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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP041153 Shewanella marisflavi strain ECSMB14101 chromosome, complete genome 1 crisprs DEDDh,csa3,cas3,WYL,DinG,PrimPol 0 4 4 0

Results visualization

1. NZ_CP041153
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP041153_1 4076630-4076978 Orphan NA
5 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP041153_1 1.1|4076667|23|NZ_CP041153|CRT 4076667-4076689 23 NZ_CP040459 Pseudomonas stutzeri strain PheN2 plasmid unnamed, complete sequence 92524-92546 2 0.913
NZ_CP041153_1 1.1|4076667|23|NZ_CP041153|CRT 4076667-4076689 23 NZ_CP019603 Croceicoccus marinus strain E4A9 plasmid pCME4A9I, complete sequence 644267-644289 2 0.913
NZ_CP041153_1 1.2|4076727|23|NZ_CP041153|CRT 4076727-4076749 23 NZ_CP040459 Pseudomonas stutzeri strain PheN2 plasmid unnamed, complete sequence 92524-92546 2 0.913
NZ_CP041153_1 1.3|4076787|23|NZ_CP041153|CRT 4076787-4076809 23 NZ_CP045351 Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence 47355-47377 2 0.913
NZ_CP041153_1 1.5|4076919|23|NZ_CP041153|CRT 4076919-4076941 23 MK511002 Pseudomonas phage CF57, partial genome 45972-45994 2 0.913
NZ_CP041153_1 1.5|4076919|23|NZ_CP041153|CRT 4076919-4076941 23 MK511003 Pseudomonas phage CF65, partial genome 45959-45981 2 0.913
NZ_CP041153_1 1.5|4076919|23|NZ_CP041153|CRT 4076919-4076941 23 MK819239 Pseudomonas phage vB_PaeP_YA3, complete genome 29949-29971 2 0.913
NZ_CP041153_1 1.5|4076919|23|NZ_CP041153|CRT 4076919-4076941 23 MK511022 Pseudomonas phage CF74, partial genome 41907-41929 2 0.913
NZ_CP041153_1 1.5|4076919|23|NZ_CP041153|CRT 4076919-4076941 23 MK511005 Pseudomonas phage CF81, partial genome 46064-46086 2 0.913
NZ_CP041153_1 1.5|4076919|23|NZ_CP041153|CRT 4076919-4076941 23 NC_023575 Pseudomonas phage vB_PaeP_Tr60_Ab31 32237-32259 2 0.913
NZ_CP041153_1 1.5|4076919|23|NZ_CP041153|CRT 4076919-4076941 23 NC_030929 Pseudomonas phage JBD44, complete genome 42522-42544 2 0.913
NZ_CP041153_1 1.5|4076919|23|NZ_CP041153|CRT 4076919-4076941 23 KX607101 Acidianus two-tailed virus 2 isolate ATV2, complete genome 31635-31657 2 0.913
NZ_CP041153_1 1.5|4076919|23|NZ_CP041153|CRT 4076919-4076941 23 KM389463 UNVERIFIED: Pseudomonas phage JBD94b clone contig00001 genomic sequence 38330-38352 2 0.913
NZ_CP041153_1 1.5|4076919|23|NZ_CP041153|CRT 4076919-4076941 23 AJ888457 Acidianus two-tailed virus, complete viral genome 34588-34610 2 0.913
NZ_CP041153_1 1.5|4076919|23|NZ_CP041153|CRT 4076919-4076941 23 KX607102 Acidianus two-tailed virus variant 1 isolate ATV.v1, complete genome 33094-33116 2 0.913
NZ_CP041153_1 1.5|4076919|23|NZ_CP041153|CRT 4076919-4076941 23 NC_028657 Pseudomonas phage YMC11/02/R656, complete genome 5407-5429 2 0.913
NZ_CP041153_1 1.2|4076727|23|NZ_CP041153|CRT 4076727-4076749 23 NC_010510 Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, complete sequence 43349-43371 3 0.87
NZ_CP041153_1 1.2|4076727|23|NZ_CP041153|CRT 4076727-4076749 23 NZ_CP029540 Aquitalea sp. USM4 plasmid unnamed, complete sequence 27544-27566 3 0.87
NZ_CP041153_1 1.1|4076667|23|NZ_CP041153|CRT 4076667-4076689 23 NZ_CP029356 Azospirillum sp. CFH 70021 plasmid unnamed1 475623-475645 4 0.826
NZ_CP041153_1 1.3|4076787|23|NZ_CP041153|CRT 4076787-4076809 23 EF523948 Burkholderia phage BcepGomr, complete genome 30515-30537 4 0.826
NZ_CP041153_1 1.5|4076919|23|NZ_CP041153|CRT 4076919-4076941 23 NZ_CP029834 Azospirillum ramasamyi strain M2T2B2 plasmid unnamed4, complete sequence 24906-24928 4 0.826

1. spacer 1.1|4076667|23|NZ_CP041153|CRT matches to NZ_CP040459 (Pseudomonas stutzeri strain PheN2 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.913

ttcctgttcggcctgttctgcag	CRISPR spacer
agcctgttcggcctgttctgcag	Protospacer
  *********************

2. spacer 1.1|4076667|23|NZ_CP041153|CRT matches to NZ_CP019603 (Croceicoccus marinus strain E4A9 plasmid pCME4A9I, complete sequence) position: , mismatch: 2, identity: 0.913

ttcctgttcggcctgttctgcag	CRISPR spacer
ttcctgtccggcctgttcggcag	Protospacer
*******.********** ****

3. spacer 1.2|4076727|23|NZ_CP041153|CRT matches to NZ_CP040459 (Pseudomonas stutzeri strain PheN2 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.913

cgcctgttcggcctgctctgcag	CRISPR spacer
agcctgttcggcctgttctgcag	Protospacer
 **************.*******

4. spacer 1.3|4076787|23|NZ_CP041153|CRT matches to NZ_CP045351 (Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence) position: , mismatch: 2, identity: 0.913

tgcctgctcggcttgctctgctt	CRISPR spacer
tgcctgctgggcttgctctgcgt	Protospacer
******** ************ *

5. spacer 1.5|4076919|23|NZ_CP041153|CRT matches to MK511002 (Pseudomonas phage CF57, partial genome) position: , mismatch: 2, identity: 0.913

ttcctgttcggcctgctctgctt	CRISPR spacer
ttccagttcggcctgctcggctt	Protospacer
**** ************* ****

6. spacer 1.5|4076919|23|NZ_CP041153|CRT matches to MK511003 (Pseudomonas phage CF65, partial genome) position: , mismatch: 2, identity: 0.913

ttcctgttcggcctgctctgctt	CRISPR spacer
ttccagttcggcctgctcggctt	Protospacer
**** ************* ****

7. spacer 1.5|4076919|23|NZ_CP041153|CRT matches to MK819239 (Pseudomonas phage vB_PaeP_YA3, complete genome) position: , mismatch: 2, identity: 0.913

ttcctgttcggcctgctctgctt	CRISPR spacer
ttccagttcggcctgctcggctt	Protospacer
**** ************* ****

8. spacer 1.5|4076919|23|NZ_CP041153|CRT matches to MK511022 (Pseudomonas phage CF74, partial genome) position: , mismatch: 2, identity: 0.913

ttcctgttcggcctgctctgctt	CRISPR spacer
ttccagttcggcctgctcggctt	Protospacer
**** ************* ****

9. spacer 1.5|4076919|23|NZ_CP041153|CRT matches to MK511005 (Pseudomonas phage CF81, partial genome) position: , mismatch: 2, identity: 0.913

ttcctgttcggcctgctctgctt	CRISPR spacer
ttccagttcggcctgctcggctt	Protospacer
**** ************* ****

10. spacer 1.5|4076919|23|NZ_CP041153|CRT matches to NC_023575 (Pseudomonas phage vB_PaeP_Tr60_Ab31) position: , mismatch: 2, identity: 0.913

ttcctgttcggcctgctctgctt	CRISPR spacer
ttccagttcggcctgctcggctt	Protospacer
**** ************* ****

11. spacer 1.5|4076919|23|NZ_CP041153|CRT matches to NC_030929 (Pseudomonas phage JBD44, complete genome) position: , mismatch: 2, identity: 0.913

ttcctgttcggcctgctctgctt	CRISPR spacer
ttccagttcggcctgctcggctt	Protospacer
**** ************* ****

12. spacer 1.5|4076919|23|NZ_CP041153|CRT matches to KX607101 (Acidianus two-tailed virus 2 isolate ATV2, complete genome) position: , mismatch: 2, identity: 0.913

ttcctgttcggcctgctctgctt	CRISPR spacer
tacctgttctgcctgctctgctt	Protospacer
* ******* *************

13. spacer 1.5|4076919|23|NZ_CP041153|CRT matches to KM389463 (UNVERIFIED: Pseudomonas phage JBD94b clone contig00001 genomic sequence) position: , mismatch: 2, identity: 0.913

ttcctgttcggcctgctctgctt	CRISPR spacer
ttccagttcggcctgctcggctt	Protospacer
**** ************* ****

14. spacer 1.5|4076919|23|NZ_CP041153|CRT matches to AJ888457 (Acidianus two-tailed virus, complete viral genome) position: , mismatch: 2, identity: 0.913

ttcctgttcggcctgctctgctt	CRISPR spacer
tacctgttctgcctgctctgctt	Protospacer
* ******* *************

15. spacer 1.5|4076919|23|NZ_CP041153|CRT matches to KX607102 (Acidianus two-tailed virus variant 1 isolate ATV.v1, complete genome) position: , mismatch: 2, identity: 0.913

ttcctgttcggcctgctctgctt	CRISPR spacer
tacctgttctgcctgctctgctt	Protospacer
* ******* *************

16. spacer 1.5|4076919|23|NZ_CP041153|CRT matches to NC_028657 (Pseudomonas phage YMC11/02/R656, complete genome) position: , mismatch: 2, identity: 0.913

ttcctgttcggcctgctctgctt	CRISPR spacer
ttccagttcggcctgctcggctt	Protospacer
**** ************* ****

17. spacer 1.2|4076727|23|NZ_CP041153|CRT matches to NC_010510 (Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, complete sequence) position: , mismatch: 3, identity: 0.87

cgcctgttcggcctgctctgcag	CRISPR spacer
cgcctgttcggcatgctctgccc	Protospacer
************ ********  

18. spacer 1.2|4076727|23|NZ_CP041153|CRT matches to NZ_CP029540 (Aquitalea sp. USM4 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.87

cgcctgttcggcctgctctgcag	CRISPR spacer
cgcctgttctgcctgctctgcgc	Protospacer
********* ***********. 

19. spacer 1.1|4076667|23|NZ_CP041153|CRT matches to NZ_CP029356 (Azospirillum sp. CFH 70021 plasmid unnamed1) position: , mismatch: 4, identity: 0.826

ttcctgttcggcctgttctgcag	CRISPR spacer
gtcctgttcggcctgttctggct	Protospacer
 *******************   

20. spacer 1.3|4076787|23|NZ_CP041153|CRT matches to EF523948 (Burkholderia phage BcepGomr, complete genome) position: , mismatch: 4, identity: 0.826

tgcctgctcggcttgctctgctt	CRISPR spacer
ctcctgctcggcttgctctgccg	Protospacer
. *******************. 

21. spacer 1.5|4076919|23|NZ_CP041153|CRT matches to NZ_CP029834 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed4, complete sequence) position: , mismatch: 4, identity: 0.826

ttcctgttcggcctgctctgctt	CRISPR spacer
gtcctgttcggcctgctctggcg	Protospacer
 ******************* . 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 2073220 : 2084277 12 uncultured_Caudovirales_phage(37.5%) tRNA NA
DBSCAN-SWA_2 2978641 : 2989481 8 uncultured_Mediterranean_phage(33.33%) tRNA NA
DBSCAN-SWA_3 3010561 : 3019700 8 Staphylococcus_phage(42.86%) NA NA
DBSCAN-SWA_4 3244743 : 3254903 7 Moraxella_phage(16.67%) tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage