CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP041367	Acinetobacter tandoii strain SE63 plasmid p2, complete sequence	0 crisprs	NA	0
NZ_CP041365	Acinetobacter tandoii strain SE63 chromosome, complete genome	0 crisprs	DEDDh,WYL,csa3,cas3	3
NZ_CP041366	Acinetobacter tandoii strain SE63 plasmid p1, complete sequence	0 crisprs	NA	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

892669 : 901303

Acinetobacter_phage(83.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_142768146.1\|892669_895933_+	DEAD/DEAH box helicase family protein	A0A1P8BMQ8	Lactococcus_phage	4.2e-05	25.7
WP_171334055.1\|896667_897216_-	GTP cyclohydrolase I FolE	A0A0P0HSD2	Acinetobacter_phage	4.9e-92	95.6
WP_142768147.1\|897309_897996_-	Smr/MutS family protein	A0A0P0IDT4	Acinetobacter_phage	8.6e-86	74.3
WP_142768148.1\|898554_898797_+	DUF2798 domain-containing protein	NA	NA	NA	NA
WP_142768149.1\|898858_899665_-	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	1.8e-130	89.2
WP_142768150.1\|899680_900727_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	9.2e-164	84.8
WP_171334054.1\|900727_901303_-	gamma-glutamyl-gamma-aminobutyrate hydrolase family protein	A0A0P0IKJ1	Acinetobacter_phage	6.3e-106	96.3

DBSCAN-SWA_2

1089065 : 1154914

Pseudomonas_phage(22.5%)

plate,portal,protease,capsid,tail,tRNA,terminase,integrase

attL 1088040:1088085|attR 1129646:1129691

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1088040:1088085	attL	NA	NA	NA	NA
WP_142768289.1\|1089065_1090208_-\|integrase	phage integrase Arm DNA-binding domain-containing protein	A0A0P0IKZ2	Acinetobacter_phage	7.7e-148	66.6
WP_044740305.1\|1090209_1090476_-	hypothetical protein	A0A0P0IE28	Acinetobacter_phage	3.5e-27	63.6
WP_142768290.1\|1090465_1090771_-	hypothetical protein	A0A0P0IDU2	Acinetobacter_phage	2.8e-20	54.3
WP_142768292.1\|1091206_1092076_+	sce7726 family protein	NA	NA	NA	NA
WP_171479115.1\|1092041_1092938_+	sce7725 family protein	NA	NA	NA	NA
WP_142768294.1\|1092991_1093771_-	peptidase S24	A0A0P0IYD9	Acinetobacter_phage	8.1e-24	45.6
WP_142768295.1\|1093772_1094018_+	helix-turn-helix domain-containing protein	A0A0R6PJ81	Moraxella_phage	7.2e-19	64.3
WP_142768296.1\|1094042_1094492_+	phage regulatory CII family protein	A0A2H4J3D5	uncultured_Caudovirales_phage	1.7e-58	76.4
WP_142768297.1\|1094504_1095458_+	helix-turn-helix domain-containing protein	A0A0P0HSN8	Acinetobacter_phage	1.3e-20	55.2
WP_171479116.1\|1095454_1095622_+	hypothetical protein	NA	NA	NA	NA
WP_142768298.1\|1095618_1096050_+	hypothetical protein	G3EN88	Psychrobacter_phage	2.1e-21	41.3
WP_142768299.1\|1096059_1096446_+	hypothetical protein	V5YTF6	Pseudomonas_phage	6.0e-12	37.6
WP_142768300.1\|1096559_1096796_+	hypothetical protein	NA	NA	NA	NA
WP_142768301.1\|1098073_1098445_+	hypothetical protein	NA	NA	NA	NA
WP_142768302.1\|1098441_1098891_+	glycoside hydrolase family protein	A0A1I9L2K1	Xanthomonas_phage	5.5e-41	60.6
WP_142768303.1\|1099038_1099542_+\|terminase	terminase small subunit	V5YUM0	Pseudomonas_phage	8.6e-35	50.9
WP_142770013.1\|1099528_1101508_+\|terminase	phage terminase large subunit family protein	V5YTA4	Pseudomonas_phage	1.6e-254	68.2
WP_142768304.1\|1101877_1103059_+	hypothetical protein	NA	NA	NA	NA
WP_142768305.1\|1103094_1103358_-	Arc family DNA-binding protein	NA	NA	NA	NA
WP_142768306.1\|1103528_1104401_+	ORF6N domain-containing protein	G9L689	Escherichia_phage	7.7e-31	58.1
WP_171479117.1\|1104835_1104973_+	hypothetical protein	NA	NA	NA	NA
WP_142768307.1\|1104988_1105528_+	hypothetical protein	A0A1W6JT65	Escherichia_phage	2.8e-39	52.8
WP_142768308.1\|1105534_1107109_+\|portal	phage portal protein	A0A088FVG5	Escherichia_phage	6.0e-167	58.8
WP_142768309.1\|1107108_1109100_+\|capsid	phage major capsid protein	V5YSS9	Pseudomonas_phage	4.0e-176	50.8
WP_142768310.1\|1109151_1109442_+	hypothetical protein	NA	NA	NA	NA
WP_142768311.1\|1109447_1109771_+	hypothetical protein	V5YTH3	Pseudomonas_phage	1.6e-26	52.8
WP_142768312.1\|1109763_1110282_+	hypothetical protein	A0A088FVG9	Escherichia_phage	8.4e-17	37.4
WP_142768313.1\|1110266_1110845_+	hypothetical protein	A0A1W6JT55	Escherichia_phage	2.5e-25	36.8
WP_142768314.1\|1110841_1111354_+\|plate	phage baseplate assembly protein V	Q9JML8	Wolbachia_phage	9.1e-16	37.5
WP_142770014.1\|1111353_1111686_+	GPW/gp25 family protein	A0A088FV58	Escherichia_phage	1.8e-28	59.6
WP_142768315.1\|1111682_1112660_+\|plate	baseplate J/gp47 family protein	A0A0M4REB7	Salmonella_phage	7.0e-65	43.3
WP_142768316.1\|1112656_1113187_+\|tail	phage tail protein I	A0A2H4JDH5	uncultured_Caudovirales_phage	1.2e-23	37.7
WP_142768317.1\|1115360_1115777_+	hypothetical protein	NA	NA	NA	NA
WP_142768318.1\|1115856_1117035_+\|tail	phage tail sheath subtilisin-like domain-containing protein	V5YTI0	Pseudomonas_phage	2.2e-142	57.0
WP_142768319.1\|1117047_1117557_+\|tail	phage major tail tube protein	A0A193GYM4	Enterobacter_phage	1.1e-53	62.0
WP_142768320.1\|1117558_1117846_+\|tail	phage tail assembly protein	A0A193GYZ8	Enterobacter_phage	4.3e-15	50.5
WP_142770015.1\|1118179_1118674_+	Ltp family lipoprotein	G3ENA3	Psychrobacter_phage	1.2e-09	58.2
WP_142768321.1\|1118820_1121244_+\|tail	phage tail tape measure protein	V5YUN9	Pseudomonas_phage	2.9e-136	40.8
WP_142768322.1\|1121243_1121702_+\|tail	phage tail protein	V5YTC2	Pseudomonas_phage	1.2e-30	46.8
WP_142768323.1\|1121704_1121920_+\|tail	tail protein X	A0A219Y9W1	Aeromonas_phage	9.4e-07	40.3
WP_142768324.1\|1121910_1122894_+\|tail	phage tail protein	V5YTN9	Pseudomonas_phage	4.4e-83	48.2
WP_044738568.1\|1122947_1123229_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A2L1IV28	Escherichia_phage	2.6e-20	49.5
WP_142768325.1\|1123253_1123538_+	HigA family addiction module antidote protein	NA	NA	NA	NA
WP_142768326.1\|1123558_1123783_-	hypothetical protein	NA	NA	NA	NA
WP_142768327.1\|1123797_1124418_-	SOS response-associated peptidase family protein	A0A218MNF5	uncultured_virus	3.9e-53	49.8
WP_142768328.1\|1124553_1125567_-	hypothetical protein	NA	NA	NA	NA
WP_142768329.1\|1125629_1125848_-	excalibur calcium-binding domain-containing protein	NA	NA	NA	NA
WP_142770016.1\|1126111_1126864_+	hypothetical protein	NA	NA	NA	NA
WP_142768330.1\|1126890_1127439_-	hypothetical protein	NA	NA	NA	NA
WP_142768331.1\|1127440_1127893_-	Arc family DNA-binding protein	NA	NA	NA	NA
WP_171479118.1\|1128092_1128848_+	hypothetical protein	B6SCX2	Bacteriophage	3.4e-19	50.0
WP_142768333.1\|1128886_1129357_-	hypothetical protein	NA	NA	NA	NA
WP_142768334.1\|1130173_1130413_+	hypothetical protein	NA	NA	NA	NA
1129646:1129691	attR	NA	NA	NA	NA
WP_142768335.1\|1130862_1131084_+	hypothetical protein	NA	NA	NA	NA
WP_142768336.1\|1131815_1132073_+	hypothetical protein	NA	NA	NA	NA
WP_142768337.1\|1132800_1133091_-	hypothetical protein	NA	NA	NA	NA
WP_171479119.1\|1133428_1133620_+	hypothetical protein	NA	NA	NA	NA
WP_142768339.1\|1134015_1134471_+	DUF2147 domain-containing protein	NA	NA	NA	NA
WP_142768340.1\|1134718_1135123_-	hypothetical protein	NA	NA	NA	NA
WP_171479120.1\|1135695_1136361_+	hypothetical protein	A0A2H4J8A2	uncultured_Caudovirales_phage	6.9e-48	46.2
WP_100242682.1\|1137196_1138519_+	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	8.3e-61	35.8
WP_142768342.1\|1138582_1139581_+	adenosine deaminase	NA	NA	NA	NA
WP_142768343.1\|1139670_1140225_-	cytochrome b/b6 domain-containing protein	NA	NA	NA	NA
WP_142768344.1\|1140452_1140830_+	hypothetical protein	NA	NA	NA	NA
WP_142770017.1\|1140963_1141326_+	hypothetical protein	NA	NA	NA	NA
WP_142768345.1\|1141392_1141965_+	ribonuclease HII	G4YAY0	Emiliania_huxleyi_virus	3.7e-26	44.1
WP_016166582.1\|1142020_1142275_-	carbon storage regulator CsrA	A0A2I7RT00	Vibrio_phage	4.0e-12	66.7
WP_016166581.1\|1142521_1143802_-	aspartate kinase	NA	NA	NA	NA
WP_171479121.1\|1143867_1146561_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	5.6e-72	37.0
WP_142768346.1\|1146961_1147984_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_142768347.1\|1148028_1148550_-	hypothetical protein	NA	NA	NA	NA
WP_100241638.1\|1148807_1149122_+	hypothetical protein	NA	NA	NA	NA
WP_100241520.1\|1149138_1149438_-	AzlD family protein	NA	NA	NA	NA
WP_142768348.1\|1149434_1150187_-	AzlC family ABC transporter permease	NA	NA	NA	NA
WP_100241518.1\|1150329_1150782_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_142768349.1\|1150993_1152160_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA
WP_142768350.1\|1152229_1153549_+	adenylosuccinate synthase	A0A2R8FF47	Brazilian_cedratvirus	4.1e-68	36.5
WP_100241515.1\|1153716_1154025_+	DUF1705 domain-containing protein	NA	NA	NA	NA
WP_142768351.1\|1154137_1154914_+\|protease	M48 family metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_3

1265098 : 1277684

Moumouvirus(12.5%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_142768424.1\|1265098_1266520_-\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.3e-47	29.0
WP_142770022.1\|1266775_1267753_+	KpsF/GutQ family sugar-phosphate isomerase	A0A2P0VNK5	Tetraselmis_virus	2.3e-36	32.1
WP_100242974.1\|1267756_1268296_+	HAD-IIIA family hydrolase	NA	NA	NA	NA
WP_100242973.1\|1268340_1268895_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA
WP_142768425.1\|1268878_1269445_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA
WP_100242971.1\|1269444_1270191_+	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	6.2e-21	28.5
WP_142768426.1\|1270316_1270913_+	YigZ family protein	A0A1X9I5T8	Streptococcus_phage	6.4e-21	34.6
WP_171334125.1\|1270926_1271523_+	acyltransferase	M1HKK6	Paramecium_bursaria_Chlorella_virus	1.8e-10	52.4
WP_142768427.1\|1271645_1272488_+	universal stress protein	A0A2H4J154	uncultured_Caudovirales_phage	7.7e-36	36.0
WP_142768428.1\|1272616_1273282_-	class I SAM-dependent methyltransferase	S5YRC3	Mycobacterium_phage	1.9e-29	38.0
WP_171334124.1\|1273409_1274075_-	peptidase M15	NA	NA	NA	NA
WP_004938070.1\|1274260_1274584_-	ferredoxin family protein	NA	NA	NA	NA
WP_142768429.1\|1275047_1277684_-	DNA mismatch repair protein MutS	A0A1V0SDQ0	Indivirus	5.2e-38	24.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage