 4125185-4125209, mismatch: 0, identity: 1.0

cagcgctgccaatcctgcgctgttg	CRISPR spacer
cagcgctgccaatcctgcgctgttg	Protospacer
*************************

26. spacer 2.1|4114400|49|NZ_CP036282|CRISPRCasFinder matches to position: 4115009-4115057, mismatch: 1, identity: 0.98

gagcgccgcaacacctgctgtcgtcaaggcctggatttggttcgtttgc	CRISPR spacer
gagcgccgcaacacctgctgtcgtcaaggcctgaatttggttcgtttgc	Protospacer
*********************************.***************

27. spacer 2.1|4114400|49|NZ_CP036282|CRISPRCasFinder matches to position: 4116227-4116275, mismatch: 1, identity: 0.98

gagcgccgcaacacctgctgtcgtcaaggcctggatttggttcgtttgc	CRISPR spacer
gagcgccgcaacacctgctgtcgtcaaggcctgaatttggttcgtttgc	Protospacer
*********************************.***************

28. spacer 2.1|4114400|49|NZ_CP036282|CRISPRCasFinder matches to position: 4118663-4118711, mismatch: 1, identity: 0.98

gagcgccgcaacacctgctgtcgtcaaggcctggatttggttcgtttgc	CRISPR spacer
gagcgccgcaacacctgctgtcgtcaaggcctgaatttggttcgtttgc	Protospacer
*********************************.***************

29. spacer 2.1|4114400|49|NZ_CP036282|CRISPRCasFinder matches to position: 4119881-4119929, mismatch: 1, identity: 0.98

gagcgccgcaacacctgctgtcgtcaaggcctggatttggttcgtttgc	CRISPR spacer
gagcgccgcaacacctgctgtcgtcaaggcctgaatttggttcgtttgc	Protospacer
*********************************.***************

30. spacer 2.1|4114400|49|NZ_CP036282|CRISPRCasFinder matches to position: 4121099-4121147, mismatch: 1, identity: 0.98

gagcgccgcaacacctgctgtcgtcaaggcctggatttggttcgtttgc	CRISPR spacer
gagcgccgcaacacctgctgtcgtcaaggcttggatttggttcgtttgc	Protospacer
******************************.******************

31. spacer 2.1|4114400|49|NZ_CP036282|CRISPRCasFinder matches to position: 4122317-4122365, mismatch: 1, identity: 0.98

gagcgccgcaacacctgctgtcgtcaaggcctggatttggttcgtttgc	CRISPR spacer
gagcgccgcaacacctgctgtcgtcaaggcttggatttggttcgtttgc	Protospacer
******************************.******************

32. spacer 2.1|4114400|49|NZ_CP036282|CRISPRCasFinder matches to position: 4123535-4123583, mismatch: 1, identity: 0.98

gagcgccgcaacacctgctgtcgtcaaggcctggatttggttcgtttgc	CRISPR spacer
gagcgccgcaacacctgctgtcgtcaaggcttggatttggttcgtttgc	Protospacer
******************************.******************

33. spacer 2.1|4114400|49|NZ_CP036282|CRISPRCasFinder matches to position: 4124753-4124801, mismatch: 1, identity: 0.98

gagcgccgcaacacctgctgtcgtcaaggcctggatttggttcgtttgc	CRISPR spacer
gagcgccgcaacacctgctgtcgtcaaggcttggatttggttcgtttgc	Protospacer
******************************.******************

34. spacer 3.2|4117004|49|NZ_CP036282|CRISPRCasFinder matches to position: 4123094-4123142, mismatch: 1, identity: 0.98

cagcgccacaatgttggcggtcgtcaaggcctgcacttggttggtttgc	CRISPR spacer
cagcgccacaatgttggcggtggtcaaggcctgcacttggttggtttgc	Protospacer
********************* ***************************

35. spacer 3.2|4117004|49|NZ_CP036282|CRISPRCasFinder matches to position: 4124312-4124360, mismatch: 1, identity: 0.98

cagcgccacaatgttggcggtcgtcaaggcctgcacttggttggtttgc	CRISPR spacer
cagcgccacaatgttggcggtggtcaaggcctgcacttggttggtttgc	Protospacer
********************* ***************************

36. spacer 4.1|4117445|49|NZ_CP036282|CRISPRCasFinder matches to position: 4121099-4121147, mismatch: 2, identity: 0.959

gagcgccgcaacacctgctgtcgtcaaggcctgaatttggttcgtttgc	CRISPR spacer
gagcgccgcaacacctgctgtcgtcaaggcttggatttggttcgtttgc	Protospacer
******************************.**.***************

37. spacer 4.1|4117445|49|NZ_CP036282|CRISPRCasFinder matches to position: 4122317-4122365, mismatch: 2, identity: 0.959

gagcgccgcaacacctgctgtcgtcaaggcctgaatttggttcgtttgc	CRISPR spacer
gagcgccgcaacacctgctgtcgtcaaggcttggatttggttcgtttgc	Protospacer
******************************.**.***************

38. spacer 4.1|4117445|49|NZ_CP036282|CRISPRCasFinder matches to position: 4123535-4123583, mismatch: 2, identity: 0.959

gagcgccgcaacacctgctgtcgtcaaggcctgaatttggttcgtttgc	CRISPR spacer
gagcgccgcaacacctgctgtcgtcaaggcttggatttggttcgtttgc	Protospacer
******************************.**.***************

39. spacer 4.1|4117445|49|NZ_CP036282|CRISPRCasFinder matches to position: 4124753-4124801, mismatch: 2, identity: 0.959

gagcgccgcaacacctgctgtcgtcaaggcctgaatttggttcgtttgc	CRISPR spacer
gagcgccgcaacacctgctgtcgtcaaggcttggatttggttcgtttgc	Protospacer
******************************.**.***************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP036282_5 5.1|4117877|25|NZ_CP036282|CRISPRCasFinder 4117877-4117901 25 NZ_CP034329 Tabrizicola piscis strain K13M18 plasmid unnamed1, complete sequence 107916-107940 3 0.88

1. spacer 5.1|4117877|25|NZ_CP036282|CRISPRCasFinder matches to NZ_CP034329 (Tabrizicola piscis strain K13M18 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.88

cagcgctgccaatcctgcgctgttg	CRISPR spacer
cagcgctgccaatcctgcgtcgtcg	Protospacer
*******************..**.*

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 508627 : 555387 58 Burkholderia_phage(63.33%) tail,terminase,tRNA,capsid,integrase,transposase,plate attL 526998:527014|attR 549485:549501
DBSCAN-SWA_2 2277366 : 2282039 7 Escherichia_phage(66.67%) NA NA
DBSCAN-SWA_3 2406057 : 2479311 58 Ralstonia_phage(25.0%) plate,tRNA,protease NA
DBSCAN-SWA_4 3188620 : 3215908 41 Burkholderia_phage(22.73%) capsid,transposase NA
DBSCAN-SWA_5 3858692 : 3952216 105 Burkholderia_phage(44.19%) tail,terminase,tRNA,capsid,integrase,transposase,plate,holin attL 3901912:3901927|attR 3923984:3923999
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage