CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_AP019736	Alistipes dispar strain 5CPEGH6	1 crisprs	RT,DEDDh,cas3,WYL	0	1	1	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_AP019736_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP019736_1

2239924-2240007

Orphan

Consensus_repeat	Method
GAGCGACGAATGGAAGGAGGCGCAGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP019736_1

>merge|NZ_AP019736|1|2239924-2240007|CRISPRCasFinder
GAGCGACGAATGGAAGGAGGCGCAGCGCGGGATTTCCGAGGCGGGGGCCTATTTCGAGAGCGACGAGTGGAAGGAGGCGCAGCG

>NZ_AP019736|1|1|2239924-2240007|CRISPRCasFinder
GAGCGACGAATGGAAGGAGGCGCAGCG	CGGGATTTCCGAGGCGGGGGCCTATTTCGA
GAGCGACGAGTGGAAGGAGGCGCAGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP019736.1\|WP_141429285.1\|2249850_2252478_-\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235582
NZ_AP019736.1\|WP_141429268.1\|2236319_2237129_-\|N-acetylmuramic-acid-6-phosphate-etherase	unknown	unknown	gnl\|CDD\|235467
NZ_AP019736.1\|WP_141429258.1\|2227021_2229160_-\|methylmalonyl-CoA-mutase	unknown	unknown	gnl\|CDD\|236508
NZ_AP019736.1\|WP_141429266.1\|2235248_2236304_-\|helix-hairpin-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378965
NZ_AP019736.1\|WP_141429289.1\|2255049_2255562_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379326
NZ_AP019736.1\|WP_141429275.1\|2240822_2242697_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274514
NZ_AP019736.1\|WP_141429260.1\|2229162_2231010_-\|methylmalonyl-CoA-mutase-small-subunit	unknown	unknown	gnl\|CDD\|376584
NZ_AP019736.1\|WP_141429290.1\|2255558_2255942_+\|MmcQ/YjbR-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|225197
NZ_AP019736.1\|WP_141429270.1\|2237118_2237940_-\|ATPase	unknown	unknown	gnl\|CDD\|225518
NZ_AP019736.1\|WP_141429272.1\|2238170_2238536_+\|BlaI/MecI/CopY-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|367747
NZ_AP019736.1\|WP_141430007.1\|2231473_2233630_+\|glutamine-synthetase-III	unknown	unknown	gnl\|CDD\|226477
NZ_AP019736.1\|WP_141429279.1\|2243443_2246929_-\|isoleucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235681
NZ_AP019736.1\|WP_141429293.1\|2255938_2256691_+\|3-deoxy-manno-octulosonate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|235473
NZ_AP019736.1\|WP_141429262.1\|2233856_2234870_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381315
NZ_AP019736.1\|WP_141429287.1\|2252594_2255024_+\|endopeptidase-La	unknown	unknown	gnl\|CDD\|223542
NZ_AP019736.1\|WP_141429283.1\|2249232_2249697_-\|ribonuclease-HI	unknown	unknown	gnl\|CDD\|260010
NZ_AP019736.1\|WP_141429281.1\|2247183_2249013_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224055
NZ_AP019736.1\|WP_141429264.1\|2234955_2235147_-\|30S-ribosomal-protein-S21	unknown	unknown	gnl\|CDD\|376472
NZ_AP019736.1\|WP_141429277.1\|2242981_2243362_-\|TraR/DksA-C4-type-zinc-finger-protein	unknown	unknown	gnl\|CDD\|224648
NZ_AP019736.1\|WP_162502074.1\|2231245_2231416_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_AP019736.1\|WP_141429268.1\|2236319_2237129_-\|N-acetylmuramic-acid-6-phosphate-etherase	gnl\|CDD\|235467	PRK05441, murQ, N-acetylmuramic acid-6-phosphate etherase; Reviewed.	2.64011e-143
NZ_AP019736.1\|WP_141429258.1\|2227021_2229160_-\|methylmalonyl-CoA-mutase	gnl\|CDD\|236508	PRK09426, PRK09426, methylmalonyl-CoA mutase; Reviewed.	0
NZ_AP019736.1\|WP_141429266.1\|2235248_2236304_-\|helix-hairpin-helix-domain-containing-protein	gnl\|CDD\|378965	pfam12836, HHH_3, Helix-hairpin-helix motif. The HhH domain is a short DNA-binding domain.	8.0151e-15
NZ_AP019736.1\|WP_141429289.1\|2255049_2255562_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379326	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	9.64468e-16
NZ_AP019736.1\|WP_141429275.1\|2240822_2242697_-\|hypothetical-protein	gnl\|CDD\|274514	TIGR03303, OM_YaeT, outer membrane protein assembly complex, YaeT protein. Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat. [Protein fate, Protein and peptide secretion and trafficking].	2.39917e-10
NZ_AP019736.1\|WP_141429260.1\|2229162_2231010_-\|methylmalonyl-CoA-mutase-small-subunit	gnl\|CDD\|376584	pfam01642, MM_CoA_mutase, Methylmalonyl-CoA mutase. The enzyme methylmalonyl-CoA mutase is a member of a class of enzymes that uses coenzyme B12 (adenosylcobalamin) as a cofactor. The enzyme induces the formation of an adenosyl radical from the cofactor. This radical then initiates a free-radical rearrangement of its substrate, succinyl-CoA, to methylmalonyl-CoA.	0
NZ_AP019736.1\|WP_141429290.1\|2255558_2255942_+\|MmcQ/YjbR-family-DNA-binding-protein	gnl\|CDD\|225197	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown].	2.70362e-33
NZ_AP019736.1\|WP_141429270.1\|2237118_2237940_-\|ATPase	gnl\|CDD\|225518	COG2971, COG2971, Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism].	1.85873e-13
NZ_AP019736.1\|WP_141429272.1\|2238170_2238536_+\|BlaI/MecI/CopY-family-transcriptional-regulator	gnl\|CDD\|367747	pfam03965, Penicillinase_R, Penicillinase repressor. The penicillinase repressor negatively regulates expression of the penicillinase gene. The N-terminal region of this protein is involved in operator recognition, while the C-terminal is responsible for dimerization of the protein.	3.10457e-30
NZ_AP019736.1\|WP_141430007.1\|2231473_2233630_+\|glutamine-synthetase-III	gnl\|CDD\|226477	COG3968, COG3968, Uncharacterized protein related to glutamine synthetase [General function prediction only].	0
NZ_AP019736.1\|WP_141429279.1\|2243443_2246929_-\|isoleucine--tRNA-ligase	gnl\|CDD\|235681	PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed.	0
NZ_AP019736.1\|WP_141429293.1\|2255938_2256691_+\|3-deoxy-manno-octulosonate-cytidylyltransferase	gnl\|CDD\|235473	PRK05450, PRK05450, 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional.	2.04148e-125
NZ_AP019736.1\|WP_141429262.1\|2233856_2234870_+\|aldo/keto-reductase	gnl\|CDD\|381315	cd19089, AKR_AKR14A1_2, AKR14A family of aldo-keto reductase (AKR). Escherichia coli L-glyceraldehyde 3-phosphate reductase (GPR/YghZ), also called GAP reductase, is a founding member of aldo-keto reductase family 14 member A1 (AKR14A1). It catalyzes the stereospecific, NADPH-dependent reduction of L-glyceraldehyde 3-phosphate (L-GAP). It is also involved in the stress response as a methylglyoxal reductase which converts the toxic metabolite methylglyoxal to acetol in vitro and in vivo. Salmonella enterica AKR is a founding member of aldo-keto reductase family 14 member A2 (AKR14A2). It catalyzes the conversion of 3-hydroxybutanal (3-HB) to 1,3-butanediol (1,3-BDO) by using NADPH as a cofactor.	6.11e-172
NZ_AP019736.1\|WP_141429287.1\|2252594_2255024_+\|endopeptidase-La	gnl\|CDD\|223542	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones].	0
NZ_AP019736.1\|WP_141429283.1\|2249232_2249697_-\|ribonuclease-HI	gnl\|CDD\|260010	cd09278, RNase_HI_prokaryote_like, RNase HI family found mainly in prokaryotes. Ribonuclease H (RNase H) is classified into two evolutionarily unrelated families, type 1 (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type 2 (prokaryotic RNase HII and HIII, and eukaryotic RNase H2). RNase H is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a sequence non-specific manner. RNase H is involved in DNA replication, repair and transcription. RNase H is widely present in various organisms, including bacteria, archaea and eukaryotes and most prokaryotic and eukaryotic genomes contain multiple RNase H genes. Despite the lack of amino acid sequence homology, type 1 and type 2 RNase H share a main-chain fold and steric configurations of the four acidic active-site (DEDD), residues and have the same catalytic mechanism and functions in cells. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. Prokaryotic RNase H varies greatly in domain structures and substrate specificities. Prokaryotes and some single-cell eukaryotes do not require RNase H for viability.	2.72475e-67
NZ_AP019736.1\|WP_141429281.1\|2247183_2249013_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	4.73779e-175
NZ_AP019736.1\|WP_141429264.1\|2234955_2235147_-\|30S-ribosomal-protein-S21	gnl\|CDD\|376472	pfam01165, Ribosomal_S21, Ribosomal protein S21.	7.31568e-12
NZ_AP019736.1\|WP_141429277.1\|2242981_2243362_-\|TraR/DksA-C4-type-zinc-finger-protein	gnl\|CDD\|224648	COG1734, DksA, DnaK suppressor protein [Signal transduction mechanisms].	8.42117e-10
NZ_AP019736.1\|WP_141429285.1\|2249850_2252478_-\|valine--tRNA-ligase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0

>NZ_AP019736.1|WP_141429272.1|2238170_2238536_+|BlaI/MecI/CopY-family-transcriptional-regulator
MEKLTRREEELMRCFWERGPLFVRELVAMAPEPKPHFNTLSTMVRALEAKGYVGHTAYGSTYQYYPLVSEAEFSRSTLGNVISRYFENSYLGAVSALVEEEKISVDELRELIERIETQNRG
>NZ_AP019736.1|WP_141429270.1|2237118_2237940_-|ATPase
MIIIADSGSTKCTWLFHDGGKTTSVRTRGINALQHTPEQIRETLAALPPCGPVSAVHIYSAGCSPAFPVSNEKLRRELEARFGAARIEVRSDLLGAARALFGRDEGIACILGTGANSCHCRDGEVVHNVSALGYVLGDEGSGAVLGRNLVNGIFKEHIPLRGEFLEACGMTYEEIIRRVYNEPFANRFLASFAPFILDHIGCPEVRRMVLRSFGDFAERNLSRYPKGLPVSFVGGIAAHFGELLREALAGAGYEVKEIIESPAEGLLKYHHGK
>NZ_AP019736.1|WP_141429268.1|2236319_2237129_-|N-acetylmuramic-acid-6-phosphate-etherase
MENRVTEQTSAYDNLQDMSVRDILTGINREDSLVPGAVAKVIPTMEQLVERIVERMKNGGRMFYIGAGTSGRLGVTDASELPPTYGVPFDLVIGLIAGGDGALRKAVERAEDDPEGAWRDLEPFRPTAQDVLIGIAASGTTPYVVGGLREARRHGLLTGAITCNPASPVAAEAEYALEAVVGPEFVTGSTRMKAGTAQKLMLNMISTSVMIKLGRVEGNRMVNMQITNAKLVGRGTRMIAEAAGIGEEQARELLLRWGSVKEALGHIGK
>NZ_AP019736.1|WP_141429266.1|2235248_2236304_-|helix-hairpin-helix-domain-containing-protein
MARLFSEREIRAVAVFLPLAGLLVAALVLVRPKADPEAARRAEAAMEERRDSVELHPFDPNTADFEELLGLGLSKYEAVSLLKFRAAGKVFRIPEDVALCYGIGDSLYRRLAPWIRIGRRYAIAPRTYRPGRILPEPLAPSPFRIDTVSARYLRAIGALSKRQAEAFVRWRDLSGIRDMEELRACYVVSDSVAAALEPYVIFPERQPRPIDRPVELNTADSAALRSVTGIGEKTVMRIIRYRERLGGFRSAEQLAEIPGVTESNYEKILKQISCDSCRIRKIDINFADPKTLGRHPYIAPRTLRKLLKVRQLKGGWSTAEELIEDDILTREEAARLAPYLEFGSPGGTTDE
>NZ_AP019736.1|WP_141429264.1|2234955_2235147_-|30S-ribosomal-protein-S21
MIIMPVKEGENIERALKKFKRKYERTGVLKELRRRQYFTKPSVAKREAMQHAIYVEHMYRDED
>NZ_AP019736.1|WP_141429262.1|2233856_2234870_+|aldo/keto-reductase
MTESPYLPDPGRYDGRMPYRRAGRSGVLLPALSLGLWQNFGAERPFTHSRRMLHYAFDRGITHFDLANNYGPPYGSAEETFGRVMERSFRPYRDELFVSTKAGYDMWPGPYGNWGSRKYLTASLDQSLRRMKLDYVDLFYTHRFDPQTPLEETLRALVDAVRAGKALYVGISRYPLDAARFAFRYLAERDVPCLLFQDRYNLLDREPEREGLLSAAAGAGSGFIAFSPLAQGLLTDRYLGGVPADSRMARAGSLGREVLTEELLGRLRGLNELAARRGQSLAAMSLAWLLHDERVSSVIVGASSVEQLADNLRALESPGFSDEELRRIDDLSAGAGR
>NZ_AP019736.1|WP_141430007.1|2231473_2233630_+|glutamine-synthetase-III
MVDAAINHTAVEVKAPEGRPSDYFGEKVFGREAMRKYLDKKTYAALLDTMEHRTPLTREIADSIAAGMRQWALEHGADHYTHWFQPLTGGTAEKHDAFAEPDGCGGVLEEFSGKLLVQQESDASSFPNGGIRNTFEARGYSAWDPASPAFIVDTTLCIPTVFISYTGEALDYKVPLLRSLTAVDKAATEVCRYFDRNVQKVFAYLGWEQEYFLVDESLWAVRPDLMLTGRTLMGHESAKNQQLEDHYFGAIPTRVMAFMKDLEYECLKLGIPVKTRHNEVAPNQFELAPVYEEANLANDHNQLLMTIMDKIARRHQFRVLLHEKPFKGINGSGKHNNWSLGTDTGVNLFGTGKTASENLQFITFLVNAVSAVYKYNGLLKASIMSATNAHRLGANEAPPAIISAFLGSQVSAVLEKLAASKDDDAIRFDAKSIFRMSGISHIPTLLLDNTDRNRTSPFAFTGNRFEFRAVGSSDNCAEAMIVLNTAMAHELTEFRRAVDAKIEAGAKKEKAIYEVLKQMIHACRDICFDGNGYSEEWKAEAAQRGLDCETSTPRIFDRYLDRDAVRMFGDMGVLSEVELQARTEVKWETYTKKIQIEGRVLGDLAMNHIVPIASKYEALLLDKVYKMSQIPGLNASADIALIKKIQDHTAAIQKLTGEMIDARKVANRIEDQREKAVAYHDTVASCFDAIRYHIDKLEEIVDDQIWPLPKYRELLFLR
>NZ_AP019736.1|WP_162502074.1|2231245_2231416_+|hypothetical-protein
MPDERKTGAVFRKTGEKTGDVPEKWGRFFENGRKNEVFSGKMRFSENNGPGKELHL
>NZ_AP019736.1|WP_141429260.1|2229162_2231010_-|methylmalonyl-CoA-mutase-small-subunit
MANTKREKLFTEFPPVPTEKWEEVIAVDLKGADYERKLVWRTGEGFNVRPYYRAENLEGIKFLGSQAGEFPYVRGTRAHNRWHVHQTVTVECPKTANAEALKLLNAGVDSLGFEIVKEGFSAADLDQLLDGICVSAVSLAFSGKGMGDVAELVIAKLEKEGTAAEADVAFAIDPLVKGLSTKGDFCSPNGEKCFARIAALVRKTAAYKHIRVVTVSADIFSNAGSTIVEELAFALSAGNDYIARLTDAGLTVDEAARKLRFSFSVTSNYFMEIAKFRAARMLWANIVKAYNPEKHCAGKMMIHAATSKWNQTVYDPYVNMLRGTTEAMSAVIGGVRSLEVTPFDASFETPTEFSKRIARNVELLLKHESHFDQVVDPAGGSYYVENLTQSIASEAWKLFLEIEEKGGYAEAYKAGFIKERVEASAAAKDKNIATRRQTLLGANQFPNFTEVAPKEITAESVTRRQAEGNTLSPYRGAMAFEEMRLHVDRSGKQPKAFMLTCGNLAMARARAQFSCNFFACAGIRVQDNTFFKSIEEGVKAALESKAEIVVVCASDDDYAEAAPKVKELLGGKAILVVAGAPACAPELEAQGIKNFINVKSNVLETLKFYLKEMGI
>NZ_AP019736.1|WP_141429258.1|2227021_2229160_-|methylmalonyl-CoA-mutase
MRAKFSELKYEGATQQSCCAKKGCGEVEPWLTAERIPVKGAYTAEDLEGMEHLNYAAGIAPFLRGPYSTMYVMRPWTIRQYAGFSTAEESNAFYRRNLAAGQKGLSVAFDLATHRGYDADHPRVVGDVGKAGVSICSVEDMKVLFNGIPLDRMSVSMTMNGAVLPVLAFYIVTGLEQGCSLEQLSGTIQNDILKEFMVRNTYIYPPEFSMRIIADIFEYTSKNMPKFNSISISGYHMQEAGATADIELAYTLADGLEYLRAGINAGMSIDAFAPRLSFFWAIGMNHFMEIAKMRAARMLWAKIVKQFDPKNPKSLALRTHSQTSGWSLTEQDPFNNVARTAIEAMGAALGHTQSLHTNALDEAIALPTDFSARIARNTQIYIQEETNVCREIDPWAGSYYVETLTNEIAHKAWEHIQEIEKLGGMAKAIETGIPKMRIEEAAARKQARIDSGAEKIIGVNEYRLEKEAPIDILAVDNTAVRESQIKRLKELRASRDEAAVKKALEAITECVKTKQGNLLELAVEAAKVRATLGEISDACEVVVGRYKAVIRSISGVYSSEVKNDKSFEHAKELCAEFAKKEGRQPRIMIAKMGQDGHDRGAKVVATGYADIGFDVDMGPLFQTPEEAAKQAVENDVHVVGVSSLAAGHLTLVPQLIAELKKLGREDIIVIVGGVIPHQDYDELYRDGAAAIFGPGTPIATAAIKILEILMAD
>NZ_AP019736.1|WP_141429275.1|2240822_2242697_-|hypothetical-protein
MYVRFCIILLLLSAAASASFARVAGPGMRSPKRTVPDTVRTHTPDRFTPDSARIANPRAAARNARLYDSIRSKTERRRVPHLLYKMLFVRPVLDTTSNGRVTDESLLLAPYAGKTIGDITIERRQVFDNGGNWLERTSNKLHYLTRDRVIRRDLLFGPGDRFDPQLVVRNKQLLRSRSYIADVDIAVLPDSLDTTRVNLLITTRDSWTISADGALHSEGRTMVGLSDANILGTGNSLKFMTNFSRSDFSYGGNMFEYEIPNLLGTFYTAEFAAGRDFYNSTLELGMRKEFLKRTDYELGLTYSDNKAKRYMIETDTSLLVKERNLDAWGGYSHYLPGIRSSLYLTGRYNYRRFSRRPPVRADYNPALHDQDVLLLGTGLYRERFYTANMIYGFGAREYLASGYKAEAVGGYSWGEFDDAMYLGLSFEAGGFRTMGYIMGGFTLGSYIDLASGMWRRSAVDIDLRWFSNLFMVRRSRIRQFLAFNYTQGWNRLQGNDESIRFTHVNGLQALKEHITGTNRMILNTETVIFTPYQPLGFRIALFGFADFGLLGYSPNIFKNEFYTSFGLGVRLRNERLVFNTIQIRLGLALGKPGLVESDFFRISNSTRLEQYRYRPTRPEIVGFE
>NZ_AP019736.1|WP_141429277.1|2242981_2243362_-|TraR/DksA-C4-type-zinc-finger-protein
MADERTRYSDAELEEFKQLILKKLESARADYELLRATITHTADNDTEDTSPTFKVLEEGAATLSKEESGRLAAHQMKFIRNLEMALVRIENKTYGICKTTGKLIPKERLMKVPHATECIEAKEGRK
>NZ_AP019736.1|WP_141429279.1|2243443_2246929_-|isoleucine--tRNA-ligase
MKFKEYKGLDLAGLAADVLSEWDARDTFHKSISTREGRPTFVFYEGPPSANGQPGIHHVMARTIKDVFCRYKTQQGYLVHRKAGWDTHGLPVELGVEKKLGITKEDIGKTISIEEYNRACREAVMEFTGMWEQLTRKMGYWVNMDDPYITYDNKYIETLWWLLKQLFDKGLLYKGYTIQPYSPAAGTGLSTHELNQPGCYRDVKDTTVVGQFRIKHPKPGMEGWGTPYFLAWTTTPWTLPSNTALCVGPKFDYVAVRTWNAYTGEKMTVVLAKALLYAHFNKKAEGLALDAYKPGDKLVPFEIAGEYKGPELEGMEYEQLLPWVKPVETDAEGMWHDASQKAFRVILGDYVTVEDGTGIVHIAPTFGADDAFVARAAGIPSLFMINKKGETRPMVDLQGRFYRLEELDERFVRECMDVEAYREYEGRWVKNAYDPQFTVEGRYDEKAAAAAETLDIYICMKMKAAGQAFRIEKHVHNYPHCWRTDKPVLYYPLDSWFIRTTALKERMIELNRTIRWKPESTGTGRFGKWLENLNDWNLSRSRFWGTPLPIWATEDRSEVKCIGSVGELVAEIEKSVAAGLMTENPYRNFRVGDMSEENYSTKNIDLHRPYVDSIVLTSSKGEPMRREPDLIDVWFDSGAMPYAQVHYPFEHEADFGEVYPADFIAEGVDQTRGWFFTLHAIATMLFDSVAFKNIISNGLVLDKNGNKMSKRLGNAVDPFEVLSTYGPDATRWYMISNSQPWDNLKFDRDGVDEVRRKFFGTLYNTYSFFALYANVDGFTGREAEIPMERRPEIDRWIVSLLNTLVRDVTESLESYDPTPAARAIQEFVGENLSNWYVRLNRKRFWGGGMSEDKLAAYQTLYTCLETVAMLSAPFAPFISDRIFTDLNAVSGRHTDESVHLAAFPKADEGLIDARLEDMMALAQKVSSMVLALRRKVSIKVRQPLTKILIPVLDPVTAEHIAAVKNLIMGEVNVKQVQLIEETTGVITKRIKPNFKTLGPRYGKYMKQIAALTAEFSQERIAQIEAAPETVLDLGGERITVTPADFEITSEDMPGWLVASEGKLTVALDITVTDELKAEGVARELINRIQNIRKESGFEVTDRIRVEIERKPCVAEGIARFADYIAAQTLAVEVRTAEAPAGETVVESEIDDEPLQIAVTRI
>NZ_AP019736.1|WP_141429281.1|2247183_2249013_-|ATP-binding-cassette-domain-containing-protein
MFKTYMRLLGFARPIKRYAIPYGIFSLLYALFNTLTFGLIIPILNTMFDDGFTPEYVEKLPPLRLDGDYLNVLFNYAYSHLFDAYDPRNVLLLLAVVAVVISFLSNLFRYLGSWTIETMRARTLQRMRNEMFSRVMDMNVGYFSEQRKGDIISKITSDIGVVQFCITNTLQVSFREPFLIVGYIVMMVAISWELSIFSILFLPVVALIIGSIVKRLRHPARTNQHRMGEMVSTLEESLAGIKVIKSYNATRYVKRKFFEISADLARLTLSMARRQQLASPMSEFLGITAVGVILVFGGSLVTKGSLDPGGFIAFVAIFSQITRPVRIFIDQFANINQGIAAGERIFSVIDTRPEIEDRPGARELKGLREKIEFRDVHFSYDGQHEVIDGISFEIRRGETVALVGPSGGGKSTLSELLPRFYDPTSGEIAIDGIPLRDYTQESLRAHMSVVAQDTVLFNDTIESNIAMGKPGATHEEIVEAARIANADQFIRECAEGYSTNIGDRGVKLSGGQRQRLSIARAVLKNPDILILDEATSALDTESEKLVQEALNKLLEGRTSVVIAHRLSTIHNADKIIVVDHGRIAEQGTHNELMARGGIYAKLIEMQSFD
>NZ_AP019736.1|WP_141429283.1|2249232_2249697_-|ribonuclease-HI
MPAITIYTDGSALGNPGPGGYGAVLLAGPHRKELSQGYRLTTNNRMELTGVCAALEALRFDGSEVVIYSDSKYVVDAVTKGWVFGWEKKGFAGKKNPDLWRRFLRAYRRHHVRFVWVKGHAETVENNRCDFLAVAAANDAAHRIEDTGYEAEGR
>NZ_AP019736.1|WP_141429285.1|2249850_2252478_-|valine--tRNA-ligase
MQIADKYSPREIESKWYDYWTGHRLFHSEPDQREPYTIVIPPPNVTGMLHMGHMLNNTLQDVLVRRARMSGRNACWVPGMDHASIATEAKVVAMLRERGIEKSQLTREEFLRYAWEWKEKYGGVILKQLRRLGASCDWERTCFTMDETRTESVIRVFCDLYDKGKIYRGVRMVNWDPAAQTALSDEEVVFKESHGKLYYLRYKVEGTDRTIVVATTRPETILGDTALCVNPGDPRYAWLPADARVVVPLVGRSIPVIRDEYVDIEFGTGALKVTPAHDVNDYMLGEKYGLETIDIFNDDGTINDKVGMYAGQDRFDVRRQIEKDLAVAGLLEKTEEYTNNVGYSERTGVAIEPKLSMQWFLSMGELAGPATKAVMEDAIRFVPEKYKNTYRHWMENIKDWCISRQLWWGQRIPAYYLPKGGFVVAPTAEEALEKARAKTGDASLKADDLRQDEDVLDTWFSSWLWPISVFDGIRNPGNREIRYYYPTDDLVTGPDIIFFWVARMIMAGYEYRQEKPFENVYFTGIVRDKIGRKMSKQLGNSPDPLDLIARYGADGVRMAMLISSSAGNDVMFDEALCEQGRNFGNKIWNAYRLVNGWTTDAAAAQSENDRLAVEWFDQAMGRSLRQIAEDFRSYRISEAFKEAYRLFWDDFSGLYLETVKPAYGQPTDPRTMEATKGYFDALMRLLHPFMPFVTEEIWQALAPRAEGESICVAPMPEPCAERPETLARFELAKEVVSAVRNIRNQKNLPQKEALALHVIADGNYPAEYAPVMRKLANLSAIETVAEKDPAAAAFLVKTTQYFVPMEGRIDAEAERAKLRRDLEYYEGFLASVMKKLSNERFVQSAPEKVVANERAKQADAEAKIAAIREQLEALA
>NZ_AP019736.1|WP_141429287.1|2252594_2255024_+|endopeptidase-La
MSKKDKIETIEADDANLVPELLDGKHRVIPIVTGGDETVEQVEVPEIIPILTLRSSVLFPGAITPITVGRDKSISLVRAVNAEGGILGAVLQRESEVEDPSPDDMYKVGTAARIIKILEMPNGNLTVILNGLEKIEITEYVTTEPYFKARVVALRDSTPDLKSIEFEALVDSIRDVALGIINVSPTMPKEAAFAIKNIDSKRGIINFICSNMELTDEDRQSLLEAPGLLARARKLLEILIREQQLAELKNQIQERVKQEIDKQQRDYYLQQQMRTIQDELGDGADADIERMREEAKKKNWPKEVGETFEKELQKVERLNPAVAEYSVQMTYLQLLLELPWNDVTQDNLDLKCAREQLDRDHFGLDEVKERLLEHLAVIKLKGDLKSPILCLYGPPGVGKTSLGKSVAAALGRKFGRISLGGLHDESEIRGHRRTYIGAMPGRIIQTIKRCGSSNPVIILDEVDKVTVSNHGDPSSALLEVLDPEQNTTFHDNYIDMEYDLSKVLFIATANNVGNIAPALRDRMEMINIPGYLLEEKVRIALDHLLPKQREAHGIKEGELVMTPAVVEHVIASYTREAGVRSLDKLLAKIARARAKQIAFDEAFAPEIGEKDVERILGMPKFLREQYEVGGMTGVVTGLAWTEVGGDILYIESVLTPGKGKVSLTGNLGAVMKESATIAHEWVMAHHEELGIDPEAFEKNDINIHVPEGAIPKDGPSAGITMVTSIVSTYTGRKVKERIAMTGETTLRGRVMPVGGVKEKILAAKRAGITELILSEENRKDIAEIKPEYVEGLTFHYVRTNDEVLRLALE
>NZ_AP019736.1|WP_141429289.1|2255049_2255562_+|GNAT-family-N-acetyltransferase
MFRIRPAFVSDIPAMRLLFRETVLSVNRRDYTAEEVADWASCGEGETHWRELFARQRCFVAEDARGKMTGFASADGEGYMHMLFVHKDFQRCGVATALYAAVERFAREAGAVRIASEVSETARGFFERQGFRVDAKQRRRAGRLELTNYRMSKALEPFCGSGETDELHIL
>NZ_AP019736.1|WP_141429290.1|2255558_2255942_+|MmcQ/YjbR-family-DNA-binding-protein
MNIEEFRNFCLSLPGAHDDFPFGKASSDYDRNLLVFYVADKWFCFVNAEAFDFCTLRCAPEEIGALRERYEGVGPGWHMDKRHWISVRFDSDVPDGVLLEMVRKSYELAEAKLTKRQRSALAERIEP
>NZ_AP019736.1|WP_141429293.1|2255938_2256691_+|3-deoxy-manno-octulosonate-cytidylyltransferase
MKFIAIIPARYASTRFPGKPLALLGGKPVIRRVYEQVAGVLDDVAVATDDERIREAVLAFGGRVVMTSPDHRSGTDRCREAYDRIGGAFDAVVNVQGDEPFVRASQLETLMRCFDDPGTDIATLVRPFAPEDGLAALENPNSPKVVLDAHSRALYFSRSVVPYLRGVPREEWLARHTFYKHIGIYAFRTEALRAVTALPPSPLEGAESLEQLRWLENGFRIGVGVSDAETVGIDTPGDLVRAEAFLKQFE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_AP019736_1	1.1\|2239951\|30\|NZ_AP019736\|CRISPRCasFinder	2239951-2239980	30	NZ_CP054608	Sulfitobacter pseudonitzschiae strain H46 plasmid unnamed9, complete sequence	126-155	8	0.733
NZ_AP019736_1	1.1\|2239951\|30\|NZ_AP019736\|CRISPRCasFinder	2239951-2239980	30	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	515615-515644	9	0.7

1. spacer 1.1|2239951|30|NZ_AP019736|CRISPRCasFinder matches to NZ_CP054608 (Sulfitobacter pseudonitzschiae strain H46 plasmid unnamed9, complete sequence) position: , mismatch: 8, identity: 0.733

cgggatttccgaggcgggggcctatttcga	CRISPR spacer
cgggatttacgaggcggggggctgccgctg	Protospacer
******** *********** **... * .

2. spacer 1.1|2239951|30|NZ_AP019736|CRISPRCasFinder matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.7

cgggatttccgaggcgggggcctatttcga	CRISPR spacer
ggggatttccggggcgggggccgccacggc	Protospacer
 **********.**********  . . *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

156317 : 165318

unidentified_phage(71.43%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004293560.1\|156317_157673_+	hypothetical protein	H7BUJ9	unidentified_phage	2.9e-133	51.8
WP_008860776.1\|157689_158052_+	hypothetical protein	NA	NA	NA	NA
WP_004293559.1\|158307_159348_+	toprim domain-containing protein	H7BUJ8	unidentified_phage	7.6e-118	58.7
WP_004293558.1\|159344_161102_+	PHP domain-containing protein	H7BUJ7	unidentified_phage	7.8e-115	47.5
WP_009316563.1\|161067_161835_+	site-specific DNA-methyltransferase	A0A2I7QM56	Vibrio_phage	7.9e-64	50.6
WP_004322855.1\|161827_162370_+	HNH endonuclease	E5DV63	Deep-sea_thermophilic_phage	2.0e-29	44.6
WP_009316564.1\|162366_164544_+	DNA polymerase III subunit alpha	H7BUJ5	unidentified_phage	9.9e-253	57.0
WP_008860772.1\|164550_165318_+	3'-5' exonuclease	H7BUJ3	unidentified_phage	1.3e-71	54.1

Anti-CRISPR protein detection

Acr_ID: NZ_AP019736.1|WP_032135197.1|336417_336837_+|PcfK-like-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_AP019736.1|WP_032135197.1|336417_336837_+|PcfK-like-protein

336417_336837_+

139 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|40	0.5909090909090909	0.9568345323741008	0.9290780141843972

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_AP019736

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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