CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP041189	Pseudomonas sp. NIBRBAC000502773 chromosome, complete genome	1 crisprs	DEDDh,cas3,csa3,RT,DinG,WYL	0	0	4	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP041189_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041189_1

1237615-1237829

Orphan

Consensus_repeat	Method
GGCTTGGTGTCCGGCACCCGGGCTTCGGGTTGTGGAGTCACCTCGGCCTTGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041189_1

>merge|NZ_CP041189|1|1237615-1237829|CRISPRCasFinder
GGATGGCTGCCCGGAACCTTGACTTCGGGTTGCGGAGTCACCTCGGCCTTGGGTATCGACGCAGGCTTGGGCTGCACGCCAGGCTTGGTGTCCGGCACCCGGGCTTCGGGTTGTGGAGTCACCTCGGCCTTGGGTATCAACGCGGGCTTGGGCTGCACGCCGGGCTTGGTGTCCGGCACCCGGGCTTCGGGTTGTGGAGTCACCTCGGCCTTGGG

>NZ_CP041189|1|1|1237615-1237829|CRISPRCasFinder
GGATGGCTGCCCGGAACCTTGACTTCGGGTTGCGGAGTCACCTCGGCCTTGGG	TATCGACGCAGGCTTGGGCTGCACGCCAGGCTTGGTGTCCGGCACCCGGGCTTCGGGTTGTGGAGTCACCTCGGCCTTGGGTATCAACGCGGGCTTGGGCTGCACGCCG
GGCTTGGTGTCCGGCACCCGGGCTTCGGGTTGTGGAGTCACCTCGGCCTTGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041189.1\|WP_027604058.1\|1246742_1247939_+\|aspartate/tyrosine/aromatic-aminotransferase	unknown	unknown	gnl\|CDD\|181731
NZ_CP041189.1\|WP_098479026.1\|1248246_1249119_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176133
NZ_CP041189.1\|WP_027604071.1\|1225326_1226439_-\|aspartate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|235839
NZ_CP041189.1\|WP_141155596.1\|1249222_1250614_+\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|184426
NZ_CP041189.1\|WP_141155589.1\|1230747_1231638_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP041189.1\|WP_016970937.1\|1248040_1248250_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041189.1\|WP_141155586.1\|1224068_1225079_-\|aspartate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|168165
NZ_CP041189.1\|WP_141155591.1\|1234986_1236261_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041189.1\|WP_115486905.1\|1241389_1241929_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP041189.1\|WP_005789780.1\|1242768_1244250_-\|glutamate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234953
NZ_CP041189.1\|WP_115486907.1\|1240067_1240502_-\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|223894
NZ_CP041189.1\|WP_141155587.1\|1227638_1228403_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|369777
NZ_CP041189.1\|WP_141155590.1\|1231704_1234983_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NZ_CP041189.1\|WP_141155595.1\|1240541_1241375_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|366166
NZ_CP041189.1\|WP_141155588.1\|1228533_1229178_-\|3-isopropylmalate-dehydratase-small-subunit	unknown	unknown	gnl\|CDD\|179314
NZ_CP041189.1\|WP_027604068.1\|1229188_1230607_-\|3-isopropylmalate-dehydratase-large-subunit	unknown	unknown	gnl\|CDD\|235490
NZ_CP041189.1\|WP_141155594.1\|1239052_1240012_-\|tRNA-dihydrouridine-synthase-family-protein	unknown	unknown	gnl\|CDD\|239200
NZ_CP041189.1\|WP_141155592.1\|1236333_1237308_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237868
NZ_CP041189.1\|WP_017530190.1\|1226503_1227586_-\|3-isopropylmalate-dehydrogenase	unknown	unknown	gnl\|CDD\|234832
NZ_CP041189.1\|WP_115486904.1\|1244383_1246399_-\|excinuclease-ABC-subunit-UvrB	unknown	unknown	gnl\|CDD\|235395

Protein	Function_ID	Function_description	E-value
NZ_CP041189.1\|WP_027604058.1\|1246742_1247939_+\|aspartate/tyrosine/aromatic-aminotransferase	gnl\|CDD\|181731	PRK09257, PRK09257, aromatic amino acid transaminase.	0
NZ_CP041189.1\|WP_027604071.1\|1225326_1226439_-\|aspartate-semialdehyde-dehydrogenase	gnl\|CDD\|235839	PRK06598, PRK06598, aspartate-semialdehyde dehydrogenase; Reviewed.	0
NZ_CP041189.1\|WP_141155596.1\|1249222_1250614_+\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|184426	PRK13968, PRK13968, putative succinate semialdehyde dehydrogenase; Provisional.	0
NZ_CP041189.1\|WP_098479026.1\|1248246_1249119_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176133	cd08442, PBP2_YofA_SoxR_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators, YofA and SoxR, contains the type 2 periplasmic binding fold. YofA is a LysR-like transcriptional regulator of cell growth in Bacillus subtillis. YofA controls cell viability and the formation of constrictions during cell division. YofaA positively regulates expression of the cell division gene ftsW, and thus is essential for cell viability during stationary-phase growth of Bacillus substilis. YofA shows significant homology to SoxR from Arthrobacter sp. TE1826. SoxR is a negative regulator for the sarcosine oxidase gene soxA. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine, which is involved in the metabolism of creatine and choline. The topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.377e-86
NZ_CP041189.1\|WP_141155588.1\|1228533_1229178_-\|3-isopropylmalate-dehydratase-small-subunit	gnl\|CDD\|179314	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit.	1.56799e-144
NZ_CP041189.1\|WP_141155586.1\|1224068_1225079_-\|aspartate-semialdehyde-dehydrogenase	gnl\|CDD\|168165	PRK05671, PRK05671, aspartate-semialdehyde dehydrogenase; Reviewed.	0
NZ_CP041189.1\|WP_027604068.1\|1229188_1230607_-\|3-isopropylmalate-dehydratase-large-subunit	gnl\|CDD\|235490	PRK05478, PRK05478, 3-isopropylmalate dehydratase large subunit.	0
NZ_CP041189.1\|WP_115486905.1\|1241389_1241929_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	3.11784e-08
NZ_CP041189.1\|WP_005789780.1\|1242768_1244250_-\|glutamate--tRNA-ligase	gnl\|CDD\|234953	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.	0
NZ_CP041189.1\|WP_115486907.1\|1240067_1240502_-\|acyl-CoA-thioesterase	gnl\|CDD\|223894	COG0824, FcbC, Predicted thioesterase [General function prediction only].	7.52504e-32
NZ_CP041189.1\|WP_141155587.1\|1227638_1228403_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	4.59514e-29
NZ_CP041189.1\|WP_141155590.1\|1231704_1234983_+\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	3.07064e-113
NZ_CP041189.1\|WP_141155595.1\|1240541_1241375_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|366166	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	8.43597e-11
NZ_CP041189.1\|WP_141155589.1\|1230747_1231638_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	4.55421e-54
NZ_CP041189.1\|WP_141155594.1\|1239052_1240012_-\|tRNA-dihydrouridine-synthase-family-protein	gnl\|CDD\|239200	cd02801, DUS_like_FMN, Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.	5.33716e-90
NZ_CP041189.1\|WP_141155592.1\|1236333_1237308_-\|hypothetical-protein	gnl\|CDD\|237868	PRK14960, PRK14960, DNA polymerase III subunit gamma/tau.	0.00394552
NZ_CP041189.1\|WP_017530190.1\|1226503_1227586_-\|3-isopropylmalate-dehydrogenase	gnl\|CDD\|234832	PRK00772, PRK00772, 3-isopropylmalate dehydrogenase; Provisional.	0
NZ_CP041189.1\|WP_115486904.1\|1244383_1246399_-\|excinuclease-ABC-subunit-UvrB	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0

>NZ_CP041189.1|WP_141155592.1|1236333_1237308_-|hypothetical-protein
MSYCSIDNIARVVDVRQVLNSDLSAPANELMPSYRFKPVEPVKAAVSTPLGVPRSNTAVGADSNPAASLVALFTSFFTQLFNLLSNKTDKVVPENTPLPQVTPTVDPPAPPEPQPQPQPQPRQNFPIANLSDKRNGAKPDNIWSGFRQGPDGNCVTVSAIKAAMYKFGQSPTDIYKEVVKTNNGYRVTMRDDFVLNLTDQELKVGAAGSLFIGSDKGMLKDAQFLFAVSAKRAQMENNDGWASRSYRAAVRTLNDGEDDDGPGEGFLRLGLRKHMKRVNVRDLAKGQLGMCNRARHSVAVINGREEIYGRQGSAPTRGVAIALV
>NZ_CP041189.1|WP_141155591.1|1234986_1236261_-|hypothetical-protein
MNTLIEGRGPVMANRPYEYVSSISNTRAGVKLDDPVNAFNAAERRFGENYDCSTHAAVIKMMMMTFGRHPTDVFNEVVPAGDGYAVTMKDQYNVHVSQAELERAAQACRFTGRDPEAVKHASFMFAAFVKRKQLSGGYGTFDAALAKTLEGETSKRCLEGMGVYGLSRSVEASDMVGREAAWVRQTHAFGAAVVVNGVVSNYGRQGPAEGGYGYVLFDDRQVPSHPGVEVSLVSESIRHADIWSGFYQGAEGNCVTVSAIKAAITRFPDGIYTAIHRTPDGCEVTMRDGVRLRLTNEELRQATAASNFLGSNRVLLDYANFLYAVSAKRAQMENNDFRARQSYTVALETLNDGEAPDEALLRLGLFGYMRNSTVDELAQGVIGTMEDGWHSVAVVGGALDLYGQKHALHTSPWKRRALSALKLV
>NZ_CP041189.1|WP_141155590.1|1231704_1234983_+|EAL-domain-containing-protein
MRNPVDPLPPLPRIYALDPQQAEQSWDSAPQLLAALNAARLGAWCWEIDTGRISWSRGTQALFGFDPRQPLPKDLDYLDLLAPSDRSRVVRAFHAVLAGEPFEQAMHHHIQWPDGTYHWLEINGSLAPDKAGRRRMIGVIRETTRQREREHALSHSEKRFATLFHLCPNMVLLTRQRDGLISEANQYFEMLFGWPVADAIGRTTLDLGLWRHPEQRAQLVQATQRKGEPITMEVQFCASNGQIHDGTLSAQKVELEGEAYLISTFLDTTERKNAENALKDSQERLDLALDSAQLGTWDWHIPTGMLYGSARAAQLHGLPPEPFHESFEAFFEGMPRQERENMRNAYRTLREGPAGNYQLTYRVPLDDGSSRYLESRARLYRDEQGAPLRMAGTLLDITDQVEREQRLTASEEKFASLFQASPDPICVTCLDSGAFIEINPAFTQTFGWTAAEVIDKSAEQIGLWDESSKRLQRIEQVIRDQALSNVAIVVHHRNGQILTCMISSRLIKVGDQPCIVTTLRDITQQQRSEAALKASEEKFAKAFHSSPDAISITERDTGRYVEVNDGFCRLTGYRAEEAIGLTLYQIGIWADENQRSALLAELQIKGRIPHLEMLWHNKRGDVLAVEVSVEPITLNETPCLLLTARDVSLLKNAQAQIRHLAYHDPLTNLPNRALLMDRLSQQIALLKRHNLRGALLFLDLDHFKHINDSLGHPVGDTVLKIVTARLEASVRMEDTVARLGGDEFVVLLSGLDGTRTQVSTQVQELADTLRELLSEPMFLDGHRLQVTPSIGVALIPDHGTTPADLLKRADIALYRAKDSGRNTTQMFHNSMQKAASERLRMETDLRLALSRGEFSVHYQPQVDARGNKIVGAEALVRWQHPQLGAQSPSEFIKVLEDSGLILEVGTWILDEACAAFAELIAEGLVDPLNFSLCVNISPRQFRQNDFVERVERSLKRHQLPCNLLKLEITEGIVIQNLDDTVAKMRRLKKLGVSFAMDDFGTGYSSLTYLKRLPVDALKIDQSFVRDATHDPNDAEIIRAIVAMARSLNLTVIAEGVETPEQLAFLQKLGCHLFQGYLHSRPLPIEGFRRLLG
>NZ_CP041189.1|WP_141155589.1|1230747_1231638_+|LysR-family-transcriptional-regulator
MDLANLNAFIAIAETGSFSGAGERLHLTQPAISKRIAGLEQQLKVRLFDRLGREVGLTEAGRALLPRAYQILNVLDDTRRALTNLTGEVSGRLTLATSHHIGLHRLPPILRTFTREYPNVALDIQFLDSEVAYEEILHGRAEVAVITLAPAPHHLVRATPVWDDPLDFVVAPEHSLTGNREVSLADIAGHPAVFPGGNTFTHHIVSRLFEAQGLTPNIAMSTNYLETIKMMVSIGLAWSVLPRTMLDEQVASIALPGIQLSRQLGYIVHTERTLSNAARAFMSLLDAQVDLPVIPV
>NZ_CP041189.1|WP_027604068.1|1229188_1230607_-|3-isopropylmalate-dehydratase-large-subunit
MAGKTLYDKLWDSHEVKRRDDGSSLIYIDRHIIHEVTSPQAFEGLRLAGRKPWRVDSIIATPDHNVPTTPERKGGIDAIVDTVSRLQVQTLDDYCDEYGITEFKMNDVRQGIVHVIGPEQGATLPGMTVVCGDSHTSTHGAFGALAHGIGTSEVEHVFATQCLVAKKMKNMLVRVEGTLPFGVTAKDIVLAVIGKIGTAGGNGHAIEFAGSAIRDLSIEGRMTICNMSIEAGARVGMVAADEKTVEYVKGRPFAPQGADWDAAVEAWKDLVSDADAVFDTVVELDAAQIKPQVSWGTSPEMVLAVDQNVPDPAQEADLVKRGSIERALKYMGLKANQAITDIQLDRVFIGSCTNSRIEDLRAAAVIAKGRKVASTIKQAIVVPGSGLVKAQAEAEGLDKIFLEAGFEWREPGCSMCLAMNPDRLESGEHCASTSNRNFEGRQGAGGRTHLVSPAMAAAAAVNGRFIDVRELI
>NZ_CP041189.1|WP_141155588.1|1228533_1229178_-|3-isopropylmalate-dehydratase-small-subunit
MRAFTQHTGLVAPLDRANVDTDQIIPKQFLKSIKRAGFGPNLFDEWRYLDVGYAYQDNSKRPLNKDFVLNAERYQGASVLLARENFGCGSSREHAPWALEEYGFRSIIAPSYADIFFNNSFKNGLLPIILTDEEVDELFKQVEADEGYQLTIDLAAQTVTRPDGKVYHFEVDAFRKHCLINGLDDIGLTLQDGDAIAAFEARHRASQPWLFRDA
>NZ_CP041189.1|WP_141155587.1|1227638_1228403_-|methyltransferase-domain-containing-protein
MTSTAHTQVVQKQFGEQASAYLSSAVHAQGTEFALLQAELAGQGDARLLDLGCGAGHVSFHVAPLVKEVVAYDLSQQMLDVVAAAAQDRGLTNISTVNGAAERLPFADGEFDFVFSRYSAHHWSDLGVALREVRRVLKPGGVAAFIDVLSPGSPLLDTYLQTVEVLRDTSHVRDYSAAEWMRQLSEAGLHVRNSSRQRLRLEYTSWVERMRTPQVLRAAILELQQAMGQEVRDYYEIQADGTFSTDVLVVWAER
>NZ_CP041189.1|WP_017530190.1|1226503_1227586_-|3-isopropylmalate-dehydrogenase
MSKQILILPGDGIGPEIMAEAVKVLELANSKYSLGFELSHDVIGGAAIDKHGVPLADETLDRARAADAVLLGAVGGPKWDKIERDIRPERGLLKIRAQLGLFGNLRPAILYPQLADASSLKPEVVAGLDILIVRELTGGIYFGSPRGVRELENGERQAYDTLPYSESEIRRIARVGFDMARVRGKKVCSVDKANVLASSQLWREIVEEVAKDYPDVELSHMYVDNAAMQLVRAPKQFDVIVTDNLFGDILSDQASMLTGSIGMLPSASLDTNNKGMYEPCHGSAPDIAGQGIANPLATILSVSMMLRYSFNLSDAADAIEKAVSLVLDQGLRTGDIWSQGCTKVGTQEMGDAVVAALRNL
>NZ_CP041189.1|WP_027604071.1|1225326_1226439_-|aspartate-semialdehyde-dehydrogenase
MKRVGLIGWRGMVGSVLMQRMLEEQDFDLIEPVFFTTSNVGGQGPSVGKDIAPLKDAYSIEELKTLDVILTCQGGDYTSEVFPKLREAGWQGYWIDAASSLRMQDDAVIILDPVNRKVIDQQLDAGTKNYVGGNCTVSLMLMGLGGLFEAGLVEWMSAMTYQAASGAGAQNMRELIKQMGATHAAVADQLADPASAILDIDRRVAEAMRSDAYPTENFGVPLAGSLIPWIDKELPNGQSREEWKAQAETNKILGRFKSPIPVDGICVRIGAMRCHSQALTIKLNKDVPIADIEGLISQHNPWVKLVPNNRDISMQELSPTKVTGTLNVPVGRLRKLNMGTQYLGAFTVGDQLLWGAAEPLRRMLRILLER
>NZ_CP041189.1|WP_141155586.1|1224068_1225079_-|aspartate-semialdehyde-dehydrogenase
MTQTFEIAVIGATGTVGETLVQILEELAFPVGTLYLLAGSNSAGASVPFRGKNVRVKEVDEFDFSKVQLAFFAAGPAVTLSFAPRATAAGCSVIDLSGALPAEQAPQVVPEANAHVLDGLKKPFQLGSPSPSATNLAVVLAPLRGLLDIQRVAVTASLAVSAQGREAVSELARQTAELLNVRPLEPKFFDRQMAFNLLAQVGTPDAQGHTALEKRLVHELRAVLELPLLKISATCVQAPVFFGDSLTVSLQLGAAVDLAAVNRALEAAPGIELVEEGDYPTAVGDAVGQDVVYVGRVRAGVDDPAELNLWLTSDNVRKGAALNAVQLAQLLIKRLA
>NZ_CP041189.1|WP_141155594.1|1239052_1240012_-|tRNA-dihydrouridine-synthase-family-protein
MQIALAPMEGLVDNILRDVLTRVGGIDWCVTEFIRVNDRLLTPAYFHKLAPELLHGAHTAAGVPLRVQLLGSDPVCLAENAALACELGSEVIDLNFGCPAKTVNKSRGGAVLLKEPELLNQIVEHVRRAVPAHIPVTAKMRLGFDSPDGALVCATALAEGGAAHIVVHARTKTDGYKPPAHWEWIPRVQEVVKVPVFANGDIWSVEDWRRCREISGVEDIMLGRGLVARPDLARQIAAARAGDEVVEMTWAQMQPMLQDFWTQSVAQLTERQAPGRLKQWLAMLTRNYPEAVALFTALRRETELGQVSRLLGMDTPAAA
>NZ_CP041189.1|WP_115486907.1|1240067_1240502_-|acyl-CoA-thioesterase
MGWDLATPFIIDLQVAPEDIDGLGHANNAVYVSWLERCAWRHSQRLGLDLTEYRRLDRAMAVVRHEIDYLAAGYEGDELQLATWIVDWDQRLKMTRRFQLVRPRDGATLLRAHTTFVCIELSSGKPKRMPAEFLDGYGPALTGG
>NZ_CP041189.1|WP_141155595.1|1240541_1241375_-|alpha/beta-fold-hydrolase
MGALTWIRRFNGTLGHLAPQTVANKMRRAFMTPRDLPPRDWELPLLAQSERITLRFGLSALRWGQGPAVLLMHGWEGRPTQFASLITALVGNGYSVIALDGPAHGRSPGREAHVLLFARAMLEAAAELPPLHAVIGHSMGGASAMLAVQLGLRTEALVSIAAPSRFLDVLRGFTTMVGLPARARSAFIQEVELTFGMPLKHLDVAHYQMNIPGLIVHAEDDTFVPVKASQAIHEAWFDSRLLRLEQGGHQKVLADPRVIEGVLALLAGCRLQDRQTA
>NZ_CP041189.1|WP_115486905.1|1241389_1241929_-|TetR/AcrR-family-transcriptional-regulator
MSDKKAQTRERILQAASTALTQRGPAEPSVGEVMGAAGLTVGGFYAHFESKDALMLEAFTQLLARRRASIDDMDAQLTGEERRGLVAAFYLSRKHRDSTVQACPIPATVGEMARLPNAFREALSEHVELMAAQLAASPEDTDKALADMALMIGGLALARALGPGELSDRVLRAAKSAVR
>NZ_CP041189.1|WP_005789780.1|1242768_1244250_-|glutamate--tRNA-ligase
MTTVRTRIAPSPTGDPHVGTAYIALFNYCFAKQHGGEFILRIEDTDQLRSTRESEQQIFDALRWLGITWAEGPDVGGPHGPYRQSERSDIYKQYTQQLVDMGHAFPCFCTAEELDQMRAEQQARGETPRYDGRALLLSKEEVAARLAAGEPHVIRMKVPSEGVCVVPDMLRGDVEIPWDRMDMQVLMKTDGLPTYFLANVVDDHLMGITHVLRGEEWLPSAPKLILLYEYFGWEQPQLCYMPLLRNPDKSKLSKRKNPTSVTFYERMGFMPEAMLNYLGRMGWSMPDEREKFSLQEMVDNFDLSRVSLGGPIFDIEKLSWLNGQWLRDLPVEEFASRVQQWALNPEYMMKIAPLVQGRVETFSQVAPLASFFFAGGVNPDAKLFESKKLSGDQVRQLMQLILWKLESLRQWEKDAITATIQAVVESLELKLRDAMPLMFAAITGQASSVSVLDAMEILGPDLTRFRLRQALDLLGGVSKKENKEWEKLLGAIA
>NZ_CP041189.1|WP_115486904.1|1244383_1246399_-|excinuclease-ABC-subunit-UvrB
MSDFQLVTRFEPAGDQPEAIRQMVEGIEAGLAHQTLLGVTGSGKTFSIANVIAQINRPTLVLAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRLSATKALLERKDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRELLRRLTSLQYTRNDMDFARATFRVRGDVIDIYPAESDLEAIRIELFDDEVESLSAFDPLTGEVIRKLPRFTFYPKSHYVTPRETLMGAIEGIKVELAERLEYLRANNKLVEAQRLEQRTRFDLEMILELGYCNGIENYSRYLSGRDSGAPPPTLYDYLPDDALLVIDESHVSVPQVGAMYKGDRSRKETLVEYGFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHAGRVIEQLVRPTGLVDPEIEIRPALTQVDDLLSEITKRVALEERVLVTTLTKRMSEDLTDYLADHGVRVRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGRAILYADRITGSMERAIGETQRRRDKQIAFNLENGITPKGVFKDVADIMEGATVPGSRSKKRKGMAKAAEESAKYENELRSPSEITKRIRQLEEKMYQLARDLEFEAAAQTRDEIGKLRERLLAV
>NZ_CP041189.1|WP_027604058.1|1246742_1247939_+|aspartate/tyrosine/aromatic-aminotransferase
MSLFSAVEMAPRDPILGLNEAFNADTRTTKVNLGVGVYCNEEGKIPLLRAVAEAEAIRVAQHAARGYLPIDGIAAYDKAVQTLLFGAESPLLNAGRVTTVQAVGGTGALKLGADFLKQLLPGAVVAISDPSWENHRALFETAGFPVQNYRYYDAATHDVNRAGLLEDLNALPPQSIVVLHACCHNPTGVDLSPADWQNVLDVVKARNLVPFLDMAYQGFGDGIHEDAAAVRLFAESGLTFFVSSSFSKSFSLYGERVGALSIVGDSKEESARILSQVKRVIRTNYSNPPTHGAAIVAAVLNNPELRAQWEAELAEMRLRIRGMREQMVAELAKAAPGHDFSFVGRQRGMFSYSGLTVEQVTRLRSEFGIYALDTGRICVAALNQSNIAAVTKAIVQVL
>NZ_CP041189.1|WP_016970937.1|1248040_1248250_+|hypothetical-protein
MRNDDLDLRADRDELHDYTPRAPQAKRQKSLVLQVALGVFLGGLALWLVQLGATAIMAKLAMGTFQFGG
>NZ_CP041189.1|WP_098479026.1|1248246_1249119_-|LysR-family-transcriptional-regulator
MDLVQLEIFKAVAEQGSISAAAQLIHRVPSNLTTRIKQLEQDLGVELFIREKSRLRLSPAGWNFLGYARRILDLVQEARATVAGEEPQGAFALGSLESTAAVRIPALLAAYNQKHTKVELDLSTGPSGTMIEGVLSGRLAAAFVDGPVLHATLEGVAVFEEEMVVIAPLHHAPITRGQDVNGESIYTFRSNCSYRHHFERWFAQDGAVPGRIFEMESYHGMLACVSAGAGLALMPRSMLESMPGFTTVSVWPLTDSFRTLHTWLIWRRGTVSQSLNSFVKLLEEQGVASA
>NZ_CP041189.1|WP_141155596.1|1249222_1250614_+|aldehyde-dehydrogenase-family-protein
MNAISHQTHALSINPATGETVGSYPYENAAQLDAALDRATAAFRTWRRQPVSQRAELLLALAGALRDQAEEMAQMITLEMGKPITQARAEIEKCAQLSEWYAAHGPAMLAPEPTLVDNGSARIEYRPLGPILAVMPWNFPVWQVLRGAVPTLLAGNTYVLKHAPNVMGSAYLMKAALQKAGFAEGLFEVINVTQDGVSTAIADPRIAAVTLTGSVRAGMAIGSQAGAALKKCVLELGGSDPFIVLNDADLDAAVQAAVIGRFQNSGQVCAAAKRLIIEAGVVDAFTAKFVEASRALVMGDPTSASTYVGPMARFDLRDELHGQVQATLEEGATLLLGGHKVAGAANYYEPTVLADVTDQMTSFKQELFGPVASIITARDADHAVALANDSEFGLTASLFTTDPAKARDIANQLDTGGIFINAFSVSDPRVAFGGVKKSGFGRELSHFGLREFCNAQTVWLDRK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

751357 : 761265

uncultured_Caudovirales_phage(71.43%)

protease,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_115488825.1\|751357_752182_-\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	5.8e-105	72.0
WP_027606356.1\|752446_753049_+	YIP1 family protein	NA	NA	NA	NA
WP_027606355.1\|753178_753673_+\|protease	SprT family zinc-dependent metalloprotease	NA	NA	NA	NA
WP_115488824.1\|753769_754945_-	CoA transferase	NA	NA	NA	NA
WP_141155368.1\|755102_755495_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	1.9e-53	79.2
WP_027606352.1\|755496_755847_+	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	2.0e-38	66.9
WP_141155369.1\|755846_756125_+	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	8.4e-24	54.5
WP_115488822.1\|756121_756457_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	1.0e-44	76.6
WP_141155370.1\|756453_757455_+	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	6.5e-167	85.1
WP_141155371.1\|757543_758539_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_074847172.1\|758589_759984_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_115488819.1\|759984_761265_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.2e-96	52.9

DBSCAN-SWA_2

2213008 : 2221491

uncultured_Caudovirales_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_141155968.1\|2213008_2214037_-	transporter substrate-binding domain-containing protein	A0A1B1IT51	uncultured_Mediterranean_phage	9.0e-71	38.5
WP_141155969.1\|2214260_2215511_+	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	A0A1V0SKB7	Klosneuvirus	1.2e-24	27.8
WP_115488660.1\|2215612_2216329_+	hypothetical protein	NA	NA	NA	NA
WP_141155970.1\|2216378_2217461_-	pyridoxal phosphate-dependent aminotransferase	A0A1X6WGT4	Pacmanvirus	6.2e-14	25.0
WP_141155971.1\|2217607_2218963_-	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	1.1e-57	37.1
WP_083236361.1\|2219267_2219873_+	helix-turn-helix transcriptional regulator	A0A2H4J122	uncultured_Caudovirales_phage	5.5e-60	61.6
WP_141155972.1\|2219859_2220738_+	queuosine precursor transporter	A0A2H4J2N7	uncultured_Caudovirales_phage	8.7e-107	68.9
WP_141155973.1\|2220792_2221491_-	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	6.1e-95	73.0

DBSCAN-SWA_3

2751999 : 2811294

Tupanvirus(16.67%)

protease,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_027605972.1\|2751999_2752500_-\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
WP_115485645.1\|2752673_2753561_+	acyltransferase	NA	NA	NA	NA
WP_115485644.1\|2753557_2754130_-	DUF2780 domain-containing protein	NA	NA	NA	NA
WP_141156174.1\|2754621_2755596_+	hypothetical protein	NA	NA	NA	NA
WP_141156175.1\|2755596_2755950_+	hypothetical protein	NA	NA	NA	NA
WP_005792122.1\|2755996_2757196_-	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	1.4e-11	29.3
WP_065925438.1\|2757332_2758190_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_027605977.1\|2758200_2758833_-	sarcosine oxidase subunit gamma family protein	NA	NA	NA	NA
WP_141156176.1\|2758911_2761929_-	sarcosine oxidase subunit alpha family protein	NA	NA	NA	NA
WP_027605979.1\|2761925_2762228_-	sarcosine oxidase subunit delta	NA	NA	NA	NA
WP_010207084.1\|2762243_2763494_-	sarcosine oxidase subunit beta	NA	NA	NA	NA
WP_034101149.1\|2763516_2764770_-	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	6.6e-100	52.5
WP_141156177.1\|2764945_2765674_-	conjugal transfer protein TraX	NA	NA	NA	NA
WP_065938192.1\|2765764_2766805_+	low specificity L-threonine aldolase	NA	NA	NA	NA
WP_115485636.1\|2766988_2767189_+	hypothetical protein	NA	NA	NA	NA
WP_027605983.1\|2767272_2768373_-	glycine-betaine demethylase subunit GbcB	NA	NA	NA	NA
WP_027605984.1\|2768654_2769950_+	glycine-betaine demethylase subunit GbcA	NA	NA	NA	NA
WP_027605985.1\|2770742_2771237_+	type II secretion system protein	NA	NA	NA	NA
WP_027605986.1\|2771211_2771592_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_141157840.1\|2771617_2772085_+	type II secretion system protein	NA	NA	NA	NA
WP_141156178.1\|2772159_2773704_+	chitin-binding protein	A0A0M3WNH3	Perigonia_lusca_single_nucleopolyhedrovirus	4.6e-18	25.2
WP_141156179.1\|2773916_2774348_+	type II secretion system major pseudopilin GspG	NA	NA	NA	NA
WP_141156180.1\|2774349_2774814_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA
WP_141156181.1\|2774810_2775995_+	type II secretion system F family protein	NA	NA	NA	NA
WP_141156182.1\|2775999_2777637_+	Flp pilus assembly complex ATPase component TadA	NA	NA	NA	NA
WP_141157841.1\|2777641_2778343_+	hypothetical protein	NA	NA	NA	NA
WP_168209000.1\|2778339_2778897_+	hypothetical protein	NA	NA	NA	NA
WP_141156183.1\|2778903_2779440_+	hypothetical protein	NA	NA	NA	NA
WP_141156184.1\|2779436_2779928_+	hypothetical protein	NA	NA	NA	NA
WP_141156185.1\|2779946_2781872_+	general secretion pathway protein GspD	NA	NA	NA	NA
WP_141156186.1\|2781890_2782661_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
WP_141156187.1\|2782671_2783892_-	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_141156188.1\|2783891_2785835_-	dimethylglycine demethylation protein DgcB	NA	NA	NA	NA
WP_065925458.1\|2785991_2788052_-	dimethylglycine demethylation protein DgcA	NA	NA	NA	NA
WP_027606002.1\|2788067_2788598_-	hypothetical protein	NA	NA	NA	NA
WP_010207105.1\|2788650_2789628_-	membrane dipeptidase	NA	NA	NA	NA
WP_027606004.1\|2789849_2790251_+	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_141156189.1\|2790292_2790709_+	DUF3010 family protein	NA	NA	NA	NA
WP_141156190.1\|2790832_2792011_-	hypothetical protein	NA	NA	NA	NA
WP_027606007.1\|2792079_2793024_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_092490303.1\|2793217_2794162_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_141156191.1\|2794236_2795124_+	3-keto-5-aminohexanoate cleavage protein	NA	NA	NA	NA
WP_141156192.1\|2795194_2796160_+	L-carnitine dehydrogenase	NA	NA	NA	NA
WP_027606011.1\|2796173_2796650_+	4-hydroxybenzoyl-CoA thioesterase	NA	NA	NA	NA
WP_141156193.1\|2796659_2797820_+	gamma-butyrobetaine dioxygenase	NA	NA	NA	NA
WP_027606014.1\|2798066_2798330_+	hypothetical protein	NA	NA	NA	NA
WP_065938176.1\|2798373_2799477_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_141156194.1\|2800031_2801408_-	L-serine ammonia-lyase	NA	NA	NA	NA
WP_027606017.1\|2801823_2802771_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_016972877.1\|2802840_2803686_+\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_115485618.1\|2803682_2804861_+\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	5.9e-26	37.6
WP_027606019.1\|2804992_2806984_-	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	1.4e-19	28.7
WP_053128113.1\|2807317_2807911_+	transcriptional regulator BetI	NA	NA	NA	NA
WP_027606021.1\|2808021_2809494_+	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_027606022.1\|2809590_2811294_+\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	1.5e-51	30.3

DBSCAN-SWA_4

4777666 : 4782623

uncultured_Mediterranean_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_027604459.1\|4777666_4778416_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.8e-65	51.4
WP_003172303.1\|4778415_4779093_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.4e-43	50.0
WP_065948790.1\|4779300_4780137_+	peptidoglycan DD-metalloendopeptidase family protein	A0A0S2SXL7	Bacillus_phage	8.2e-06	33.3
WP_025855149.1\|4780242_4781247_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	1.3e-34	36.2
WP_002554837.1\|4781457_4781667_-	cold-shock protein	Q9AZD3	Lactococcus_phage	2.2e-16	66.7
WP_003172320.1\|4782056_4782623_+	dCTP deaminase	S5VM63	Pseudomonas_phage	6.2e-74	73.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage