CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP041171	Salmonella enterica subsp. enterica serovar Thompson strain SH11G0791 chromosome, complete genome	3 crisprs	PD-DExK,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	0	24	6	0
NZ_CP041172	Salmonella enterica subsp. enterica serovar Thompson strain SH11G0791 plasmid pSH11G0791, complete sequence	0 crisprs	DEDDh	0	0	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP041171_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041171_1

89785-89879

Unclear

Consensus_repeat	Method
ACCGGGTCTACTGGCTCAGGGTCTAC	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NZ_CP041171_1

>merge|NZ_CP041171|1|89785-89879|CRISPRCasFinder
ACCGGGTCTACTGGCTCAGGGTCTACTGGATCAGGGTCCACCGGATCGGGAATAATAGGGTCAGGGATAACCGGGTCTACTGGATCAGGGTCTAC

>NZ_CP041171|1|1|89785-89879|CRISPRCasFinder
ACCGGGTCTACTGGCTCAGGGTCTAC	TGGATCAGGGTCCACCGGATCGGGAATAATAGGGTCAGGGATA
ACCGGGTCTACTGGATCAGGGTCTAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041171.1\|WP_001278062.1\|87327_88185_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|226233
NZ_CP041171.1\|WP_000280481.1\|105589_107701_-\|bifunctional-GTP-diphosphokinase/guanosine-3',5'-bis-pyrophosphate-3'-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236843
NZ_CP041171.1\|WP_017466071.1\|102808_104890_-\|ATP-dependent-DNA-helicase-RecG	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|236794
NZ_CP041171.1\|WP_001541135.1\|87161_87275_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041171.1\|WP_000115428.1\|99948_101340_-\|xanthine/proton-symporter-XanP	unknown	unknown	gnl\|CDD\|273276
NZ_CP041171.1\|WP_001521985.1\|88195_88660_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041171.1\|WP_017466069.1\|95697_98016_+\|alpha-xylosidase	unknown	unknown	gnl\|CDD\|236731
NZ_CP041171.1\|WP_000135058.1\|107719_107995_-\|DNA-directed-RNA-polymerase-subunit-omega	unknown	unknown	gnl\|CDD\|188073
NZ_CP041171.1\|WP_000392694.1\|81199_81895_+\|MgtC-family-protein	unknown	unknown	gnl\|CDD\|185283
NZ_CP041171.1\|WP_017465918.1\|91681_92299_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225360
NZ_CP041171.1\|WP_000535970.1\|79791_80694_-\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|273359
NZ_CP041171.1\|WP_017466070.1\|98118_99828_-\|AsmA-family-protein	unknown	unknown	gnl\|CDD\|282957
NZ_CP041171.1\|WP_001065324.1\|85155_85635_+\|membrane-protein	unknown	unknown	unknown
NZ_CP041171.1\|WP_000131288.1\|82114_84841_+\|magnesium-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|237914
NZ_CP041171.1\|WP_000462250.1\|101567_102773_+\|sodium/glutamate-symporter	unknown	unknown	gnl\|CDD\|129314
NZ_CP041171.1\|WP_000749540.1\|78807_79749_+\|Rpn-family-recombination-promoting-nuclease/putative-transposase	unknown	unknown	gnl\|CDD\|182167
NZ_CP041171.1\|WP_001082117.1\|84862_84955_+\|protein-MgtR	unknown	unknown	unknown
NZ_CP041171.1\|WP_001068436.1\|104895_105585_-\|tRNA-(guanosine(18)-2'-O)-methyltransferase-TrmH	unknown	unknown	gnl\|CDD\|236837
NZ_CP041171.1\|WP_000106461.1\|85863_86544_-\|isochorismatase-family-protein	unknown	unknown	gnl\|CDD\|238494
NZ_CP041171.1\|WP_017466068.1\|94303_95686_+\|glycoside-pentoside-hexuronide-family-transporter	unknown	unknown	gnl\|CDD\|183145

Protein	Function_ID	Function_description	E-value
NZ_CP041171.1\|WP_001278062.1\|87327_88185_+\|transcriptional-regulator	gnl\|CDD\|226233	COG3710, CadC, DNA-binding winged-HTH domains [Transcription].	6.25098e-40
NZ_CP041171.1\|WP_000280481.1\|105589_107701_-\|bifunctional-GTP-diphosphokinase/guanosine-3',5'-bis-pyrophosphate-3'-pyrophosphohydrolase	gnl\|CDD\|236843	PRK11092, PRK11092, bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase.	0
NZ_CP041171.1\|WP_000115428.1\|99948_101340_-\|xanthine/proton-symporter-XanP	gnl\|CDD\|273276	TIGR00801, Uric_acid_permease, uracil-xanthine permease. The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40) Most of the functionally characterized members of the NCS2 family are transporters specific for nucleobases including both purines and pyrimidines. However, two closely related rat members of the family, SVCT1 and SVCT2, localized to different tissues of the body, cotransport L-ascorbate and Na+ with a high degree of specificity and high affinity for the vitamin. The NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39). [Transport and binding proteins, Nucleosides, purines and pyrimidines].	2.19228e-145
NZ_CP041171.1\|WP_000106461.1\|85863_86544_-\|isochorismatase-family-protein	gnl\|CDD\|238494	cd01012, YcaC_related, YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.	3.05871e-58
NZ_CP041171.1\|WP_017466069.1\|95697_98016_+\|alpha-xylosidase	gnl\|CDD\|236731	PRK10658, PRK10658, putative alpha-glucosidase; Provisional.	0
NZ_CP041171.1\|WP_000392694.1\|81199_81895_+\|MgtC-family-protein	gnl\|CDD\|185283	PRK15385, PRK15385, MgtC family protein.	6.81515e-155
NZ_CP041171.1\|WP_017465918.1\|91681_92299_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225360	COG2771, CsgD, DNA-binding HTH domain-containing proteins [Transcription].	0.00142104
NZ_CP041171.1\|WP_000535970.1\|79791_80694_-\|EamA-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	1.62239e-50
NZ_CP041171.1\|WP_017466070.1\|98118_99828_-\|AsmA-family-protein	gnl\|CDD\|282957	pfam05170, AsmA, AsmA family. The AsmA gene, whose product is involved in the assembly of outer membrane proteins in Escherichia coli. AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant. AsmA may have a role in LPS biogenesis.	9.11295e-22
NZ_CP041171.1\|WP_000462250.1\|101567_102773_+\|sodium/glutamate-symporter	gnl\|CDD\|129314	TIGR00210, Sodium/glutamate_symport_carrier_protein, sodium--glutamate symport carrier (gltS). [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP041171.1\|WP_000131288.1\|82114_84841_+\|magnesium-translocating-P-type-ATPase	gnl\|CDD\|237914	PRK15122, PRK15122, magnesium-transporting ATPase; Provisional.	0
NZ_CP041171.1\|WP_000749540.1\|78807_79749_+\|Rpn-family-recombination-promoting-nuclease/putative-transposase	gnl\|CDD\|182167	PRK09956, PRK09956, ISNCY family transposase.	1.67877e-146
NZ_CP041171.1\|WP_017466071.1\|102808_104890_-\|ATP-dependent-DNA-helicase-RecG	gnl\|CDD\|236794	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional.	0
NZ_CP041171.1\|WP_001068436.1\|104895_105585_-\|tRNA-(guanosine(18)-2'-O)-methyltransferase-TrmH	gnl\|CDD\|236837	PRK11081, PRK11081, tRNA guanosine-2'-O-methyltransferase; Provisional.	2.80076e-177
NZ_CP041171.1\|WP_000135058.1\|107719_107995_-\|DNA-directed-RNA-polymerase-subunit-omega	gnl\|CDD\|188073	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit. This small component of highly purified E. coli RNA polymerase is not required for transcription, but acts in assembly and is present in stochiometric amounts. The trusted cutoff excludes archaeal homologs but captures some organellar sequences. [Transcription, DNA-dependent RNA polymerase].	4.81124e-23
NZ_CP041171.1\|WP_017466068.1\|94303_95686_+\|glycoside-pentoside-hexuronide-family-transporter	gnl\|CDD\|183145	PRK11462, PRK11462, putative transporter; Provisional.	0

>NZ_CP041171.1|WP_001521985.1|88195_88660_+|hypothetical-protein
MLACLTLLFLGVGLGHLFHLYTEKNRDPEKCTAPVIVFYNNTQANLTLDFMYSLKKRTGVVSISGTYYVDNKMSGVIRRDVSYVWSENKDSTHFISTDINKVTRDETLSDAVIETVLPDFYVYPGKSISYTILTQGHRGFMFTIGKRPIFFCTH
>NZ_CP041171.1|WP_001278062.1|87327_88185_+|transcriptional-regulator
MSCYAATASDYTQWCLLTLSNYVMFWHGNNAMLWIINDNIEFNPEMNRLASLSRPDLNIILTTPASRCLRLLLENAPSVVSQQTFFQKVWEEDGMVVSANTLYQNISIIRRGLRTVGENEDTLIITVPRRGFQIEPGVSLMTIRKDFAQAIEKKGETPPRMSGRWFKHYVPVLWMTGTFAVGILLGTISWQTVPDKDFYDRYTLVETTQGCHFFSRNEDIESGSRFASYKSMILKTGMDCQKYPWVYFPSSSRTPAVTALICQQPYKTRGDTGCVTLFFRGVTHG
>NZ_CP041171.1|WP_001541135.1|87161_87275_+|hypothetical-protein
MIFSPQYKTGDLTNKKTKRTFTPESAIMRKAVSTLTC
>NZ_CP041171.1|WP_000106461.1|85863_86544_-|isochorismatase-family-protein
MSTPANFNGQRPAIDANDAVMLLIDHQSGLFQTVGDMPMPELRARAAALAKIATLCNMPVITTASVPQGPNGPLIPEIHANAPHAQYVARKGEINAWDNADFVQAVKATGRKTLIIAGTITSVCMAFPAISAVAEGYKVFAVIDASGTYSKMAQEITMARVVQAGVVPMDTAAVASELQRTWNREDAAEWADVYTKIFPAYQLLIESYTKAQEVVKNNELLDSQRA
>NZ_CP041171.1|WP_001065324.1|85155_85635_+|membrane-protein
MNNRRGLTAVLATLITFSLSATPVLANPGNGNGGGHGNNAANQGNNGNGHKGNAGQKTEHRKNGGKPDHVESDISYAVARQLAVNLGLTGYQSLPPGIAKNLARGKPLPPGIAKKTVPASMLGQLPYYPGYEWKIVGDNLVLIALSTAVVTAIINGVFD
>NZ_CP041171.1|WP_001082117.1|84862_84955_+|protein-MgtR
MNRSPDKIIALIFLLISLLVLCLALWQIVF
>NZ_CP041171.1|WP_000131288.1|82114_84841_+|magnesium-translocating-P-type-ATPase
MTDMNIENRKLNRPASENDKQHKKVFPIEAEAFHSPEETLARLNSHRQGLTIEEASERLKVYGRNEVAHEQVPPALIQLLQAFNNPFIYVLMALAGVSFITDYWLPLRRGEETDLTGVLIILTMVSLSGLLRFWQEFRTNRAAQALKKMVRTTATVLRRGPGNIGAVQEEIPIEELVPGDVVFLAAGDLVPADVRLLASRDLFISQSILSGESLPVEKYDVMADVAGKDSEQLPDKDKSLLDLGNICLMGTNVTSGRAQAVVVATGSRTWFGSLAKSIVGTRTQTAFDRGVNSVSWLLIRFMLIMVPVVLLINGFSKGDWVEASLFALAVAVGLTPEMLPMIVSSNLAKGAIAMSRRKVIVKRLNAIQNFGAMDVLCTDKTGTLTQDNIFLEHHLDVSGVKSSRVLMLAWLNSSSQSGARNVMDRAILRFGEGRIAPSTKARFIKRDELPFDFVRRRVSVLVEDAQHGDRCLICKGAVEEMMMVATHLREGDRVVALTETRRELLLAKTEDYNAQGFRVLLIATRKLDGSGNNPTLSVEDETELTIEGMLTFLDPPKESAGKAIAALRDNGVAVKVLTGDNPVVTARICLEVGIDTHDILTGTQVEAMSDAELASEVEKRAVFARLTPLQKTRILQALQKNGHTVGFLGDGINDAPALRDADVGISVDSAADIAKESSDIILLEKDLMVLEEGVIKGRETFGNIIKYLNMTASSNFGNVFSVLVASAFIPFLPMLAIHLLIQNLMYDISQLSLPWDKMDKEFLRKPRKWDAKNIGRFMLWIGPTSSIFDITTFALMWYVFAANNVEAQALFQSGWFIEGLLSQTLVVHMLRTQKIPFIQSRATLPVLLTTGLIMAIGIYIPFSPLGAMVGLEPLPLSYFPWLVATLLSYCLVAQGMKRFYIKRFGQWF
>NZ_CP041171.1|WP_000392694.1|81199_81895_+|MgtC-family-protein
MEERMLMFPYILNLLAAMLLGALIGAERQWRQRMAGLRTNALVATGAAVFILSSMTTSPDSPGRIAAQIVSGIGFLGAGVIMREGMNVRGLNTAATLWCSAGIGVLCGLGQFKNALAATIIILCANILLREAAQRINQLPISAEGEKRYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELVGHADYRKTRELIISRIGDNDNITAIHWSIDSQ
>NZ_CP041171.1|WP_000535970.1|79791_80694_-|EamA-family-transporter
MGSTRKGMLNVLIAAVLWGSSGVCAQYIMEQSRMSSQFLTMIRLLFAGLILVTFSFMHGDKIFSILKNRKDALSLLIFSVVGALTVQLTFLLTIEKSNAATATVLQFLSPTIIVAWFALARRTRPGILVLTAILTSLIGTFLLVTHGNPTSLSISSGALFWGIASAFAAAFYTTWPSRLIAQYGTLPVVGWSMSFGGLILLPFYAKEGTHFAVSGSLILAFFYLVVIGTSLTFSLYLKGAQLIGGPKASILSCAEPLSSALLSLLLLGISFTLPDWLGTLLILSSVILISLDSRRRARAA
>NZ_CP041171.1|WP_000749540.1|78807_79749_+|Rpn-family-recombination-promoting-nuclease/putative-transposase
MKKSPTSTPHDAVFKTFLRHPDTARDFLNIHLPHSLRIRCDLTTLKLAPDSFIEKNLRAFYSDVLWSLKTCEGDGYIYVVIEHQSTPDAHMAFRLMRYATAAMQRHLDAGHKTLPLVIPMLFYHGAKSPYPFSLCWLDEFDDPALARQLYATAFPLVDITVVPDNEIMQHRRIAMLELVQKHIRQRDLMGLVERLAVLLITGNANDSQLKALFNYLLIQHGSTPRFGKFIREVARRVPQHKERLMTIVDRIRESGRRKGKREGVQQGIQQGIHQGKQEEALRIAHTMLEQGIEREMVLMITGLSDEEIKAKRH
>NZ_CP041171.1|WP_017465918.1|91681_92299_-|helix-turn-helix-transcriptional-regulator
MMRKPSQIVHCISCDLSCQLFPDSAVRVQYCHNAAFSIWPDGNAFLKKGFIEKLLLDRHNHLSNGFIFVDFSFPNLRRFTDLQWADSLADSGMHIVLISDRSLTPLANYWILKSNKIQGIIYSDDDDIVQQQKMHRLFTGRLANSKRGRTLNYTEFILLKRFVSGISIQQIVNIDNIDIKKLYVHKLRLENKLGHSIHKIISNIL
>NZ_CP041171.1|WP_017466068.1|94303_95686_+|glycoside-pentoside-hexuronide-family-transporter
MKSEILSVKEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLLARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSLNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVKLIGGENKALGFQGGIAALSVVAFLMLAFCFFTTKERVEAPATHTSMREDLRDIWHNDQWRIVGLLTILNILAVCVRGGAMMYYVTWILGKPGVFVAFLTTYCVGNLIGSALAKPLTDWKCKVSVFWWTNALLAVISVAMFFVPMHATIAMFIFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLALGGALIGWMLAGGGYDAAAKTQNSATISIIIALFTIVPAICYLLSAAIAKRYYTLKSPFLKTILEQLAQGAHRNEQEFTHKELQN
>NZ_CP041171.1|WP_017466069.1|95697_98016_+|alpha-xylosidase
MKISDGNWLIQPGLNLIHPVQVFDVEQHGNEMVVYAAPRDVRERTWQLDTPLFTLRFFSPQEGVIGVRMEHFQGALDNGPHYPLNVLQDINVEMQNNAEFAELKSGSLSVRVTKGELWSLDFLRNGVRITGSQLKNNGYVQDTNSGRNYMFERLDLGVGETVYGLGERFTALVRNGQTVETWNRDGGTSTEQSYKNIPFYITNRGYGVLVNHPQCVSFEIGSEKVSKVQFSVESEYLEYFVIDGPTPKDVLNRYTQFTGRPALPPAWSFGLWLTTSFTTNYDEATVNSFIDGMAERNLPLHVFHFDCFWMKAFQWCDFEWDPVTFPDPKGMIRRLKAKGLKVCVWINPYIGQKSPVFQELKEKGYLLKRPDGSLWQWDKWQPGLAIYDFTNPQACEWYADKLKGLVEMGVDCFKTDFGERIPTDVQWFDGSDPQKMHNHYAYIYNELVWNVLKETVGVEEAVLFARSASVGAQQFPVHWGGDCYANYESMAESLRGGLSIGLSGFGFWSHDIGGFENTAPAHVYKRWCAFGLLSSHSRLHGSKSYRVPWAYDDESCDVVRFFTEQKCRMMPYLYREAARANEAGTPMMRAMMLEFPDDPACDYLDRQYMLGDAVMVAPVFSEAGDVEFYLPEGRWTHLWRNDEVQGSRWHKQQHDFLSLPVYVRDNTLLALGNNSQKPDYAWHEGTAFQLFHLDDGCEAVCEVPATDGSTIFTLQAKRTGSTITVSGEGEARNWTLCLRNITQISGTKCGSYAESELGVVITPQGNEVVITL
>NZ_CP041171.1|WP_017466070.1|98118_99828_-|AsmA-family-protein
MKLIGRLLLYVLIACLVVIFGFYFLLQTRWGADHISNWVSENSGYHLTFDVMDHRFSAPSHLLLENVTFGRDGQPATLVAKTVDIGLSIRQLTAPLHVDTILLQDGTLNISVQTAPFPFEADRLQLRNMALNSPGSEWRLSAQRVNGGVMPWRPEAGRVLGNKAQIQLSAGSLTLNDVPATNVLIEGSIDHNQVMLNTVGADMARGALTGVARRNADGSWVVENLRLNDIRLQSDKSLSEFFAPLTTVPSLQIGRLEVTDSSLQGPGWAVTDLDLSLRNLTLRKEDWQSQEGKLSMNASEFIYGSLHLLDPILNAEFSPQGVALRQFTTRWEGGMVRTSGAWLREGKALILDDTAIAGLEYTLPENWKQLWMKPLPDWLNSLTLKKFSASRNLVIDIDPAFPWQITALDGYGANLELVQHHQWGVWSGNATLNAAAATFNRVDVRRPSLSLTANASTVNISDLSAFTGKGILEATASVSQLPQRQTQISLNGRGVPMDVLQQWGWPALPIAGDGNIQLTASGNIQADAPLKPTVNGQLHAVNAQKQQITQTMQAGVVSGGEVTSTEPAL
>NZ_CP041171.1|WP_000115428.1|99948_101340_-|xanthine/proton-symporter-XanP
MSVNAIEPADAQPVAQTQNSELIYRLEDRPPLPQTLFAACQHLLAMFVAVITPALLICQALGLPAQDTQHIISMSLFASGVASIIQIKAWGPVGSGLLSIQGTSFNFVAPLIMGGTALKTGGADVPTMMAALFGTLMLASCTEMVLSRILHLARRIITPLVSGVVVMIIGLSLIQVGLTSIGGGYAAMSDNTFGAPKNLLLAGVVLAIIILLNRQRNPYLRVASLVIAMAAGYLLAWFMGMLPENNAPVSQDILMVPTPLYYGLGIDWNLLLPLMLVFMITSLETIGDITATSDVSEQPVSGPLYMKRLKGGVLANGLNSFVSAVFNTFPNSCFGQNNGVIQLTGVASRYVGFVVALMLIVLGLFPAVSGFVQHIPEPVLGGATLVMFGTIAASGVRIVSREPLNRRAILIIALSLAVGLGVSQQPQILQFAPEWVKNLLSSGIAAGGITAIVLNLILPPEKP
>NZ_CP041171.1|WP_000462250.1|101567_102773_+|sodium/glutamate-symporter
MFELDTLSTLVAATLVLLLGRKLVQSVSLLKKYTIPEPVAGGLLVAVALLVLKKSVGWEVNFDMTLRDPLMLAFFATIGLNANLASLRKGGRVVGVFLVVVVGLLLMQNAIGIGMASLLGLDPLMGLIAGSITLSGGHGTGAAWSKLFVERYGFANATEVAMACATFGLVLGGLIGGPVARYLVKHSTTPDGMPDDQAVPTAFEKPDVGRMITSLVLIETIALIAICLTVGKIVAQLLAGTVLELPVFVCVLFVGVILSNGLALVGFYRVFERAVSVLGNVSLSLFLAMALMSLKLWELASLALPMLAILVVQTIFMALYAIFVTWRMMGKNYDAAVLAAGHCGFGLGATPTAIANMQAITDRFGPSHMAFLVVPMVGAFFIDIVNALVIKLYLMLPIFAQ
>NZ_CP041171.1|WP_017466071.1|102808_104890_-|ATP-dependent-DNA-helicase-RecG
MSGRLLDAVPLNSLTGVGAAQSSKLAKIGLHTVQDLLLHLPLRYEDRTHLYPIGELLPGIYATVEGEVLNCNITFGGRRMMTCQISDGSGILTMRFFNFNAAMKNSLATGRRVLAYGEAKRGKYGAEMIHPEYRLQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQALELLDTCAIAELLPPELAQGMMSLPEALRTLHRPPPTLQLADLETGKHPAQRRLILEELLAHNLSMLALRAGAQRYHAQPLSTNNILKDKLLASLPFKPTSAQARVVAEIERDMALDVPMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEVGWLAGKQKGKARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRHEIIDRVRNACTTEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQAFKQGELQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYKSPLSKTAQKRLQILRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAMIPEIQRIARHIHERYPQQAQALIERWMPETERYSNA
>NZ_CP041171.1|WP_001068436.1|104895_105585_-|tRNA-(guanosine(18)-2'-O)-methyltransferase-TrmH
MNPKRYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAIWPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQEALDLADRDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEDEQQRLLFEGGYPVLAKVAKRKGLPYPRVNQQGEIDADADWWATMQAAG
>NZ_CP041171.1|WP_000280481.1|105589_107701_-|bifunctional-GTP-diphosphokinase/guanosine-3',5'-bis-pyrophosphate-3'-pyrophosphohydrolase
MYLFESLNQLIQTYLPEDQIKRLRQAYLVARDAHEGQTRSSGEPYITHPVAVACILAEMKLDYETLMAALLHDVIEDTPATYQDMEQLFGKSVAELVEGVSKLDKLKFRDKKEAQAENFRKMIMAMVQDIRVILIKLADRTHNMRTLGSLRPDKRRRIARETLEIYSPLAHRLGIHHIKTELEELGFEALYPNRYRVIKEVVKAARGNRKEMIQKILSEIEGRLQEAGIPCRVSGREKHLYSIYCKMVLKEQRFHSIMDIYAFRVIVHDSDTCYRVLGQMHSLYKPRPGRVKDYIAIPKANGYQSLHTSMIGPHGVPVEVQIRTEDMDQMAEMGVAAHWAYKEHGETSTTAQIRAQRWMQSLLELQQSAGSSFEFIESVKSDLFPDEIYVFTPEGRIVELPAGATPVDFAYAVHTDIGHACVGARVDRQPYPLSQPLSSGQTVEIITAPGARPNAAWLNFVVSSKARAKIRQLLKNLKRDDSVSLGRRLLNHALGGSRKLAEIPQENIQRELDRMKLATLDDLLAEIGLGNAMSVVVAKNLQQGEAVVPTVAQSNHGHLPIKGADGVLITFAKCCRPIPGDPIIAHVSPGKGLVIHHESCRNIRGYQKEPEKFMAVEWDKETEQEFITEIKVEMFNHQGALANLTAAINTTTSNIQSLNTEEKDGRVYSTFIRLTARDRVHLANIMRKIRVMPDVIKVTRNRN
>NZ_CP041171.1|WP_000135058.1|107719_107995_-|DNA-directed-RNA-polymerase-subunit-omega
MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQILDVRERQEQQEQEAAELQAVTAIAEGRR

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Crispr_ID: NZ_CP041171_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041171_2

952939-954187

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

20 spacers

cas3,cas8e,cse2gr11,cas7,cas5

The CRISPR arrays of NZ_CP041171_2

>merge|NZ_CP041171|2|952939-954187|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGAATACTATCCTGCAATGCGCTACCACGTTACTGTGTTCCCCGCGCCAGCGGGGATAAACCGTGATAACGCATGGGAGTCCAGATTACAAATTCGTGTTCCCCGCGCCAGCGGGGATAAACCGTGCTGGATACACGCGTTTCAATGGTCAGAGTTGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGCTCTCTAACGACTTCCCCGGAGTACGTAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCTTGTCGGCGTTGCTCACGTGACTATTTCGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTTTATGAGATTGTGAGACAGCTTGATCCTGGTGTTCCCCGCGCCAGCGGGGATAAACCGACCGTTATCTGCTGGTTGATACTTCCCCGAGCGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGCAGAACGCCGCATCGCCGAACTGGACAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGTGCCGGTTTATCTGCTCCAGACCGATCGACTAGTGTTCCCCGCGCCAGCGGGGATAAACCGTCCGCGGTGATAGTATGCGGGGAACTATAGACGTGTTCCCCGCGCCAGCGGGGATAAACCGGGAAACGAAGATGACCTTTATTAGAGATATCCGTGTTCCCCGCGCCAGCGGGGATAAACCGTGCTGAATCTTTGCGAGTGGGATGATGGCACTGTGTTTCCCGCGCCAGCGGGGATAAACCGCCGCTACGATCTATTCGAATCATAGTGGTGCGGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGTGCGCCGGGATATTGCGCCGCGCCGAGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGTCCTTTTATTCTAATGGGTTAGATAGGGTAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGAAAACTGCACCGCCGCTGCCACTGAGTTTGCTGTGTTCCCCGCGCCAGCGGGGATAAACCGAAAACTGCACCGCCGCTGCCACTGAGTTTGCTGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGCAGAATTTACAGGTGTCACTGTTGTCCGGGTGTTCCCCGCGCCAGCGGGGATAAACCGGGCGTGGTGTATATCGGTCTTGATGCGTTGTCGTGTTCCCCGCGCCAGCGGGGATAAACCGGTCACGAGGTCTGACGCGGATGTGATGAGTTAGTGTTCCCCGCGCCAACAAGGATAGCCGT

>NZ_CP041171|2|1|952939-954126|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATACTATCCTGCAATGCGCTACCACGTTACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGATAACGCATGGGAGTCCAGATTACAAATTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCTGGATACACGCGTTTCAATGGTCAGAGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGCTCTCTAACGACTTCCCCGGAGTACGTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTTGTCGGCGTTGCTCACGTGACTATTTCGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTTATGAGATTGTGAGACAGCTTGATCCTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACCGTTATCTGCTGGTTGATACTTCCCCGAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGCAGAACGCCGCATCGCCGAACTGGACAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCCGGTTTATCTGCTCCAGACCGATCGACTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCCGCGGTGATAGTATGCGGGGAACTATAGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGAAACGAAGATGACCTTTATTAGAGATATCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCTGAATCTTTGCGAGTGGGATGATGGCACT
GTGTTTCCCGCGCCAGCGGGGATAAACCG	CCGCTACGATCTATTCGAATCATAGTGGTGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCCTTTTATTCTAATGGGTTAGATAGGGTAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAACTGCACCGCCGCTGCCACTGAGTTTGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAACTGCACCGCCGCTGCCACTGAGTTTGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGCAGAATTTACAGGTGTCACTGTTGTCCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCGTGGTGTATATCGGTCTTGATGCGTTGTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>NZ_CP041171|2|2|952939-954187|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATACTATCCTGCAATGCGCTACCACGTTACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGATAACGCATGGGAGTCCAGATTACAAATTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCTGGATACACGCGTTTCAATGGTCAGAGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGCTCTCTAACGACTTCCCCGGAGTACGTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTTGTCGGCGTTGCTCACGTGACTATTTCGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTTATGAGATTGTGAGACAGCTTGATCCTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACCGTTATCTGCTGGTTGATACTTCCCCGAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGCAGAACGCCGCATCGCCGAACTGGACAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCCGGTTTATCTGCTCCAGACCGATCGACTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCCGCGGTGATAGTATGCGGGGAACTATAGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGAAACGAAGATGACCTTTATTAGAGATATCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCTGAATCTTTGCGAGTGGGATGATGGCACT
GTGTTTCCCGCGCCAGCGGGGATAAACCG	CCGCTACGATCTATTCGAATCATAGTGGTGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCCTTTTATTCTAATGGGTTAGATAGGGTAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAACTGCACCGCCGCTGCCACTGAGTTTGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAACTGCACCGCCGCTGCCACTGAGTTTGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGCAGAATTTACAGGTGTCACTGTTGTCCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCGTGGTGTATATCGGTCTTGATGCGTTGTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCACGAGGTCTGACGCGGATGTGATGAGTTA
GTGTTCCCCGCGCCAACAAGGATAGCCGT

>NZ_CP041171|2|1|952939-954187|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATACTATCCTGCAATGCGCTACCACGTTACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGATAACGCATGGGAGTCCAGATTACAAATTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCTGGATACACGCGTTTCAATGGTCAGAGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGCTCTCTAACGACTTCCCCGGAGTACGTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTTGTCGGCGTTGCTCACGTGACTATTTCGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTTATGAGATTGTGAGACAGCTTGATCCTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACCGTTATCTGCTGGTTGATACTTCCCCGAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGCAGAACGCCGCATCGCCGAACTGGACAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCCGGTTTATCTGCTCCAGACCGATCGACTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCCGCGGTGATAGTATGCGGGGAACTATAGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGAAACGAAGATGACCTTTATTAGAGATATCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCTGAATCTTTGCGAGTGGGATGATGGCACT
GTGTTTCCCGCGCCAGCGGGGATAAACCG	CCGCTACGATCTATTCGAATCATAGTGGTGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCCTTTTATTCTAATGGGTTAGATAGGGTAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAACTGCACCGCCGCTGCCACTGAGTTTGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAACTGCACCGCCGCTGCCACTGAGTTTGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGCAGAATTTACAGGTGTCACTGTTGTCCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCGTGGTGTATATCGGTCTTGATGCGTTGTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCACGAGGTCTGACGCGGATGTGATGAGTTA
GTGTTCCCCGCGCCAACAAGGATAGCCGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041171.1\|WP_000029738.1\|961800_964464_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP041171.1\|WP_000368584.1\|964475_966032_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP041171.1\|WP_017466196.1\|943030_943804_-\|fimbria/pilus-periplasmic-chaperone	unknown	unknown	gnl\|CDD\|185177
NZ_CP041171.1\|WP_017466176.1\|967671_968418_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP041171.1\|WP_017466163.1\|955967_957767_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP041171.1\|WP_000178258.1\|942504_943011_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185178
NZ_CP041171.1\|WP_017466195.1\|941486_942023_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185168
NZ_CP041171.1\|WP_000832396.1\|942019_942490_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185179
NZ_CP041171.1\|WP_077908752.1\|943816_946516_-\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|185176
NZ_CP041171.1\|WP_000210863.1\|948816_950454_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP041171.1\|WP_001199961.1\|951970_952642_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP041171.1\|WP_001290662.1\|957766_959479_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP041171.1\|WP_000210449.1\|947788_948589_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP041171.1\|WP_000117946.1\|966028_966589_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP041171.1\|WP_000039870.1\|959580_960315_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP041171.1\|WP_000036734.1\|950536_951835_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP041171.1\|WP_017466162.1\|946595_947183_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185169
NZ_CP041171.1\|WP_000206416.1\|966602_967661_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP041171.1\|WP_024145767.1\|960402_961356_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP041171.1\|WP_000108313.1\|955170_955533_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264

Protein	Function_ID	Function_description	E-value
NZ_CP041171.1\|WP_000029738.1\|961800_964464_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NZ_CP041171.1\|WP_000368584.1\|964475_966032_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP041171.1\|WP_017466196.1\|943030_943804_-\|fimbria/pilus-periplasmic-chaperone	gnl\|CDD\|185177	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional.	0
NZ_CP041171.1\|WP_017466176.1\|967671_968418_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.2413e-48
NZ_CP041171.1\|WP_017466163.1\|955967_957767_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP041171.1\|WP_000178258.1\|942504_943011_-\|fimbrial-protein	gnl\|CDD\|185178	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional.	1.6337e-105
NZ_CP041171.1\|WP_017466195.1\|941486_942023_-\|fimbrial-protein	gnl\|CDD\|185168	PRK15260, PRK15260, fimbrial protein SteF; Provisional.	2.30226e-121
NZ_CP041171.1\|WP_000832396.1\|942019_942490_-\|fimbrial-protein	gnl\|CDD\|185179	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional.	1.41178e-100
NZ_CP041171.1\|WP_077908752.1\|943816_946516_-\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|185176	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein.	0
NZ_CP041171.1\|WP_000210863.1\|948816_950454_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP041171.1\|WP_001199961.1\|951970_952642_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
NZ_CP041171.1\|WP_001290662.1\|957766_959479_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP041171.1\|WP_000210449.1\|947788_948589_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.52469e-158
NZ_CP041171.1\|WP_000117946.1\|966028_966589_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.53741e-34
NZ_CP041171.1\|WP_000039870.1\|959580_960315_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	7.73232e-139
NZ_CP041171.1\|WP_000036734.1\|950536_951835_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP041171.1\|WP_017466162.1\|946595_947183_-\|fimbrial-protein	gnl\|CDD\|185169	PRK15261, PRK15261, fimbrial protein SteA; Provisional.	5.39196e-99
NZ_CP041171.1\|WP_000206416.1\|966602_967661_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	2.35073e-131
NZ_CP041171.1\|WP_024145767.1\|960402_961356_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP041171.1\|WP_000108313.1\|955170_955533_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58

>NZ_CP041171.1|WP_001199961.1|951970_952642_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP041171.1|WP_000036734.1|950536_951835_+|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP041171.1|WP_000210863.1|948816_950454_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>NZ_CP041171.1|WP_000210449.1|947788_948589_+|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSFPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>NZ_CP041171.1|WP_017466162.1|946595_947183_-|fimbrial-protein
MKSSHFCKLAVTASLVMGIVSGAQAAGSNTAKVTFLGNIVDSPCSVTLDTEDQTVNMGSSIGNGTLSNGKTTINNARTFHIDLEGCTWATEKNMNVVFTTGSGTTAATGATDNLALMKTDGTGAISNVSLAISDAGKNNIKLGDTYTQAFADLDGDTILDEKQSLNFTAWLVGAATGTVGTGEFSSAANVTISYL
>NZ_CP041171.1|WP_077908752.1|943816_946516_-|fimbrial-biogenesis-outer-membrane-usher-protein
MMNNTWKSVLCPIACGVGMLLSVSPYSASGKDIEFNTDFLDVKNRDNVNIAQFSRKGFILPGVYLLQIKINGQTLPQEFPVNWVIPEHDPQGSEVCAEPELVTQLGIKPELAEKLVWITHGERQCLAPDSLKGMDFQADLGHSTLLVNLPQAYMEYSDVDWDPPARWDNGIPGIILDYNINNQLRHDQESGSEEQSISGNGTLGANLGAWRLRADWQASYDHRDDDENTSTLHDQSWSRYYAYRALPTLGAKLTLGESYLQSDVFDSFNYIGASVISDDQMLPPKLRGYAPEIVGIARSNAKVKVSWQGRVLYETQVPAGPFRIQDLNQSVSGTLHVTVEEQNGQTQEFDVNTASVPFLTRPGMVRYKMALGRPQDWDHHPITGTFASAEASWGVTNGWSLYGGAIGESNYQAVALGSGKDLGVVGAVAVDITHSIAHMPQDDGFDGETLQGNSYRISYSRDFDEIDSRLTFAGYRFSEKNFMSMSDYLDAKTYHHLNAGHEKERYTVTYNQNFREQGMSAYFSYSRSTFWDSPDQSNYNLSLSWYFDLGSIKNLSASLNGYRSEYNGDKDDGVYISLSVPWGNDSISYNGTFNGSQHRNQLGYSGHSQNGDNWQLHVGQDEQGAQADGYYSHQGALTDIDLSADYEEGSYRSLGMSLRGGMTLTTQGGALHRGSLAGSTRLLVDTDGIADVPVSGNGSPTSTNIFGKAVIADVGSYSRSLARIDLNKLPEKAEATKSVVQITLTEGAIGYRHFDVVSGEKMMAVFRLADGDFPPFGAEVKNERQQQLGLVADDGNAWLAGVKAGETLKVFWDGAAQCEASLPPTFTPELLANALLLPCKILEGQPPTAPQKSSPLPAQPLIQEHTQTDGQPAAPVATTTQTPPIPLADNHAVNRKDME
>NZ_CP041171.1|WP_017466196.1|943030_943804_-|fimbria/pilus-periplasmic-chaperone
MNKTNHFKRQALIASVLLAAPLVSHSAIVPDRTRVIFNGNENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLPQDRESLFYFNVREIPPKSDKPNTLQLALQTRIKFFYRPVAVARQVDKTHPWQTKLTLTYQGDGVIFDNPTPFYLVISNAGSKENETASGFKNLLIAPREKVTAPIKGASLGSSPVVGYVDDYGGHRLLVFTCSGNTCKVNEEKTRDAEKKANK
>NZ_CP041171.1|WP_000178258.1|942504_943011_-|fimbrial-protein
MTMLTRWKILVLLCGGFVTGTEAAGTKTVQLELHLVVTQPPPCTIGGASVEFGDVLTTKVGDASQTKPVGYSLNCDGRASDYLKLQIQGTTTTISGEQVLQTSVQGLGIRIQQAGNKQLVPVGITDWLNFTLSGSNGPELEAVPVKEPTTQLAGGDFNASATLVVDYQ
>NZ_CP041171.1|WP_000832396.1|942019_942490_-|fimbrial-protein
MKRVLILTLLITQFACADNLTFHGKLINPPACTINNGETLEVSFGSVIIDNIDGVNYLTEIPWTLTCDSSFRDDALTFTLSYLGTATPYSANALTTNVPELGIELQQNGTVFPPGTSLTIDESSLPTLKAVPVKQPGKEPAEGDFEAFATLQVDYQ
>NZ_CP041171.1|WP_017466195.1|941486_942023_-|fimbrial-protein
MNRIFQTAGHLIGGVMLWAVCNTLPAATPNVHYSGKLVAGACNLVVDNDTMATVDFHTIGSDNFDASGQTTPVPFTLSLQDCKTALANGVLVTFQGVEDSTLPGLLALEPSSEASGFAIGVETAAQQPVSINATVGTAFVLKEGITTINLQARLQKYAGEEVMPGEFKGSATVSFEYQ
>NZ_CP041171.1|WP_000108313.1|955170_955533_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>NZ_CP041171.1|WP_017466163.1|955967_957767_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPAPEGKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQATASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLIATLSVNQNITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAEALIGLLRPLTPRLYSIASAQAEVESEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAADGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>NZ_CP041171.1|WP_001290662.1|957766_959479_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIEKLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAELGLVGKAPGRYNVHLGGNRMGTRIPRMYRENITESEILDSVDELVGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NZ_CP041171.1|WP_000039870.1|959580_960315_+|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP041171.1|WP_024145767.1|960402_961356_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKLDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHTYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NZ_CP041171.1|WP_000029738.1|961800_964464_+|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERCVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVVTENLLLFHSRFAFYDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>NZ_CP041171.1|WP_000368584.1|964475_966032_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAETPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFADAKGARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRHYFDDHVFTNPYESSDLERIMTARKKYFTTSAEKQSAKAAKAKKQEAAE
>NZ_CP041171.1|WP_000117946.1|966028_966589_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD
>NZ_CP041171.1|WP_000206416.1|966602_967661_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMKDVLDFICA
>NZ_CP041171.1|WP_017466176.1|967671_968418_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHDLPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYSLAQLQASLQHPVFPLYLGRKSHPLALPLAPQLLDGRAPDVLREAYRWYQDQFNTLKLTLPGLQNECWWEGEHDGLTANKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE

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Crispr_ID: NZ_CP041171_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041171_3

970357-972096

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

28 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP041171_3

>merge|NZ_CP041171|3|970357-972096|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGAGTTTATTACCCCGCCATTTTTCAGTCGTCGCGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGTACGACGTAAACTGCGCGCCCGGACTGATGTGTTCCCCGCGCCAGCGGGGATAAACCGGAGGCTATCGGGACACAGGCAAACGTCGTGGCGTGTTCCCCGCGCCAGCGGGGATAAACCGTTTGGTTGATGCGTCAAACCTCGCTAACTTTGGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGGAATAATAAATGGAGTGCCATTTGTAGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGAGCGATGTTGGCATGGCATTGGTTTACTGTAGTGTTCCCCGCGCCAGCGGGGATAAACCGTAGAGCCGTGTGTTAGCAGATAATCAGTATTAGTGTTCCCCGCGCCAGCGGGGATAAACCGAAGCCGGACCACATTTTTCTTGCCGAACTCACGTGTTCCCCGCGCCAGCGGGGATAAACCGGCTGTTGCCGACGTCGGGCTTAAACACCACTGGTGTTCCCCGCGCCAGCGGGGATAAACCGGACGCTTCACCTGCATCAAATTCTCCTCCAGTGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGGGCAACAATTTTAGAGGGGCTGCATTCGCGTGTTCCCCGCGCCAGCGGGGATAAACCGACTACATAGATAACCAAAAATCCACTGGCAAGCGTGTTCCCCGCGCCAGCGGGGATAAACCGCGCACGCGGGTTGCGTAACGGATATACGACAGCGTGTTCCCCGCGCCAGCGGGGATAAACCGTCGCAGAACAGCTCTGCTTCCTTTGCGGAGACGTGTTCCCCGCGCCAGCGGGGATAAACCGTTGCGCTGTTCTATTGGCGGCAATTCTCTGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGACAGCACAGTTGATTACAGCAAAATTTACGGTGTTCCCCGCGTCAGCGGGGATAAACCGACACGCCAGCCAACAATATTAATTTTGTCGTCGTGTTCCCCGCGCCAGCGGGGATAAACCGCCTTGGCGGCAGCCACCTGAGCAACTGTCGGGGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGCTTCTTAACGAGGAGATTAACAGCGACGTGTGTTCCCCGCGCCAGCGGGGATAAACCGTTAATGCGGTCATTGGTCATGTCTCTAAAAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGACTGTAGTTGCGGGTCAGGTTCCGGAATATCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGATAGGGATCGGTAACTTTGCCATCGATCGGCGTGTTCCCCGCGCCAGCGGGGATAAACCGAACGAATTGAGACTATTAGAGATTATTCGCCTGTGTTCCCCGCGCCAGCGGGGATAAACCGGCAACCCATTAATTAACTAAGCAGTAATAAACGTGTTCCCCGCGCCAGCGGGGATAAACCGCACCCAGCGGGTAAACTGATCAGCAGCAGCACGTGTTCCCCGCGCCAGCGGGGATAAACCGAACCCTCAGAAAATAATCCAGACGTTACCGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGCAGAAACAGAAACCGGATATGAGCCATCCATGTGTTCCCCGCGCCAGCGGGGATAAACCGAGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAAATGTTCCCCGCGCCAACGGGGATAAACAC

>NZ_CP041171|3|2|970357-972035|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGTTTATTACCCCGCCATTTTTCAGTCGTCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGTACGACGTAAACTGCGCGCCCGGACTGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGGCTATCGGGACACAGGCAAACGTCGTGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTGGTTGATGCGTCAAACCTCGCTAACTTTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGGAATAATAAATGGAGTGCCATTTGTAGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGCGATGTTGGCATGGCATTGGTTTACTGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAGAGCCGTGTGTTAGCAGATAATCAGTATTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAGCCGGACCACATTTTTCTTGCCGAACTCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTGTTGCCGACGTCGGGCTTAAACACCACTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACGCTTCACCTGCATCAAATTCTCCTCCAGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGGGCAACAATTTTAGAGGGGCTGCATTCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACTACATAGATAACCAAAAATCCACTGGCAAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCACGCGGGTTGCGTAACGGATATACGACAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGACAGCACAGTTGATTACAGCAAAATTTACG
GTGTTCCCCGCGTCAGCGGGGATAAACCG	ACACGCCAGCCAACAATATTAATTTTGTCGTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGCTTCTTAACGAGGAGATTAACAGCGACGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTAATGCGGTCATTGGTCATGTCTCTAAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGATAGGGATCGGTAACTTTGCCATCGATCGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACGAATTGAGACTATTAGAGATTATTCGCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAACCCATTAATTAACTAAGCAGTAATAAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACCCAGCGGGTAAACTGATCAGCAGCAGCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACCCTCAGAAAATAATCCAGACGTTACCGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAGAAACAGAAACCGGATATGAGCCATCCAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>NZ_CP041171|3|3|970357-972096|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGTTTATTACCCCGCCATTTTTCAGTCGTCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGTACGACGTAAACTGCGCGCCCGGACTGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGGCTATCGGGACACAGGCAAACGTCGTGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTGGTTGATGCGTCAAACCTCGCTAACTTTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGGAATAATAAATGGAGTGCCATTTGTAGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGCGATGTTGGCATGGCATTGGTTTACTGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAGAGCCGTGTGTTAGCAGATAATCAGTATTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAGCCGGACCACATTTTTCTTGCCGAACTCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTGTTGCCGACGTCGGGCTTAAACACCACTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACGCTTCACCTGCATCAAATTCTCCTCCAGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGGGCAACAATTTTAGAGGGGCTGCATTCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACTACATAGATAACCAAAAATCCACTGGCAAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCACGCGGGTTGCGTAACGGATATACGACAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGACAGCACAGTTGATTACAGCAAAATTTACG
GTGTTCCCCGCGTCAGCGGGGATAAACCG	ACACGCCAGCCAACAATATTAATTTTGTCGTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGCTTCTTAACGAGGAGATTAACAGCGACGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTAATGCGGTCATTGGTCATGTCTCTAAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGATAGGGATCGGTAACTTTGCCATCGATCGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACGAATTGAGACTATTAGAGATTATTCGCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAACCCATTAATTAACTAAGCAGTAATAAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACCCAGCGGGTAAACTGATCAGCAGCAGCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACCCTCAGAAAATAATCCAGACGTTACCGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAGAAACAGAAACCGGATATGAGCCATCCAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA
ATGTTCCCCGCGCCAACGGGGATAAACAC

>NZ_CP041171|3|2|970357-972096|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGTTTATTACCCCGCCATTTTTCAGTCGTCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGTACGACGTAAACTGCGCGCCCGGACTGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGGCTATCGGGACACAGGCAAACGTCGTGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTGGTTGATGCGTCAAACCTCGCTAACTTTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGGAATAATAAATGGAGTGCCATTTGTAGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGCGATGTTGGCATGGCATTGGTTTACTGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAGAGCCGTGTGTTAGCAGATAATCAGTATTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAGCCGGACCACATTTTTCTTGCCGAACTCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTGTTGCCGACGTCGGGCTTAAACACCACTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACGCTTCACCTGCATCAAATTCTCCTCCAGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGGGCAACAATTTTAGAGGGGCTGCATTCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACTACATAGATAACCAAAAATCCACTGGCAAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCACGCGGGTTGCGTAACGGATATACGACAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGACAGCACAGTTGATTACAGCAAAATTTACG
GTGTTCCCCGCGTCAGCGGGGATAAACCG	ACACGCCAGCCAACAATATTAATTTTGTCGTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGCTTCTTAACGAGGAGATTAACAGCGACGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTAATGCGGTCATTGGTCATGTCTCTAAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGATAGGGATCGGTAACTTTGCCATCGATCGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACGAATTGAGACTATTAGAGATTATTCGCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAACCCATTAATTAACTAAGCAGTAATAAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACCCAGCGGGTAAACTGATCAGCAGCAGCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACCCTCAGAAAATAATCCAGACGTTACCGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAGAAACAGAAACCGGATATGAGCCATCCAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA
ATGTTCCCCGCGCCAACGGGGATAAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041171.1\|WP_000029738.1\|961800_964464_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP041171.1\|WP_000741649.1\|977251_977962_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP041171.1\|WP_001219245.1\|977961_978441_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP041171.1\|WP_000134246.1\|978437_979487_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP041171.1\|WP_000517480.1\|976921_977233_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP041171.1\|WP_065680865.1\|974325_975765_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP041171.1\|WP_000281486.1\|968399_969050_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_CP041171.1\|WP_000372384.1\|973407_974316_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP041171.1\|WP_000206416.1\|966602_967661_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP041171.1\|WP_001173663.1\|975751_976357_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP041171.1\|WP_000368584.1\|964475_966032_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP041171.1\|WP_017466176.1\|967671_968418_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP041171.1\|WP_017466175.1\|969046_969967_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP041171.1\|WP_001518648.1\|969966_970260_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP041171.1\|WP_000039870.1\|959580_960315_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP041171.1\|WP_000117946.1\|966028_966589_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP041171.1\|WP_024145767.1\|960402_961356_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP041171.1\|WP_017465864.1\|976407_976731_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP041171.1\|WP_000490481.1\|972110_973157_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP041171.1\|WP_001221537.1\|979467_980229_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732

Protein	Function_ID	Function_description	E-value
NZ_CP041171.1\|WP_000029738.1\|961800_964464_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NZ_CP041171.1\|WP_000741649.1\|977251_977962_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.24126e-119
NZ_CP041171.1\|WP_001219245.1\|977961_978441_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	3.20925e-104
NZ_CP041171.1\|WP_000134246.1\|978437_979487_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP041171.1\|WP_000517480.1\|976921_977233_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
NZ_CP041171.1\|WP_065680865.1\|974325_975765_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP041171.1\|WP_000281486.1\|968399_969050_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.11215e-74
NZ_CP041171.1\|WP_000372384.1\|973407_974316_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP041171.1\|WP_000206416.1\|966602_967661_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	2.35073e-131
NZ_CP041171.1\|WP_001173663.1\|975751_976357_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
NZ_CP041171.1\|WP_000368584.1\|964475_966032_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP041171.1\|WP_017466176.1\|967671_968418_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.2413e-48
NZ_CP041171.1\|WP_017466175.1\|969046_969967_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.05302e-156
NZ_CP041171.1\|WP_001518648.1\|969966_970260_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.1867e-62
NZ_CP041171.1\|WP_000039870.1\|959580_960315_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	7.73232e-139
NZ_CP041171.1\|WP_000117946.1\|966028_966589_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.53741e-34
NZ_CP041171.1\|WP_024145767.1\|960402_961356_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP041171.1\|WP_017465864.1\|976407_976731_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	6.60724e-48
NZ_CP041171.1\|WP_000490481.1\|972110_973157_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP041171.1\|WP_001221537.1\|979467_980229_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	7.64916e-147

>NZ_CP041171.1|WP_001518648.1|969966_970260_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGVGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>NZ_CP041171.1|WP_017466175.1|969046_969967_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLINKTGVRTHIPVGSVACIMLEPGTRVSHAAVHLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEMGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPESESLGDSGHRGHG
>NZ_CP041171.1|WP_000281486.1|968399_969050_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGSKERQFLYRREELQGAFRFFVLSQEQPAASAIFDVQTRPFAPTLSAGQTLRFNLRANPTVCKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALTWLARQGEQNGFTLREASVDAYRQQQIRRGKDRQMIQFSSVDYTGVLVINEPALFLQRLAQGFGKSRAFGCGMMMIKPGDDA
>NZ_CP041171.1|WP_017466176.1|967671_968418_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHDLPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYSLAQLQASLQHPVFPLYLGRKSHPLALPLAPQLLDGRAPDVLREAYRWYQDQFNTLKLTLPGLQNECWWEGEHDGLTANKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>NZ_CP041171.1|WP_000206416.1|966602_967661_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMKDVLDFICA
>NZ_CP041171.1|WP_000117946.1|966028_966589_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD
>NZ_CP041171.1|WP_000368584.1|964475_966032_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAETPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFADAKGARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRHYFDDHVFTNPYESSDLERIMTARKKYFTTSAEKQSAKAAKAKKQEAAE
>NZ_CP041171.1|WP_000029738.1|961800_964464_+|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERCVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVVTENLLLFHSRFAFYDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>NZ_CP041171.1|WP_024145767.1|960402_961356_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKLDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHTYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NZ_CP041171.1|WP_000039870.1|959580_960315_+|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP041171.1|WP_000490481.1|972110_973157_-|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NZ_CP041171.1|WP_000372384.1|973407_974316_+|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NZ_CP041171.1|WP_065680865.1|974325_975765_+|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRCHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFNGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NZ_CP041171.1|WP_001173663.1|975751_976357_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>NZ_CP041171.1|WP_017465864.1|976407_976731_+|DUF3561-family-protein
MRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIVLHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>NZ_CP041171.1|WP_000517480.1|976921_977233_+|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>NZ_CP041171.1|WP_000741649.1|977251_977962_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>NZ_CP041171.1|WP_001219245.1|977961_978441_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDEVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NZ_CP041171.1|WP_000134246.1|978437_979487_+|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>NZ_CP041171.1|WP_001221537.1|979467_980229_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQIKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP041171_3	3.4\|970569\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	970569-970600	32	NZ_KU963390	Escherichia coli strain ECO37 plasmid ECO37P2, complete sequence	11380-11411	0	1.0
NZ_CP041171_3	3.4\|970569\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	970569-970600	32	NZ_KU963390	Escherichia coli strain ECO37 plasmid ECO37P2, complete sequence	51216-51247	0	1.0
NZ_CP041171_3	3.4\|970569\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	970569-970600	32	NZ_CP010193	Escherichia coli strain M8 plasmid B, complete genome	13579-13610	0	1.0
NZ_CP041171_2	2.14\|953761\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	953761-953792	32	NZ_CP010173	Escherichia coli strain H8 plasmid A, complete sequence	43964-43995	2	0.938
NZ_CP041171_2	2.14\|953761\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	953761-953792	32	NZ_CP021729	Escherichia coli strain Combat11I9 plasmid pCombat11I9-3, complete sequence	74371-74402	2	0.938
NZ_CP041171_2	2.14\|953761\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	953761-953792	32	NZ_CP046005	Escherichia coli strain 1919D3 plasmid p1919D3-2, complete sequence	16994-17025	2	0.938
NZ_CP041171_2	2.14\|953761\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	953761-953792	32	MG592476	Vibrio phage 1.104.O._10N.286.49.A12, partial genome	53386-53417	2	0.938
NZ_CP041171_2	2.14\|953761\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	953761-953792	32	MG592538	Vibrio phage 1.171.O._10N.261.52.F12, partial genome	52140-52171	2	0.938
NZ_CP041171_2	2.14\|953761\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	953761-953792	32	MG592428	Vibrio phage 1.046.O._10N.286.52.E3, partial genome	57590-57621	2	0.938
NZ_CP041171_2	2.14\|953761\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	953761-953792	32	CP054337	Escherichia coli strain SCU-120 plasmid pSCU-120-2, complete sequence	29797-29828	4	0.875
NZ_CP041171_2	2.14\|953761\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	953761-953792	32	NZ_CP021537	Escherichia coli strain AR_0119 plasmid unitig_3, complete sequence	42949-42980	4	0.875
NZ_CP041171_2	2.14\|953761\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	953761-953792	32	NZ_CP026938	Escherichia coli strain CFS3292 plasmid pCFS3292-3, complete sequence	78817-78848	4	0.875
NZ_CP041171_2	2.14\|953761\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	953761-953792	32	NZ_MH844525	Escherichia coli strain SCEC128 plasmid pSCEC128, complete sequence	28593-28624	4	0.875
NZ_CP041171_2	2.14\|953761\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	953761-953792	32	NZ_MH580301	Escherichia coli strain 1107 plasmid p1107-99K, complete sequence	9058-9089	4	0.875
NZ_CP041171_2	2.14\|953761\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	953761-953792	32	NZ_CP042508	Leclercia adecarboxylata strain E1 plasmid pE1_003, complete sequence	12322-12353	4	0.875
NZ_CP041171_2	2.14\|953761\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	953761-953792	32	NZ_CP040893	Leclercia adecarboxylata strain Z96-1 plasmid pZ96-1_2, complete sequence	56847-56878	4	0.875
NZ_CP041171_3	3.4\|970569\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	970569-970600	32	NC_011148	Salmonella enterica subsp. enterica serovar Agona str. SL483 plasmid, complete sequence	16491-16522	4	0.875
NZ_CP041171_3	3.6\|970691\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	970691-970722	32	NZ_CP041251	Raoultella electrica strain DSM 102253 plasmid unnamed4, complete sequence	4814-4845	4	0.875
NZ_CP041171_3	3.10\|970935\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	970935-970966	32	NC_021559	Prochlorococcus phage P-SSM3 genomic sequence	102367-102398	5	0.844
NZ_CP041171_3	3.27\|971975\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	971975-972006	32	NZ_CP022304	Thalassococcus sp. S3 plasmid pS3A, complete sequence	1984-2015	5	0.844
NZ_CP041171_3	3.4\|970569\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	970569-970600	32	NC_017903	Escherichia coli Xuzhou21 plasmid pO157_Sal, complete sequence	7494-7525	6	0.812
NZ_CP041171_3	3.10\|970935\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	970935-970966	32	MN694803	Marine virus AFVG_250M814, complete genome	36099-36130	6	0.812
NZ_CP041171_3	3.27\|971975\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	971975-972006	32	NZ_CP023072	Sinorhizobium fredii CCBAU 83666 plasmid pSF83666a, complete sequence	328890-328921	6	0.812
NZ_CP041171_2	2.8\|953395\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	953395-953426	32	KX657793	Mycobacterium phage DarthPhader, complete genome	27141-27172	7	0.781
NZ_CP041171_2	2.9\|953456\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	953456-953487	32	NZ_CP006990	Rhizobium sp. IE4771 plasmid pRetIE4771d, complete sequence	478474-478505	7	0.781
NZ_CP041171_2	2.9\|953456\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	953456-953487	32	NZ_CP013556	Rhizobium phaseoli strain N931 plasmid pRphaN931d, complete sequence	716796-716827	7	0.781
NZ_CP041171_2	2.9\|953456\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	953456-953487	32	NZ_CP020911	Rhizobium etli strain NXC12 plasmid pRetNXC12e, complete sequence	633092-633123	7	0.781
NZ_CP041171_2	2.9\|953456\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	953456-953487	32	NC_021911	Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1f, complete sequence	493788-493819	7	0.781
NZ_CP041171_2	2.9\|953456\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	953456-953487	32	NZ_CP013567	Rhizobium phaseoli strain N831 plasmid pRphaN831d, complete sequence	716796-716827	7	0.781
NZ_CP041171_2	2.9\|953456\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	953456-953487	32	NZ_CP021127	Rhizobium sp. Kim5 plasmid pRetKim5c, complete sequence	443317-443348	7	0.781
NZ_CP041171_2	2.14\|953761\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	953761-953792	32	NC_017385	Ketogulonicigenium vulgare WSH-001 plasmid 2, complete sequence	198251-198282	7	0.781
NZ_CP041171_2	2.14\|953761\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	953761-953792	32	NZ_CP012910	Ketogulonicigenium vulgare strain Hbe602 plasmid 2, complete sequence	46733-46764	7	0.781
NZ_CP041171_2	2.14\|953761\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	953761-953792	32	NC_014626	Ketogulonicigenium vulgare Y25 plasmid pYP12, complete sequence	6403-6434	7	0.781
NZ_CP041171_2	2.19\|954066\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	954066-954097	32	MF495478	Aeromonas salmonicida plasmid pS121-1b, complete sequence	117450-117481	7	0.781
NZ_CP041171_2	2.19\|954066\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	954066-954097	32	NZ_CP038450	Aeromonas media strain R50-22 plasmid pAeme6, complete sequence	31198-31229	7	0.781
NZ_CP041171_2	2.19\|954066\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	954066-954097	32	NZ_CP022170	Aeromonas salmonicida strain S121 plasmid pS121-1a, complete sequence	125043-125074	7	0.781
NZ_CP041171_3	3.18\|971425\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	971425-971456	32	MH651182	Gordonia phage Neville, complete genome	14047-14078	7	0.781
NZ_CP041171_2	2.6\|953273\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	953273-953304	32	NZ_CP023712	Rhodococcus ruber strain YC-YT1 plasmid unnamed1, complete sequence	72861-72892	8	0.75
NZ_CP041171_2	2.7\|953334\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	953334-953365	32	MN693945	Marine virus AFVG_250M952, complete genome	30837-30868	8	0.75
NZ_CP041171_2	2.7\|953334\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	953334-953365	32	MT773554	Myoviridae sp. isolate BML_2 genomic sequence	32798-32829	8	0.75
NZ_CP041171_2	2.15\|953822\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	953822-953853	32	MK448563	Streptococcus satellite phage Javan601, complete genome	3004-3035	8	0.75
NZ_CP041171_2	2.15\|953822\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	953822-953853	32	MK448565	Streptococcus satellite phage Javan603, complete genome	3286-3317	8	0.75
NZ_CP041171_2	2.15\|953822\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	953822-953853	32	MK448571	Streptococcus satellite phage Javan609, complete genome	3004-3035	8	0.75
NZ_CP041171_2	2.15\|953822\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	953822-953853	32	MK448575	Streptococcus satellite phage Javan612, complete genome	3004-3035	8	0.75
NZ_CP041171_2	2.15\|953822\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	953822-953853	32	MK448567	Streptococcus satellite phage Javan605, complete genome	3004-3035	8	0.75
NZ_CP041171_2	2.15\|953822\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	953822-953853	32	MK448574	Streptococcus satellite phage Javan611, complete genome	2668-2699	8	0.75
NZ_CP041171_2	2.15\|953822\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	953822-953853	32	MK448578	Streptococcus satellite phage Javan615, complete genome	2609-2640	8	0.75
NZ_CP041171_2	2.15\|953822\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	953822-953853	32	MK448577	Streptococcus satellite phage Javan614, complete genome	2586-2617	8	0.75
NZ_CP041171_2	2.15\|953822\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	953822-953853	32	MK448573	Streptococcus satellite phage Javan610, complete genome	3036-3067	8	0.75
NZ_CP041171_2	2.15\|953822\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	953822-953853	32	MK448568	Streptococcus satellite phage Javan606, complete genome	3004-3035	8	0.75
NZ_CP041171_2	2.15\|953822\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	953822-953853	32	MK448570	Streptococcus satellite phage Javan608, complete genome	3036-3067	8	0.75
NZ_CP041171_2	2.15\|953822\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	953822-953853	32	MK448564	Streptococcus satellite phage Javan602, complete genome	3286-3317	8	0.75
NZ_CP041171_2	2.15\|953822\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	953822-953853	32	MK448566	Streptococcus satellite phage Javan604, complete genome	3004-3035	8	0.75
NZ_CP041171_2	2.16\|953883\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	953883-953914	32	NZ_CP017759	Cupriavidus necator strain NH9 plasmid pENH92, complete sequence	48479-48510	8	0.75
NZ_CP041171_2	2.17\|953944\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	953944-953975	32	NZ_CP017759	Cupriavidus necator strain NH9 plasmid pENH92, complete sequence	48479-48510	8	0.75
NZ_CP041171_2	2.18\|954005\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	954005-954036	32	NZ_HG938354	Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence	227163-227194	8	0.75
NZ_CP041171_2	2.19\|954066\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	954066-954097	32	NZ_CP048109	Klebsiella michiganensis strain BD177 plasmid unnamed1	11553-11584	8	0.75
NZ_CP041171_2	2.20\|954127\|32\|NZ_CP041171\|CRISPRCasFinder,CRT	954127-954158	32	JX434031	Pseudomonas phage JBD24, complete genome	2242-2273	8	0.75
NZ_CP041171_3	3.5\|970630\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	970630-970661	32	NZ_CP024786	Nostoc flagelliforme CCNUN1 plasmid pNFSY01, complete sequence	14571-14602	8	0.75
NZ_CP041171_3	3.5\|970630\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	970630-970661	32	NZ_CP026687	Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid pNPM5, complete sequence	3635-3666	8	0.75
NZ_CP041171_3	3.15\|971242\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	971242-971273	32	NZ_CP049029	Fluviibacterium aquatile strain SC52 plasmid pSC52_1, complete sequence	198521-198552	8	0.75
NZ_CP041171_3	3.17\|971364\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	971364-971395	32	NZ_CP039340	Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence	290305-290336	8	0.75
NZ_CP041171_2	2.8\|953395\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	953395-953426	32	NC_012811	Methylorubrum extorquens AM1 megaplasmid, complete sequence	1179902-1179933	9	0.719
NZ_CP041171_2	2.12\|953639\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	953639-953670	32	MN694334	Marine virus AFVG_250M1054, complete genome	5152-5183	9	0.719
NZ_CP041171_2	2.14\|953761\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	953761-953792	32	NC_021289	Burkholderia insecticola plasmid p1, complete sequence	1162182-1162213	9	0.719
NZ_CP041171_3	3.5\|970630\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	970630-970661	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	64408-64439	9	0.719
NZ_CP041171_3	3.5\|970630\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	970630-970661	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	88752-88783	9	0.719
NZ_CP041171_3	3.10\|970935\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	970935-970966	32	MN693670	Marine virus AFVG_250M508, complete genome	3528-3559	9	0.719
NZ_CP041171_3	3.10\|970935\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	970935-970966	32	MN693662	Marine virus AFVG_250M383, complete genome	3578-3609	9	0.719
NZ_CP041171_3	3.10\|970935\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	970935-970966	32	MN694314	Marine virus AFVG_250M513, complete genome	34322-34353	9	0.719
NZ_CP041171_3	3.13\|971119\|33\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	971119-971151	33	NC_014825	Ruminococcus albus 7 = DSM 20455 plasmid pRUMAL02, complete sequence	201147-201179	9	0.727
NZ_CP041171_3	3.17\|971364\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	971364-971395	32	NZ_CP017833	Butyrivibrio hungatei strain MB2003 plasmid pNP6, complete sequence	3577-3608	9	0.719
NZ_CP041171_3	3.27\|971975\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	971975-972006	32	NZ_CP049157	Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence	1929932-1929963	9	0.719
NZ_CP041171_3	3.27\|971975\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	971975-972006	32	NZ_CP049317	Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence	1709399-1709430	9	0.719
NZ_CP041171_2	2.5\|953212\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	953212-953243	32	MN694012	Marine virus AFVG_250M887, complete genome	22169-22200	10	0.688
NZ_CP041171_2	2.8\|953395\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	953395-953426	32	NZ_KU140623	Sinorhizobium sp. M14 plasmid pSinB, complete sequence	129526-129557	10	0.688
NZ_CP041171_2	2.14\|953761\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	953761-953792	32	NZ_CP010682	Phaeobacter piscinae strain P14 plasmid pP14_a, complete sequence	38809-38840	10	0.688
NZ_CP041171_2	2.14\|953761\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	953761-953792	32	NZ_CP010644	Phaeobacter piscinae strain P36 plasmid pP36_a, complete sequence	38859-38890	10	0.688
NZ_CP041171_2	2.18\|954005\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	954005-954036	32	KX349325	Cyanophage S-RIM12 isolate W1_24_0910, complete genome	14478-14509	10	0.688
NZ_CP041171_2	2.18\|954005\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	954005-954036	32	KX349322	Cyanophage S-RIM12 isolate Sn_31_0910, complete genome	14481-14512	10	0.688
NZ_CP041171_2	2.18\|954005\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	954005-954036	32	KX349320	Cyanophage S-RIM12 isolate RW_29_1109, complete genome	14619-14650	10	0.688
NZ_CP041171_2	2.18\|954005\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	954005-954036	32	KX349310	Cyanophage S-RIM12 isolate RW_01_0310, complete genome	14374-14405	10	0.688
NZ_CP041171_2	2.18\|954005\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	954005-954036	32	KX349321	Cyanophage S-RIM12 isolate Sn_07_0910, complete genome	14374-14405	10	0.688
NZ_CP041171_2	2.18\|954005\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	954005-954036	32	KX349324	Cyanophage S-RIM12 isolate W1_12_0610, complete genome	14571-14602	10	0.688
NZ_CP041171_2	2.18\|954005\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	954005-954036	32	KX349314	Cyanophage S-RIM12 isolate RW_07_1112, complete genome	14619-14650	10	0.688
NZ_CP041171_2	2.18\|954005\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	954005-954036	32	KX349316	Cyanophage S-RIM12 isolate RW_22_0110, complete genome	14619-14650	10	0.688
NZ_CP041171_2	2.18\|954005\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	954005-954036	32	KJ019063	Synechococcus phage ACG-2014c isolate Syn7803C97, complete genome	164294-164325	10	0.688
NZ_CP041171_2	2.18\|954005\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	954005-954036	32	KJ019027	Synechococcus phage ACG-2014c isolate Syn7803C43, complete genome	166603-166634	10	0.688
NZ_CP041171_2	2.18\|954005\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	954005-954036	32	KX349315	Cyanophage S-RIM12 isolate RW_14_0101, complete genome	14625-14656	10	0.688
NZ_CP041171_2	2.18\|954005\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	954005-954036	32	KX349317	Cyanophage S-RIM12 isolate RW_25_0210, complete genome	14625-14656	10	0.688
NZ_CP041171_2	2.18\|954005\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	954005-954036	32	NC_019444	Synechococcus phage S-MbCM6, complete genome	166612-166643	10	0.688
NZ_CP041171_2	2.18\|954005\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	954005-954036	32	KJ019128	Synechococcus phage ACG-2014c isolate Syn7803US88, complete genome	166709-166740	10	0.688
NZ_CP041171_2	2.18\|954005\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	954005-954036	32	NC_015285	Prochlorococcus phage Syn33, complete genome	14618-14649	10	0.688
NZ_CP041171_2	2.18\|954005\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	954005-954036	32	KX349309	Cyanophage S-RIM12 isolate Np_22_1112, complete genome	14613-14644	10	0.688
NZ_CP041171_2	2.18\|954005\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	954005-954036	32	KX349319	Cyanophage S-RIM12 isolate RW_28_1109, complete genome	14604-14635	10	0.688
NZ_CP041171_2	2.18\|954005\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	954005-954036	32	KX349318	Cyanophage S-RIM12 isolate RW_27_0310, complete genome	14685-14716	10	0.688
NZ_CP041171_3	3.10\|970935\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	970935-970966	32	MN694051	Marine virus AFVG_250M33, complete genome	34372-34403	10	0.688
NZ_CP041171_3	3.20\|971547\|32\|NZ_CP041171\|PILER-CR,CRISPRCasFinder,CRT	971547-971578	32	MK249150	Blackfly microvirus SF02 isolate 046, complete genome	3613-3644	10	0.688
NZ_CP041171_3	3.28\|972036\|32\|NZ_CP041171\|CRISPRCasFinder,CRT	972036-972067	32	CP054927	Streptomyces fulvissimus strain NA06532 plasmid unnamed1, complete sequence	47822-47853	11	0.656

1. spacer 3.4|970569|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KU963390 (Escherichia coli strain ECO37 plasmid ECO37P2, complete sequence) position: , mismatch: 0, identity: 1.0

tttggttgatgcgtcaaacctcgctaactttg	CRISPR spacer
tttggttgatgcgtcaaacctcgctaactttg	Protospacer
********************************

2. spacer 3.4|970569|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KU963390 (Escherichia coli strain ECO37 plasmid ECO37P2, complete sequence) position: , mismatch: 0, identity: 1.0

tttggttgatgcgtcaaacctcgctaactttg	CRISPR spacer
tttggttgatgcgtcaaacctcgctaactttg	Protospacer
********************************

3. spacer 3.4|970569|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010193 (Escherichia coli strain M8 plasmid B, complete genome) position: , mismatch: 0, identity: 1.0

tttggttgatgcgtcaaacctcgctaactttg	CRISPR spacer
tttggttgatgcgtcaaacctcgctaactttg	Protospacer
********************************

4. spacer 2.14|953761|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010173 (Escherichia coli strain H8 plasmid A, complete sequence) position: , mismatch: 2, identity: 0.938

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
gcgtgcgccgggatattgcgccgagccgaaaa	Protospacer
*********************** *****.**

5. spacer 2.14|953761|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021729 (Escherichia coli strain Combat11I9 plasmid pCombat11I9-3, complete sequence) position: , mismatch: 2, identity: 0.938

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
gcgtgcgccgggatattgcgccgagccgaaaa	Protospacer
*********************** *****.**

6. spacer 2.14|953761|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046005 (Escherichia coli strain 1919D3 plasmid p1919D3-2, complete sequence) position: , mismatch: 2, identity: 0.938

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
gcgtgcgccgggatattgcgccgagccgaaaa	Protospacer
*********************** *****.**

7. spacer 2.14|953761|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to MG592476 (Vibrio phage 1.104.O._10N.286.49.A12, partial genome) position: , mismatch: 2, identity: 0.938

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
gcgtgcgcagggatattgcgccgagccgagaa	Protospacer
******** ************** ********

8. spacer 2.14|953761|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to MG592538 (Vibrio phage 1.171.O._10N.261.52.F12, partial genome) position: , mismatch: 2, identity: 0.938

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
gcgtgcgccgggatactgcgccgagccgagaa	Protospacer
***************.******* ********

9. spacer 2.14|953761|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to MG592428 (Vibrio phage 1.046.O._10N.286.52.E3, partial genome) position: , mismatch: 2, identity: 0.938

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
gcgtgcgcagggatattgcgccgagccgagaa	Protospacer
******** ************** ********

10. spacer 2.14|953761|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to CP054337 (Escherichia coli strain SCU-120 plasmid pSCU-120-2, complete sequence) position: , mismatch: 4, identity: 0.875

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
gcgtgcgccgggatattgcgccgagcagaggc	Protospacer
*********************** ** ***.

11. spacer 2.14|953761|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021537 (Escherichia coli strain AR_0119 plasmid unitig_3, complete sequence) position: , mismatch: 4, identity: 0.875

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
gcgtgcgccgggatattgcgccgagcagaggc	Protospacer
*********************** ** ***.

12. spacer 2.14|953761|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026938 (Escherichia coli strain CFS3292 plasmid pCFS3292-3, complete sequence) position: , mismatch: 4, identity: 0.875

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
gcgtgcgccgggatattgcgccgagcagaggc	Protospacer
*********************** ** ***.

13. spacer 2.14|953761|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH844525 (Escherichia coli strain SCEC128 plasmid pSCEC128, complete sequence) position: , mismatch: 4, identity: 0.875

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
gcgtgcgccgggatattgcgccgagcagaggc	Protospacer
*********************** ** ***.

14. spacer 2.14|953761|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH580301 (Escherichia coli strain 1107 plasmid p1107-99K, complete sequence) position: , mismatch: 4, identity: 0.875

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
gcgtgcgccgggatattgcgccgagcagaggc	Protospacer
*********************** ** ***.

15. spacer 2.14|953761|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042508 (Leclercia adecarboxylata strain E1 plasmid pE1_003, complete sequence) position: , mismatch: 4, identity: 0.875

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
gcgtgcgccgggatattacgccgcgcagtcaa	Protospacer
*****************.******** *  **

16. spacer 2.14|953761|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040893 (Leclercia adecarboxylata strain Z96-1 plasmid pZ96-1_2, complete sequence) position: , mismatch: 4, identity: 0.875

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
gcgtgcgccgggatattacgccgcgcagtcaa	Protospacer
*****************.******** *  **

17. spacer 3.4|970569|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to NC_011148 (Salmonella enterica subsp. enterica serovar Agona str. SL483 plasmid, complete sequence) position: , mismatch: 4, identity: 0.875

tttggttgatgcgtcaaacctcgctaactttg	CRISPR spacer
cctgattgatgcttcaaacctcgctaactttg	Protospacer
..**.******* *******************

18. spacer 3.6|970691|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041251 (Raoultella electrica strain DSM 102253 plasmid unnamed4, complete sequence) position: , mismatch: 4, identity: 0.875

gagcgatgttggcatggcattggtttactgta	CRISPR spacer
gggtgatgtaggtatggcattggtttactgta	Protospacer
*.*.***** **.*******************

19. spacer 3.10|970935|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to NC_021559 (Prochlorococcus phage P-SSM3 genomic sequence) position: , mismatch: 5, identity: 0.844

gacgct-tcacctgcatcaaattctcctccagt	CRISPR spacer
-acactatcacctgcagcaaattctgctccaga	Protospacer
 **.** ********* ******** ******

20. spacer 3.27|971975|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022304 (Thalassococcus sp. S3 plasmid pS3A, complete sequence) position: , mismatch: 5, identity: 0.844

gcagaaacagaaaccggatatgagcc-atccat	CRISPR spacer
gaagagacagaaaccggctatgagctgatcca-	Protospacer
* ***.*********** *******. *****

21. spacer 3.4|970569|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to NC_017903 (Escherichia coli Xuzhou21 plasmid pO157_Sal, complete sequence) position: , mismatch: 6, identity: 0.812

tttggttgatgcgtcaaacctcgctaactttg	CRISPR spacer
ccttattgatgcttctaacctcgctaactttg	Protospacer
..* .******* ** ****************

22. spacer 3.10|970935|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to MN694803 (Marine virus AFVG_250M814, complete genome) position: , mismatch: 6, identity: 0.812

gacgcttcacctgcatcaaattctcctccagt--	CRISPR spacer
aacccttcacctgcatcatattct--tccaggcg	Protospacer
.** ************** *****  *****

23. spacer 3.27|971975|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023072 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666a, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaacagaaaccggatatgagccatccat	CRISPR spacer
tgacgaacagaaaccggatatgaggcatccct	Protospacer
  * .******************* ***** *

24. spacer 2.8|953395|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to KX657793 (Mycobacterium phage DarthPhader, complete genome) position: , mismatch: 7, identity: 0.781

ccgcagaacgccgcatcgccgaactggacaaa	CRISPR spacer
cgttcgaccgccgcatagccgaactggacaag	Protospacer
*  . ** ******** **************.

25. spacer 2.9|953456|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006990 (Rhizobium sp. IE4771 plasmid pRetIE4771d, complete sequence) position: , mismatch: 7, identity: 0.781

tgccggtttatctgctccagacc--gatcgacta	CRISPR spacer
tgccggtctatctgctcctgaccaaggccgat--	Protospacer
*******.********** ****  *..***.

26. spacer 2.9|953456|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013556 (Rhizobium phaseoli strain N931 plasmid pRphaN931d, complete sequence) position: , mismatch: 7, identity: 0.781

tgccggtttatctgctccagacc--gatcgacta	CRISPR spacer
tgccggtctatctgctcctgaccaaggccgat--	Protospacer
*******.********** ****  *..***.

27. spacer 2.9|953456|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020911 (Rhizobium etli strain NXC12 plasmid pRetNXC12e, complete sequence) position: , mismatch: 7, identity: 0.781

tgccggtttatctgctccagacc--gatcgacta	CRISPR spacer
tgccggtctatctgctcctgaccaaggccgat--	Protospacer
*******.********** ****  *..***.

28. spacer 2.9|953456|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to NC_021911 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1f, complete sequence) position: , mismatch: 7, identity: 0.781

tgccggtttatctgctccagacc--gatcgacta	CRISPR spacer
tgccggtctatctgctcctgaccaaggccgat--	Protospacer
*******.********** ****  *..***.

29. spacer 2.9|953456|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013567 (Rhizobium phaseoli strain N831 plasmid pRphaN831d, complete sequence) position: , mismatch: 7, identity: 0.781

tgccggtttatctgctccagacc--gatcgacta	CRISPR spacer
tgccggtctatctgctcctgaccaaggccgat--	Protospacer
*******.********** ****  *..***.

30. spacer 2.9|953456|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021127 (Rhizobium sp. Kim5 plasmid pRetKim5c, complete sequence) position: , mismatch: 7, identity: 0.781

tgccggtttatctgctccagacc--gatcgacta	CRISPR spacer
tgccggtctatctgctcctgaccaaggccgat--	Protospacer
*******.********** ****  *..***.

31. spacer 2.14|953761|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to NC_017385 (Ketogulonicigenium vulgare WSH-001 plasmid 2, complete sequence) position: , mismatch: 7, identity: 0.781

gcgtg-cgccgggatattgcgccgcgccgagaa	CRISPR spacer
-catgccgccgcgatattgccccgcgccgccag	Protospacer
 *.** ***** ******** ********  *.

32. spacer 2.14|953761|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012910 (Ketogulonicigenium vulgare strain Hbe602 plasmid 2, complete sequence) position: , mismatch: 7, identity: 0.781

gcgtg-cgccgggatattgcgccgcgccgagaa	CRISPR spacer
-catgccgccgcgatattgccccgcgccgccag	Protospacer
 *.** ***** ******** ********  *.

33. spacer 2.14|953761|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to NC_014626 (Ketogulonicigenium vulgare Y25 plasmid pYP12, complete sequence) position: , mismatch: 7, identity: 0.781

gcgtg-cgccgggatattgcgccgcgccgagaa	CRISPR spacer
-catgccgccgcgatattgccccgcgccgccag	Protospacer
 *.** ***** ******** ********  *.

34. spacer 2.19|954066|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to MF495478 (Aeromonas salmonicida plasmid pS121-1b, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgtggtgtatatcggtcttgatgcgttgtc	CRISPR spacer
gcagtggtctatatcggtctggatgccatgac	Protospacer
*  ***** *********** *****  ** *

35. spacer 2.19|954066|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038450 (Aeromonas media strain R50-22 plasmid pAeme6, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgtggtgtatatcggtcttgatgcgttgtc	CRISPR spacer
gcagtggtctatatcggtctggatgccatgac	Protospacer
*  ***** *********** *****  ** *

36. spacer 2.19|954066|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022170 (Aeromonas salmonicida strain S121 plasmid pS121-1a, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgtggtgtatatcggtcttgatgcgttgtc	CRISPR spacer
gcagtggtctatatcggtctggatgccatgac	Protospacer
*  ***** *********** *****  ** *

37. spacer 3.18|971425|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to MH651182 (Gordonia phage Neville, complete genome) position: , mismatch: 7, identity: 0.781

ccttggcggcagccacctgagcaactgtcggg	CRISPR spacer
caatctcggcagtcacctgagcaactgtcaag	Protospacer
*  *  ******.****************..*

38. spacer 2.6|953273|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023712 (Rhodococcus ruber strain YC-YT1 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

cgtttatgagattgtgagacagcttgatcctg	CRISPR spacer
cgccgacccgattgggacacagcttgatcctg	Protospacer
**.. *.  ***** ** **************

39. spacer 2.7|953334|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to MN693945 (Marine virus AFVG_250M952, complete genome) position: , mismatch: 8, identity: 0.75

accgttatctgctggttgatacttccccgagc---	CRISPR spacer
gccgttatcggctggtttatactt---aaagcaaa	Protospacer
.******** ******* ******    .***

40. spacer 2.7|953334|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to MT773554 (Myoviridae sp. isolate BML_2 genomic sequence) position: , mismatch: 8, identity: 0.75

accgttatctgctggttgatacttccccgagc	CRISPR spacer
aacattatctgctggttgatagtttccataat	Protospacer
* *.***************** **.**  *..

41. spacer 2.15|953822|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to MK448563 (Streptococcus satellite phage Javan601, complete genome) position: , mismatch: 8, identity: 0.75

tccttttattctaatgggttagatagggtaga	CRISPR spacer
gaaatttattctaacgagttagatagggttgc	Protospacer
    **********.*.************ *

42. spacer 2.15|953822|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to MK448565 (Streptococcus satellite phage Javan603, complete genome) position: , mismatch: 8, identity: 0.75

tccttttattctaatgggttagatagggtaga	CRISPR spacer
gaaatttattctaacgagttagatagggttgc	Protospacer
    **********.*.************ *

43. spacer 2.15|953822|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to MK448571 (Streptococcus satellite phage Javan609, complete genome) position: , mismatch: 8, identity: 0.75

tccttttattctaatgggttagatagggtaga	CRISPR spacer
gaaatttattctaacgagttagatagggttgc	Protospacer
    **********.*.************ *

44. spacer 2.15|953822|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to MK448575 (Streptococcus satellite phage Javan612, complete genome) position: , mismatch: 8, identity: 0.75

tccttttattctaatgggttagatagggtaga	CRISPR spacer
gaaatttattctaacgagttagatagggttgc	Protospacer
    **********.*.************ *

45. spacer 2.15|953822|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to MK448567 (Streptococcus satellite phage Javan605, complete genome) position: , mismatch: 8, identity: 0.75

tccttttattctaatgggttagatagggtaga	CRISPR spacer
gaaatttattctaacgagttagatagggttgc	Protospacer
    **********.*.************ *

46. spacer 2.15|953822|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to MK448574 (Streptococcus satellite phage Javan611, complete genome) position: , mismatch: 8, identity: 0.75

tccttttattctaatgggttagatagggtaga	CRISPR spacer
gaaatttattctaacgagttagatagggttgc	Protospacer
    **********.*.************ *

47. spacer 2.15|953822|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to MK448578 (Streptococcus satellite phage Javan615, complete genome) position: , mismatch: 8, identity: 0.75

tccttttattctaatgggttagatagggtaga	CRISPR spacer
gaaatttattctaacgagttagatagggttgc	Protospacer
    **********.*.************ *

48. spacer 2.15|953822|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to MK448577 (Streptococcus satellite phage Javan614, complete genome) position: , mismatch: 8, identity: 0.75

tccttttattctaatgggttagatagggtaga	CRISPR spacer
gaaatttattctaacgagttagatagggttgc	Protospacer
    **********.*.************ *

49. spacer 2.15|953822|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to MK448573 (Streptococcus satellite phage Javan610, complete genome) position: , mismatch: 8, identity: 0.75

tccttttattctaatgggttagatagggtaga	CRISPR spacer
gaaatttattctaacgagttagatagggttgc	Protospacer
    **********.*.************ *

50. spacer 2.15|953822|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to MK448568 (Streptococcus satellite phage Javan606, complete genome) position: , mismatch: 8, identity: 0.75

tccttttattctaatgggttagatagggtaga	CRISPR spacer
gaaatttattctaacgagttagatagggttgc	Protospacer
    **********.*.************ *

51. spacer 2.15|953822|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to MK448570 (Streptococcus satellite phage Javan608, complete genome) position: , mismatch: 8, identity: 0.75

tccttttattctaatgggttagatagggtaga	CRISPR spacer
gaaatttattctaacgagttagatagggttgc	Protospacer
    **********.*.************ *

52. spacer 2.15|953822|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to MK448564 (Streptococcus satellite phage Javan602, complete genome) position: , mismatch: 8, identity: 0.75

tccttttattctaatgggttagatagggtaga	CRISPR spacer
gaaatttattctaacgagttagatagggttgc	Protospacer
    **********.*.************ *

53. spacer 2.15|953822|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to MK448566 (Streptococcus satellite phage Javan604, complete genome) position: , mismatch: 8, identity: 0.75

tccttttattctaatgggttagatagggtaga	CRISPR spacer
gaaatttattctaacgagttagatagggttgc	Protospacer
    **********.*.************ *

54. spacer 2.16|953883|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017759 (Cupriavidus necator strain NH9 plasmid pENH92, complete sequence) position: , mismatch: 8, identity: 0.75

aaaactgcaccgccgctgccactgagtttgct	CRISPR spacer
gatgtagcacagccgctgccactgattttggt	Protospacer
.* .. **** ************** **** *

55. spacer 2.17|953944|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017759 (Cupriavidus necator strain NH9 plasmid pENH92, complete sequence) position: , mismatch: 8, identity: 0.75

aaaactgcaccgccgctgccactgagtttgct	CRISPR spacer
gatgtagcacagccgctgccactgattttggt	Protospacer
.* .. **** ************** **** *

56. spacer 2.18|954005|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to NZ_HG938354 (Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence) position: , mismatch: 8, identity: 0.75

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
gtgtcgtatttacaggtgtcacggttttccct	Protospacer
*.*. * *************** *** ***

57. spacer 2.19|954066|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP048109 (Klebsiella michiganensis strain BD177 plasmid unnamed1) position: , mismatch: 8, identity: 0.75

ggcgtggtgtatatcggtcttgatgcgttgtc	CRISPR spacer
gccgtggtgtatatcggcctcgatgcactcag	Protospacer
* ***************.**.*****..*

58. spacer 2.20|954127|32|NZ_CP041171|CRISPRCasFinder,CRT matches to JX434031 (Pseudomonas phage JBD24, complete genome) position: , mismatch: 8, identity: 0.75

gtcacgaggtctgacgcggatgtgatg--agtta	CRISPR spacer
tcggcgaggtctgccgcgaatgtgatggcagt--	Protospacer
 . .********* ****.********  ***

59. spacer 3.5|970630|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024786 (Nostoc flagelliforme CCNUN1 plasmid pNFSY01, complete sequence) position: , mismatch: 8, identity: 0.75

gcggaataataaatggagtgccatttgtagca	CRISPR spacer
gttgaataataaatgcagtgccttttcttcta	Protospacer
*. ************ ****** *** *  .*

60. spacer 3.5|970630|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026687 (Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid pNPM5, complete sequence) position: , mismatch: 8, identity: 0.75

gcggaataataaatggagtgccatttgtagca	CRISPR spacer
gttgaataataaatgcagtgccttttcttcta	Protospacer
*. ************ ****** *** *  .*

61. spacer 3.15|971242|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049029 (Fluviibacterium aquatile strain SC52 plasmid pSC52_1, complete sequence) position: , mismatch: 8, identity: 0.75

ttgcgctgttctattggcggcaattctctgaa----	CRISPR spacer
ccgcgctgttcaattggcggcgat----tgaagcgc	Protospacer
..********* *********.**    ****

62. spacer 3.17|971364|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039340 (Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence) position: , mismatch: 8, identity: 0.75

acacgccagccaacaatattaattttgtcgtc	CRISPR spacer
aaaaatgggccatcaatattaattttgtcgtt	Protospacer
* * .. .**** ******************.

63. spacer 2.8|953395|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to NC_012811 (Methylorubrum extorquens AM1 megaplasmid, complete sequence) position: , mismatch: 9, identity: 0.719

ccgcagaacgccgcatcgccgaactggacaaa	CRISPR spacer
ccgcagaacgccgcattgccggacctcattcc	Protospacer
****************.****.**.  *.

64. spacer 2.12|953639|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to MN694334 (Marine virus AFVG_250M1054, complete genome) position: , mismatch: 9, identity: 0.719

tgctgaatctttgcgagtgggatgatggcact	CRISPR spacer
aggttcggctttgcgagttggctgatggcacc	Protospacer
 * *  . ********** ** *********.

65. spacer 2.14|953761|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to NC_021289 (Burkholderia insecticola plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
tcgcgcgccgggatattgcgcagcgtgaacgc	Protospacer
 **.***************** ***. .* .

66. spacer 3.5|970630|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

gcggaataataaatggagtgccatttgtagca	CRISPR spacer
cgctaataataaatggaatgccatgtggggcg	Protospacer
    *************.****** ** .**.

67. spacer 3.5|970630|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

gcggaataataaatggagtgccatttgtagca	CRISPR spacer
cgctaataataaatggaatgccatgtggggcg	Protospacer
    *************.****** ** .**.

68. spacer 3.10|970935|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to MN693670 (Marine virus AFVG_250M508, complete genome) position: , mismatch: 9, identity: 0.719

gacgcttcacctgcatcaaattctcctccagt	CRISPR spacer
tagccttcacctgcgtcaaattcttctaatct	Protospacer
 *  **********.*********.**    *

69. spacer 3.10|970935|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to MN693662 (Marine virus AFVG_250M383, complete genome) position: , mismatch: 9, identity: 0.719

gacgcttcacctgcatcaaattctcctccagt	CRISPR spacer
tagccttcacctgcgtcaaattcttctaatct	Protospacer
 *  **********.*********.**    *

70. spacer 3.10|970935|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to MN694314 (Marine virus AFVG_250M513, complete genome) position: , mismatch: 9, identity: 0.719

gacgcttcacctgcatcaaattctcctccagt	CRISPR spacer
tagccttcacctgcgtcaaattcttctaatct	Protospacer
 *  **********.*********.**    *

71. spacer 3.13|971119|33|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to NC_014825 (Ruminococcus albus 7 = DSM 20455 plasmid pRUMAL02, complete sequence) position: , mismatch: 9, identity: 0.727

cgcacgcgggttgcgtaacggatatacgacagc	CRISPR spacer
gttcagcggtttgcgtaaaggatatacgaccac	Protospacer
  .  **** ******** *********** .*

72. spacer 3.17|971364|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017833 (Butyrivibrio hungatei strain MB2003 plasmid pNP6, complete sequence) position: , mismatch: 9, identity: 0.719

acacgccagccaacaatattaattttgtcgtc	CRISPR spacer
gcctgacagccaaaaacattaattttgtcagg	Protospacer
.* .* ******* **.************.

73. spacer 3.27|971975|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049157 (Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence) position: , mismatch: 9, identity: 0.719

gcagaaacagaaaccggatatgagccatccat	CRISPR spacer
ggtcacccagaaaccggaaatgagccagccga	Protospacer
*   *  *********** ******** **.

74. spacer 3.27|971975|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049317 (Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence) position: , mismatch: 9, identity: 0.719

gcagaaacagaaaccggatatgagccatccat	CRISPR spacer
ggtcacccagaaaccggaaatgagccagccga	Protospacer
*   *  *********** ******** **.

75. spacer 2.5|953212|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to MN694012 (Marine virus AFVG_250M887, complete genome) position: , mismatch: 10, identity: 0.688

cttgtcggcgttgctcacgtgactatttcgca	CRISPR spacer
ggtacttacgttgctcacgtaactattacgcc	Protospacer
  *... .************.****** ***

76. spacer 2.8|953395|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KU140623 (Sinorhizobium sp. M14 plasmid pSinB, complete sequence) position: , mismatch: 10, identity: 0.688

ccgcagaacgccgcatcgccgaactggacaaa	CRISPR spacer
cgatcgaacagcgcatcgccgaactggaagcg	Protospacer
* .. ****. ***************** . .

77. spacer 2.14|953761|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010682 (Phaeobacter piscinae strain P14 plasmid pP14_a, complete sequence) position: , mismatch: 10, identity: 0.688

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
cggtgccccaggatattgcgccgcgcatgccg	Protospacer
  **** **.****************  .  .

78. spacer 2.14|953761|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010644 (Phaeobacter piscinae strain P36 plasmid pP36_a, complete sequence) position: , mismatch: 10, identity: 0.688

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
cggtgccccaggatattgcgccgcgcacgccg	Protospacer
  **** **.****************  .  .

79. spacer 2.18|954005|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to KX349325 (Cyanophage S-RIM12 isolate W1_24_0910, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .

80. spacer 2.18|954005|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to KX349322 (Cyanophage S-RIM12 isolate Sn_31_0910, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .

81. spacer 2.18|954005|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to KX349320 (Cyanophage S-RIM12 isolate RW_29_1109, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .

82. spacer 2.18|954005|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to KX349310 (Cyanophage S-RIM12 isolate RW_01_0310, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .

83. spacer 2.18|954005|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to KX349321 (Cyanophage S-RIM12 isolate Sn_07_0910, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .

84. spacer 2.18|954005|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to KX349324 (Cyanophage S-RIM12 isolate W1_12_0610, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .

85. spacer 2.18|954005|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to KX349314 (Cyanophage S-RIM12 isolate RW_07_1112, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .

86. spacer 2.18|954005|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to KX349316 (Cyanophage S-RIM12 isolate RW_22_0110, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .

87. spacer 2.18|954005|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to KJ019063 (Synechococcus phage ACG-2014c isolate Syn7803C97, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
cagaagaatttactggtgtcactggtgagttt	Protospacer
  * ********* ********** **  .

88. spacer 2.18|954005|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to KJ019027 (Synechococcus phage ACG-2014c isolate Syn7803C43, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
cagaagaatttactggtgtcactggtgagttt	Protospacer
  * ********* ********** **  .

89. spacer 2.18|954005|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to KX349315 (Cyanophage S-RIM12 isolate RW_14_0101, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .

90. spacer 2.18|954005|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to KX349317 (Cyanophage S-RIM12 isolate RW_25_0210, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .

91. spacer 2.18|954005|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to NC_019444 (Synechococcus phage S-MbCM6, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
cagaagaatttactggtgtcactggtgagttt	Protospacer
  * ********* ********** **  .

92. spacer 2.18|954005|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to KJ019128 (Synechococcus phage ACG-2014c isolate Syn7803US88, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .

93. spacer 2.18|954005|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to NC_015285 (Prochlorococcus phage Syn33, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .

94. spacer 2.18|954005|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to KX349309 (Cyanophage S-RIM12 isolate Np_22_1112, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .

95. spacer 2.18|954005|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to KX349319 (Cyanophage S-RIM12 isolate RW_28_1109, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .

96. spacer 2.18|954005|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to KX349318 (Cyanophage S-RIM12 isolate RW_27_0310, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .

97. spacer 3.10|970935|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to MN694051 (Marine virus AFVG_250M33, complete genome) position: , mismatch: 10, identity: 0.688

gacgcttcacctgcatcaaattctcctccagt	CRISPR spacer
tagccttcaccagcatcaaattcttctaagcg	Protospacer
 *  ******* ************.**  .

98. spacer 3.20|971547|32|NZ_CP041171|PILER-CR,CRISPRCasFinder,CRT matches to MK249150 (Blackfly microvirus SF02 isolate 046, complete genome) position: , mismatch: 10, identity: 0.688

ttaatgcggtcattggtcatgtctctaaaaga	CRISPR spacer
gccatgccgtcattggtgatgtctctttcgaa	Protospacer
 . **** ********* ********   ..*

99. spacer 3.28|972036|32|NZ_CP041171|CRISPRCasFinder,CRT matches to CP054927 (Streptomyces fulvissimus strain NA06532 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.656

aggggcgttccgcagtcggcaagggctgaaaa	CRISPR spacer
tcgggcatcccgcagtcggcaagggtgcggcg	Protospacer
  ****.*.****************.  .. .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1138583 : 1148464

Enterobacteria_phage(88.89%)

integrase

attL 1144254:1144269|attR 1151079:1151094

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_107919754.1\|1138583_1140917_-	toprim domain-containing protein	Q7M2A8	Enterobacteria_phage	0.0e+00	84.0
WP_000743150.1\|1140931_1141252_-	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_001145746.1\|1141248_1141509_-	hypothetical protein	NA	NA	NA	NA
WP_000459283.1\|1141582_1142032_-	hypothetical protein	Q7M298	Enterobacteria_phage	1.5e-43	70.5
WP_000556707.1\|1142024_1142324_-	hypothetical protein	Q7M2A0	Enterobacteria_phage	6.1e-28	70.7
WP_001750323.1\|1142313_1142916_-	host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	4.2e-44	70.8
WP_001750322.1\|1142912_1143179_-	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	1.1e-33	78.4
WP_000149859.1\|1143726_1144464_+	hypothetical protein	Q7M2A2	Enterobacteria_phage	1.7e-76	62.3
1144254:1144269	attL	NA	NA	NA	NA
WP_000984203.1\|1144460_1144706_+	ogr/Delta-like zinc finger family protein	Q7M294	Enterobacteria_phage	5.3e-30	75.3
WP_000210076.1\|1144722_1145289_+	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	1.3e-55	62.7
WP_001604631.1\|1145821_1147231_+	hypothetical protein	NA	NA	NA	NA
WP_001604633.1\|1147267_1148464_-\|integrase	tyrosine-type recombinase/integrase	A0A1B5FPC6	Escherichia_phage	4.1e-107	50.0
1151079:1151094	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1439262 : 1489610

Salmonella_phage(72.22%)

integrase,terminase,lysis,head,tail,protease

attL 1455745:1455760|attR 1490404:1490419

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000716009.1\|1439262_1440201_+\|protease	omptin family outer membrane protease PgtE	NA	NA	NA	NA
WP_053253392.1\|1440463_1440667_-	histidine kinase	I6RSG8	Salmonella_phage	1.0e-31	98.5
WP_155675089.1\|1440763_1440904_-	hypothetical protein	A0A0M4QWX3	Salmonella_phage	4.2e-16	97.8
WP_000002104.1\|1440972_1441257_-	ASCH domain-containing protein	Q76H28	Enterobacteria_phage	1.4e-50	100.0
WP_000371199.1\|1441249_1441534_-	DUF4752 family protein	Q76H46	Enterobacteria_phage	1.6e-49	100.0
WP_025617570.1\|1441533_1442178_-	ead/Ea22-like family protein	Q76H45	Enterobacteria_phage	1.4e-122	99.5
WP_071533029.1\|1442164_1442398_-	Lar family restriction alleviation protein	NA	NA	NA	NA
WP_065680793.1\|1442394_1442820_-	hypothetical protein	Q76H44	Enterobacteria_phage	7.2e-67	79.3
WP_001214770.1\|1442816_1442987_-	DUF2737 family protein	I6S642	Salmonella_phage	6.1e-25	100.0
WP_141151304.1\|1442997_1443291_-	DUF2856 family protein	I6R0R5	Salmonella_phage	6.4e-22	56.7
WP_131535358.1\|1443308_1443857_-	3'-5' exoribonuclease	C6ZR35	Salmonella_phage	1.5e-101	96.2
WP_131535356.1\|1443865_1444372_-	single-stranded DNA-binding protein	C6ZR36	Salmonella_phage	1.0e-83	89.9
WP_141151305.1\|1444372_1445080_-	recombinase	A0A192Y857	Salmonella_phage	9.1e-131	94.0
WP_016050294.1\|1445076_1445220_-	hypothetical protein	I6R9C0	Salmonella_phage	2.4e-19	100.0
WP_086127069.1\|1445209_1445398_-	DUF5444 family protein	A0A1R3Y5S5	Salmonella_virus	1.4e-30	96.8
WP_000141641.1\|1445378_1445537_-\|protease	protease FtsH-inhibitory lysogeny factor CIII	Q76H38	Enterobacteria_phage	2.4e-23	100.0
WP_141151306.1\|1445762_1446422_-	pentapeptide repeat-containing protein	Q76H35	Enterobacteria_phage	3.2e-45	95.4
WP_141151307.1\|1446505_1446700_-	restriction endonuclease	E7C9Q6	Salmonella_phage	5.5e-30	98.4
WP_141151308.1\|1446914_1447502_+	super-infection exclusion protein B	Q76H59	Enterobacteria_phage	7.1e-97	95.9
WP_141151309.1\|1447514_1447877_-	antitermination protein	C6ZR44	Salmonella_phage	5.2e-58	95.8
WP_065680786.1\|1448227_1448437_+	fumarate hydratase FumD	I6R0R9	Salmonella_phage	2.0e-30	98.6
WP_000841071.1\|1448778_1449297_-	hypothetical protein	I6R9C4	Salmonella_phage	1.9e-85	100.0
WP_000020334.1\|1449496_1450192_-	helix-turn-helix transcriptional regulator	A0A2H4FNG6	Salmonella_phage	2.8e-76	60.9
WP_000449405.1\|1450293_1450506_+	helix-turn-helix transcriptional regulator	Q716D6	Shigella_phage	1.6e-14	56.7
WP_000424138.1\|1450636_1450927_+	hypothetical protein	I6RSP4	Salmonella_phage	2.4e-45	100.0
WP_000166968.1\|1450947_1451109_+	hypothetical protein	I6R9C7	Salmonella_phage	1.0e-21	100.0
WP_141151310.1\|1451095_1451944_+	replication protein	I6S659	Salmonella_phage	4.5e-153	97.9
WP_024156492.1\|1452051_1453932_+	toprim domain-containing protein	A0A0M4R313	Salmonella_phage	0.0e+00	99.2
WP_024156491.1\|1453932_1454211_+	hypothetical protein	B9UDH9	Salmonella_phage	1.5e-44	92.4
WP_141151311.1\|1454283_1454490_+	hypothetical protein	A0A192Y802	Salmonella_phage	1.3e-29	95.6
WP_172604432.1\|1454504_1454657_+	hypothetical protein	A0A2H4FWM4	Salmonella_phage	2.6e-19	98.0
WP_057518029.1\|1454668_1454989_+	hypothetical protein	I6R992	Salmonella_phage	4.8e-23	59.4
WP_000049340.1\|1454991_1455288_+	hypothetical protein	E7C9R7	Salmonella_phage	6.8e-48	99.0
WP_141151312.1\|1455244_1455691_+	recombination protein NinB	I6R0N7	Salmonella_phage	3.0e-79	98.0
1455745:1455760	attL	NA	NA	NA	NA
WP_141151313.1\|1455827_1456004_+	NinE family protein	I6RSI9	Salmonella_phage	2.0e-18	79.3
WP_141151314.1\|1456000_1456171_+	NinF family protein	I6R994	Salmonella_phage	1.4e-21	83.3
WP_001749499.1\|1456163_1456400_+	hypothetical protein	C6ZR59	Salmonella_phage	3.4e-34	88.5
WP_141151316.1\|1456838_1457021_+	hypothetical protein	C6ZR61	Salmonella_phage	5.5e-24	96.7
WP_000027547.1\|1457017_1457536_+	DUF1133 family protein	A0A1R3Y5U9	Salmonella_virus	2.0e-95	100.0
WP_079778723.1\|1458000_1458204_+	hypothetical protein	I6R0S9	Salmonella_phage	9.4e-33	98.5
WP_079778729.1\|1458181_1458679_+	lysozyme	A0A0M3ULD1	Salmonella_phage	9.3e-90	97.0
WP_000092260.1\|1458675_1459113_+\|lysis	lysis protein	Q716B4	Shigella_phage	3.8e-71	98.6
WP_079778722.1\|1459325_1460012_+	Rha family transcriptional regulator	A0A192Y918	Salmonella_phage	2.7e-124	99.6
WP_000147264.1\|1460445_1460877_+\|terminase	terminase small subunit	A0A1V0E5Q4	Salmonella_phage	7.6e-72	100.0
WP_065680782.1\|1460860_1462180_+\|terminase	terminase	Q5G8Y7	Enterobacteria_phage	2.3e-260	98.4
WP_065680781.1\|1462312_1463662_+	DUF1073 domain-containing protein	A0A1V0E5Q5	Salmonella_phage	1.3e-255	98.7
WP_065680780.1\|1463621_1464548_+\|head	phage head morphogenesis protein	Q5G8Y3	Enterobacteria_phage	1.9e-168	97.7
WP_065680779.1\|1464550_1465816_+	hypothetical protein	Q5G8Y2	Enterobacteria_phage	3.4e-229	96.9
WP_000092740.1\|1465828_1466278_+	hypothetical protein	I6S1Q2	Salmonella_phage	9.6e-78	100.0
WP_001747836.1\|1466295_1467372_+	hypothetical protein	I6RSK5	Salmonella_phage	2.4e-207	100.0
WP_141151317.1\|1467381_1467561_+	glycoprotein	I6R9A3	Salmonella_phage	3.4e-26	98.3
WP_047641358.1\|1467612_1468014_+	hypothetical protein	I6S619	Salmonella_phage	1.6e-71	99.2
WP_016050271.1\|1468185_1468548_+	hypothetical protein	I6S1Q5	Salmonella_phage	4.3e-68	100.0
WP_001144355.1\|1468555_1468951_+	hypothetical protein	I6RSK8	Salmonella_phage	3.2e-69	100.0
WP_001650226.1\|1468947_1469334_+	hypothetical protein	I6R9A6	Salmonella_phage	2.0e-68	100.0
WP_065680778.1\|1469349_1470087_+	immunoglobulin domain-containing protein	Q5G8X3	Enterobacteria_phage	1.7e-127	96.3
WP_065680777.1\|1470132_1470786_+	hypothetical protein	I6R0Q2	Salmonella_phage	2.5e-119	98.6
WP_023972057.1\|1470817_1471132_+	hypothetical protein	NA	NA	NA	NA
WP_023972058.1\|1471200_1471422_+	hypothetical protein	K7PJU3	Enterobacteria_phage	9.3e-26	78.8
WP_000360561.1\|1471436_1471805_-	hypothetical protein	H6WRU4	Salmonella_phage	9.4e-39	65.0
WP_065680776.1\|1472004_1472331_-	Arc family DNA-binding protein	H6WRU6	Salmonella_phage	8.6e-44	94.9
WP_000414200.1\|1472433_1472595_+	hypothetical protein	A0A077KAX5	Edwardsiella_phage	1.6e-22	98.1
WP_065680775.1\|1472584_1473451_+	hypothetical protein	B6SD57	Bacteriophage	5.1e-67	53.2
WP_001187765.1\|1473515_1474304_+	ORF6N domain-containing protein	H6WRU9	Salmonella_phage	5.2e-127	100.0
WP_141151318.1\|1474683_1475262_+	hypothetical protein	NA	NA	NA	NA
WP_141151319.1\|1475296_1475710_+	hypothetical protein	NA	NA	NA	NA
WP_141151320.1\|1475772_1478958_+	tape measure protein	Q5G8W8	Enterobacteria_phage	1.2e-311	70.3
WP_000884616.1\|1478958_1479357_-	hypothetical protein	A0A1V0E5N6	Salmonella_phage	4.2e-69	98.5
WP_001115295.1\|1479449_1479797_+\|tail	phage tail protein	A0A1V0E5N3	Salmonella_phage	9.1e-60	93.9
WP_000796432.1\|1479949_1480195_-	hypothetical protein	NA	NA	NA	NA
WP_063266541.1\|1480330_1481035_+\|tail	phage minor tail protein L	A0A1V0E5N2	Salmonella_phage	5.5e-136	98.7
WP_065680771.1\|1481034_1481754_+	C40 family peptidase	A0A1V0E5M9	Salmonella_phage	3.4e-133	90.0
WP_033905024.1\|1481696_1482224_+\|tail	tail assembly protein	H6WRW3	Salmonella_phage	3.0e-62	80.0
WP_024133398.1\|1482322_1482877_+	HNH endonuclease	A0A2P1CKX5	Escherichia_phage	2.1e-10	40.0
WP_141151321.1\|1482921_1486092_+	DUF1983 domain-containing protein	A0A1V0E5M1	Salmonella_phage	0.0e+00	97.7
WP_001113928.1\|1486100_1487060_+	hypothetical protein	H6WRW5	Salmonella_phage	6.2e-183	99.7
WP_001272647.1\|1487070_1488369_+	hypothetical protein	I6R0Q9	Salmonella_phage	4.5e-245	99.5
WP_080069444.1\|1488440_1489610_-\|integrase	tyrosine-type recombinase/integrase	I6R0M2	Salmonella_phage	1.0e-227	99.0
1490404:1490419	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1727178 : 1736349

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000569168.1\|1727178_1728126_+	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	2.8e-10	27.8
WP_000824854.1\|1728109_1728841_+	ABC transporter permease	NA	NA	NA	NA
WP_001261696.1\|1728821_1728929_-	protein YohO	NA	NA	NA	NA
WP_001240418.1\|1728988_1729720_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
WP_000272850.1\|1729942_1731628_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	4.8e-279	91.3
WP_000598637.1\|1731624_1732344_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_000950413.1\|1732390_1732858_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
WP_017465874.1\|1732914_1733445_-	YehR family lipoprotein	NA	NA	NA	NA
WP_000703143.1\|1733616_1734075_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	2.4e-52	71.9
WP_000195330.1\|1734315_1736349_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6

DBSCAN-SWA_4

1910156 : 1917424

Morganella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000394197.1\|1910156_1910576_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
WP_017465541.1\|1910578_1911847_+	Y-family DNA polymerase	I6RSM4	Salmonella_phage	3.5e-226	91.7
WP_000208509.1\|1912301_1912514_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
WP_024131163.1\|1912524_1912713_+	hypothetical protein	NA	NA	NA	NA
WP_017465542.1\|1912972_1914184_-	porin OmpC	Q1MVN1	Enterobacteria_phage	4.4e-109	56.2
WP_000107439.1\|1914833_1915145_+	hypothetical protein	NA	NA	NA	NA
WP_000377042.1\|1915224_1915920_+	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	2.8e-07	27.1
WP_001157305.1\|1915993_1917424_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4

DBSCAN-SWA_5

2632067 : 2719083

106

Salmonella_phage(35.09%)

integrase,portal,terminase,lysis,holin,capsid,head,tRNA,tail

attL 2652718:2652734|attR 2718602:2718618

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_162487925.1\|2632067_2632586_+\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
WP_000272239.1\|2632582_2632690_-	hypothetical protein	NA	NA	NA	NA
WP_000460698.1\|2632895_2633342_+	DUF441 domain-containing protein	NA	NA	NA	NA
WP_000579793.1\|2633321_2634116_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000205345.1\|2634216_2635401_+	CynX/NimT family MFS transporter	NA	NA	NA	NA
WP_001222527.1\|2635519_2635867_+	DUF488 domain-containing protein	NA	NA	NA	NA
WP_000487129.1\|2635852_2636164_-	hypothetical protein	NA	NA	NA	NA
WP_000673492.1\|2636232_2636484_-	DUF333 domain-containing protein	NA	NA	NA	NA
WP_001589065.1\|2636679_2636778_+	YoaK family small membrane protein	NA	NA	NA	NA
WP_000512149.1\|2636916_2637165_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_001670462.1\|2637478_2638120_-	hypothetical protein	NA	NA	NA	NA
WP_000513733.1\|2638349_2638532_-	DUF1869 domain-containing protein	NA	NA	NA	NA
WP_001248993.1\|2638534_2638897_-	DUF1971 domain-containing protein	NA	NA	NA	NA
WP_000457190.1\|2639069_2639708_-	leucine efflux protein LeuE	NA	NA	NA	NA
WP_000617984.1\|2639904_2640450_-	chorismate mutase	NA	NA	NA	NA
WP_000208086.1\|2640778_2641027_+	hypothetical protein	NA	NA	NA	NA
WP_000190263.1\|2641281_2642130_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_001738208.1\|2642198_2642792_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000175797.1\|2642936_2643725_-	cryptic aminoglycoside nucleotidyltransferase ANT(3'')/ANT(9)	NA	NA	NA	NA
WP_001537483.1\|2643833_2644481_-	metal-binding protein ZinT	NA	NA	NA	NA
WP_001183699.1\|2644677_2645004_-	four-helix bundle copper-binding protein	NA	NA	NA	NA
WP_000456063.1\|2645197_2646331_+	mechanosensitive ion channel family protein	NA	NA	NA	NA
WP_000947465.1\|2646412_2647003_-	ATP-binding cassette domain-containing protein	NA	NA	NA	NA
WP_000950202.1\|2646996_2647794_-	ATP-binding cassette domain-containing protein	A0A2R8FG22	Brazilian_cedratvirus	9.6e-12	31.7
WP_000966649.1\|2647787_2648600_-	ABC transporter permease	NA	NA	NA	NA
WP_001672818.1\|2648589_2649564_-	ABC transporter permease	NA	NA	NA	NA
WP_000946088.1\|2649563_2651198_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000182479.1\|2651878_2652193_+	hypothetical protein	NA	NA	NA	NA
WP_000929980.1\|2652341_2652872_+	cytochrome b	A0A0U2QLA7	Escherichia_phage	2.8e-36	70.5
2652718:2652734	attL	NA	NA	NA	NA
WP_000761747.1\|2652954_2653998_-	exo-alpha-sialidase	NA	NA	NA	NA
WP_001218118.1\|2654336_2654804_-	Hsp20 family protein	NA	NA	NA	NA
WP_000927825.1\|2655001_2655229_-	hypothetical protein	NA	NA	NA	NA
WP_000758947.1\|2655428_2655554_-	lipoprotein	NA	NA	NA	NA
WP_000977725.1\|2655931_2656276_+	c-type lysozyme inhibitor	NA	NA	NA	NA
WP_000789470.1\|2657497_2658055_-	virulence membrane protein PagC	Q9LA63	Enterobacterial_phage	1.0e-15	33.0
WP_001535993.1\|2658866_2659130_+	virulence protein PagD	NA	NA	NA	NA
WP_001537306.1\|2659261_2659474_+	cold shock-like protein CspF	NA	NA	NA	NA
WP_001537478.1\|2659888_2660410_+	ricin-type beta-trefoil lectin domain protein	NA	NA	NA	NA
WP_000289208.1\|2660600_2660840_+	virulence protein MsgA	K7P6H1	Enterobacteria_phage	6.1e-31	84.8
WP_001033398.1\|2661329_2662118_+	hypothetical protein	NA	NA	NA	NA
WP_000917261.1\|2663102_2664227_-	type III secretion system effector SopF	NA	NA	NA	NA
WP_012218897.1\|2664674_2664887_-	isocitrate dehydrogenase	Q77Z09	Phage_21	2.5e-20	90.7
WP_000334552.1\|2665140_2665812_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	8.2e-81	59.9
WP_000481981.1\|2666131_2668234_-	type III secretion system effector E3 ubiquitin transferase SspH1	Q9MBL9	Phage_Gifsy-2	1.0e-28	48.5
WP_031609383.1\|2670459_2670660_+	PhoPQ-activated virulence protein PagK	NA	NA	NA	NA
WP_000143179.1\|2670756_2671341_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	1.7e-87	84.8
WP_058214537.1\|2671340_2673782_-\|tail	prophage tail fiber N-terminal domain-containing protein	A0A0K2FIZ6	Escherichia_phage	6.2e-86	61.7
WP_000178851.1\|2673835_2674078_-	hypothetical protein	NA	NA	NA	NA
WP_065680844.1\|2674116_2677479_-	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	80.7
WP_065314082.1\|2677541_2678189_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	6.0e-89	77.7
WP_000662740.1\|2678086_2678824_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	1.2e-128	84.6
WP_058112038.1\|2678830_2679529_-\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	6.0e-103	75.4
WP_000447370.1\|2679538_2679868_-\|tail	phage tail protein	A5LH39	Enterobacteria_phage	7.3e-43	71.3
WP_065680843.1\|2679870_2682912_-\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	4.4e-291	64.6
WP_010989052.1\|2682883_2683222_-\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	1.3e-31	62.4
WP_000479607.1\|2683218_2683614_-\|tail	phage minor tail protein G	A5LH36	Enterobacteria_phage	2.3e-30	56.5
WP_077951392.1\|2683664_2684411_-	Ig-like domain-containing protein	A0A291AWU6	Escherichia_phage	6.7e-100	77.3
WP_000033885.1\|2684418_2684820_-\|tail	tail protein	Q9G0F3	Phage_Gifsy-1	8.1e-52	100.0
WP_000677089.1\|2684816_2685395_-\|tail	phage tail protein	A5LH33	Enterobacteria_phage	3.7e-82	80.2
WP_065680841.1\|2685381_2685759_-\|tail	phage tail protein	A0A0K2FJB7	Enterobacteria_phage	1.2e-28	55.6
WP_065680840.1\|2685769_2686135_-	DNA-packaging protein FI	NA	NA	NA	NA
WP_000522566.1\|2686192_2687221_-\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.7e-114	61.1
WP_047588326.1\|2687275_2687623_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	5.4e-20	53.8
WP_065680839.1\|2687635_2689132_-	S49 family peptidase	A0A0K2FI53	Enterobacteria_phage	6.9e-96	51.8
WP_023237960.1\|2689121_2690702_-\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	4.3e-189	63.0
WP_039513171.1\|2690698_2690902_-	gpW family protein	K7PM10	Enterobacteria_phage	9.5e-17	72.3
WP_039513168.1\|2690885_2692817_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	1.8e-258	65.7
WP_001102153.1\|2692788_2693334_-\|terminase	terminase small subunit	A0A0U2S671	Escherichia_phage	1.5e-56	80.6
WP_000669693.1\|2693619_2694021_+	pre-peptidase C-terminal domain-containing protein	NA	NA	NA	NA
WP_001533543.1\|2694256_2694709_-\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	2.9e-66	92.7
WP_000984587.1\|2694726_2695179_-	lysozyme	A0A0M4R365	Salmonella_phage	5.1e-79	98.0
WP_001574216.1\|2695162_2695492_-\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	5.8e-56	100.0
WP_001110788.1\|2695767_2696454_+	PipA/GogA/GtgA family type III secretion system effector	Q9MBM2	Phage_Gifsy-1	5.1e-131	98.7
WP_000798705.1\|2696814_2697264_+	hypothetical protein	NA	NA	NA	NA
WP_001534733.1\|2697399_2697525_-	hypothetical protein	NA	NA	NA	NA
WP_001047630.1\|2697923_2698721_-	antitermination protein	A0A0M4S661	Salmonella_phage	4.0e-151	99.6
WP_001617856.1\|2698710_2698857_-	YlcG family protein	A0A0M5M7B2	Salmonella_phage	4.3e-19	97.9
WP_001096547.1\|2698853_2699465_-	recombination protein NinG	A0A0M4RU10	Salmonella_phage	4.2e-92	99.5
WP_000929790.1\|2699673_2700276_-	DUF1367 family protein	S4TTI0	Salmonella_phage	7.5e-110	99.5
WP_014343878.1\|2700310_2700559_-	hypothetical protein	A0A0U2C0C8	Salmonella_phage	1.6e-42	100.0
WP_001217669.1\|2700675_2700909_-	DinI family protein	H6WRY5	Salmonella_phage	5.6e-37	100.0
WP_000445792.1\|2701773_2702247_-	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	1.6e-67	80.1
WP_000065104.1\|2702246_2702771_-	ead/Ea22-like family protein	A0A220NQV2	Salmonella_phage	1.0e-91	100.0
WP_000113623.1\|2702767_2703115_-	DUF977 family protein	H6WRX9	Salmonella_phage	4.8e-53	90.4
WP_000800010.1\|2703125_2703875_-	ATP-binding protein	S4TNF5	Salmonella_phage	3.6e-138	99.6
WP_031235175.1\|2703877_2704861_-	replication protein	H6WRX7	Salmonella_phage	1.9e-163	100.0
WP_010835408.1\|2704945_2705320_-	hypothetical protein	S4TTD7	Salmonella_phage	1.9e-63	98.4
WP_051124477.1\|2705285_2705522_-	helix-turn-helix domain-containing protein	A0A0M4QX15	Salmonella_phage	2.6e-26	71.8
WP_015406390.1\|2705626_2706022_+	helix-turn-helix domain-containing protein	K7PM35	Enterobacteria_phage	3.5e-47	72.5
WP_023226317.1\|2706091_2707153_+	hypothetical protein	NA	NA	NA	NA
WP_038988958.1\|2707130_2707502_+	ASCH domain-containing protein	Q6SE87	Lactobacillus_prophage	1.5e-31	50.0
WP_001750115.1\|2707528_2707735_-	hypothetical protein	K7P7I0	Enterobacteria_phage	4.3e-17	69.1
WP_000917563.1\|2708132_2708291_+	hypothetical protein	H6WRX3	Salmonella_phage	2.4e-23	100.0
WP_022742800.1\|2708312_2708663_+	hypothetical protein	S4TSN6	Salmonella_phage	6.4e-61	98.3
WP_107919747.1\|2708789_2711501_+	exodeoxyribonuclease VIII	H6WRX1	Salmonella_phage	4.1e-155	44.7
WP_001126032.1\|2711493_2712324_+	recombination protein RecT	A0A1P8DTF2	Proteus_phage	1.0e-104	72.0
WP_001033921.1\|2712359_2712680_+	hypothetical protein	A0A222YY67	Escherichia_phage	3.6e-34	60.2
WP_058646427.1\|2712672_2713005_+	hypothetical protein	S4TNP2	Salmonella_phage	4.9e-10	63.6
WP_023239955.1\|2713001_2713505_+	hypothetical protein	A0A075B8H2	Enterobacteria_phage	6.6e-35	91.0
WP_039513135.1\|2713554_2713791_+	excisionase	NA	NA	NA	NA
WP_065680837.1\|2713780_2714923_+\|integrase	phage integrase Arm DNA-binding domain-containing protein	O21929	Phage_21	3.1e-173	80.0
WP_000444509.1\|2715036_2716287_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	6.7e-20	92.6
WP_024137237.1\|2716458_2717124_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_000825956.1\|2717120_2717450_+	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_000476067.1\|2717461_2717923_+	NUDIX hydrolase	NA	NA	NA	NA
WP_000004540.1\|2717976_2719083_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
2718602:2718618	attR	NA	NA	NA	NA

DBSCAN-SWA_6

4341474 : 4388547

Burkholderia_phage(36.36%)

plate,tail,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_017465897.1\|4341474_4342473_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_001039337.1\|4342560_4343871_-	conjugal transfer protein TraF	NA	NA	NA	NA
WP_000416271.1\|4344117_4344633_+	zinc uptake transcriptional repressor Zur	NA	NA	NA	NA
WP_001030592.1\|4344732_4344942_-	CsbD family protein	NA	NA	NA	NA
WP_001575282.1\|4344963_4345077_-	hypothetical protein	NA	NA	NA	NA
WP_001128112.1\|4345073_4346399_-	MATE family efflux transporter DinF	NA	NA	NA	NA
WP_000646079.1\|4346577_4347186_-	repressor LexA	Q9G0C2	Lactococcus_phage	1.0e-13	38.0
WP_000002900.1\|4347294_4347663_-	diacylglycerol kinase	NA	NA	NA	NA
WP_000017360.1\|4347833_4350254_+	glycerol-3-phosphate 1-O-acyltransferase PlsB	NA	NA	NA	NA
WP_000455249.1\|4350352_4351225_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
WP_000019230.1\|4351238_4351736_-	chorismate lyase	NA	NA	NA	NA
WP_000782497.1\|4351917_4352835_-	maltose operon protein MalM	NA	NA	NA	NA
WP_017465895.1\|4352998_4354357_-	maltoporin	NA	NA	NA	NA
WP_000179176.1\|4354445_4355555_-	maltose/maltodextrin ABC transporter ATP-binding protein MalK	Q6GZ03	Mycoplasma_phage	6.2e-17	47.2
WP_107919762.1\|4355916_4357107_+	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA
WP_000382570.1\|4357238_4358783_+	maltose ABC transporter permease MalF	NA	NA	NA	NA
WP_001252081.1\|4358797_4359688_+	maltose ABC transporter permease MalG	NA	NA	NA	NA
WP_000982749.1\|4359853_4360264_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA
WP_000750810.1\|4360406_4362503_-	YjbH domain-containing protein	NA	NA	NA	NA
WP_000977968.1\|4362502_4363240_-	capsule biosynthesis GfcC family protein	NA	NA	NA	NA
WP_126489750.1\|4363236_4363905_-	YjbF family lipoprotein	NA	NA	NA	NA
WP_001541297.1\|4363938_4364181_-	outer membrane protein	NA	NA	NA	NA
WP_000790028.1\|4364624_4366274_-	glucose-6-phosphate isomerase	NA	NA	NA	NA
WP_000136394.1\|4366618_4367968_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA
WP_000615248.1\|4368098_4368446_-	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.9e-21	51.5
WP_001226439.1\|4369022_4369310_+	membrane protein	Q6QIC8	Burkholderia_phage	3.0e-16	48.1
WP_017465893.1\|4369312_4369918_+	lytic transglycosylase domain-containing protein	Q5ZQZ1	Pseudomonas_phage	4.2e-60	59.9
WP_017465892.1\|4369930_4370245_+	hypothetical protein	Q6QIC4	Burkholderia_phage	1.1e-19	48.2
WP_000449433.1\|4370405_4370861_+	hypothetical protein	NA	NA	NA	NA
WP_000875314.1\|4370857_4371055_+	hypothetical protein	Q6QIB1	Burkholderia_phage	8.6e-07	52.9
WP_000729852.1\|4371044_4372472_+\|tail	phage tail sheath family protein	A4JWK5	Burkholderia_virus	1.1e-194	70.9
WP_000907494.1\|4372471_4372996_+\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	2.8e-68	69.5
WP_001003639.1\|4373047_4373365_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_001185654.1\|4373324_4373453_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_001262486.1\|4373549_4375904_+\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	4.0e-66	30.9
WP_017465891.1\|4375903_4376857_+\|tail	phage tail protein	A4JWL1	Burkholderia_virus	2.3e-36	50.8
WP_017465890.1\|4376856_4377066_+\|tail	tail protein X	A4JWL2	Burkholderia_virus	2.8e-16	58.8
WP_017465889.1\|4377053_4378097_+	phage late control D family protein	A4JWL3	Burkholderia_virus	6.5e-77	45.9
WP_017465888.1\|4378106_4378829_+\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	3.9e-12	42.0
WP_000593184.1\|4379156_4379519_+	GtrA family protein	U5P0S6	Shigella_phage	9.6e-44	70.8
WP_000703628.1\|4379515_4380445_+	glycosyltransferase family 2 protein	S5FKN0	Shigella_phage	7.9e-151	84.1
WP_001095011.1\|4380444_4381992_+	membrane protein	B9UDL6	Salmonella_phage	1.9e-48	29.9
WP_065680873.1\|4382155_4382515_+	GPW/gp25 family protein	Q6QIA0	Burkholderia_phage	3.6e-35	64.2
WP_000951730.1\|4382505_4383621_+\|plate	baseplate J/gp47 family protein	Q6QI99	Burkholderia_phage	3.1e-101	52.2
WP_000359504.1\|4383613_4384246_+\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	1.1e-23	56.4
WP_017465887.1\|4384248_4386018_+\|tail	tail fiber protein	A0A0M3ULH6	Salmonella_phage	3.2e-52	40.5
WP_017465886.1\|4386022_4386628_+	DUF4376 domain-containing protein	NA	NA	NA	NA
WP_017465885.1\|4386624_4387080_+	hypothetical protein	NA	NA	NA	NA
WP_022544687.1\|4387818_4388547_+	hypothetical protein	A0A077SLK3	Escherichia_phage	7.3e-35	37.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP041172

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

37217 : 66330

Escherichia_phage(42.86%)

transposase,integrase

attL 34551:34566|attR 39471:39486

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
34551:34566	attL	NA	NA	NA	NA
WP_000543934.1\|37217_38228_-\|integrase	tyrosine-type recombinase/integrase	A0A0K0N6I5	Gordonia_phage	3.1e-07	31.9
WP_000949433.1\|38230_38767_-	hypothetical protein	NA	NA	NA	NA
WP_000575657.1\|39065_39347_-	hypothetical protein	NA	NA	NA	NA
WP_000278322.1\|39616_40219_+	hypothetical protein	NA	NA	NA	NA
39471:39486	attR	NA	NA	NA	NA
WP_001326394.1\|40857_41298_-	hypothetical protein	NA	NA	NA	NA
WP_001257735.1\|41269_45523_-	RHS repeat protein	A0A2H4JHK7	uncultured_Caudovirales_phage	1.1e-18	47.6
WP_000988731.1\|45655_46381_-	hypothetical protein	NA	NA	NA	NA
WP_000868820.1\|46494_46869_-	hypothetical protein	NA	NA	NA	NA
WP_000338626.1\|46989_47106_-	hypothetical protein	NA	NA	NA	NA
WP_000427623.1\|47511_48516_-\|transposase	IS110-like element IS4321 family transposase	NA	NA	NA	NA
WP_000414383.1\|48615_49050_-	mercury resistance transcriptional regulator MerR	NA	NA	NA	NA
WP_001294666.1\|49121_49472_+	mercuric transport protein MerT	NA	NA	NA	NA
WP_000732290.1\|49487_49763_+	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_000149288.1\|49834_51520_+	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	1.1e-38	27.9
WP_000761850.1\|51534_52173_+	organomercurial lyase MerB	NA	NA	NA	NA
WP_000995361.1\|52284_52650_+	mercury resistance co-regulator MerD	NA	NA	NA	NA
WP_001087810.1\|52646_52883_+	broad-spectrum mercury transporter MerE	NA	NA	NA	NA
WP_001276635.1\|52879_53869_+	DUF3330 domain-containing protein	NA	NA	NA	NA
WP_001067858.1\|54078_54783_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_001067855.1\|57021_57726_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001300294.1\|59115_59784_-	EAL domain-containing protein	NA	NA	NA	NA
WP_000993386.1\|59819_60056_-	broad-spectrum mercury transporter MerE	NA	NA	NA	NA
WP_001277456.1\|60052_60415_-	mercury resistance co-regulator MerD	NA	NA	NA	NA
WP_000027057.1\|61090_61951_-	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_001067855.1\|62331_63036_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001044210.1\|63041_63182_+	hypothetical protein	NA	NA	NA	NA
WP_001366550.1\|63667_64405_+	recombinase family protein	NA	NA	NA	NA
WP_000743213.1\|64401_64626_+	hypothetical protein	NA	NA	NA	NA
WP_001120888.1\|64836_66330_+\|transposase	IS91 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

101535 : 147389

Salmonella_phage(30.0%)

transposase,integrase

attL 121391:121442|attR 152196:152247

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000608644.1\|101535_102798_+\|transposase	IS1380-like element ISEc9 family transposase	A0A1B0VDR3	Salmonella_phage	1.3e-39	100.0
WP_000976514.1\|103121_104267_+	class C beta-lactamase CMY-2	NA	NA	NA	NA
WP_001221666.1\|104360_104894_+	lipocalin family protein	A0A1W6JNX6	Morganella_phage	6.1e-47	54.1
WP_000118520.1\|104890_105208_-	quaternary ammonium compound efflux SMR transporter SugE	NA	NA	NA	NA
WP_000606835.1\|105935_111422_+	DUF4165 domain-containing protein	NA	NA	NA	NA
WP_001259346.1\|111570_112278_+	DsbC family protein	NA	NA	NA	NA
WP_000637384.1\|112274_114722_+	type IV secretion system protein TraC	NA	NA	NA	NA
WP_000351984.1\|114736_115054_+	hypothetical protein	NA	NA	NA	NA
WP_001010740.1\|115050_115581_+	S26 family signal peptidase	NA	NA	NA	NA
WP_001447719.1\|115543_116809_+	conjugal transfer protein TraW	NA	NA	NA	NA
WP_000575345.1\|116805_117477_+	EAL domain-containing protein	NA	NA	NA	NA
WP_000983282.1\|117473_118481_+	TraU family protein	NA	NA	NA	NA
121391:121442	attL	NA	NA	NA	NA
WP_001067855.1\|121442_122147_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001516695.1\|122903_123560_+	quinolone resistance pentapeptide repeat protein QnrS1	NA	NA	NA	NA
WP_001493761.1\|124339_125731_-\|transposase	ISKra4-like element ISKpn19 family transposase	NA	NA	NA	NA
WP_001493762.1\|125767_126340_-	recombinase family protein	M9Q1K0	Clostridium_phage	3.4e-19	39.4
WP_012477564.1\|126476_127067_-	plasmid pRiA4b ORF-3 family protein	NA	NA	NA	NA
WP_072756842.1\|127190_130178_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	1.5e-296	53.7
WP_000470623.1\|130345_130981_+	recombinase family protein	NA	NA	NA	NA
WP_071686688.1\|131008_131845_-	S-formylglutathione hydrolase	NA	NA	NA	NA
WP_000235177.1\|131910_132309_-	VOC family protein	NA	NA	NA	NA
WP_000842086.1\|132350_133460_-	S-(hydroxymethyl)glutathione dehydrogenase	E3SJ82	Synechococcus_phage	3.7e-30	28.1
WP_001141270.1\|133490_133766_-	formaldehyde-responsive transcriptional repressor FrmR	NA	NA	NA	NA
WP_001161490.1\|135421_135982_-	recombinase family protein	A0A1B0V7I5	Salmonella_phage	1.1e-59	100.0
WP_000130000.1\|136181_136487_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000184001.1\|136497_137703_-	chromate efflux transporter	NA	NA	NA	NA
WP_000376616.1\|137858_138062_-	hypothetical protein	NA	NA	NA	NA
WP_000259031.1\|138189_139029_-	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000679427.1\|139022_139370_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_001206356.1\|139533_140325_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
WP_001336345.1\|140330_140621_-	DUF1010 domain-containing protein	NA	NA	NA	NA
WP_001083725.1\|140732_141230_-	trimethoprim-resistant dihydrofolate reductase DfrA12	A0A0A0PL85	Bacillus_phage	7.5e-23	40.9
WP_001747814.1\|142254_143787_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_001470701.1\|144043_144412_+	mechanosensitive ion channel	NA	NA	NA	NA
WP_109638756.1\|144439_145981_-	fluoroquinolone efflux MFS transporter QepA8	NA	NA	NA	NA
WP_000845039.1\|146375_147389_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
152196:152247	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP041171

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP041172

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection