CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP041011	Salmonella enterica strain FDAARGOS_765 chromosome, complete genome	1 crisprs	cas3,DEDDh,DinG,csa3,PD-DExK	3	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP041011_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041011_1

1541626-1542207

Orphan

Consensus_repeat	Method
AACCNNCTGNCCAGCCTGCCGGCGCTGCCGNCAGGACTANNG	CRT

9 spacers

The CRISPR arrays of NZ_CP041011_1

>merge|NZ_CP041011|1|1541626-1542207|CRT
AATAATCTGACCCACCTGTCGACGTTGCCGGCAGGACTACAGGAGCTGATTTTCGCTGGTAACCAGCTGCCCAGCCTGCCGGCGCTGCCGTCAGGACTAAGGGAGCTGATTGTTGTTGAGAGCCCGCTGACCAGCCTGCCGGAGCTACCGTCAGGACTATGTAAGCTGTGGGCCTTTAATAACCAACTGGCCAGCCTGCCGGCGCTGCCGCCAGGACTACGGGAGCTGTCGGTAGATGGTAACCTGCTGCCCAGCCTGCCGGCGCTGCCGTCAGGACTACAGTCGCTGTCGGCCTCTCATAACCAGATGGCCAGCCTGCCGACGCTGCCGCCAGGACTAGAGGAGCTGTCGGTAGATGATAACCAGCTGGCCAGCCTGCCAGCGCTGCCGCTAAGACTACAGAAACTGTCGGTATCTCATAACCTACTGACCCACCTGTCAGCGCTGCCGCCAGGACTACAGTCGCTATGGGCCACTAATAACCGACTGACCAGCCTCTCGGCGCTGCCGCCAGGACTAGAGGAGCTGGTGGTGTTTGATAACCAGCTGCCCAGCCTGCCGGCGCTGCCGCCAGGACTACGG

>NZ_CP041011|1|1|1541626-1542207|CRT
AATAATCTGACCCACCTGTCGACGTTGCCGGCAGGACTACAG	GAGCTGATTTTCGCTGGT
AACCAGCTGCCCAGCCTGCCGGCGCTGCCGTCAGGACTAAGG	GAGCTGATTGTTGTTGAG
AGCCCGCTGACCAGCCTGCCGGAGCTACCGTCAGGACTATGT	AAGCTGTGGGCCTTTAAT
AACCAACTGGCCAGCCTGCCGGCGCTGCCGCCAGGACTACGG	GAGCTGTCGGTAGATGGT
AACCTGCTGCCCAGCCTGCCGGCGCTGCCGTCAGGACTACAG	TCGCTGTCGGCCTCTCAT
AACCAGATGGCCAGCCTGCCGACGCTGCCGCCAGGACTAGAG	GAGCTGTCGGTAGATGAT
AACCAGCTGGCCAGCCTGCCAGCGCTGCCGCTAAGACTACAG	AAACTGTCGGTATCTCAT
AACCTACTGACCCACCTGTCAGCGCTGCCGCCAGGACTACAG	TCGCTATGGGCCACTAAT
AACCGACTGACCAGCCTCTCGGCGCTGCCGCCAGGACTAGAG	GAGCTGGTGGTGTTTGAT
AACCAGCTGCCCAGCCTGCCGGCGCTGCCGCCAGGACTACGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041011.1\|WP_000598912.1\|1534169_1534925_-\|DgsA-anti-repressor-MtfA	unknown	unknown	gnl\|CDD\|185308
NZ_CP041011.1\|WP_001022120.1\|1546386_1547364_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270265
NZ_CP041011.1\|WP_012210038.1\|1523746_1524667_+\|drug/metabolite-exporter-YedA	unknown	unknown	gnl\|CDD\|183067
NZ_CP041011.1\|WP_077916553.1\|1533598_1533787_-\|DUF4102-domain-containing-protein	unknown	unknown	gnl\|CDD\|379139
NZ_CP041011.1\|WP_000280762.1\|1536752_1537523_-\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|225567
NZ_CP041011.1\|WP_071841344.1\|1529611_1529800_-\|cold-shock-protein	unknown	unknown	unknown
NZ_CP041011.1\|WP_000786010.1\|1524655_1525126_-\|very-short-patch-repair-endonuclease	unknown	unknown	gnl\|CDD\|226250
NZ_CP041011.1\|WP_038395693.1\|1525106_1526537_-\|DNA-cytosine-methyltransferase	unknown	unknown	gnl\|CDD\|236696
NZ_CP041011.1\|WP_140197987.1\|1562635_1567489_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|99707
NZ_CP041011.1\|WP_140197980.1\|1538654_1540145_-\|type-III-secretion-effector-GogB	unknown	unknown	gnl\|CDD\|237954
NZ_CP041011.1\|WP_038395677.1\|1549906_1551403_+\|C69-family-dipeptidase	unknown	unknown	gnl\|CDD\|335383
NZ_CP041011.1\|WP_000829183.1\|1543653_1544679_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361
NZ_CP041011.1\|WP_140197982.1\|1544666_1546373_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|224099
NZ_CP041011.1\|WP_072159169.1\|1527382_1527694_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041011.1\|WP_079799232.1\|1529810_1530023_-\|cold-shock-protein	unknown	unknown	gnl\|CDD\|224197
NZ_CP041011.1\|WP_140197986.1\|1560418_1562545_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041011.1\|WP_140197984.1\|1552487_1553171_+\|integrase-arm-type-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|170049
NZ_CP041011.1\|WP_000400306.1\|1553840_1555295_+\|AMP-nucleosidase	unknown	unknown	gnl\|CDD\|236222
NZ_CP041011.1\|WP_140197983.1\|1547856_1548956_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|372671
NZ_CP041011.1\|WP_140197985.1\|1556442_1560426_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP041011.1\|WP_000598912.1\|1534169_1534925_-\|DgsA-anti-repressor-MtfA	gnl\|CDD\|185308	PRK15410, PRK15410, DgsA anti-repressor MtfA; Provisional.	0
NZ_CP041011.1\|WP_000829183.1\|1543653_1544679_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	9.20205e-132
NZ_CP041011.1\|WP_012210038.1\|1523746_1524667_+\|drug/metabolite-exporter-YedA	gnl\|CDD\|183067	PRK11272, PRK11272, putative DMT superfamily transporter inner membrane protein; Provisional.	2.24056e-165
NZ_CP041011.1\|WP_140197982.1\|1544666_1546373_-\|ABC-transporter-permease-subunit	gnl\|CDD\|224099	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism].	1.05023e-90
NZ_CP041011.1\|WP_000280762.1\|1536752_1537523_-\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|225567	COG3023, ampD, N-acetyl-anhydromuramyl-L-alanine amidase [Cell envelope biogenesis, outer membrane].	3.88173e-98
NZ_CP041011.1\|WP_077916553.1\|1533598_1533787_-\|DUF4102-domain-containing-protein	gnl\|CDD\|379139	pfam13356, Arm-DNA-bind_3, Arm DNA-binding domain. This DNA-binding domain is found at the N-terminus of a wide variety of phage integrase proteins.	3.30213e-11
NZ_CP041011.1\|WP_000786010.1\|1524655_1525126_-\|very-short-patch-repair-endonuclease	gnl\|CDD\|226250	COG3727, Vsr, DNA G:T-mismatch repair endonuclease [DNA replication, recombination, and repair].	6.95835e-90
NZ_CP041011.1\|WP_038395693.1\|1525106_1526537_-\|DNA-cytosine-methyltransferase	gnl\|CDD\|236696	PRK10458, PRK10458, DNA cytosine methylase; Provisional.	0
NZ_CP041011.1\|WP_140197987.1\|1562635_1567489_-\|ATP-binding-protein	gnl\|CDD\|99707	cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.	8.10237e-05
NZ_CP041011.1\|WP_140197980.1\|1538654_1540145_-\|type-III-secretion-effector-GogB	gnl\|CDD\|237954	PRK15386, PRK15386, type III secretion effector GogB.	0
NZ_CP041011.1\|WP_038395677.1\|1549906_1551403_+\|C69-family-dipeptidase	gnl\|CDD\|335383	pfam03577, Peptidase_C69, Peptidase family C69.	3.96427e-137
NZ_CP041011.1\|WP_001022120.1\|1546386_1547364_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270265	cd13547, PBP2_Fbp_like_2, Substrate binding domain of an uncharacterized ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily. The periplasmic iron binding protein plays an essential role in the iron uptake pathway of Gram-negative pathogenic bacteria from the Pasteurellaceae and Neisseriaceae families and is critical for survival of these pathogens within the host. This periplasmic domain (Fbp) has high affinity for ferric iron and serves as the primary receptor for transport. After binding iron with high affinity, Fbp interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ferric iron-binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	4.70253e-108
NZ_CP041011.1\|WP_079799232.1\|1529810_1530023_-\|cold-shock-protein	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	5.98558e-38
NZ_CP041011.1\|WP_140197984.1\|1552487_1553171_+\|integrase-arm-type-DNA-binding-domain-containing-protein	gnl\|CDD\|170049	PRK09692, PRK09692, integrase; Provisional.	1.68389e-28
NZ_CP041011.1\|WP_000400306.1\|1553840_1555295_+\|AMP-nucleosidase	gnl\|CDD\|236222	PRK08292, PRK08292, AMP nucleosidase; Provisional.	0
NZ_CP041011.1\|WP_140197983.1\|1547856_1548956_+\|IS3-family-transposase	gnl\|CDD\|372671	pfam13683, rve_3, Integrase core domain.	4.91544e-27

>NZ_CP041011.1|WP_140197980.1|1538654_1540145_-|type-III-secretion-effector-GogB
MIYILNKCMKIGSQPVTLQYAYTGNEATSNLELLNKWRIESPDIEREERNSIYNKIIEANHTGSLSITARHVTSIPVFPDNLSELTLSSCYTLESIPNLPDGLKSLTISENKNIKISYFPDSLESLSIDMQAYEENYSFPTLPYGLKSFTACYGKFLPPLPPHLSSLSLQNFSEILCAELPSGLDKLDLQSCPFLPLMKMLPEGLKELSIELIRTVSDTVIDDILPEKLKKLSINFCDNIKLPVKLPANLKSINLSSMTPVVWEIPTCNLPAHIDISTDGYVKLNPEFLTRSDITFSHKSAGDALSFQPGDVVYGLCKARDRVSTLVNSLYSFSKKDIIIQNTLTDAVWDRKNRAVFNKDEKIAERLNDVQRGIFFREYLSQHQKYNITEDKYSDLSNEECWIKTSKAGLEFQTRLREQSVIFVVDNLVDAISDIANKKGKHGNAITAHELRWVYRNRHDDLVKQNVKFFLNGKAVSHEDVFSLVGWEQYKPKNGV
>NZ_CP041011.1|WP_000280762.1|1536752_1537523_-|N-acetylmuramoyl-L-alanine-amidase
MYLIDYNSYRSVKGFNRRVRFLVMHYTSIDFKASIAALTGASVSAHYLVPDPSEKTYIAAGFKDMRIFNLVDENERAWHAGVSSWAGRSNLNDTSIGIEMVNLASDNNGVFVFPPYNPVLIDAIKELAANILQRYPDITPVNVVGHSDIAPGRKSDPGAAFPWKELYDAGIGAWYEESTMQHYLKQFSKSVPSKTEIVAKLKAYGYGISDAGTEIGYKNLIRTFQLHFRQKNYDGVADAETAAILYALVDKYFPAK
>NZ_CP041011.1|WP_000598912.1|1534169_1534925_-|DgsA-anti-repressor-MtfA
MIKWPWKAQEITQNADWLWDDALAIPLLVNLTAQEQARLIALAERFLQQKRLVALQGVELDSLKSARIALIFCLPILELGLEWLDGFHEVLIYPAPFVVDDEWEDDIGLVHSQRVVQSGQSWQQGPIILNWLDIQDSFDASGFNLIIHEVAHKLDMRNGDRASGIPFIPLRDVAGWEHDLHAAMNNIQDEIDLVGENAASIDAYAATDPAECFAVLSEYFFSAPELFAPRFPALWQRFCQFYRQDPSQRLR
>NZ_CP041011.1|WP_077916553.1|1533598_1533787_-|DUF4102-domain-containing-protein
MALTDTAIRKIKPTDKSFKLTNSSGLYLLIKSNGLKLWYIKYRILGKEKKQAFWSLTGCFPV
>NZ_CP041011.1|WP_079799232.1|1529810_1530023_-|cold-shock-protein
MTTKITGSVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNDFRTLNENQEVEFSVEQGPKGPSAVDVVAL
>NZ_CP041011.1|WP_071841344.1|1529611_1529800_-|cold-shock-protein
MTNKIHFRCPCCHGSQYRTSTFDVTEQNPFGAKCIFCKSTMITFDNVALYMRSGQIPPDFRK
>NZ_CP041011.1|WP_072159169.1|1527382_1527694_-|hypothetical-protein
MSTREEKATRSMGGKLALWVFYTFCVYFIWVMARYVWLISVIQVEPVLGPNGAPVSVTEKWLNALSLGVVWLILGSIAWYTRPRKGLTFPSDTKPEMRNQAGM
>NZ_CP041011.1|WP_038395693.1|1525106_1526537_-|DNA-cytosine-methyltransferase
MQENLSVTHARNFIADGAGSEVQAMLSQLLEIYDVKTLVAHLNGLGEHHWSPAILKRVMMNTAWHRLSDNEFASLKTLLPTPPAHHPHYAFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANYFCDPLEHRFNEDIRDITLSHREGVGDDEAAEHIRQYIPQHDVLLAGFPCQPFSLAGVSKKNALGRAHGFACETQGTLFFDVVRIIDARRPALFVLENVKNLKSHDQGNTFRIIMQTLDELGYDVADAADNGPDDPKIIDGQHFLPQHRERIVLVGFRRDLNLKTDFTLRNIARCYPPRRPTLAELLEPVVEAKYILTPVLWKYLYCYAKKHQARGNGFGYGMVYPDNPESVARTLSARYYKDGAEILIDRGWDMAKGEVNFDDAGNQQHRPRRLTPRECARLMGFETPQTYQFRIPVSDTQAYRQFGNSVVVPVFAAVAKLLETKIHQAVALRQREAVDGGRSR
>NZ_CP041011.1|WP_000786010.1|1524655_1525126_-|very-short-patch-repair-endonuclease
MADVHDKATRSKNMRAIATRDTAIEKRLASLLTSQGITFHTQDATLPGKPDFVVNDYDCVIFTHGCFWHHHHCYLFNVPATRTAFWLEKIGKNVERDERDIQRLQALGWRVLIVWECALRGRAKLSDAALAERLEEWICGGGASAQIDTQGIHLLS
>NZ_CP041011.1|WP_012210038.1|1523746_1524667_+|drug/metabolite-exporter-YedA
MRFRQLLPLFGALFALYIIWGSTYFVIRIGVESWPPLMMAGIRFLSAGIVLMAFLLLRGEKLPPLRQTINAVLIGLLLLAVGNGLVTVAEHQNVPSGIAAVVVATVPLFTLCFSYFFGIKTRKLEWAGIAIGLAGIILLNSGGNLSGNPWGAILILIGSMSWAFGSVYGSRIALPTGMMAGAIEMLAAGVILLCAAFLSGEKITTLPGLSGFMAVGYLALFGSIIAINAYMYLIRNVSPALATSYAYVNPVVAVLLGTGLGGEKLSPVEWAALGVIVFAVVLVTLGKYLFPAGAVVTPCKTEGSRQ
>NZ_CP041011.1|WP_000829183.1|1543653_1544679_-|ABC-transporter-ATP-binding-protein
MAELRLEQLSKIFGNQTVVQKLDLTIPQGSFTAILGPSGCGKTTTLRIIAGLEQPSTGCLFLGSRLLANKIISLPPEQRNMGMVFQSYALWPHMTVEENVGYPLRLRQISSNIYKKRVMEALEAVELLAYSGRSPHELSGGQRQRVALARCLISNPEVILLDEPLSNLDRYLRTTMEKIFRELHHRTGTTFVYVTHDQAEAMALASHIAVMYKGTLVQWGIPQQIYEHPNNVWIAKFIGKGCILSLSIPGSEQFLDCTMLHQGFTQDRRVTYHNVLIRPEHVHLKNKGLPAKVENCIYQGERYLLELRLVDGQLLTAFHHSSVQPQQLVCIQLMQGWRLPK
>NZ_CP041011.1|WP_140197982.1|1544666_1546373_-|ABC-transporter-permease-subunit
MLQYQSINHNRYKWWSWLLFCFITLLILLPILQLFIFAITDWQHGRNSNLWHVLSNPLTWTALYNSLYTSGLGTLFSLLLGNLFAFCLVLTNIRIKQITFFLVMLPMMIPPQITAMSWLQLFRQVGIFFNRIGLSQGFGWPNPLYSAEGIALLLGIQNTPLVFLLIQTQLKYLPQEYIEAARLSGASFWKTFHDISLPLCRSTIWAGAAIAFVSSLGNFGIPAMLGIPISLLVLPVYIYQILSSFGPAVLNEVAALSVLTGVLTSGIMILQKHMQRHYAFPLIGITDNTLIFLLSNKWRIVIEILLSILIFSIVIAPLLALITTSLVPTTGVILNSDTFTLSAWKIIFDTQSATWRAILNSLLLSVSASLILMLLSLPLAWLLVRHPTRSLLWLYNILDIPYALPGVVLAISFILLFAHPLPLLDISLNGTLTIIFFAYMARFFTVCIKPVYSCMLQLDAAMEEAASLAGANVFQQFSHIVVPLLGPTAFSGAFLVFLSTIHELTVSALLWGPGKETLGVVIFNLYESGDIVQASAISVVVVIIVVLAMLLLNICSKFLPKGVMPWQN
>NZ_CP041011.1|WP_001022120.1|1546386_1547364_-|ABC-transporter-substrate-binding-protein
MNIKKIITTILLIFISIPIFAKSVLVLYTSQPIEDAQVTVNTFEKHHPDIEVKWIRDGTTKLMTRIQAELAAGGETPDVLLIADSLSMESLKHQGLLTAYKSPQAKHFQSWLYDKNGYYYGTKMITTGIAYHSNAPVKPTSWLDLIKPELKNMTTLPSPLYSGAAQIHQATLMNNSRLGWSYYEKLRKNGAMPQSGNGAVLSAIVSGDKAYGFLVDYMAIRAKAKGAPIEFVFPKEGVSIVTEPVAIMKASKNPQGAKKFIDFLLSKEGQNMVLQQGYIPADAALPVPEGFPPRNSIKLMPFNRAKALTNTEVNKKCFAELFGSH
>NZ_CP041011.1|WP_140197983.1|1547856_1548956_+|IS3-family-transposase
MKKTRYTEEQIAFALKQAETGTRVGEVCRKMGISEATFYNWKKKFAGLGVTELRRLRQLEDENQRLKKLVAELSLDKEMLQEVLKPKVLRPAQKRQAVTFLREAYRISVRRGCGLLMQSRTVYHWQSRRDDRAITLRIREIAETRIRYGCPRIHIQLRREGWPVNHKKTHRIYCLEGLNLRRKRPHRHVSAARRQQRPVLTHVDQCWSMDFVSDNLFNGRRFRALTVVDNFSRECLAIHAGKSLKGEDVVRIMEALRVLDKRLPVRIQTDNGSEFISKSLDKWAYEHGVTMDFSRPGKPTDNPFIESFNGSLRDECLNIHWFLSLEDVQDKLEKWCRKYNHERTHSSLNDMAPAEFIRSLKKDKYL
>NZ_CP041011.1|WP_038395677.1|1549906_1551403_+|C69-family-dipeptidase
MFSFKKCVLALSINLAFISSGFSCTTLLVGNEASSDGSMIVARSADSDAMKAQHFVIHPAMHNQTGMYSTKAHNGANDFTWPLPKESLRYTTVPNWKTQLHGATGFNEAGVGVSGTESIFASPKALAFDPYVEDKGITEDDIPDILLSQTKTAREAIALLGHIIETVGAGEGFGVAVVDDNEIWYLETATGHQWMAQRLPADQYFATGNQGRLQNYDPNDANMMGSKSLVAFATEKGLYNPQKDGKFNFSKAYTRDDERDRTYNDPRVWTIQQKFNPSVKQDMTAGRLFPVFMTPEKKMTLDDVKAVLRSHYEGTKHDPYSNGLNGKEPWRPVSVFRTYEAHVMQVRPWLPKEIGEVSYIGLGMADLTAFVPYYSGLKAYPANYTMGTDKADSQSIYWKYRKLQTLTMTDYPKLAPIVKKAYAEWEAKIAKEQQEVEAEYLNMAKTNKDAADKMLNDFNLRIMADAEKLTEALTNQLFTLRTQDIQSDIFFANAAKKD
>NZ_CP041011.1|WP_140197984.1|1552487_1553171_+|integrase-arm-type-DNA-binding-domain-containing-protein
MVRFWSAPQRSLNDPKIRNLKPSFKPVKLSDSHGLYLLANPGGSRIWYLKYRFNSKESRVSLGAYPLVSLAGARQQRDGVRKLLAQNINPAQQRMADKAAASPEKCFKAVALAWHKTNKKWSSDSATRILASMKNHIFPAIAHLPVTTLKTQYFTALLRVIESKGFLEVASRTRQQLCNIMCYAVQQGLTENNPALHLEGVTAPPVKNHYPALPLERLPELLERIGD
>NZ_CP041011.1|WP_000400306.1|1553840_1555295_+|AMP-nucleosidase
MEHKGTNLTPEQALDRLEELYEQSVNALREAIASYIDNGTLPDPHARLNGLFVYPSLSVSWDGATPNLPKTRAFGRFTHPGCYTTTVTRPALFRAYLLGQLNLVYQDYGAHIAVEASHHEIPYPYVIDGSALTLDRSMSADLTRHFPTTELAQIGDETADGLFHPGEFYPLSHFDARRVDFSLARLRHYTGTPVEHFQPFVLFTNYTRYVDEFVRWGCSQILDPNSPYIALSCAGGIWITAETEAPEEAISDLAWKKHQMPAWHLVTADGQGITLVNIGVGPSNAKTICDHLAVLRPDVWLMIGHCGGLRESQAIGDYVLAHAYLRDDHVLDAVLPPDIPIPSIAEVQRALYDATKAVSRMPGEEVKQRLRTGTVVTTDDRNWELRYSASALRFNLSRAVAIDMESSTIAAQGYRFRVPYGTLLCVSDKPLHGEIKLPGQANRFYEGAISEHLQIGIRAIDLLRAEGDRLHSRKLRTFNEPPFR
>NZ_CP041011.1|WP_140197985.1|1556442_1560426_+|hypothetical-protein
MQSEQNHNIRHLPLPQSVREAITAARKQAGTFYAFTEADTPLLIQSQDGTASGKSYNVFAQYIESVNPAINPGNSHRNLVFITPLKSQIDIPEQLIARARDKKIELLPYLSQGDIADLGFTSWVKSPEGKTPTNRERYRRWIKQANELMSGEIQLIFQRLKAEVDARNSLEVRLETEIKVGATFEQKRLEDELRLNSFHLAGRLQEATVAMLNTLNQDLAVLLDGEATNPRYALATEMVKHLFPFQIALYRRCILLATTKKFDGSVLLLKRDKEGGYLRSSQQLDHVLGQKKSLKVNPLGEIANQTNPQRIESLKEQYWITDEDSPFAQRDIRFTLVLDEEHEAYRIFQQNVCQTLMNDDQQLPSLLAILHRVLEYVDECSSDERAPGYTPLKNYVDEINKALLQCDLRPDFDLKKLTRLFRNSLLDIVVDSRNAEQVIALIGNIFSYQIQRFYRESDLRRIHLRSHGRHSYTEVYVSEDDKKVPDEFNLYELYQTLTALLLASARLETPKHVCDLLAQQEMANQNNPLSVFIRKAQSIKGDIDHLSSSEPQKEQLIDDFFTYFQPKTLFSLSPREQVRIEAEQLRGWVLLKFRMELIKELPEIALLRVLYNTRNTIILLSATAGFPATYNGQYSRPFLDKYARDLNYRIRQRDVDSASPLAAIRDNRNLHRPVALEVFDDQVLEFLPQNEEPEFRNAYRFWLKMLEPYSTAVQFNRYHKREFHRQLQCMLLAAYTGRHILCIGISSRFFAIIGNFLRANKLSANPYRGVTILDNETRRGNDLPRVFEITPFAERHRLRVVMFDSKLNREDPVRDYLQIDHQNLAICMVSHFQGAGTGLNYYVTYPAPSEPVGADSEQIDFDELAMVCGSYWSQINATPSRNTLENYITLLKHYAHGSVPRHVGDFDTDLVDSDAAQLLNTEHIVELHKIAMQTIGRTERRDAQMNGIIRLPSGVHHNALCVFRDLDRHPNAQSLLASLSLHNHLWFKRSKEDLLKASFSSDSQRNEFENRVIKALEMYGDFEAELKNKILPLARQGDRDAIELNEALRHWDSFTDPQSYMNRLKRNAIIKKNAYLSDCVSHFYLERTADWQNVILAKTLDGCGLTDISAGANPYKPEYCLPQYHEAMAEESSGTELRIFAKILGIDARPLQQFIPIPSLMPLLIGNIGEWQLHLVLQEMNITPIRPQELSHYLDSHCYELFDVYCINKNRIVAIDVKNWRMQGNNRQLAKKMHNNSLGKVSELQKIVTTKTQFDGVDVVYLNTRYALNSLNIRAEHSNHKGVCYYNLFKNISSYEKDNGKNPYDAKIKSELRINQYLLNLLGVNYD
>NZ_CP041011.1|WP_140197986.1|1560418_1562545_+|hypothetical-protein
MTDVTESQQHNETDVVMSAEWGLQPPDYAPKARTQLFDIHDTADVMLEKLLQLPSANGWGIDAICITKVKEYSMKWDDFFIELHREIQNILSLKLGVKNNREFQYQTLKKANNYLVMFLSPDARPYHQWINELKIKGFDQYKIAQTVLGLRLKLHFLDNAGKYFDVSHGAYNSEIFLGAVVQKEEPDKRGNYYVDALQSDLFYSPDYGDLTFTLKGICFRAKAEELGVLCDYGRILIKGKKSLQLLEKVDGRKYRKMPYMRFASKAYSGCKNHAENLVQSVLGDILSQADITFSPRVFCATHSQLDFLTTNVKVLQRPLVIIDNLDNGEEPEAHQRFIHYLKKELGAVDIISPRELIDLDKDVNYLVLNQSKKINGSSISLGEDTFLNSTWQALNEVKAGKKDLLDYYSRLKVDFILDFEKNHQRVFQGCNIEAIEQNKKDPVTQVVKKVLNPVSVAKLEMIRSELWLKEAVLVRKKLTGFSINDGEYILVSIRCSSSGNRRGNDFYGVATPVVFSHGVMNIADPKMYTDEIDFRNNVPGMNINCIDKLRDDNFYLVDTINQVVIKRYNTVRIPRLLGSAERCSLQVAEENQDKINKFGAADKTCLPYYLTPKPKSHAVSQYQQLFIEKRGNEALLFCTKSNQPNQIMDRATLVYNLVATTFDGKEVDVMTQPAAELLLRTLTYDTTRYNEVSQTSLLEKISRLMLHN
>NZ_CP041011.1|WP_140197987.1|1562635_1567489_-|ATP-binding-protein
MSDTNLSGPSNGGGAATSSGIVFQQQLGAFFAAQILSNDPLDPSLVLGDAAPVRLRFETEAPVDDILVATSVGGFLAIQVKTTVPLSDKEKSPFYRTIEQFVQHWLTCRDGDGSLAWNRPLSPEKDRLILAVSTKASATVRTDLSAALRHLSQQGRGAMNRKQKSASDIFERCVLTAWGRITTEPRPSDLLAELARLIVVHVVDVENIASTLQMRLSRSLARETDSAAALSILVTTCGEMMSRRDGCDALLLRNMLAGKGIKLAAPPQYQADIHQLIRHSQHVANVLQQYETIDNPSGQPLTLHRECQDAVEQAVQSGSLLIIGEPGAGKSGVLNALARSLRNRGDDVLELAVDHYSVESLEGLSRELRLDHCLTEVLEAWDGTSHGWLIIDALDATRGGKGEAVFRPLIEQVLNQKGRWRVIASIRSFDLRMGVKLRDLFKGHPPVSERADTQFSSVRHIVIPRWSDNEFSQLLEQSSALTAALKQLSDRLRDLAKVPFNTRLLADLVSQYADINLSRISSQSELLKLYWQYRVEKHGLNARQCLKALVDHMIATRSLRAPSLLTGTDADMIDTLSREGVVVREANDRWVQFRHHLLFDYAAAKISFDPDALIAGTLRFPKQQAQGLLLSPALGFVLQEIWDYNEDHHGFWQAVSHLVNDSDGDPIIRSSTSRIAAEYPVAQNDLLWLAKRVAMDDQNVISTLSHLCGALAIRFEDEKEVALLPWVYLVSALTPDVNKVAETLRFLLHPLTKQVTDPDLRNILGTACRAVLSYGLKQSEPGYFVRNAIPLVADTINTDVDASCRLLEQIISVKRLQHFGSEEIPVLCYNIKKIADRAPEFVACVFEFVYRYDVTEERETTLGNSRILPLRSNVRQDYESARYSLGEFFSHFLEQHPEQAVDAAVNALNGYVARRHPVDAPVMHLSISGNDISLKADHSHIWAYNPTGEHAHDGEVLVKKLFQHLKSATEPDMLVLAELIRQKASLAIFWARLFLAANERNDSLVDFLWPIAAQEAFIRNEDTCKDAIDLVSKGIARRPLEERQMLENAAFQYNFSGYIYPEDAKKRLLYRLFNAIGSDNLSTEAARDFLKNTQGNDEISGNKRLFDISPVNISTDIPYDFIEGLDRNEPANAMLISAVKTAKTALGLTTNNTLSSELSLEDVFGILEPLREQLNTVNIHTYVRTTAEDVIVRACAAAVEQKLLPPANDNQVDELTPHFLDLLHMTSRAISPTVNEDTEDNFANSVSWGSPSPRIDAARIFLDVIPLRPDLYDRLKPDIERMLIDPHPAVRLQASTRLLRLWNIAPESVWHYLNQRVEQEINTGIIEHMVGDGIRSLLYTDPTRSFCLIQKLLGRFSNDPERQHRIRKIVSIDLAILWGVHEIREAHDIIQCWIVDPTIYSHELEKILFTLRDGFVLGFAEQSTPKDIGIRRRALDIAYSIIDAAGKKLEEYSSRTDLTEIELEDVKRCFAIIDGACLQLRFVCEGKHNPEKPSGKEEVKRFLNETELHMRRIGDCSTPHTIYYLLELLETFVPVDPAKCFDLMAHALRHGTKFGFQNEHMGMEQLVKMMGVFLADYKIIFEEEHRRTCLIESLDIFMDAGWPSARRLLYRLPELIQ

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP041011_1	1.4\|1541848\|18\|NZ_CP041011\|CRT	1541848-1541865	18	NZ_CP041011.1	2303559-2303576	0	1.0
NZ_CP041011_1	1.1\|1541668\|18\|NZ_CP041011\|CRT	1541668-1541685	18	NZ_CP041011.1	1413788-1413805	1	0.944
NZ_CP041011_1	1.3\|1541788\|18\|NZ_CP041011\|CRT	1541788-1541805	18	NZ_CP041011.1	1413548-1413565	1	0.944

1. spacer 1.4|1541848|18|NZ_CP041011|CRT matches to position: 2303559-2303576, mismatch: 0, identity: 1.0

gagctgtcggtagatggt	CRISPR spacer
gagctgtcggtagatggt	Protospacer
******************

2. spacer 1.1|1541668|18|NZ_CP041011|CRT matches to position: 1413788-1413805, mismatch: 1, identity: 0.944

gagctgattttcgctggt	CRISPR spacer
gagctgattgtcgctggt	Protospacer
********* ********

3. spacer 1.3|1541788|18|NZ_CP041011|CRT matches to position: 1413548-1413565, mismatch: 1, identity: 0.944

aagctgtgggcctttaat	CRISPR spacer
aagctgtgggcctataat	Protospacer
************* ****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1929581 : 2002468

Salmonella_phage(40.98%)

terminase,head,portal,holin,protease,integrase,capsid,lysis,tRNA,tail

attL 1931990:1932005|attR 1965498:1965513

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_140198064.1\|1929581_1930394_-\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA
WP_001289150.1\|1930393_1931407_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_140198065.1\|1931467_1932604_-	4-phosphoerythronate dehydrogenase PdxB	A0A2R8FDS8	Brazilian_cedratvirus	5.5e-21	28.5
1931990:1932005	attL	NA	NA	NA	NA
WP_038395107.1\|1932707_1933709_+	flagella biosynthesis regulator Flk	NA	NA	NA	NA
WP_079827538.1\|1933705_1934884_-	MFS transporter	NA	NA	NA	NA
WP_058819498.1\|1935061_1935436_-	hypothetical protein	NA	NA	NA	NA
WP_000433428.1\|1935608_1935857_+	transcriptional regulator	A0A0M4UV99	Ralstonia_phage	3.1e-17	58.6
WP_038395100.1\|1936025_1936394_+	hypothetical protein	H6SUH4	Campylobacter_virus	5.0e-08	37.9
WP_058344827.1\|1936393_1936912_+	YbjP/YqhG family protein	NA	NA	NA	NA
WP_038395098.1\|1937038_1938259_-	beta-ketoacyl-ACP synthase I	NA	NA	NA	NA
WP_079832615.1\|1938357_1940418_+\|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	NA	NA	NA	NA
WP_038395092.1\|1940468_1940741_-	YfcL family protein	NA	NA	NA	NA
WP_058344824.1\|1940773_1941322_-	elongation factor P hydroxylase	NA	NA	NA	NA
WP_058819495.1\|1941321_1942131_-	TSUP family transporter	NA	NA	NA	NA
WP_000750432.1\|1942130_1942955_-	penicillin-insensitive murein endopeptidase	NA	NA	NA	NA
WP_038395086.1\|1942958_1944044_-	chorismate synthase	A0A291AU41	Pandoravirus	2.0e-89	47.5
WP_058819494.1\|1944079_1945012_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_038395079.1\|1945177_1945729_+	endonuclease SmrB	NA	NA	NA	NA
WP_038395077.1\|1945829_1946315_-	phosphohistidine phosphatase SixA	NA	NA	NA	NA
WP_038395075.1\|1946523_1948671_-	fatty acid oxidation complex subunit alpha FadJ	NA	NA	NA	NA
WP_140198066.1\|1948667_1949978_-	acetyl-CoA C-acyltransferase FadI	NA	NA	NA	NA
WP_000030903.1\|1950153_1950438_-	YfcZ/YiiS family protein	NA	NA	NA	NA
WP_000078995.1\|1950808_1952116_+	long-chain fatty acid transporter FadL	NA	NA	NA	NA
WP_038395067.1\|1952176_1952932_-	phospholipid-binding lipoprotein MlaA	NA	NA	NA	NA
WP_140198067.1\|1953224_1954166_+	formate/nitrite transporter family protein	E7DYY8	Enterobacteria_phage	3.2e-147	87.6
WP_085386130.1\|1954476_1955634_+\|integrase	tyrosine-type recombinase/integrase	G8EYJ8	Enterobacteria_phage	1.8e-176	78.4
WP_140198068.1\|1955705_1956974_-\|tail	phage tail protein	A0A1V0E5M2	Salmonella_phage	1.8e-129	59.4
WP_140198069.1\|1956984_1957944_-	hypothetical protein	H6WRW5	Salmonella_phage	2.8e-175	94.0
WP_140198070.1\|1957952_1960685_-	DUF1983 domain-containing protein	S4TTF5	Salmonella_phage	0.0e+00	93.5
WP_023993424.1\|1960684_1961083_-	hypothetical protein	S4TR39	Salmonella_phage	2.9e-70	94.7
WP_140198071.1\|1961089_1961674_-	hypothetical protein	S4TND4	Salmonella_phage	3.5e-104	96.9
WP_140198072.1\|1961673_1962267_-	hypothetical protein	S4TSP7	Salmonella_phage	6.9e-108	96.4
WP_140198073.1\|1962432_1962681_+	hypothetical protein	NA	NA	NA	NA
WP_140198074.1\|1962783_1966095_-\|tail	phage tail tape measure protein	S4TTF9	Salmonella_phage	0.0e+00	79.0
1965498:1965513	attR	NA	NA	NA	NA
WP_052910053.1\|1966141_1966477_-	zinc ribbon domain-containing protein	S4TR42	Salmonella_phage	5.7e-43	76.6
WP_140198075.1\|1966533_1966812_-	DUF4035 domain-containing protein	Q9MCS5	Enterobacteria_phage	1.6e-35	82.6
WP_140198076.1\|1966820_1967210_-\|tail	phage tail protein	K7PKV6	Enterobacterial_phage	1.6e-57	85.2
WP_140198077.1\|1967237_1967942_-\|tail	phage tail protein	K7PHL2	Enterobacterial_phage	1.4e-94	76.1
WP_047389186.1\|1967997_1968345_-	DUF3168 domain-containing protein	K7PKL6	Enterobacterial_phage	1.1e-57	98.3
WP_010835820.1\|1968341_1968791_-	HK97 gp10 family phage protein	S4TR46	Salmonella_phage	2.5e-73	96.6
WP_140198078.1\|1968787_1969126_-\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	3.3e-38	70.5
WP_140198079.1\|1969135_1969462_-\|head,tail	phage gp6-like head-tail connector protein	K7PKT4	Enterobacteria_phage	7.8e-53	90.7
WP_140198080.1\|1969458_1969641_-	hypothetical protein	K7PHI6	Enterobacteria_phage	2.6e-10	60.6
WP_140198081.1\|1969682_1970900_-\|capsid	phage major capsid protein	K7PM57	Enterobacteria_phage	6.0e-199	88.1
WP_140198082.1\|1970909_1971758_-\|protease	Clp protease ClpP	K7PH05	Enterobacteria_phage	1.7e-131	88.2
WP_140198083.1\|1971771_1973076_-\|portal	phage portal protein	K7PJU5	Enterobacteria_phage	7.8e-221	87.6
WP_140198084.1\|1973075_1974815_-\|terminase	terminase large subunit	A0A0U2C138	Paracoccus_phage	2.2e-138	44.5
WP_000919035.1\|1974771_1975233_-\|terminase	phage terminase small subunit P27 family	Q9B019	Phage_GMSE-1	1.8e-47	62.1
WP_024134785.1\|1975364_1975709_-	HNH endonuclease	K7P7P6	Enterobacteria_phage	1.8e-47	74.8
WP_140198447.1\|1975844_1976297_-\|lysis	lysis protein	Q56118	Enterobacteria_phage	9.1e-68	90.7
WP_001167373.1\|1976311_1976749_-	lysozyme	Q5G8R3	Enterobacteria_phage	2.5e-75	99.3
WP_000738703.1\|1976732_1977059_-\|holin	phage holin, lambda family	Q5G8R5	Enterobacteria_phage	1.7e-52	100.0
WP_023200922.1\|1977284_1977806_-	helix-turn-helix domain-containing protein	A0A1V0E5R7	Salmonella_phage	1.6e-55	62.8
WP_134940665.1\|1978368_1978992_-	antitermination protein	C6ZR62	Salmonella_phage	2.6e-113	99.0
WP_015995309.1\|1978988_1979171_-	hypothetical protein	C6ZR61	Salmonella_phage	5.0e-25	100.0
WP_140198085.1\|1979158_1979629_-	hypothetical protein	C6ZR60	Salmonella_phage	1.3e-88	96.2
WP_000024177.1\|1979609_1979846_-	hypothetical protein	C6ZR59	Salmonella_phage	9.9e-34	87.2
WP_000566851.1\|1979838_1980009_-	protein ninF	I6R994	Salmonella_phage	1.3e-22	85.2
WP_043856233.1\|1980005_1980182_-	NinE family protein	I6RSI9	Salmonella_phage	1.5e-26	98.3
WP_063085254.1\|1980178_1980589_-	recombination protein NinB	A0A0P0ZCW6	Stx2-converting_phage	6.1e-71	98.5
WP_140198086.1\|1980596_1980803_-	hypothetical protein	A0A192Y802	Salmonella_phage	3.5e-27	85.3
WP_140198087.1\|1980875_1982252_-	AAA family ATPase	I6R0N4	Salmonella_phage	5.0e-250	98.3
WP_080089541.1\|1982248_1983064_-	replication protein	A0A075B8J2	Enterobacteria_phage	3.9e-146	95.9
WP_139763666.1\|1983056_1983203_-	DUF2740 domain-containing protein	A0A075B8K7	Enterobacteria_phage	8.0e-18	93.8
WP_001103492.1\|1983237_1983519_-	hypothetical protein	Q76H54	Enterobacteria_phage	4.3e-44	100.0
WP_000182204.1\|1983629_1983845_-	helix-turn-helix domain-containing protein	Q76H55	Enterobacteria_phage	1.3e-32	100.0
WP_000712403.1\|1983955_1984645_+	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	1.3e-126	100.0
WP_119753674.1\|1984679_1985723_+	hypothetical protein	A4KWR9	Enterobacteria_phage	8.2e-72	40.9
WP_140198088.1\|1985758_1985968_-	fumarate hydratase FumD	I6R0R9	Salmonella_phage	1.7e-29	97.1
WP_140198089.1\|1986327_1986816_+	HNH endonuclease	F8UBV0	Escherichia_phage	7.6e-36	52.6
WP_140198090.1\|1986817_1987147_+	hypothetical protein	Q5G8T5	Enterobacteria_phage	3.3e-51	93.6
WP_140198091.1\|1987197_1988559_+	hypothetical protein	Q5G8T6	Enterobacteria_phage	3.5e-62	92.0
WP_085376026.1\|1988758_1988899_+\|protease	protease FtsH-inhibitory lysogeny factor CIII	Q776Q5	Enterobacteria_phage	2.9e-17	82.6
WP_085376025.1\|1988891_1989005_+	host cell division inhibitory peptide Kil	C6ZR39	Salmonella_phage	3.9e-12	94.6
WP_134949334.1\|1989198_1989906_+	recombinase	A0A2H4FN95	Salmonella_phage	3.9e-134	96.6
WP_001253478.1\|1989905_1990190_+	Anti-RecBCD protein 1	E7C9P9	Salmonella_phage	1.5e-44	97.9
WP_140198092.1\|1990236_1990530_+	DUF2856 family protein	A0A1V0E5L7	Salmonella_phage	4.0e-48	95.9
WP_023892410.1\|1990540_1990714_+	DUF2737 family protein	A0A2H4FUQ1	Salmonella_phage	5.6e-26	98.2
WP_140198093.1\|1991168_1991402_+	hypothetical protein	S4TVX5	Salmonella_phage	2.8e-12	46.2
WP_024154294.1\|1991398_1991689_+	hypothetical protein	NA	NA	NA	NA
WP_140198094.1\|1991685_1992414_+	protein Ead	Q5G8U8	Enterobacteria_phage	1.4e-62	59.3
WP_140198095.1\|1993130_1993931_+	DUF550 domain-containing protein	A0A1R3Y5Q8	Salmonella_virus	4.3e-28	44.3
WP_001163428.1\|1994133_1994334_+	response regulator inhibitor TorI	K7P7V0	Enterobacteria_phage	2.4e-33	100.0
WP_079798718.1\|1995023_1995437_-	SidA/IucD/PvdA family monooxygenase	NA	NA	NA	NA
WP_109462859.1\|1995437_1995656_-	SidA/IucD/PvdA family monooxygenase	NA	NA	NA	NA
WP_000839652.1\|1995727_1996906_-	SfnB family sulfur acquisition oxidoreductase	NA	NA	NA	NA
WP_058344785.1\|1997899_1998544_-	hypothetical protein	NA	NA	NA	NA
WP_038395055.1\|2001529_2002468_-\|protease	omptin family outer membrane protease	NA	NA	NA	NA

DBSCAN-SWA_2

3955793 : 4028220

uncultured_Caudovirales_phage(13.33%)

tRNA,protease,transposase,integrase

attL 4022475:4022489|attR 4035048:4035062

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038397075.1\|3955793_3957146_+\|protease	metalloprotease PmbA	NA	NA	NA	NA
WP_038397074.1\|3957194_3957581_+	cytochrome b562	NA	NA	NA	NA
WP_140198334.1\|3957868_3958207_+	glycine dehydrogenase	NA	NA	NA	NA
WP_140198335.1\|3958217_3958580_+	hypothetical protein	NA	NA	NA	NA
WP_024132044.1\|3958579_3958882_+	DUF4312 family protein	NA	NA	NA	NA
WP_023182636.1\|3959293_3959536_+	type II toxin-antitoxin system RelB/DinJ family antitoxin	A0A2H4JBG1	uncultured_Caudovirales_phage	9.6e-16	50.0
WP_000220584.1\|3959525_3959810_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A2H4JBF4	uncultured_Caudovirales_phage	1.0e-29	66.0
WP_058819816.1\|3959819_3960284_-	anaerobic ribonucleoside-triphosphate reductase-activating protein	H6WXC9	Vibrio_phage	2.7e-51	59.1
WP_000187814.1\|3960439_3962578_-	anaerobic ribonucleoside-triphosphate reductase	A0A2I7QNQ7	Vibrio_phage	1.5e-266	64.4
WP_140198336.1\|3966061_3967009_-	HTH-type transcriptional regulator TreR	NA	NA	NA	NA
WP_134940490.1\|3967153_3967252_+	mgtA regulatory leader peptide MgtL	NA	NA	NA	NA
WP_058819815.1\|3967392_3970101_+	magnesium-translocating P-type ATPase	A0A1J0FA34	Only_Syngen_Nebraska_virus	5.7e-48	25.8
WP_000047541.1\|3970194_3970581_-	2-iminobutanoate/2-iminopropanoate deaminase	NA	NA	NA	NA
WP_000148571.1\|3970686_3971148_-	aspartate carbamoyltransferase regulatory subunit	NA	NA	NA	NA
WP_000013031.1\|3971161_3972097_-	aspartate carbamoyltransferase	A7RB08	Paramecium_bursaria_Chlorella_virus	4.2e-51	40.2
WP_024132039.1\|3972132_3972234_-	pyr operon leader peptide	NA	NA	NA	NA
WP_077905505.1\|3972213_3972354_+	hypothetical protein	NA	NA	NA	NA
WP_023182627.1\|3972323_3972812_-	arginine repressor	NA	NA	NA	NA
WP_079781499.1\|3972998_3974402_-	YfcC family protein	NA	NA	NA	NA
WP_058344583.1\|3974457_3975462_-	ornithine carbamoyltransferase	NA	NA	NA	NA
WP_038397862.1\|3975544_3976471_-	carbamate kinase	NA	NA	NA	NA
WP_000410853.1\|3976481_3977702_-	arginine deiminase	NA	NA	NA	NA
WP_038397063.1\|3978813_3979818_-	ornithine carbamoyltransferase	NA	NA	NA	NA
WP_000002938.1\|3979983_3980400_+	ribonuclease E inhibitor RraB	NA	NA	NA	NA
WP_140198337.1\|3980460_3981225_+\|tRNA	tRNA isopentenyl-2-thiomethyl-A-37 hydroxylase MiaE	NA	NA	NA	NA
WP_140198338.1\|3982008_3982581_+	relaxase/mobilization nuclease domain-containing protein	M1Q738	Cellulophaga_phage	2.7e-64	67.2
WP_140198339.1\|3982763_3984851_+	lipase family protein	A0A2R8FER2	Brazilian_cedratvirus	4.1e-06	35.1
WP_058344700.1\|3984861_3985617_+	hypothetical protein	NA	NA	NA	NA
WP_079833052.1\|3986537_3989393_-\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	7.9e-141	36.7
WP_000786389.1\|3989392_3989836_-	DNA polymerase III subunit chi	NA	NA	NA	NA
WP_000397141.1\|3990028_3991540_-	leucyl aminopeptidase	Q6GYZ8	Mycoplasma_phage	7.1e-48	38.0
WP_140198340.1\|3991932_3993033_+	LPS export ABC transporter permease LptF	NA	NA	NA	NA
WP_038397057.1\|3993032_3994115_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA
WP_115400408.1\|3994214_3995717_-	DUF853 domain-containing protein	A0A248XCZ8	Klebsiella_phage	1.3e-81	43.8
WP_140198341.1\|3998029_3998560_+	gluconokinase	NA	NA	NA	NA
WP_080152651.1\|3998587_3999607_-	NAD(P)-dependent alcohol dehydrogenase	A0A2K9L7I1	Tupanvirus	1.9e-44	31.4
WP_023302402.1\|4000102_4001350_+\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	2.5e-83	39.6
WP_140198342.1\|4001461_4002331_+	hypothetical protein	NA	NA	NA	NA
WP_000608199.1\|4002575_4003001_-	hypothetical protein	NA	NA	NA	NA
WP_016190490.1\|4003424_4003628_+	AlpA family transcriptional regulator	NA	NA	NA	NA
WP_000540851.1\|4004007_4005213_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_140198343.1\|4005214_4006525_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_140198344.1\|4006524_4008165_+	DNA-binding protein	NA	NA	NA	NA
WP_001052044.1\|4008157_4008556_+	hypothetical protein	NA	NA	NA	NA
WP_032697196.1\|4008653_4009067_+	hypothetical protein	NA	NA	NA	NA
WP_001417601.1\|4010723_4011026_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_140198345.1\|4011127_4011796_-	hypothetical protein	NA	NA	NA	NA
WP_140198346.1\|4012106_4013348_-	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA
WP_140198347.1\|4013352_4013754_-	hypothetical protein	NA	NA	NA	NA
WP_140198348.1\|4014016_4014223_+	hypothetical protein	NA	NA	NA	NA
WP_140198349.1\|4014212_4014671_+	hypothetical protein	NA	NA	NA	NA
WP_140198350.1\|4014947_4015220_+	His-Xaa-Ser system protein HxsD	NA	NA	NA	NA
WP_140198351.1\|4016600_4017713_+	His-Xaa-Ser system radical SAM maturase HxsC	NA	NA	NA	NA
WP_023302418.1\|4017709_4018339_+	His-Xaa-Ser repeat protein HxsA	NA	NA	NA	NA
WP_023302419.1\|4018371_4020141_+	hypothetical protein	NA	NA	NA	NA
WP_023302420.1\|4020152_4020896_+	hypothetical protein	NA	NA	NA	NA
WP_058649060.1\|4020895_4022236_+	DNA-binding protein	NA	NA	NA	NA
WP_023302422.1\|4022232_4022958_+	TatD family hydrolase	NA	NA	NA	NA
4022475:4022489	attL	NA	NA	NA	NA
WP_140198463.1\|4023761_4025030_+\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	6.3e-82	40.5
WP_079822877.1\|4026861_4028220_+\|transposase	IS110 family transposase	Q9JMN8	Wolbachia_phage	1.6e-115	47.0
4035048:4035062	attR	NA	NA	NA	NA

DBSCAN-SWA_3

4424576 : 4472995

Salmonella_phage(28.57%)

terminase,tail,integrase,holin

attL 4425339:4425353|attR 4458455:4458469

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038396854.1\|4424576_4425629_-	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	3.9e-114	58.7
4425339:4425353	attL	NA	NA	NA	NA
WP_038396853.1\|4425911_4427015_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	6.9e-61	40.1
WP_058345725.1\|4427026_4428277_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	1.2e-96	46.5
WP_134949339.1\|4428483_4429647_-\|integrase	site-specific integrase	G8C7S0	Escherichia_phage	3.1e-152	66.9
WP_134949338.1\|4429918_4430158_-	DUF4060 family protein	M9P0E0	Enterobacteria_phage	2.5e-32	87.2
WP_134949337.1\|4430154_4430988_-	DNA adenine methylase	Q5QF26	Pseudomonas_virus	2.0e-68	50.0
WP_140198393.1\|4431022_4432132_-	enterohemolysin	H6WRX0	Salmonella_phage	1.4e-186	89.2
WP_140198395.1\|4432143_4435083_-	exodeoxyribonuclease	H6WRX1	Salmonella_phage	0.0e+00	85.2
WP_140198397.1\|4435223_4435382_-	hypothetical protein	H6WRX3	Salmonella_phage	3.4e-22	96.2
WP_079806257.1\|4435494_4435719_-	hypothetical protein	NA	NA	NA	NA
WP_000373340.1\|4436004_4436211_+	hypothetical protein	K7P7I0	Enterobacteria_phage	7.4e-17	67.6
WP_000866320.1\|4436249_4436627_-	ASCH domain-containing protein	Q6SE87	Lactobacillus_prophage	3.3e-31	49.2
WP_080155191.1\|4436604_4437666_-	N-acetyltransferase	Q6SE88	Lactobacillus_prophage	3.1e-66	41.4
WP_024134787.1\|4437729_4438116_-	helix-turn-helix domain-containing protein	A0A0M4R5D1	Salmonella_phage	2.1e-57	92.1
WP_001013670.1\|4438219_4438456_+	hypothetical protein	A0A0M4QX15	Salmonella_phage	2.3e-38	100.0
WP_001574095.1\|4438421_4438796_+	hypothetical protein	S4TTD7	Salmonella_phage	3.9e-64	99.2
WP_000024049.1\|4438887_4439793_+	replication protein	A0A0M5M7Y1	Salmonella_phage	1.0e-174	99.0
WP_140198399.1\|4439789_4440482_+	phage replication protein	G8C7U6	Escherichia_phage	2.3e-78	59.7
WP_140198401.1\|4440495_4440858_+	hypothetical protein	G9L6B1	Escherichia_phage	1.5e-25	65.0
WP_079833169.1\|4440854_4441085_+	hypothetical protein	Q8HAA4	Salmonella_phage	4.7e-28	85.3
WP_140198403.1\|4441081_4441270_+	hypothetical protein	NA	NA	NA	NA
WP_140198404.1\|4441266_4442220_+	hypothetical protein	Q858D0	Salmonella_phage	3.7e-71	95.1
WP_140198406.1\|4442222_4442510_+	hypothetical protein	A5VWB2	Enterobacteria_phage	1.5e-28	61.9
WP_023230812.1\|4442513_4442723_+	hypothetical protein	NA	NA	NA	NA
WP_140198408.1\|4442719_4443013_+	hypothetical protein	Q5G8V1	Enterobacteria_phage	1.2e-31	77.8
WP_140198409.1\|4443005_4443605_+	hypothetical protein	NA	NA	NA	NA
WP_001220319.1\|4444134_4444401_+	hypothetical protein	H6WRY4	Salmonella_phage	2.6e-46	100.0
WP_001217671.1\|4444555_4444789_+	DinI family protein	H6WRY5	Salmonella_phage	1.6e-36	98.7
WP_014343878.1\|4444905_4445154_+	hypothetical protein	A0A0U2C0C8	Salmonella_phage	1.6e-42	100.0
WP_000929787.1\|4445188_4445791_+	DUF1367 family protein	H6WRY7	Salmonella_phage	2.2e-109	99.0
WP_079918762.1\|4445790_4445997_+	hypothetical protein	H6WRY8	Salmonella_phage	3.4e-30	90.9
WP_140198411.1\|4445999_4446611_+	recombination protein NinG	A0A0M4RU10	Salmonella_phage	3.0e-90	97.5
WP_140198413.1\|4446607_4446745_+	YlcG family protein	K7PHH3	Enterobacteria_phage	2.7e-15	88.4
WP_140198415.1\|4446741_4447431_+	antiterminator	I6PDF8	Cronobacter_phage	2.1e-63	53.6
WP_077953527.1\|4447949_4448984_+	cytosine methyltransferase	H9C177	Pectobacterium_phage	7.0e-124	66.5
WP_001568784.1\|4449119_4449398_+\|holin	holin	K7PGZ9	Enterobacteria_phage	5.1e-45	97.8
WP_069721563.1\|4449369_4449918_+	lysozyme	K7PM52	Enterobacteria_phage	1.9e-96	92.3
WP_069721562.1\|4449914_4450433_+	DUF2514 domain-containing protein	NA	NA	NA	NA
WP_042827252.1\|4450467_4450881_-	hypothetical protein	K7P7K4	Enterobacteria_phage	5.8e-45	66.9
WP_139134612.1\|4451075_4451267_+	DUF551 domain-containing protein	NA	NA	NA	NA
WP_069721561.1\|4451356_4451989_+	hypothetical protein	F1C5D5	Cronobacter_phage	3.0e-101	84.2
WP_069721560.1\|4452019_4452499_+	DUF2280 domain-containing protein	H9C190	Pectobacterium_phage	1.3e-51	71.4
WP_069721559.1\|4452464_4453883_+\|terminase	phage terminase large subunit	A0A2K9V3I6	Faecalibacterium_phage	5.7e-84	40.4
WP_140198417.1\|4453882_4455175_+	DUF1073 domain-containing protein	L7TRA1	Rhizobium_phage	2.2e-21	24.8
WP_069721567.1\|4455182_4456034_+	hypothetical protein	Q7Y5U5	Haemophilus_phage	1.6e-28	32.4
WP_069721557.1\|4456037_4457183_+	DUF2213 domain-containing protein	A0A2H4J159	uncultured_Caudovirales_phage	2.7e-15	32.9
WP_000142642.1\|4457185_4457677_+	hypothetical protein	NA	NA	NA	NA
WP_001131969.1\|4457680_4458649_+	DUF2184 domain-containing protein	NA	NA	NA	NA
4458455:4458469	attR	NA	NA	NA	NA
WP_019076905.1\|4458663_4459026_+	DUF4054 domain-containing protein	L7TRB1	Rhizobium_phage	5.5e-07	31.8
WP_069721556.1\|4459046_4459619_+	hypothetical protein	A0A2P9HXJ3	Yersinia_phage	1.1e-25	40.8
WP_069721555.1\|4459615_4459972_+	hypothetical protein	NA	NA	NA	NA
WP_069721554.1\|4459968_4460457_+	hypothetical protein	A0A2I7QS82	Vibrio_phage	1.6e-41	58.6
WP_069721553.1\|4460457_4461960_+	DUF3383 family protein	A0A2I7QS67	Vibrio_phage	2.2e-158	58.8
WP_016156265.1\|4461970_4462402_+	hypothetical protein	A0A2P9HXY3	Yersinia_phage	2.2e-34	53.8
WP_000032481.1\|4462410_4462824_+	hypothetical protein	A0A2P9HXM8	Yersinia_phage	8.7e-25	46.6
WP_069721552.1\|4462977_4464774_+	hypothetical protein	A0A2I7QS75	Vibrio_phage	3.0e-90	49.6
WP_069721551.1\|4464773_4465559_+	hypothetical protein	A0A2P9HXI6	Yersinia_phage	9.0e-47	41.1
WP_042827280.1\|4465560_4465896_+	hypothetical protein	A0A2I7RBP0	Vibrio_phage	1.3e-31	57.3
WP_019076896.1\|4465895_4466846_+	hypothetical protein	A0A2P9HXK2	Yersinia_phage	3.5e-69	45.8
WP_019076895.1\|4466846_4467209_-	hypothetical protein	NA	NA	NA	NA
WP_019076894.1\|4467230_4467848_+	hypothetical protein	A0A2I7QS79	Vibrio_phage	1.7e-53	49.8
WP_049269447.1\|4467844_4468225_+	hypothetical protein	A0A2H5BFY4	Vibrio_phage	4.2e-26	60.2
WP_069721549.1\|4468208_4469390_+	hypothetical protein	A0A2I7QS90	Vibrio_phage	5.6e-101	47.2
WP_000997158.1\|4469386_4470109_+	DUF2612 domain-containing protein	A0A2P9HXZ0	Yersinia_phage	6.5e-68	52.7
WP_134949481.1\|4471167_4471593_+\|tail	phage tail protein	A0A0M4S6V4	Salmonella_phage	6.8e-25	73.7
WP_134949318.1\|4471861_4472995_-	acyltransferase	A0A2H4IZR3	uncultured_Caudovirales_phage	6.5e-30	29.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage