CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP039339	Ralstonia solanacearum strain UW386 chromosome, complete genome	2 crisprs	cas3,DEDDh,csa3,PD-DExK,WYL,RT,DinG	0	4	8	0
NZ_CP039340	Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence	0 crisprs	csa3	0	0	116	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP039339_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP039339_1

1473481-1473693

Orphan

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCATGCGGGGATGAACCGA	PILER-CR
GTGTTCCCCGCGCATGCGGGGATGAACCG	CRISPRCasFinder
GTGTTCCCCGCGCATGCGGGGATGAACCGA	CRT

3 spacers

The CRISPR arrays of NZ_CP039339_1

>merge|NZ_CP039339|1|1473481-1473693|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCATGCGGGGATGAACCGACCCTGACCAGAACATAACCCAGCGTCCTCTAGTGTTCCCCGCGCATGCGGGGATGAACCGCCACGGCGTTCTTGATGTTGCCGAGGAACTGGGTGTTCCCCGCGCATGCGGGGATGAACCGAGATCCAGCGATTCTGCGATTACTGGACGATCGTGTTCCCCGCGCATGCGGGGATAAACCGA

>NZ_CP039339|1|1|1473481-1473693|PILER-CR
GTGTTCCCCGCGCATGCGGGGATGAACCGA	CCCTGACCAGAACATAACCCAGCGTCCTCTA
GTGTTCCCCGCGCATGCGGGGATGAACCGC	CACGGCGTTCTTGATGTTGCCGAGGAACTGG
GTGTTCCCCGCGCATGCGGGGATGAACCGA	GATCCAGCGATTCTGCGATTACTGGACGATC
GTGTTCCCCGCGCATGCGGGGATAAACCGA

>NZ_CP039339|1|1|1473481-1473692|CRISPRCasFinder
GTGTTCCCCGCGCATGCGGGGATGAACCG	ACCCTGACCAGAACATAACCCAGCGTCCTCTA
GTGTTCCCCGCGCATGCGGGGATGAACCG	CCACGGCGTTCTTGATGTTGCCGAGGAACTGG
GTGTTCCCCGCGCATGCGGGGATGAACCG	AGATCCAGCGATTCTGCGATTACTGGACGATC
GTGTTCCCCGCGCATGCGGGGATAAACCG

>NZ_CP039339|1|1|1473481-1473693|CRT
GTGTTCCCCGCGCATGCGGGGATGAACCGA	CCCTGACCAGAACATAACCCAGCGTCCTCTA
GTGTTCCCCGCGCATGCGGGGATGAACCGC	CACGGCGTTCTTGATGTTGCCGAGGAACTGG
GTGTTCCCCGCGCATGCGGGGATGAACCGA	GATCCAGCGATTCTGCGATTACTGGACGATC
GTGTTCCCCGCGCATGCGGGGATAAACCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP039339.1\|WP_064048787.1\|1466824_1467061_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039339.1\|WP_138928794.1\|1481318_1484276_-\|phosphoenolpyruvate-carboxylase	unknown	unknown	gnl\|CDD\|234570
NZ_CP039339.1\|WP_064048803.1\|1475138_1476554_-\|argininosuccinate-lyase	unknown	unknown	gnl\|CDD\|179143
NZ_CP039339.1\|WP_138928790.1\|1473815_1474490_+\|DUF433-domain-containing-protein	unknown	unknown	gnl\|CDD\|377269
NZ_CP039339.1\|WP_138928795.1\|1484384_1485389_+\|hydroxymethylbilane-synthase	unknown	unknown	gnl\|CDD\|234612
NZ_CP039339.1\|WP_138928789.1\|1467084_1468239_+\|formate-dehydrogenase-subunit-gamma	unknown	unknown	gnl\|CDD\|225419
NZ_CP039339.1\|WP_064048791.1\|1469318_1470194_+\|formate-dehydrogenase-accessory-sulfurtransferase-FdhD	unknown	unknown	gnl\|CDD\|376873
NZ_CP039339.1\|WP_064048793.1\|1471002_1473282_+\|arginine/lysine/ornithine-decarboxylase	unknown	unknown	gnl\|CDD\|224893
NZ_CP039339.1\|WP_064048807.1\|1478888_1479773_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP039339.1\|WP_138928792.1\|1477382_1478024_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|105710
NZ_CP039339.1\|WP_064048785.1\|1463120_1466120_+\|formate-dehydrogenase-subunit-alpha	unknown	unknown	gnl\|CDD\|239153
NZ_CP039339.1\|WP_064048789.1\|1468264_1468597_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039339.1\|WP_064048790.1\|1468675_1469224_+\|superoxide-dismutase-family-protein	unknown	unknown	gnl\|CDD\|376292
NZ_CP039339.1\|WP_064048786.1\|1466135_1466822_+\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|319893
NZ_CP039339.1\|WP_138928788.1\|1462811_1463066_+\|twin-arginine-translocation-signal-domain-containing-protein	unknown	unknown	gnl\|CDD\|274310
NZ_CP039339.1\|WP_138928793.1\|1479899_1481318_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|129794
NZ_CP039339.1\|WP_064048792.1\|1470361_1470928_+\|dCTP-deaminase	unknown	unknown	gnl\|CDD\|234753
NZ_CP039339.1\|WP_064048806.1\|1478206_1478818_+\|ferritin-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|372666
NZ_CP039339.1\|WP_064048802.1\|1474486_1474903_+\|DUF5615-family-PIN-like-protein	unknown	unknown	gnl\|CDD\|375906
NZ_CP039339.1\|WP_138928791.1\|1476663_1477383_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227648

Protein	Function_ID	Function_description	E-value
NZ_CP039339.1\|WP_138928794.1\|1481318_1484276_-\|phosphoenolpyruvate-carboxylase	gnl\|CDD\|234570	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed.	0
NZ_CP039339.1\|WP_064048803.1\|1475138_1476554_-\|argininosuccinate-lyase	gnl\|CDD\|179143	PRK00855, PRK00855, argininosuccinate lyase; Provisional.	0
NZ_CP039339.1\|WP_064048793.1\|1471002_1473282_+\|arginine/lysine/ornithine-decarboxylase	gnl\|CDD\|224893	COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism].	0
NZ_CP039339.1\|WP_138928790.1\|1473815_1474490_+\|DUF433-domain-containing-protein	gnl\|CDD\|377269	pfam04255, DUF433, Protein of unknown function (DUF433).	4.22894e-15
NZ_CP039339.1\|WP_138928789.1\|1467084_1468239_+\|formate-dehydrogenase-subunit-gamma	gnl\|CDD\|225419	COG2864, FdnI, Cytochrome b subunit of formate dehydrogenase [Energy production and conversion].	9.26902e-83
NZ_CP039339.1\|WP_064048791.1\|1469318_1470194_+\|formate-dehydrogenase-accessory-sulfurtransferase-FdhD	gnl\|CDD\|376873	pfam02634, FdhD-NarQ, FdhD/NarQ family. A pan-bacterial lineage of proteins. Nitrate assimilation protein, NarQ, and FdhD are required for formate dehydrogenase activity. Structurally, they possess a deaminase fold with a characteristic binding pocket, suggesting that they might bind a nucleotide or related molecule allosterically to regulate the formate dehydrogenase catalytic subunit.	3.86098e-101
NZ_CP039339.1\|WP_064048802.1\|1474486_1474903_+\|DUF5615-family-PIN-like-protein	gnl\|CDD\|375906	pfam18480, DUF5615, Domain of unknown function (DUF5615). This is a domain of unknown function found in potential toxin-antitoxin system component.	1.20407e-07
NZ_CP039339.1\|WP_064048807.1\|1478888_1479773_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	5.52481e-38
NZ_CP039339.1\|WP_138928792.1\|1477382_1478024_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|105710	PRK12514, PRK12514, RNA polymerase sigma factor; Provisional.	3.34052e-42
NZ_CP039339.1\|WP_064048785.1\|1463120_1466120_+\|formate-dehydrogenase-subunit-alpha	gnl\|CDD\|239153	cd02752, MopB_Formate-Dh-Na-like, Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	4.14919e-179
NZ_CP039339.1\|WP_064048790.1\|1468675_1469224_+\|superoxide-dismutase-family-protein	gnl\|CDD\|376292	pfam00080, Sod_Cu, Copper/zinc superoxide dismutase (SODC). superoxide dismutases (SODs) catalyze the conversion of superoxide radicals to hydrogen peroxide and molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the human SOD1 gene cause familial amyotrophic lateral sclerosis (Lou Gehrig's disease). Structure is an eight-stranded beta sandwich, similar to the immunoglobulin fold.	7.96171e-52
NZ_CP039339.1\|WP_064048786.1\|1466135_1466822_+\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|319893	cd16371, DMSOR_beta_like, uncharacterized subfamily of DMSO Reductase beta subunit family. This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.	8.20041e-60
NZ_CP039339.1\|WP_138928788.1\|1462811_1463066_+\|twin-arginine-translocation-signal-domain-containing-protein	gnl\|CDD\|274310	TIGR02811, formate_dehydrogenase_accessory_protein_FdhX, formate dehydrogenase region TAT target. Members of this uncharacterized protein family are all small, extending 70 or fewer residues from their respective likely start codons. All have the twin-arginine-dependent tranport (TAT) signal sequence at the N-terminus and a conserved 20-residue C-terminal region that includes the motif Y-[HRK]-X-[TS]-X-H-[IV]-X-X-[YF]-Y. The TAT signal sequence suggests a bound cofactor. All members are encoded near genes for subunits of formate dehydrogenase, and may themselves be a subunit or accessory protein. [Unknown function, General].	7.60414e-12
NZ_CP039339.1\|WP_138928793.1\|1479899_1481318_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	5.7834e-60
NZ_CP039339.1\|WP_064048792.1\|1470361_1470928_+\|dCTP-deaminase	gnl\|CDD\|234753	PRK00416, dcd, deoxycytidine triphosphate deaminase; Reviewed.	4.75786e-114
NZ_CP039339.1\|WP_064048806.1\|1478206_1478818_+\|ferritin-like-domain-containing-protein	gnl\|CDD\|372666	pfam13668, Ferritin_2, Ferritin-like domain. This family contains ferritins and other ferritin-like proteins such as members of the DPS family and bacterioferritins.	4.82004e-36
NZ_CP039339.1\|WP_138928795.1\|1484384_1485389_+\|hydroxymethylbilane-synthase	gnl\|CDD\|234612	PRK00072, hemC, porphobilinogen deaminase; Reviewed.	1.45431e-169
NZ_CP039339.1\|WP_138928791.1\|1476663_1477383_-\|hypothetical-protein	gnl\|CDD\|227648	COG5343, COG5343, Uncharacterized protein conserved in bacteria [Function unknown].	1.99403e-89

>NZ_CP039339.1|WP_064048793.1|1471002_1473282_+|arginine/lysine/ornithine-decarboxylase
MKFRFPVIIIDEDFRSENISGSGIRALAQAIEEEGMEVTGLTSYGDLTSFAQQSSRASTFIVSIDDDEFINPDNDKPEPEAVENLRSFVAEVRRRNADIPIFLYGETRTSRHLPNDILRELHGFIHMFEDTPEFVARHIIREARNYLDSLPPPFFKALIDYAQDSSYSWHCPGHSGGVAFLKSPVGQVFHQFFGENMLRADVCNAVDELGQLLDHTGPVAASERNAARIFGSDHMFFVTNGTSTSNKMVWHANVAPGDIVVVDRNCHKSILHAIMMTGAIPVFLMPTRNHYGIIGPIPQSEFEPETIARKIAEHPFASQAANKKPRILTLTQGTYDGVLYNAERIKHMLSTEIDTLHFDEAWLPHASFHPFYRDMHAIGQGRARSKDALVFATQSTHKLLAGLSQASQILVQDSETRKLDTYRFNEAYLMHTSTSPQYSIIASCDVAAAMMEAPGGTALVEESIAEALDFRRAMRKVEQEYVGTNGGNGRGDDWWFKVWGPNDLSDEGIEEREAWMLKANERWHGFGDLAEDFNLLDPIKATIITPGLDVDGKFSESGIPAAIVTKYLAEHGIIVEKTGLYSFFIMFTIGITKGRWNSMVTELQQFKDDYDNNQPLWRVLPEFVRQYPQYERIGLRELCDAIHSVYKANDVARVTTEMYLSNMEPAMKPSDAWAKMAHRETERVAIDDLEGRITAILLTPYPPGIPLLIPGERFNRTIVQYLQFAREFNKLFPGFETDIHGLVEEEIDGKMGYFVDCVR
>NZ_CP039339.1|WP_064048792.1|1470361_1470928_+|dCTP-deaminase
MSIKSDKWIRRMAEQHGMIEPFEPGQVREADGRRIVSYGTSSYGYDIRCADEFKIFTNINSTIVDPKNFDEKSFVDFKGDVCIIPPNSFALARTMEYFRIPRTVLTVCLGKSTYARCGIIVNVTPFEPEWEGYVTLEFSNTTPLPAKIYAGEGCAQVLFFESDEPCETSYKDRGGKYQGQHGVTLPKT
>NZ_CP039339.1|WP_064048791.1|1469318_1470194_+|formate-dehydrogenase-accessory-sulfurtransferase-FdhD
MPLRPELTNASVPLLDEVEVVDELGHARAVHIPGERPLTVYLDKRELVTLMTLGGAPEALVLGYLRNQRLVGSIEDIAAVQVDWETESAAVTTRAGIPDLDEKTAHRTVTTGCGQGTMFGSLMDEIDAVHLPPEARITQTTLYRVVDTIRLQQSIYKQAGSVHGCALFDAQGELLMFIEDVGRHNAVDAIAGRMWLEDMAGGDKVFYTTGRLTSEMVIKGAQMGIPFLLSRSGVTQMGYRMAQRVNLTLFARCTGRHFLLYTGRDRFIAEPGMAAVVGPRGELPQPAESGR
>NZ_CP039339.1|WP_064048790.1|1468675_1469224_+|superoxide-dismutase-family-protein
MKQLVIGLAAIGLMAGCASNAGTGASTGAPAAGTSALATLAPKSGSNVQGTIKLLQQGDNRVAMAVDIAGLPPNGMFGFHVHEKGDCSSPDGMSAGGHFNPTGQPHGDPRSGPHHAGDIPMLQSDASGKAVGSIVLNGVTLTPGATSVVGRAVVVHAGMDDYKTQPAGNSGGRVACGVIVAN
>NZ_CP039339.1|WP_064048789.1|1468264_1468597_+|hypothetical-protein
MTWSTRKMRRSGTWLAAALLGLASAMAGARLPPPTAEQKAKAEMDKAKAAWSDKVAAFQLCNAQDRAVAQYQASGKGTRTQAGAPCADPGPFVPPAPATPAAPAKPASKG
>NZ_CP039339.1|WP_138928789.1|1467084_1468239_+|formate-dehydrogenase-subunit-gamma
MMACWKHLAMALLLSGAAALASAQQPASAPAAVPANPAVQPAQPFANVVSENVFDLPRRDLAKEAQDQIARRVTQPGNNAPVWREVNSDQAGYASLPGLESGVLIQRTGQKWRLFRNGVITVWGGWLVVLVPLAILAFFLRRGQIRLKEASTGRRIERFTPTERYVHWTMAISFVTLGVSGIAMLWGKHFLLPLMGHQLFGWLTYVLKNLHNLVGPLFTVSIVVAFVMWAHDNLPRRGDLQWLLRLGGMFGGHGAEVPSHRFNAGEKLWFWGGLVVFGLILSASGWVLDRIVPGVDYYRSTMQLAEIVHAIAAVGMICLSLGHIYIGTIGMEGAYRAMREGYVDEAWAKEHHVLWYDDIQAGKIPAQRSKPPEPPEAREQPAKG
>NZ_CP039339.1|WP_064048787.1|1466824_1467061_+|hypothetical-protein
MDTIRMVATVVTLAAALAGCGERAQTAFASHRKDDAPAYKGAEGDPFMAKDWTPGDRTSWENQIRARGQYQNEYNRTP
>NZ_CP039339.1|WP_064048786.1|1466135_1466822_+|4Fe-4S-dicluster-domain-containing-protein
MARMKFICDSERCIECNACTTACKNEHEVPWGVSRRRVVTINDGMVGAEKSISVACMHCSDAPCMAVCPVDCFYRTEDGVVLHDKDVCIGCGYCSYACPFGAPQFPSQGTFGVRGKMDKCTFCAGGPEPNGSDAEFEKYGRNRLAEGKLPLCAEMCSTKALLGGDGDVIADILRNRVMKRGKGAELFGWGTAYGGAGKSAQAAPAAPTAPTAPAAPAAKPDAPVSGAY
>NZ_CP039339.1|WP_064048785.1|1463120_1466120_+|formate-dehydrogenase-subunit-alpha
MLLTRKPAAQDAKTGQASRTGAATLSGSLARGLAGALPTMDRRTFLKRSGIGVGAGLAASQLSLVKKAAAVGEARAAEGKDDIVVRRTVCSHCSVGCAVDAVVQNGVWVRQEPVFDSPINMGAHCAKGAALREHGHGEYRLKTPMKLVDGRYQRLSWEQALNEIVARMNAIRQETGPDSFFFVGSSKHSNEQSYLLRKWVSFFGTNNCDHQARICHSTTVAGVANTWGYGAMTNSYNDMQNARCALYIGSNAAEAHPVSMLHLLHAKETGCKVIVVDPRYTRTAAKSDEYVRIRSGTDIAFLFGVLHHVFKNGWEDRQFIHDRVYGMDKVRDEVLAKWTPDKVEAVCGVPEAQVRKVAEMMAMNRPSTLVWCMGQTQHTIGNAIVRASCIVQLALGNIGRTGGGANIFRGHDNVQGATDVGPNPDSLPGYYGLAAGAWKHYAAVWGVDYDWIKGRFASQAMMEKSGTTVSRWIDAVLEKNELIDQDHNVRAMFYWGHAPNSQTRGLEMKRALDKLDLLVVIDPYPSATAAMANMPAADGTPPNPNRAVYLLPAATQFETSGSCTASNRSLQWREKVIEPLFESQPDHVIMQALADRLGFGNELSKQLKVTEYKRAGMAWREPGTDSILREINRSNWTIGYTGQSPERLQAHMRNMHLFDVRTLRCQGGKDPVTGYDLTGDYFGLPWPCYGTPELKHPGSPNLYDTSKHVMDGGGNFRANFGVERDGVNLLAEDGSYSLGAELTTGYPEFDHVFLKKLGWWDDLTDVEKKAAEGKNWKTDLSGGIQRVAMKHGCHPFGNAKARAVVWNFPDPIPQHREPLYSTRPDMVAQYPTHDDKKAFWRLPTLYKTVQQRNIENKVYEKFPIILTSGRLVEYEGGGEETRSNPWLAELQQENFVEINPKAAADRGIRNNDYVWVKTPTGAQIKVRALVTERVGVDHAFIPFHFSGWWQGKDLLDYYPEGAHPIVRGEAVNTATTYGYDSVTMMQETKTTVCQIERFA
>NZ_CP039339.1|WP_138928788.1|1462811_1463066_+|twin-arginine-translocation-signal-domain-containing-protein
MAMPDPKTNPHAPAQADTGDAGPARRRFLVGAAVAVAAAGAATAGRLAQPQACDAAEPAEPADDKATGYRLTEHIRKYYRTTWV
>NZ_CP039339.1|WP_138928790.1|1473815_1474490_+|DUF433-domain-containing-protein
MLTVGKAVSAAEVAFMANLSDKEINRMVDEDVLPSALVVRDHGRRFAPLAAPFATFYFRSSEELTRAARVRVIATLTERLLDRPDRDAFLFLRTRVTKAKFDWSVSYSDVTVFLATYVREAAERAARVDQAARHIVEDPEILGGTPCFKGTRVPIANVLAALDAGMSVVELQASYPFLTQALLNDATVYAKARPRVGRPRRIAETLPGAQLVRSKVVRPARENA
>NZ_CP039339.1|WP_064048802.1|1474486_1474903_+|DUF5615-family-PIN-like-protein
MTYQFLIDECLWPGLVKLAQGAGHWGSTCARDRELVGMKDHKLIRYVVEGDYTLVTHNAVDFRGREGGPVGGLYSREPIHAGLVCLVSDHPMTPDRQMRLFGYALKEIALMSDLVNQALEVKEDLSGEVTINVYQIPV
>NZ_CP039339.1|WP_064048803.1|1475138_1476554_-|argininosuccinate-lyase
MTSQLAKKAEAWSARFNEPMSDLVKRYTASVFFDKRLALFDIQGSLAHAAMLAKQGIIAEADRAAIEQGMAQIRQEIEAGTFEWKLDLEDVHLNIEARLTAMAGDAGKRLHTGRSRNDQVATDIRLWLRSEIDNIVGLLKALRGALLDLAEQHTNTIVPGFTHLQVAQPVVFGHHLLAYVEMFTRDTERMLDARRRVNRLPLGAAALAGTSYPIDREFVAQQLGFDGVCRNSLDAVSDRDFAIEFCAAAALVMTHISRFSEELVLWMSPRVGFIDIADRFCTGSSIMPQKKNPDVPELARGKTGRVNGHLIGLLTLMKGQPLAYNKDNQEDKEPLFDTVDTVVDTLRIFADMVPGITVKADAMRAAALQGYATATDLADYLVKRGLPFRDAHEAVAHAVRACDDLRCDLADLSVAQLREISGLGDKANLIGDDVHAVLTLEGSVASRNHIGGTAPEQVRLAIVAARAGLAG
>NZ_CP039339.1|WP_138928791.1|1476663_1477383_-|hypothetical-protein
MDPRRQPDLIDRLAAEYAVGTLRAGARRRFEQLIRHDAGVRTTVERWQRYLADLPALQPASAPLPEILCRVEVQLGWRRPEPRRRTRWQQLWHGTGFWRVAAAATAIVAVVAIGLNLRLARQLHEAPVASAVAVLQDAQAQAAVLVTWDARTGTLSLKRLDATPLTSQQALQLWALPPDGHPRSLGVIGHQRAMRLMPAQPLARVPALAVSVEPRGGSPDPNGPTGPVIFKGALIDSAL
>NZ_CP039339.1|WP_138928792.1|1477382_1478024_-|sigma-70-family-RNA-polymerase-sigma-factor
MPSLERTAADHAGQDAGRPPIAARAPGTEADELAALLQRIGLGEREALRALYARCAAKLFGLALRILVRRDWAEDVLQESFVNIWRHAADYRPQLAAPMTWMATIVRNRALDCLRRQRAERVAESVPLDDAHADALADHAPGPADLALAGQQARALAECLKRLDPRQREVVSLAYLRDLSHSELAQVLSVPLGTVKSWMRRGLDRLRECLGKP
>NZ_CP039339.1|WP_064048806.1|1478206_1478818_+|ferritin-like-domain-containing-protein
MDTTKDVDVAQFDADLPRIDVRRRVLLRTPGLLALGSLAAVSLGRSMPAWAQTQSGSVKDDINILNTALGLEYQAIAAYQVGAESGLLQKPVLATAVKFQGHHKAHAQVLSGTVSKLGGKPVMEKTMAEYNFPVSQLKTQADVLRFAAGLEKGATSAYLGVLPNFYTRDLTKAAASILGDEAMHWAILLSVLGEDPVPVAFVG
>NZ_CP039339.1|WP_064048807.1|1478888_1479773_-|LysR-family-transcriptional-regulator
MNWDNARIFLAVARTCTLRGAAQRLGVDQATVGRRIAALEAELSAKLFLRTSTTLVLTPAGEALIGPAETMEHAAHTIERRVAGTDEQLAGTIRVATTDTLAAAFVLPAIAQLRLRHPGIDIVCLAAKSIANLTKREADVAVRTLRPTAPDLIARRVATIETGLYASRAYVRARGEPAEGTAFAGHDLVLYPRSEVPWMWEALCGEPVTPSRVVLQSSSAMTIFEAVVAGIGMSELVCCRADAHPELVRVLPGRRRMQDVWLVTHADLHKTARVRALMDCIVEAFDAHKETAAP
>NZ_CP039339.1|WP_138928793.1|1479899_1481318_+|DHA2-family-efflux-MFS-transporter-permease-subunit
MPTREAPAAHAAGIVPSSDSGRWRRNATLGILTSGVFMAVLDTTVVNVALNAMRASLHSSVAGLAWIVDAYTLAFAACILTGGLLTDRIGARTVFLAGMAVFIAASAACGLAPSVAALIAARVVQGVGAAMFLPSSLSLVRATFEDPRERAWAIGLWGGIVACAAAVGPALGGFLVDAHGWRSAFLINLPLGVAGMAGTWLIVRHAPSARARPFDWAGQATSAVTLAALCFVAIEWPVLGTRSPWVWGAVLLAAGAAALFIMAECRARAPLVPLAWFAHRTLGAVNGVGFLMNFGYFGALFVLSLHLQNVEHFTARQTGLVLLPLAVSLSAGNLFAGKLMARFPMPDMMVGGLLIGGAGLLMTSSALRAHAPIWLACAATVAFGGGTALAIAPMTSSILAAVPGELAGTASGLLNAARQAGSLLGVAAAGAIITVVPDVARALPTAFTVMAVSYAGAVAMAWLGRRPATALA
>NZ_CP039339.1|WP_138928794.1|1481318_1484276_-|phosphoenolpyruvate-carboxylase
MTQSAARRATSRATPARKTPPAPASQTRAPSPGGTAGTALGPTSRRSAGSAAAKDQPLKEDIRFLGRLLGDVLREQEGAAAFETVETIRQTAVRFRRDGDRQAEQELDRLLKTLSRDQTTSVVRAFSYFSHLANIAEDQHHNRRRRVHALAGSSPQPGSLLRALLSAADEGLSGDALRRFFDTALIVPVLTAHPTEVQRKSILDAQREIARLLAERDAPLTVRERERNVTLLRAHVTKLWQTRMLRTTRLMVADEIENALSYYQTTFLREIPALYRELEEDVATVFPRRGARGEPAPLPAFFQMGSWIGGDRDGNPFVTAQTLRHAAQRQASVILTWYLDEIHALGAELSMSTLLVDVSADLLALAERSPDHSEHRADEPYRRALIGVYARLAATCRELTGEDAGRHAVGPAPAYTSAEELRADLQIVIDSLAAHHGEALADARLTSLARAIDVFGFHLASIDLRQVSDVHEATVAELLRVAGVEGAYAALSEADKRTLLLRELQQPRVLALPFHAYSETTASELDIFRAAREARARYGSRIVRNYIISHTETLSDLLEVMLLQKEAGMFRHGTNGSGGAGLDVMVIPLFETIEDLRNAPQIMGDLLALPGFDAVLAAQGNEQEVMLGYSDSNKDGGFLTSNWELYKAELALVELFERRGVRLRLFHGRGGTVGRGGGPTYQAILSQPPGTVNGQIRLTEQGEIISSKFANPEIGRRNLETIVAATLEATLLPTRNRPKGLEEFEAAMQALSDHAFSAYRDLVYETPGFKDYFFATTPITEIADLNLGSRPASRKLMDRKQRRIEDLRAIPWGFSWGQCRLLLPGWFGFGSAVQRWLDEAGSAKAKAARLATLKRMHKQWPFFANLLSNMDMVLSKADLNVASRYAQLCEDRKLRNAVFSRISAEFTLTEQVLGTITGQSERLADNPLLARSIKNRFPYLDPLNHLQVELLKRFRSGKAGSNDARVRRGIHLSINGIAAGLRNSG
>NZ_CP039339.1|WP_138928795.1|1484384_1485389_+|hydroxymethylbilane-synthase
MSSNARPTSVESPLAAQAPTRLVIASRESRLAMWQAEYVRAALQKYYPACDVSILGMTTRGDQILDRSLAKVGGKGLFVKELEVALAEGRADLAVHSLKDVPMELPAGFALSAILEREDPRDAFVSNDYADLAALPAGAVVGTSSLRREASLRARFPHLVIQPLRGNLDTRLSKLDRGDYAAIILAAAGLKRLGLSERIRAVIAPETSLPAAGQGALGIESRVDRHDVQAWLAPLHHTPTALAVTAERAVSRQLGGSCQVPLAAFAQWTDAGALRLRAFVASPDGRRKLAAEAEATPATPAEAEALGARVAQQMLDGGAHDILATLGADAPPAT

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Crispr_ID: NZ_CP039339_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP039339_2

2773390-2773584

Orphan

Consensus_repeat	Method
ACAACGGCACGATCGACACGCTGACCAACAACAGCAGCGGCACCATCAGCA	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP039339_2

>merge|NZ_CP039339|2|2773390-2773584|PILER-CR
ACGCCGGGTCGATCGGCACGCTGACCAACACCAGCAGCGGCACCATCAGCACGTCCGACGGCGTGTACGGCGTGTACAACACGTATATGATCGACACGCTGTCCAACAGCGGTCTGATCACCGCCGCCACGCGTGGCATCCTCAACAACGGCACGATCACCACGCTGACCAACAACAGCGGCGGCACCATCAGCA

>NZ_CP039339|2|2|2773390-2773584|PILER-CR
ACGCCGGGTCGATCGGCACGCTGACCAACACCAGCAGCGGCACCATCAGCA	CGTCCGACGGCGTGTACGGCGTGTACAACACGTATAT
GATCGACACGCTGTCCAACAGCGGTCTGATCACCGCCGCCACGCGTGGCAT	CCTCAACAACGGCACGATCACCACGCTGACCAACAA
CAGCGGCGGCACCATCAGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP039339.1\|WP_138929284.1\|2776081_2778184_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|379204
NZ_CP039339.1\|WP_064048240.1\|2765342_2765546_+\|cold-shock-protein	unknown	unknown	gnl\|CDD\|224197
NZ_CP039339.1\|WP_020832976.1\|2781902_2782178_+\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	unknown	unknown	gnl\|CDD\|376852
NZ_CP039339.1\|WP_138929758.1\|2783801_2785475_-\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	unknown	unknown	gnl\|CDD\|225387
NZ_CP039339.1\|WP_138929757.1\|2782687_2783677_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039339.1\|WP_064048249.1\|2763195_2764740_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|187710
NZ_CP039339.1\|WP_138929285.1\|2778180_2779341_+\|glycosyl-transferase-family-8	unknown	unknown	gnl\|CDD\|223928
NZ_CP039339.1\|WP_064048235.1\|2772030_2772726_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP039339.1\|WP_064048243.1\|2760117_2760954_-\|cytochrome-c	unknown	unknown	gnl\|CDD\|224921
NZ_CP039339.1\|WP_138929286.1\|2779353_2780256_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|238382
NZ_CP039339.1\|WP_138929290.1\|2785545_2786436_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039339.1\|WP_064048239.1\|2766120_2766957_-\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379330
NZ_CP039339.1\|WP_138929282.1\|2770033_2771965_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NZ_CP039339.1\|WP_138929281.1\|2767242_2768532_+\|TIGR03862-family-flavoprotein	unknown	unknown	gnl\|CDD\|274820
NZ_CP039339.1\|WP_138929288.1\|2781296_2781674_-\|type-II-toxin-antitoxin-system-mRNA-interferase-toxin,-RelE/StbE-family	unknown	unknown	gnl\|CDD\|379750
NZ_CP039339.1\|WP_064048237.1\|2768558_2769689_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|225443
NZ_CP039339.1\|WP_138929287.1\|2780252_2780798_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|223603
NZ_CP039339.1\|WP_138929289.1\|2782188_2782530_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|368240
NZ_CP039339.1\|WP_064048241.1\|2764821_2765028_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039339.1\|WP_138929280.1\|2761388_2762567_-\|antibiotic-hydrolase	unknown	unknown	gnl\|CDD\|226708

Protein	Function_ID	Function_description	E-value
NZ_CP039339.1\|WP_138929284.1\|2776081_2778184_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|379204	pfam13469, Sulfotransfer_3, Sulfotransferase family.	3.72427e-46
NZ_CP039339.1\|WP_064048240.1\|2765342_2765546_+\|cold-shock-protein	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	1.79875e-32
NZ_CP039339.1\|WP_020832976.1\|2781902_2782178_+\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	gnl\|CDD\|376852	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system. Members of this family act as antitoxins in type II toxin-antitoxin systems. When bound to their toxin partners, they can bind DNA via the N-terminus and repress the expression of operons containing genes encoding the toxin and the antitoxin. This domain complexes with Txe toxins containing pfam06769, Fic/DOC toxins containing pfam02661 and YafO toxins containing pfam13957.	6.74689e-12
NZ_CP039339.1\|WP_138929758.1\|2783801_2785475_-\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	gnl\|CDD\|225387	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion].	7.3263e-170
NZ_CP039339.1\|WP_064048249.1\|2763195_2764740_+\|hypothetical-protein	gnl\|CDD\|187710	cd09614, griffithsin_like, Jacalin-like lectin domain of griffithsin and related proteins. Griffithsin is a lectin isolated from a red alga, which has shown potential as an inhibitor of viral entry, exhibiting antiviral activity against HIV and SARS. The biological functions of griffithsin and griffithsin-like proteins with respect to their source organisms are not known.	1.45292e-45
NZ_CP039339.1\|WP_138929285.1\|2778180_2779341_+\|glycosyl-transferase-family-8	gnl\|CDD\|223928	COG0859, RfaF, ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane].	4.18839e-06
NZ_CP039339.1\|WP_064048235.1\|2772030_2772726_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	5.73051e-57
NZ_CP039339.1\|WP_064048243.1\|2760117_2760954_-\|cytochrome-c	gnl\|CDD\|224921	COG2010, CccA, Cytochrome c, mono- and diheme variants [Energy production and conversion].	4.56304e-09
NZ_CP039339.1\|WP_138929286.1\|2779353_2780256_+\|alpha/beta-hydrolase	gnl\|CDD\|238382	cd00741, Lipase, Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.	0.00674262
NZ_CP039339.1\|WP_064048239.1\|2766120_2766957_-\|SAM-dependent-methyltransferase	gnl\|CDD\|379330	pfam13679, Methyltransf_32, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.29314e-66
NZ_CP039339.1\|WP_138929282.1\|2770033_2771965_-\|sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	2.25203e-47
NZ_CP039339.1\|WP_138929281.1\|2767242_2768532_+\|TIGR03862-family-flavoprotein	gnl\|CDD\|274820	TIGR03862, flavo_PP4765, uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.	6.99869e-169
NZ_CP039339.1\|WP_138929288.1\|2781296_2781674_-\|type-II-toxin-antitoxin-system-mRNA-interferase-toxin,-RelE/StbE-family	gnl\|CDD\|379750	pfam15738, YafQ_toxin, Bacterial toxin of type II toxin-antitoxin system, YafQ. YafQ is a family of bacterial toxin ribonucleases of type II toxin-antitoxin systems. The E.coli gene is expressed from the dinB operon. The cognate antitoxin for the E. coli protein is DinJ, in family RelB_antitoxin, pfam02604.	2.66607e-33
NZ_CP039339.1\|WP_064048237.1\|2768558_2769689_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|225443	COG2890, HemK, Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis].	3.67113e-32
NZ_CP039339.1\|WP_138929287.1\|2780252_2780798_+\|adenylyl-sulfate-kinase	gnl\|CDD\|223603	COG0529, CysC, Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism].	3.83367e-94
NZ_CP039339.1\|WP_138929289.1\|2782188_2782530_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|368240	pfam05016, ParE_toxin, ParE toxin of type II toxin-antitoxin system, parDE. ParE is the toxin family of a type II toxin-antitoxin family. It is toxic towards DNA gyrase, but is neutralized by the antitoxin ParD. The family also encompasses RelE/ParE described in.	3.03454e-12
NZ_CP039339.1\|WP_138929280.1\|2761388_2762567_-\|antibiotic-hydrolase	gnl\|CDD\|226708	COG4257, Vgb, Streptogramin lyase [Defense mechanisms].	1.08187e-137

>NZ_CP039339.1|WP_064048235.1|2772030_2772726_-|response-regulator-transcription-factor
MCPSSTAPEQPSIRVAIVEDDPGFLDALTRALACAPDMHLTGVAGSRAEGLLLLDGAPADVLLVDLGLPDGSGIDVIEAAARKWRACSIMVSTNFGDEIHVMRSIEVGAAGYLLKDSSAARILDEIRSLAGGGSPISPIIARQILARFRQGGSRSAADEAPAPASSPLLSAREKEVLDLITKGFTAQEIAKLMALSHFTVRTFVRRIYSKLKVTSKAEAIYEARTLGLLDD
>NZ_CP039339.1|WP_138929282.1|2770033_2771965_-|sensor-histidine-kinase
MRYRPTHLPAYAIFVFSMALLVIVGAIYLDADGESLPAANLHLTQAEWQVTDARGFTPPPPTLDSNSLPNAWRPVALPLDLPIALLRQAHANAVTTAGQTTWLKLAVPRLPPHSGPLALYGIRVKTDGTIAVYANGELVHRAQQQGPLWNSTRTPLWVVLEPRADDAPVREILIRLEHTERTQVALSSLWLGPVETLRVRYHVRQWLQQELPSMLSAAFLAVGIFALFVWFKRRHETGYLLFFNLAVTSFLRGLHFYVGLPVANDGFAWLTVNSLLWLVTVVHFFLCQLHGRPLTGFTRALVGVTGLIGVLTLPGLAVLPNTPKVTPLIYPMAALMGAAVGLVGGISAWRRSNEGVLVAIGVSICTLLGVSDWLLQNNFVSPEGWYFGAYANAITFGIFGILMYRRYVNAISEVELSNANLAQRLKHREAELESSHQRLREVERQQTISAERQRLMQDMHDGLGASLISAIRSVERGAVSDAKVSQILKNCLDDLKLTIDSMEPVEADLLLLLATLRFRLEPRLEGTGIALLWEVRKLPTLTWLDPSSALHILRIVQESIANILHHTQASEIRVGTAMESAGVLVTIVDNGRGFDVEKTLAAGKGNGLRNLQRRAQAIDGTVRWTSGPEGTQFTLWLPLERHA
>NZ_CP039339.1|WP_064048237.1|2768558_2769689_-|class-I-SAM-dependent-methyltransferase
MTDHPILSWTDAETATAHTARWRSEAGTPPPKRVTVADDRITADAAYRQACEGIAILWRGDFQNARQLLQAMSRRADRKPRKAATSPLDAFNLHRQAQSQRARTLGMLLIPLDADYTIPLRRAPDVHEACTEAYGAGEDASVVSLRELLGLIGAHEWRKKGVDIPALGGARIHPHYGVFSPVRGEYIDLVAKASLPSQALAFDIGTGTGVLAAVLAKRGVKRVVGTDQDARALACAHENLTRLGLQSQVEVIEADLFPEGRAPLIVCNPPWLPARPSSPIERAVYDPDSRMLRGFLDGLAAHLEPGGEGWLILSDFAEHLGLRTRDALLAMIDAAGLQVVGRDDIKPQHPKASDATDPLYQARAAEVTSLWRLKAR
>NZ_CP039339.1|WP_138929281.1|2767242_2768532_+|TIGR03862-family-flavoprotein
MSEPHNAPLVAVIGAGPAGLMAAEVLSRAGVRVEVFDAMPSAGRKFLLAGIGGMNITHSEAFDAFLGRYRARREQLAPLIDRFSPDALRDWVHGLGIETFIGSSGRVFPTDMKAAPLLRAWLHRLREAGVKLHMRHRWVGWRAALSDQTDQADQPEALRFDTPDGERLVHADAVVLAMGGGSWPRLGSDGAWVPRLEARGVQVRPLKPANCGFDADWSAHFRERFAGRPVKSVAIGIASGDNGALQFRQGEFLVTQTGIEGSLVYALSAPMRDALEAGGDITIRLDLAPGWSAQRVADALMRPRGARSMSSHLQSRLNITGVKLGLLRECLSKDAFADLAQLALAIKALPLRLTRARPIDEAISSAGGVAFEALDANLMIARLPGVFCAGEMLDWEAPTGGYLLTACFASGAAAGHGVLAYLAAAALRG
>NZ_CP039339.1|WP_064048239.1|2766120_2766957_-|SAM-dependent-methyltransferase
MSNKTHEIRPNQSIELLKELHILTRDGKMNQDSRRKLKQVYHLFQFIEPLLDDVQKAKGHVSLVDHGAGKSYLGFILYDLFFKEQPGDGASHIYGIETREELVAKSTELAARLGFKGMSFLNVSVAESITSERLPPTVDVVTALHACNTATDDAIRFALEKHAQYIVLVPCCQAEVAGVLRRNKGKSLGNALTEIWRHPLHTREFGSQVTNVLRCLQLEAHGYQVSVTELVGWEHSMKNELIVAQYKDLPRRRPTERLAEVLSTLGLEELRERFFAPA
>NZ_CP039339.1|WP_064048240.1|2765342_2765546_+|cold-shock-protein
METGTVKWFNESKGFGFITPDAGGNDLFAHFSEIQGSGFKTLQEGQKVRYVAGVGQKGPAATKIEQI
>NZ_CP039339.1|WP_064048241.1|2764821_2765028_-|hypothetical-protein
MTLCPACQAIELHKLGAPGHALLRITDTQRLKPAKAAAITISTFVCQTCGTFWTYRDQKDGSEQGWQR
>NZ_CP039339.1|WP_064048249.1|2763195_2764740_+|hypothetical-protein
MLKEENTPVISTEREASEFVSVPLPASLFQGTDSVSGSGLSTAVDGSYATHGGTSSVVYQVAMDLDTLYKSLDVSQSVSVGFGPIGGVSEKSEFVQTLRLTTFSVNIVVRAKHVMGTDTATAFKLKSGINPPSGNSQLREFFRSYGDAFVSSITTGSEYYAVYTFYAQSKEEQQSVSVELKANGIFDFGSVDASLQTKLNKVTTSTQVRLAFNQNISGIANPKFPKPDDMIDYALAFPSLPIDAPAIVAFAVTGYEHVPNMGGFDPVAKNREFLIGPDGGGGLSRYLVAETELLNQIEWLKKIYAFYQGFKDSKVDDVQREAQANLEALNAQFLLYESDPTATLIKPALPSLDMGTPMLEYGVAQSPARGGNGGSPFNDVDINTYIQNQTYVSAVQLRTGSEVDALIVTYQATAKSTSMQTYHGGGGGSFSQTLQVRPGQFIKKLSGRSGSRVDQLRITLDDDRSVAGGGGGGSPFDWQVPSGSVMMGFAGRSGSRLDQVEAVYATLKPASWKK
>NZ_CP039339.1|WP_138929280.1|2761388_2762567_-|antibiotic-hydrolase
MKHMLYLAAPAIVGAALLCLPAPSSAAANTASANAVIGEFATPSAASSPQGVDVAGDGSVWYSETTAGKIAVLRPDGSSAEFPVPNGGQPFILKVADDGVWFTDSGTRAIGHLDPATGKVESYKIPSGASPFFIQVGPDGSKWFTETAGIGRLSPNGEFTEWTVTLEHADDNMEQLSLDPWGNVWFVERNFDGIGAAGTNKVRRFNPYSNVISTYKVPTLGGTPSGVVANANGSVWVSEYYANAIALLNPFAAPHSDEVVQPTTLKADSQTASVSPIRAARTPGEKTQVTPSAHTVKPSVTLGWIEYPLPTAKAEPEDMRVDRHGRVWFEADAGFIGRLDPFEARITEYAIPSANSGYYNIALDKHSGLLWFTEAGVFAPVATKIGYLDTRH
>NZ_CP039339.1|WP_064048243.1|2760117_2760954_-|cytochrome-c
MLKRVLFAVFLLTVSVIGHGAIAEPKVELTIGGKTQSFTQQALLARPDAATIQVPRDVAYGTSATYRAVPLPNLLDGAVVPADSVLEARATDGFAAQLPMDLVRNSNPAGAVAWLAVEDPAHPWPKLPGKAVSAGPFYLVWIGKDAASVRSEQWPYQVAQLTTQPSPATRWPALNVDPALPATDRVRAGQSLFITQCFACHKFNHAGSATVGPDLNMPMNPTEYFQPGILHRYIRNPASVRDWPARTMPAFPPDHLTDREIDLIVAYLKHMAPRKVGK
>NZ_CP039339.1|WP_138929284.1|2776081_2778184_+|tetratricopeptide-repeat-protein
MSLPPSRPETLSIPEALNRAHAHWSAGQAAQAELLCQRVLAAWPGQADALHLLGLMAHAYGHLDLAIAHLRQACLAPRAPAAYSSNLAEMYRQKGLLAEAEDAARRAVAMDPALVSGWNNLGIVLQEAGKFAESLDCLERVIVLQPDGAQAHNNLANTLRRLERLERAESHYRQALELDPAYAEAHSNLAFLLSAQGRHDEAAAAAQHAIELSPRLVDAYLNLAEAEVGRHRHEAALQVLDRLSTFAPQHPAVLTARANVLKRAERPDEALAVARQAVMLAPRSAEAHHALATALQTLGQTDEALPHFEQAARLPGAVAEEALVGRATLLMEAGRRDAALAAFDQALAQFPGSVQALAGRADARTFTAGDPDIAALEACLADGERRSLRDRISAHFALGKAYLDLQDPARAFHHLDAGNRQKRSTFTYDGAASSRWMERIAEAFSPALHDRLHATGEPSALPVFIVGMPRSGTTLIEQIVSSHPQVMGAGELSALRLVVEGSGLFPDGMQGLAGEARGALFRQLGQAYLSRVAPLAQGRARLVDKMPSNFLYAGLIPLILPGARIIHARRDPVDTCLSCYTKLFAGEQQFAYDQAELGALYHGYARLMAHWRAVLPPGCFIEVDYEAVVDDLEGEARRLIDFLDLPWNPACLNFHDNRRVVRTASVNQVRQPIYTTSKGRWQAYADYLGPLLEALGVEAP
>NZ_CP039339.1|WP_138929285.1|2778180_2779341_+|glycosyl-transferase-family-8
MMSGTLSAVQAIEHQVRPLLAAGRFEEAEALLRPPLASGSGPLVLWKLLAAALRPQGRIAETRAIQEMLVAHAPGDFPTRFDLSETLLLGEFERGWREYRYRYSLAHTAAIERKVQRPRWSGQPIPGQTLLIHDEQGFGDTFQFLRMVPWAKARSGARVILEVNAETLSLAQRGTGFDHIVARGSLPPAFDAHCELMSLPMAMGLKPSDLPGQVPYLSADPQRIAQWQQRLTGLPRPLVALVWAGRPTHFNDANRSLTLARLAPLAHPGATFLAIQKGPAVAQSADPPPGMSLVPLSDDIRDFEDTAAILSIADLLISVDSAPVHLAGALGRPAWVMLPFVPDWRWLLERTDTPWYPGMRLFRQHARGNWDGVLSAMAGELARLAA
>NZ_CP039339.1|WP_138929286.1|2779353_2780256_+|alpha/beta-hydrolase
MLKLMSTRSGARDVAAGLSGTLLLMSLMSGCTVLDRNARAEAQAAPAGLHREQLDTGSFVLTAYSRIARPDAPLDLYIEGDGLAWISRSEPSLDPTPREAVGLALAAADPAPNVVYVARPCQFTPMAINPRCGVPYWTGKRFAPEVVASIDQAVSHFAAKVPGQRIHLIGYSGGGALAVLVAARRTDVASIRTVAGNLDHVLVNRLHDVSSMPQSENAIDFAQRVASIPQVHFSGADDAVVPPIVAQRFVDATGKRCAQARTVPGITHGGNWSRLWPLLLGVMPVCSEPSGIHREHQAKE
>NZ_CP039339.1|WP_138929287.1|2780252_2780798_+|adenylyl-sulfate-kinase
MMPSPSTLWLTGLSAAGKTTLAHALAEALTAAGTACQMLDGDAVRQALSRDLGFSRADRSENIRRVADRCRQLNDAGLWAIAAVISPYRADREQARRTVGEPRFFEIHLATPLTVCERRDPKGLYRRARAGEIAHFTGISDAYEVPQHPDLRFDTATQSVAECVAATMAWLAAASGNAMTP
>NZ_CP039339.1|WP_138929288.1|2781296_2781674_-|type-II-toxin-antitoxin-system-mRNA-interferase-toxin,-RelE/StbE-family
METLDYCAKCWTLVQRSDASSVPDRTSSKRATPPRASDYTKTFLKGWERLSRSGRYDLKRLKEAMLHLIANDAPLGPEWLDHPPKGDWADHRECHIGGGFLLIYRLDGNAIMFVRAGTHSELFEE
>NZ_CP039339.1|WP_020832976.1|2781902_2782178_+|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin
MRFSSHVKPISYLKANAAEVLTQLAEQREPLVITQNGEAKAVLQDVASFEETQETLALLKILALGHQDVEAGRVKPVADVVARLRTKRATT
>NZ_CP039339.1|WP_138929289.1|2782188_2782530_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MGSKPTRYEVLLTQGAEQDLESIHDYVAEFDCVENANHVLDQLMEVVESLAQFPERGSYPKELVALGIKEYRQTAFKPYRVIYRVLGSQVVIYLTVDGRRDMQSVLAHRFLSA
>NZ_CP039339.1|WP_138929757.1|2782687_2783677_-|hypothetical-protein
MESEWRGYHVTYAFSCSAGHTFSRQATSVVYVKPPAPCPHCEREAMRQRFLAMATERGGICLENDYLGPEVRHRMRCQHGHEWLALGRKLLEGSWCHTCARETINAKTRARSKRLEDLQAKAAERGGQCLASEYRGARAHHELICAQGHRWMSTGNEILRGTWCRLCAYREVSERKTDPEGLSRIQAAAQARGGACLDEVYLGQSARYRFQCKEGHVWKTAGQNVLNGGWCRSCHHESRRLGIEAMQAVAHARGGRCLSETYINKARRLTWECHHGHVWQTSPRSVFAGHWCPSCAILDRIRAKNQHRRERYEATRKLDTVSSPKRIKV
>NZ_CP039339.1|WP_138929758.1|2783801_2785475_-|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein
MAVLLFGAAASTALAQVAPAPVAGPGPEVQRLQEQQTDQARDRANARPDVFTAPAPAQPISLSALPKETPCFPIQGIVLEDNVFNWLPYLLQPVNGQCVGKQALEAIELQANNALIEHGYVTSRVLIPQQNLASGTLRLKVLPGRIGAIRNASDGNIGWARMALLAGPGDLLNQRDLDQALETVRRLPGQSEASFDIVPGAQVGESDIVFKPGTDKRWHATLSADNTGLKNTGKYQMSGSLVIDSPLHLYDQLAISASSNTDRGAATQGTRSYSINWSVPVGYATVFVGANRSRYRQTVAGFEDPIVYSGQSSEVNLGISGVLHRDATSRTGAQFKVFRKINRNYLDDTEIEVQRRDVVGYEASMSHRHYVGPVALDGGIAWRETLPDQSNVPGVVVGDATYGGRSQIETANASLYWPFKLASQVFEFSSNWAIQHARTRVLPSDYFTIGNRYTVRGFDGQLTLSAEDGWYWRNELAWRVAGQAIYGGIDVGKVHGPSAESLLGEQLVGAVIGVRGRVPSGRYAAVNYDLSFGWPLSKPEGFRTERPAVMAQVGVEF
>NZ_CP039339.1|WP_138929290.1|2785545_2786436_-|hypothetical-protein
MHTHSLRAMRIIAAAVLALAALPALAVENDLLADHQQRLASAQAEGSAAKSNADKARALRRQAAELDALGKSAEALSVIDEALKLAEPGQDKDFVATKAGILFSLNDPQGALALLAPQLDATRKFAERAGAERRMSALGFFTEGFITATFAHIQLEQWREAIATLADAEAPLEGPSFYAYRSLVYRYIMGRAKDAALANPQLEKMAAYYAQNDKGHYGALLRLWQGEDTRQELAALIAGMPGQEQQEASGEVLFYSAAYAKFIKGDAEAARTMLGSLNRVAPYGSIEWIYGKRVLQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP039339_1	1.3\|1473633\|31\|NZ_CP039339\|PILER-CR,CRT	1473633-1473663	31	MN270270	Streptococcus phage phi-SsuJS7_SSU0237, partial genome	42708-42738	5	0.839
NZ_CP039339_1	1.3\|1473633\|31\|NZ_CP039339\|PILER-CR,CRT	1473633-1473663	31	MK448819	Streptococcus phage Javan599, complete genome	36798-36828	5	0.839
NZ_CP039339_1	1.2\|1473572\|31\|NZ_CP039339\|PILER-CR,CRT	1473572-1473602	31	NZ_CP049244	Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence	724978-725008	6	0.806
NZ_CP039339_1	1.2\|1473572\|31\|NZ_CP039339\|PILER-CR,CRT	1473572-1473602	31	NZ_CP020331	Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence	401576-401606	6	0.806
NZ_CP039339_1	1.2\|1473572\|31\|NZ_CP039339\|PILER-CR,CRT	1473572-1473602	31	NZ_CP043499	Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence	163918-163948	6	0.806
NZ_CP039339_1	1.6\|1473632\|32\|NZ_CP039339\|CRISPRCasFinder	1473632-1473663	32	MN270270	Streptococcus phage phi-SsuJS7_SSU0237, partial genome	42707-42738	6	0.812
NZ_CP039339_1	1.6\|1473632\|32\|NZ_CP039339\|CRISPRCasFinder	1473632-1473663	32	MK448819	Streptococcus phage Javan599, complete genome	36797-36828	6	0.812
NZ_CP039339_1	1.2\|1473572\|31\|NZ_CP039339\|PILER-CR,CRT	1473572-1473602	31	NZ_CP045074	Paracoccus kondratievae strain BJQ0001 plasmid unnamed1, complete sequence	89095-89125	7	0.774
NZ_CP039339_1	1.2\|1473572\|31\|NZ_CP039339\|PILER-CR,CRT	1473572-1473602	31	NZ_CP011314	Klebsiella pneumoniae subsp. pneumoniae strain 234-12 plasmid pKpn23412-362, complete sequence	131439-131469	7	0.774
NZ_CP039339_1	1.5\|1473571\|32\|NZ_CP039339\|CRISPRCasFinder	1473571-1473602	32	NZ_CP049244	Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence	724977-725008	7	0.781
NZ_CP039339_1	1.5\|1473571\|32\|NZ_CP039339\|CRISPRCasFinder	1473571-1473602	32	NZ_CP020331	Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence	401576-401607	7	0.781
NZ_CP039339_1	1.5\|1473571\|32\|NZ_CP039339\|CRISPRCasFinder	1473571-1473602	32	NZ_CP043499	Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence	163917-163948	7	0.781
NZ_CP039339_1	1.2\|1473572\|31\|NZ_CP039339\|PILER-CR,CRT	1473572-1473602	31	NZ_CP039708	Lactobacillus paracasei strain Lp02 plasmid pLp02-1, complete sequence	19825-19855	8	0.742
NZ_CP039339_1	1.2\|1473572\|31\|NZ_CP039339\|PILER-CR,CRT	1473572-1473602	31	NZ_CP014987	Lactobacillus paracasei strain IIA plasmid unnamed2, complete sequence	29358-29388	8	0.742
NZ_CP039339_1	1.2\|1473572\|31\|NZ_CP039339\|PILER-CR,CRT	1473572-1473602	31	NZ_CP035565	Lactobacillus paracasei strain SRCM103299 plasmid unnamed2	34755-34785	8	0.742
NZ_CP039339_1	1.2\|1473572\|31\|NZ_CP039339\|PILER-CR,CRT	1473572-1473602	31	NZ_AP018394	Lactobacillus paracasei strain IJH-SONE68 plasmid pLPS-2	1604-1634	8	0.742
NZ_CP039339_1	1.2\|1473572\|31\|NZ_CP039339\|PILER-CR,CRT	1473572-1473602	31	NZ_AP018394	Lactobacillus paracasei strain IJH-SONE68 plasmid pLPS-2	40194-40224	8	0.742
NZ_CP039339_1	1.2\|1473572\|31\|NZ_CP039339\|PILER-CR,CRT	1473572-1473602	31	NZ_CP025513	Neorhizobium sp. SOG26 plasmid unnamed2, complete sequence	643921-643951	8	0.742
NZ_CP039339_1	1.2\|1473572\|31\|NZ_CP039339\|PILER-CR,CRT	1473572-1473602	31	NZ_CP039913	Agrobacterium tumefaciens strain CFBP6625 plasmid pAtCFBP6625b, complete sequence	101237-101267	8	0.742
NZ_CP039339_1	1.2\|1473572\|31\|NZ_CP039339\|PILER-CR,CRT	1473572-1473602	31	NC_016652	Rhodococcus phage REQ2, complete genome	16680-16710	8	0.742
NZ_CP039339_1	1.5\|1473571\|32\|NZ_CP039339\|CRISPRCasFinder	1473571-1473602	32	NZ_CP035565	Lactobacillus paracasei strain SRCM103299 plasmid unnamed2	34755-34786	8	0.75
NZ_CP039339_1	1.5\|1473571\|32\|NZ_CP039339\|CRISPRCasFinder	1473571-1473602	32	NZ_AP018394	Lactobacillus paracasei strain IJH-SONE68 plasmid pLPS-2	1604-1635	8	0.75
NZ_CP039339_1	1.5\|1473571\|32\|NZ_CP039339\|CRISPRCasFinder	1473571-1473602	32	NZ_AP018394	Lactobacillus paracasei strain IJH-SONE68 plasmid pLPS-2	40194-40225	8	0.75
NZ_CP039339_1	1.5\|1473571\|32\|NZ_CP039339\|CRISPRCasFinder	1473571-1473602	32	NZ_CP039708	Lactobacillus paracasei strain Lp02 plasmid pLp02-1, complete sequence	19824-19855	8	0.75
NZ_CP039339_1	1.5\|1473571\|32\|NZ_CP039339\|CRISPRCasFinder	1473571-1473602	32	NZ_CP014987	Lactobacillus paracasei strain IIA plasmid unnamed2, complete sequence	29357-29388	8	0.75
NZ_CP039339_1	1.5\|1473571\|32\|NZ_CP039339\|CRISPRCasFinder	1473571-1473602	32	NZ_CP045074	Paracoccus kondratievae strain BJQ0001 plasmid unnamed1, complete sequence	89094-89125	8	0.75
NZ_CP039339_1	1.5\|1473571\|32\|NZ_CP039339\|CRISPRCasFinder	1473571-1473602	32	NZ_CP015530	Rhodococcus sp. WB1 plasmid pWB1, complete sequence	44139-44170	8	0.75
NZ_CP039339_1	1.5\|1473571\|32\|NZ_CP039339\|CRISPRCasFinder	1473571-1473602	32	NZ_CP011314	Klebsiella pneumoniae subsp. pneumoniae strain 234-12 plasmid pKpn23412-362, complete sequence	131438-131469	8	0.75
NZ_CP039339_1	1.5\|1473571\|32\|NZ_CP039339\|CRISPRCasFinder	1473571-1473602	32	NC_016652	Rhodococcus phage REQ2, complete genome	16680-16711	8	0.75
NZ_CP039339_1	1.2\|1473572\|31\|NZ_CP039339\|PILER-CR,CRT	1473572-1473602	31	MK496050	Pseudomonas sp. strain FFUP_PS_41 plasmid pJBCL41, complete sequence	429904-429934	9	0.71
NZ_CP039339_1	1.2\|1473572\|31\|NZ_CP039339\|PILER-CR,CRT	1473572-1473602	31	NZ_CP022567	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK03, complete sequence	214722-214752	9	0.71
NZ_CP039339_1	1.2\|1473572\|31\|NZ_CP039339\|PILER-CR,CRT	1473572-1473602	31	MN961670	Pseudomonas putida strain 420352 plasmid p420352-IMP, complete sequence	63717-63747	9	0.71
NZ_CP039339_1	1.5\|1473571\|32\|NZ_CP039339\|CRISPRCasFinder	1473571-1473602	32	NZ_CP039913	Agrobacterium tumefaciens strain CFBP6625 plasmid pAtCFBP6625b, complete sequence	101237-101268	9	0.719
NZ_CP039339_1	1.5\|1473571\|32\|NZ_CP039339\|CRISPRCasFinder	1473571-1473602	32	NZ_CP022567	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK03, complete sequence	214721-214752	9	0.719
NZ_CP039339_1	1.5\|1473571\|32\|NZ_CP039339\|CRISPRCasFinder	1473571-1473602	32	NZ_CP025513	Neorhizobium sp. SOG26 plasmid unnamed2, complete sequence	643920-643951	9	0.719
NZ_CP039339_1	1.5\|1473571\|32\|NZ_CP039339\|CRISPRCasFinder	1473571-1473602	32	MK496050	Pseudomonas sp. strain FFUP_PS_41 plasmid pJBCL41, complete sequence	429903-429934	10	0.688
NZ_CP039339_1	1.5\|1473571\|32\|NZ_CP039339\|CRISPRCasFinder	1473571-1473602	32	MN961670	Pseudomonas putida strain 420352 plasmid p420352-IMP, complete sequence	63717-63748	10	0.688

1. spacer 1.3|1473633|31|NZ_CP039339|PILER-CR,CRT matches to MN270270 (Streptococcus phage phi-SsuJS7_SSU0237, partial genome) position: , mismatch: 5, identity: 0.839

gatccagcgattctgcgattactggacgatc	CRISPR spacer
tttacagcgattctgcgattagtggacgatg	Protospacer
  * ***************** ********

2. spacer 1.3|1473633|31|NZ_CP039339|PILER-CR,CRT matches to MK448819 (Streptococcus phage Javan599, complete genome) position: , mismatch: 5, identity: 0.839

gatccagcgattctgcgattactggacgatc	CRISPR spacer
tttacagcgattctgcgattagtggacgatg	Protospacer
  * ***************** ********

3. spacer 1.2|1473572|31|NZ_CP039339|PILER-CR,CRT matches to NZ_CP049244 (Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.806

cacggcgttcttgatgttgccgaggaactgg	CRISPR spacer
caatgcgttcttgatgacgccgaggaacagt	Protospacer
**  ************ .********** *

4. spacer 1.2|1473572|31|NZ_CP039339|PILER-CR,CRT matches to NZ_CP020331 (Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence) position: , mismatch: 6, identity: 0.806

cacggcgttcttgatgttgccgaggaactgg	CRISPR spacer
cagcgcattcttgatgatgccgaggaacagc	Protospacer
**  **.********* *********** *

5. spacer 1.2|1473572|31|NZ_CP039339|PILER-CR,CRT matches to NZ_CP043499 (Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.806

cacggcgttcttgatgttgccgaggaactgg	CRISPR spacer
cagcgcgttcttgatgacgccgaggaagagg	Protospacer
**  ************ .*********  **

6. spacer 1.6|1473632|32|NZ_CP039339|CRISPRCasFinder matches to MN270270 (Streptococcus phage phi-SsuJS7_SSU0237, partial genome) position: , mismatch: 6, identity: 0.812

agatccagcgattctgcgattactggacgatc	CRISPR spacer
gtttacagcgattctgcgattagtggacgatg	Protospacer
.  * ***************** ********

7. spacer 1.6|1473632|32|NZ_CP039339|CRISPRCasFinder matches to MK448819 (Streptococcus phage Javan599, complete genome) position: , mismatch: 6, identity: 0.812

agatccagcgattctgcgattactggacgatc	CRISPR spacer
gtttacagcgattctgcgattagtggacgatg	Protospacer
.  * ***************** ********

8. spacer 1.2|1473572|31|NZ_CP039339|PILER-CR,CRT matches to NZ_CP045074 (Paracoccus kondratievae strain BJQ0001 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.774

cacggcgttcttgatgttgccgaggaactgg	CRISPR spacer
cagcgcgttcttgatgatgcccaggaaaagc	Protospacer
**  ************ **** *****  *

9. spacer 1.2|1473572|31|NZ_CP039339|PILER-CR,CRT matches to NZ_CP011314 (Klebsiella pneumoniae subsp. pneumoniae strain 234-12 plasmid pKpn23412-362, complete sequence) position: , mismatch: 7, identity: 0.774

cacggcgttcttgatgttgccgaggaactgg	CRISPR spacer
gaccgtattgttgatgttgccgaggagctgt	Protospacer
 ** *..** ****************.***

10. spacer 1.5|1473571|32|NZ_CP039339|CRISPRCasFinder matches to NZ_CP049244 (Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.781

ccacggcgttcttgatgttgccgaggaactgg	CRISPR spacer
gcaatgcgttcttgatgacgccgaggaacagt	Protospacer
 **  ************ .********** *

11. spacer 1.5|1473571|32|NZ_CP039339|CRISPRCasFinder matches to NZ_CP020331 (Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence) position: , mismatch: 7, identity: 0.781

ccacggcgttcttgatgttgccgaggaactgg	CRISPR spacer
gcagcgcattcttgatgatgccgaggaacagc	Protospacer
 **  **.********* *********** *

12. spacer 1.5|1473571|32|NZ_CP039339|CRISPRCasFinder matches to NZ_CP043499 (Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccacggcgttcttgatgttgccgaggaactgg	CRISPR spacer
gcagcgcgttcttgatgacgccgaggaagagg	Protospacer
 **  ************ .*********  **

13. spacer 1.2|1473572|31|NZ_CP039339|PILER-CR,CRT matches to NZ_CP039708 (Lactobacillus paracasei strain Lp02 plasmid pLp02-1, complete sequence) position: , mismatch: 8, identity: 0.742

cacggcgttcttgatgttgccgaggaactgg	CRISPR spacer
attgaagttgttgatgttgccgatgaactgc	Protospacer
  .*. *** ************* ******

14. spacer 1.2|1473572|31|NZ_CP039339|PILER-CR,CRT matches to NZ_CP014987 (Lactobacillus paracasei strain IIA plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.742

cacggcgttcttgatgttgccgaggaactgg	CRISPR spacer
attgaagttgttgatgttgccgatgaactgc	Protospacer
  .*. *** ************* ******

15. spacer 1.2|1473572|31|NZ_CP039339|PILER-CR,CRT matches to NZ_CP035565 (Lactobacillus paracasei strain SRCM103299 plasmid unnamed2) position: , mismatch: 8, identity: 0.742

cacggcgttcttgatgttgccgaggaactgg	CRISPR spacer
attgaagttgttgatgttgccgatgaactgc	Protospacer
  .*. *** ************* ******

16. spacer 1.2|1473572|31|NZ_CP039339|PILER-CR,CRT matches to NZ_AP018394 (Lactobacillus paracasei strain IJH-SONE68 plasmid pLPS-2) position: , mismatch: 8, identity: 0.742

cacggcgttcttgatgttgccgaggaactgg	CRISPR spacer
attgaagttgttgatgttgccgatgaactgc	Protospacer
  .*. *** ************* ******

17. spacer 1.2|1473572|31|NZ_CP039339|PILER-CR,CRT matches to NZ_AP018394 (Lactobacillus paracasei strain IJH-SONE68 plasmid pLPS-2) position: , mismatch: 8, identity: 0.742

cacggcgttcttgatgttgccgaggaactgg	CRISPR spacer
attgaagttgttgatgttgccgatgaactgc	Protospacer
  .*. *** ************* ******

18. spacer 1.2|1473572|31|NZ_CP039339|PILER-CR,CRT matches to NZ_CP025513 (Neorhizobium sp. SOG26 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.742

cacggcgttcttgatgttgccgaggaactgg	CRISPR spacer
gagcgcgttcttgatgataccgaggaaaaga	Protospacer
 *  ************ *.********  *.

19. spacer 1.2|1473572|31|NZ_CP039339|PILER-CR,CRT matches to NZ_CP039913 (Agrobacterium tumefaciens strain CFBP6625 plasmid pAtCFBP6625b, complete sequence) position: , mismatch: 8, identity: 0.742

cacggcgttcttgatgttgccgaggaactgg	CRISPR spacer
cacggcgttcttgaggctgccgataagttcc	Protospacer
************** *.****** .*..*

20. spacer 1.2|1473572|31|NZ_CP039339|PILER-CR,CRT matches to NC_016652 (Rhodococcus phage REQ2, complete genome) position: , mismatch: 8, identity: 0.742

cacggcgttcttgatgttgccgaggaactgg	CRISPR spacer
ctgcccgttcttgatgttgccgtcgaacggt	Protospacer
*    *****************  **** *

21. spacer 1.5|1473571|32|NZ_CP039339|CRISPRCasFinder matches to NZ_CP035565 (Lactobacillus paracasei strain SRCM103299 plasmid unnamed2) position: , mismatch: 8, identity: 0.75

ccacggcgttcttgatgttgccgaggaactgg	CRISPR spacer
cattgaagttgttgatgttgccgatgaactgc	Protospacer
*  .*. *** ************* ******

22. spacer 1.5|1473571|32|NZ_CP039339|CRISPRCasFinder matches to NZ_AP018394 (Lactobacillus paracasei strain IJH-SONE68 plasmid pLPS-2) position: , mismatch: 8, identity: 0.75

ccacggcgttcttgatgttgccgaggaactgg	CRISPR spacer
cattgaagttgttgatgttgccgatgaactgc	Protospacer
*  .*. *** ************* ******

23. spacer 1.5|1473571|32|NZ_CP039339|CRISPRCasFinder matches to NZ_AP018394 (Lactobacillus paracasei strain IJH-SONE68 plasmid pLPS-2) position: , mismatch: 8, identity: 0.75

ccacggcgttcttgatgttgccgaggaactgg	CRISPR spacer
cattgaagttgttgatgttgccgatgaactgc	Protospacer
*  .*. *** ************* ******

24. spacer 1.5|1473571|32|NZ_CP039339|CRISPRCasFinder matches to NZ_CP039708 (Lactobacillus paracasei strain Lp02 plasmid pLp02-1, complete sequence) position: , mismatch: 8, identity: 0.75

ccacggcgttcttgatgttgccgaggaactgg	CRISPR spacer
cattgaagttgttgatgttgccgatgaactgc	Protospacer
*  .*. *** ************* ******

25. spacer 1.5|1473571|32|NZ_CP039339|CRISPRCasFinder matches to NZ_CP014987 (Lactobacillus paracasei strain IIA plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

ccacggcgttcttgatgttgccgaggaactgg	CRISPR spacer
cattgaagttgttgatgttgccgatgaactgc	Protospacer
*  .*. *** ************* ******

26. spacer 1.5|1473571|32|NZ_CP039339|CRISPRCasFinder matches to NZ_CP045074 (Paracoccus kondratievae strain BJQ0001 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

ccacggcgttcttgatgttgccgaggaactgg	CRISPR spacer
gcagcgcgttcttgatgatgcccaggaaaagc	Protospacer
 **  ************ **** *****  *

27. spacer 1.5|1473571|32|NZ_CP039339|CRISPRCasFinder matches to NZ_CP015530 (Rhodococcus sp. WB1 plasmid pWB1, complete sequence) position: , mismatch: 8, identity: 0.75

ccacggcgttcttgatgttgccgaggaactgg	CRISPR spacer
ccacgatgttcttgatgttgccgccggccagc	Protospacer
*****..****************  *. * *

28. spacer 1.5|1473571|32|NZ_CP039339|CRISPRCasFinder matches to NZ_CP011314 (Klebsiella pneumoniae subsp. pneumoniae strain 234-12 plasmid pKpn23412-362, complete sequence) position: , mismatch: 8, identity: 0.75

ccacggcgttcttgatgttgccgaggaactgg	CRISPR spacer
tgaccgtattgttgatgttgccgaggagctgt	Protospacer
. ** *..** ****************.***

29. spacer 1.5|1473571|32|NZ_CP039339|CRISPRCasFinder matches to NC_016652 (Rhodococcus phage REQ2, complete genome) position: , mismatch: 8, identity: 0.75

ccacggcgttcttgatgttgccgaggaactgg	CRISPR spacer
cctgcccgttcttgatgttgccgtcgaacggt	Protospacer
**    *****************  **** *

30. spacer 1.2|1473572|31|NZ_CP039339|PILER-CR,CRT matches to MK496050 (Pseudomonas sp. strain FFUP_PS_41 plasmid pJBCL41, complete sequence) position: , mismatch: 9, identity: 0.71

cacggcgttcttgatgttgccgaggaactgg	CRISPR spacer
gcttaccttgttgatgttggcgaggaactga	Protospacer
  . .* ** ********* **********.

31. spacer 1.2|1473572|31|NZ_CP039339|PILER-CR,CRT matches to NZ_CP022567 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK03, complete sequence) position: , mismatch: 9, identity: 0.71

cacggcgttcttgatgttgccgaggaactgg	CRISPR spacer
ggcggcgttctggatggtgccgaggttgcgc	Protospacer
 .********* **** ********   .*

32. spacer 1.2|1473572|31|NZ_CP039339|PILER-CR,CRT matches to MN961670 (Pseudomonas putida strain 420352 plasmid p420352-IMP, complete sequence) position: , mismatch: 9, identity: 0.71

cacggcgttcttgatgttgccgaggaactgg	CRISPR spacer
gcttaccttgttgatgttggcgaggaactga	Protospacer
  . .* ** ********* **********.

33. spacer 1.5|1473571|32|NZ_CP039339|CRISPRCasFinder matches to NZ_CP039913 (Agrobacterium tumefaciens strain CFBP6625 plasmid pAtCFBP6625b, complete sequence) position: , mismatch: 9, identity: 0.719

ccacggcgttcttgatgttgccgaggaactgg	CRISPR spacer
tcacggcgttcttgaggctgccgataagttcc	Protospacer
.************** *.****** .*..*

34. spacer 1.5|1473571|32|NZ_CP039339|CRISPRCasFinder matches to NZ_CP022567 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK03, complete sequence) position: , mismatch: 9, identity: 0.719

ccacggcgttcttgatgttgccgaggaactgg	CRISPR spacer
cggcggcgttctggatggtgccgaggttgcgc	Protospacer
* .********* **** ********   .*

35. spacer 1.5|1473571|32|NZ_CP039339|CRISPRCasFinder matches to NZ_CP025513 (Neorhizobium sp. SOG26 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

ccacggcgttcttgatgttgccgaggaactgg	CRISPR spacer
ggagcgcgttcttgatgataccgaggaaaaga	Protospacer
  *  ************ *.********  *.

36. spacer 1.5|1473571|32|NZ_CP039339|CRISPRCasFinder matches to MK496050 (Pseudomonas sp. strain FFUP_PS_41 plasmid pJBCL41, complete sequence) position: , mismatch: 10, identity: 0.688

ccacggcgttcttgatgttgccgaggaactgg	CRISPR spacer
ggcttaccttgttgatgttggcgaggaactga	Protospacer
   . .* ** ********* **********.

37. spacer 1.5|1473571|32|NZ_CP039339|CRISPRCasFinder matches to MN961670 (Pseudomonas putida strain 420352 plasmid p420352-IMP, complete sequence) position: , mismatch: 10, identity: 0.688

ccacggcgttcttgatgttgccgaggaactgg	CRISPR spacer
ggcttaccttgttgatgttggcgaggaactga	Protospacer
   . .* ** ********* **********.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

135212 : 143452

uncultured_Caudovirales_phage(16.67%)

integrase

attL 129962:130010|attR 136743:136791

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
129962:130010	attL	NA	NA	NA	NA
WP_020749438.1\|135212_136583_-\|integrase	integrase family protein	A0A2H4JCB7	uncultured_Caudovirales_phage	6.1e-06	25.5
WP_138928197.1\|136976_137333_-	hypothetical protein	A0A0M4TUV6	Ralstonia_phage	6.7e-42	84.8
136743:136791	attR	NA	NA	NA	NA
WP_064050048.1\|137888_138293_+	chemotaxis protein CheY	Q56AR1	Bacillus_thuringiensis_phage	1.2e-05	29.8
WP_064050047.1\|138292_138955_+	protein phosphatase CheZ	NA	NA	NA	NA
WP_138928198.1\|139123_140242_+	3-deoxy-7-phosphoheptulonate synthase	A0A0B6VT43	Edwardsiella_phage	4.2e-82	48.9
WP_138929664.1\|140414_141242_-	DNA/RNA non-specific endonuclease	H6X497	Enterobacteria_phage	3.3e-23	32.5
WP_064050045.1\|141329_141815_+	nucleoside 2-deoxyribosyltransferase	NA	NA	NA	NA
WP_064050075.1\|142081_142987_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA
WP_064050044.1\|142990_143452_-	NUDIX hydrolase	A0A0B4ZZH8	Yersinia_phage	9.7e-17	37.1

DBSCAN-SWA_2

231759 : 251643

Acidithiobacillus_phage(38.89%)

portal,capsid,terminase,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138928244.1\|231759_232632_+	AAA family ATPase	K4HZX9	Acidithiobacillus_phage	1.4e-101	66.1
WP_138928245.1\|232649_233282_+	hypothetical protein	K4ICM8	Acidithiobacillus_phage	1.3e-64	59.2
WP_138929671.1\|233354_233759_+	hypothetical protein	K4I3X7	Acidithiobacillus_phage	8.8e-30	50.7
WP_138928246.1\|233764_234154_+	hypothetical protein	NA	NA	NA	NA
WP_138928247.1\|234137_236435_+	hypothetical protein	K4HZY1	Acidithiobacillus_phage	0.0e+00	68.3
WP_138928248.1\|236665_236878_+	hypothetical protein	NA	NA	NA	NA
WP_138928249.1\|236867_237275_+	hypothetical protein	NA	NA	NA	NA
WP_138928250.1\|237320_237566_-	hypothetical protein	NA	NA	NA	NA
WP_138928251.1\|237666_239070_+	ParB N-terminal domain-containing protein	K4I3Y2	Acidithiobacillus_phage	5.4e-167	63.0
WP_138928252.1\|239066_240335_+	ParB N-terminal domain-containing protein	A0A2H4JGF1	uncultured_Caudovirales_phage	4.5e-197	80.3
WP_138928253.1\|240339_240996_-	type III secretion system effector protein	NA	NA	NA	NA
WP_138928254.1\|241252_241441_-	hypothetical protein	K4HZY7	Acidithiobacillus_phage	7.7e-13	61.4
WP_138928255.1\|241539_242034_-	DUF3489 domain-containing protein	A0A2H4JE21	uncultured_Caudovirales_phage	5.3e-21	65.4
WP_138928256.1\|242130_242667_+	elements of external origin	A0A2H4JCL4	uncultured_Caudovirales_phage	4.2e-72	79.8
WP_138929672.1\|242669_244634_+\|terminase	phage terminase large subunit family protein	A0A2H4JIC6	uncultured_Caudovirales_phage	0.0e+00	86.6
WP_138928257.1\|244677_245187_+	hypothetical protein	A0A0F6WCR7	Sinorhizobium_phage	6.7e-27	46.2
WP_138928258.1\|245197_245590_+	hypothetical protein	NA	NA	NA	NA
WP_138928259.1\|245589_245811_+	hypothetical protein	A0A2H4JCJ9	uncultured_Caudovirales_phage	2.6e-12	58.9
WP_138928260.1\|245810_247316_+\|portal	phage portal protein	A0A1B2LRR5	Wolbachia_phage	1.3e-150	56.4
WP_138928261.1\|247325_248585_+	S49 family peptidase	K4HZZ6	Acidithiobacillus_phage	7.1e-62	43.0
WP_138928262.1\|248594_248972_+\|head	head decoration protein	A0A1B2LRT0	Wolbachia_phage	3.0e-24	50.4
WP_138928263.1\|248978_249983_+\|capsid	major capsid protein	A0A1B2LRS0	Wolbachia_phage	2.0e-107	64.6
WP_138928264.1\|249985_250288_+	hypothetical protein	NA	NA	NA	NA
WP_138928265.1\|250303_250750_+	hypothetical protein	A0A2I5ARB4	Synechococcus_phage	1.3e-05	30.6
WP_138928266.1\|250872_251643_+	hypothetical protein	A0A2D2W2E0	Stenotrophomonas_phage	9.4e-49	44.5

DBSCAN-SWA_3

333907 : 340739

Stx2-converting_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138928326.1\|333907_335452_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.7e-137	49.0
WP_074295443.1\|335503_335851_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.0e-35	63.6
WP_138928327.1\|335847_336282_-\|transposase	transposase	A0A0P0ZCV4	Stx2-converting_phage	1.2e-05	41.7
WP_138929680.1\|336352_336820_+\|transposase	transposase	NA	NA	NA	NA
WP_138928328.1\|336795_337146_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	5.6e-17	39.4
WP_138929681.1\|337177_338752_+\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	1.0e-65	33.9
WP_138928329.1\|339263_339518_+	hypothetical protein	NA	NA	NA	NA
WP_138928330.1\|339704_340739_-\|transposase	IS630 family transposase	S5VXX4	Leptospira_phage	2.6e-49	33.7

DBSCAN-SWA_4

373611 : 381849

Bacillus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138928344.1\|373611_374985_+	nucleotide sugar dehydrogenase	A0A127AXI2	Bacillus_phage	1.1e-76	39.1
WP_064049507.1\|375011_375959_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	A0A2H4N7X4	Lake_Baikal_phage	5.3e-17	27.6
WP_138928345.1\|375955_376951_+	ADP-glyceromanno-heptose 6-epimerase	R9S880	Prochlorococcus_phage	4.1e-28	32.3
WP_138928346.1\|377080_377398_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA
WP_064049510.1\|377501_378404_+	cysteine synthase CysM	A0A1X9I5K7	Streptococcus_phage	1.1e-51	40.2
WP_064049512.1\|378484_379597_-	lytic murein transglycosylase B	NA	NA	NA	NA
WP_064049513.1\|379716_380640_+	histone deacetylase family protein	A0A2K9KZC4	Tupanvirus	4.2e-43	36.2
WP_064049514.1\|380796_381849_+	methionine ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.9e-34	39.9

DBSCAN-SWA_5

1268221 : 1278360

Hokovirus(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064048632.1\|1268221_1270180_+	molecular chaperone DnaK	A0A1V0SH73	Hokovirus	6.0e-148	50.8
WP_138928715.1\|1270314_1271460_+	molecular chaperone DnaJ	A0A1V0SBY2	Catovirus	4.3e-21	29.3
WP_138928716.1\|1271495_1273376_+	aminodeoxychorismate synthase component I	A0A0B5J984	Pandoravirus	2.0e-55	36.9
WP_138928717.1\|1273331_1274018_-	ATP-binding cassette domain-containing protein	F2Y2R6	Organic_Lake_phycodnavirus	3.9e-14	27.2
WP_138928718.1\|1274025_1274733_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_064048637.1\|1274744_1275569_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	4.1e-34	31.7
WP_064048638.1\|1275625_1276270_-	deoxynucleoside kinase	M1IA15	Paramecium_bursaria_Chlorella_virus	1.4e-05	27.1
WP_003271964.1\|1276303_1276813_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_138928719.1\|1276812_1278360_-	polynucleotide adenylyltransferase PcnB	H7BUW3	unidentified_phage	3.6e-23	33.6

DBSCAN-SWA_6

1501232 : 1520483

Ralstonia_phage(70.59%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064048824.1\|1501232_1503578_+	DNA translocase FtsK	G1FGP1	Mycobacterium_phage	4.3e-84	50.5
WP_138928803.1\|1503666_1504314_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_064048826.1\|1504349_1504766_+	hypothetical protein	NA	NA	NA	NA
WP_138929712.1\|1504875_1506186_+	AAA family ATPase	G3MBE0	Bacillus_virus	4.2e-73	37.2
WP_064048828.1\|1506252_1507569_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.3e-95	43.5
WP_138928804.1\|1507792_1508383_+	recombinase family protein	W6CWV1	Ralstonia_phage	1.5e-94	91.3
WP_138928805.1\|1508406_1508685_+	hypothetical protein	A0A1W5LUF4	Ralstonia_phage	8.2e-11	64.1
WP_138928806.1\|1508681_1509701_-	hypothetical protein	Q6UAY9	Ralstonia_phage	1.4e-153	77.5
WP_138928807.1\|1510162_1511530_-	zonular occludens toxin	A0A097ZIG6	Ralstonia_phage	3.1e-196	79.3
WP_138928808.1\|1511534_1511864_-	DUF2523 domain-containing protein	A0A097ZIJ0	Ralstonia_phage	4.6e-45	84.4
WP_138928809.1\|1511875_1513471_-	hypothetical protein	B5UAS0	Ralstonia_phage	4.8e-79	53.8
WP_138928810.1\|1513542_1513758_-	hypothetical protein	A0A1W5LU14	Ralstonia_phage	4.1e-18	79.2
WP_138928811.1\|1513760_1514009_-	hypothetical protein	A0A1W5LU65	Ralstonia_phage	9.1e-38	97.5
WP_138928812.1\|1514239_1514449_-	hypothetical protein	NA	NA	NA	NA
WP_138928813.1\|1514448_1514775_-	hypothetical protein	Q6UAZ7	Ralstonia_phage	5.1e-12	45.3
WP_138928814.1\|1514826_1515183_-	hypothetical protein	Q6UAZ8	Ralstonia_phage	1.5e-49	85.0
WP_138928815.1\|1515323_1515614_+	helix-turn-helix domain-containing protein	A0A097ZIG4	Ralstonia_phage	1.4e-21	63.2
WP_138929713.1\|1516107_1517457_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	8.5e-29	29.6
WP_138928816.1\|1517557_1518592_+\|transposase	IS481 family transposase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	5.2e-127	64.3
WP_064048877.1\|1519589_1519865_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_064048878.1\|1519864_1520134_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_081261885.1\|1520180_1520483_-	hypothetical protein	Q6UAY9	Ralstonia_phage	3.4e-26	60.4

DBSCAN-SWA_7

2647419 : 2684749

Ralstonia_virus(50.0%)

integrase,terminase,tail,capsid,portal,plate,head,holin

attL 2647321:2647366|attR 2685295:2685340

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2647321:2647366	attL	NA	NA	NA	NA
WP_138929207.1\|2647419_2648508_-\|integrase	tyrosine-type recombinase/integrase	A4PE72	Ralstonia_virus	3.8e-152	75.0
WP_138929754.1\|2648719_2649439_-	hypothetical protein	A4PE71	Ralstonia_virus	3.8e-92	75.5
WP_138929208.1\|2649535_2652334_-	hypothetical protein	A4PE69	Ralstonia_virus	0.0e+00	94.1
WP_138929209.1\|2652496_2652805_-	hypothetical protein	NA	NA	NA	NA
WP_138929210.1\|2652824_2653037_-	hypothetical protein	A4PE66	Ralstonia_virus	2.1e-30	95.7
WP_064049162.1\|2653029_2653266_-	hypothetical protein	A4PE65	Ralstonia_virus	3.6e-36	96.2
WP_138929211.1\|2653265_2653472_-	hypothetical protein	A4PE64	Ralstonia_virus	6.4e-21	83.8
WP_138929212.1\|2653629_2653857_-	hypothetical protein	A0A077K8S8	Ralstonia_phage	7.6e-15	57.0
WP_138929213.1\|2653867_2654422_-	Bro-N domain-containing protein	A4PE61	Ralstonia_virus	6.3e-79	80.4
WP_138929214.1\|2654538_2654787_-	transcriptional regulator	A4PE60	Ralstonia_virus	6.8e-41	97.6
WP_138929215.1\|2654783_2654978_-	hypothetical protein	A4PE59	Ralstonia_virus	4.1e-25	98.4
WP_021155113.1\|2655006_2655198_-	hypothetical protein	E5E3U0	Burkholderia_phage	3.4e-08	50.9
WP_138929216.1\|2655216_2655417_-	hypothetical protein	NA	NA	NA	NA
WP_138929217.1\|2655489_2655915_+	helix-turn-helix domain-containing protein	A0A077K9Z1	Ralstonia_phage	2.2e-47	71.5
WP_138929218.1\|2656074_2656833_+	hypothetical protein	A4PE55	Ralstonia_virus	4.1e-105	81.7
WP_138929219.1\|2656748_2657531_-	site-specific DNA-methyltransferase	A0A1S5NPU0	Burkholderia_phage	1.5e-89	66.8
WP_138929220.1\|2657481_2657691_-	Com family DNA-binding transcriptional regulator	A0A1S5NPS9	Burkholderia_phage	5.4e-15	70.4
WP_138929221.1\|2657800_2658928_-	phage late control D family protein	A4PE54	Ralstonia_virus	2.3e-197	93.6
WP_138929222.1\|2658924_2659347_-\|tail	phage tail protein	A0A077K9Y7	Ralstonia_phage	2.5e-72	96.4
WP_011001852.1\|2662258_2662360_-\|tail	GpE family phage tail protein	A0A077K821	Ralstonia_phage	2.1e-09	97.0
WP_138929223.1\|2662356_2662683_-\|tail	phage tail assembly protein	A4PE51	Ralstonia_virus	4.4e-48	95.4
WP_138929224.1\|2662758_2663268_-\|tail	phage major tail tube protein	A0A077KER7	Ralstonia_phage	8.1e-81	84.6
WP_138929225.1\|2663299_2664475_-\|tail	phage tail sheath protein	A0A077K9Y4	Ralstonia_phage	1.2e-215	95.4
WP_138929226.1\|2664573_2665038_-	hypothetical protein	A0A077K8R9	Ralstonia_phage	1.8e-82	95.5
WP_138929227.1\|2665034_2665787_-\|tail	phage tail protein	A0A077K9S5	Ralstonia_phage	1.7e-114	85.6
WP_138929228.1\|2665796_2667464_-\|tail	phage tail protein	A4PE45	Ralstonia_virus	1.1e-262	80.7
WP_138929229.1\|2667470_2668088_-\|tail	phage tail protein I	A0A077KER5	Ralstonia_phage	1.4e-98	94.6
WP_138929230.1\|2668080_2668989_-\|plate	baseplate assembly protein	A0A077K9X9	Ralstonia_phage	1.6e-143	90.4
WP_138929231.1\|2668991_2669339_-\|plate	baseplate assembly protein	A4PE42	Ralstonia_virus	1.1e-49	85.2
WP_138929232.1\|2669335_2669953_-\|plate	phage baseplate assembly protein V	A0A077K9S0	Ralstonia_phage	6.1e-107	92.2
WP_138929233.1\|2670212_2670446_+	protein L	NA	NA	NA	NA
WP_138929234.1\|2670461_2670737_+	hypothetical protein	NA	NA	NA	NA
WP_138929235.1\|2670879_2671332_-	phage virion morphogenesis protein	A0A077K9X5	Ralstonia_phage	8.2e-61	86.7
WP_138929236.1\|2671328_2671763_-\|tail	phage tail protein	A0A077K8R3	Ralstonia_phage	2.3e-76	94.4
WP_138929237.1\|2671759_2672260_-	hypothetical protein	A4PE37	Ralstonia_virus	8.8e-72	86.7
WP_138929238.1\|2672256_2673063_-	DUF3380 domain-containing protein	A4PE36	Ralstonia_virus	3.3e-113	77.2
WP_138929239.1\|2673059_2673374_-\|holin	phage holin family protein	A4PE35	Ralstonia_virus	4.7e-47	93.2
WP_064049132.1\|2673370_2673775_-	hypothetical protein	A0A077K9X1	Ralstonia_phage	4.5e-26	95.8
WP_064049131.1\|2673790_2673997_-\|tail	phage tail protein	A0A077K8R0	Ralstonia_phage	7.6e-30	95.6
WP_138929240.1\|2673996_2674476_-\|head	head completion/stabilization protein	A4PE32	Ralstonia_virus	3.1e-82	96.9
WP_138929241.1\|2674573_2675296_-\|terminase	terminase	A0A077K804	Ralstonia_phage	9.0e-126	98.8
WP_138929242.1\|2675292_2676309_-\|capsid	phage major capsid protein, P2 family	A0A077KEQ8	Ralstonia_phage	2.0e-187	99.4
WP_138929243.1\|2676362_2677208_-\|capsid	GPO family capsid scaffolding protein	A0A077K9W8	Ralstonia_phage	8.8e-149	97.2
WP_138929244.1\|2677351_2679133_+\|terminase	terminase ATPase subunit family protein	A0A077K8Q7	Ralstonia_phage	0.0e+00	95.6
WP_138929245.1\|2679129_2680236_+\|portal	phage portal protein	A4PE27	Ralstonia_virus	9.6e-204	94.3
WP_138929246.1\|2680220_2681036_-	hypothetical protein	A4PE26	Ralstonia_virus	1.7e-144	91.9
WP_138929247.1\|2680945_2681554_-	hypothetical protein	A4PE25	Ralstonia_virus	1.6e-75	77.7
WP_138929248.1\|2681553_2681901_-	hypothetical protein	NA	NA	NA	NA
WP_138929249.1\|2681887_2682394_-	DUF4123 domain-containing protein	A4PE24	Ralstonia_virus	1.0e-88	97.0
WP_138929250.1\|2682395_2682806_-	PAAR domain-containing protein	A4PE23	Ralstonia_virus	1.3e-65	97.7
WP_138929251.1\|2683324_2684749_-	dNTP triphosphohydrolase	A0A1B1ISR1	uncultured_Mediterranean_phage	5.3e-05	32.6
2685295:2685340	attR	NA	NA	NA	NA

DBSCAN-SWA_8

2821120 : 2853621

Acidithiobacillus_phage(63.33%)

capsid,terminase,head,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138929308.1\|2821120_2821891_-	hypothetical protein	A0A2D2W2E0	Stenotrophomonas_phage	4.0e-47	43.8
WP_138929309.1\|2822014_2822461_-	hypothetical protein	NA	NA	NA	NA
WP_138929761.1\|2822476_2822779_-	hypothetical protein	NA	NA	NA	NA
WP_138929310.1\|2822781_2823786_-\|capsid	major capsid protein	A0A1B2LRS0	Wolbachia_phage	2.6e-107	64.6
WP_138929311.1\|2823792_2824170_-\|head	head decoration protein	A0A1B2LRT0	Wolbachia_phage	7.9e-25	52.0
WP_138929312.1\|2824179_2825430_-	S49 family peptidase	K4HZZ6	Acidithiobacillus_phage	1.0e-60	42.6
WP_138929313.1\|2825439_2826987_-\|portal	phage portal protein	A0A1B2LRR5	Wolbachia_phage	4.3e-149	56.2
WP_064051977.1\|2826986_2827208_-	hypothetical protein	A0A2H4JCJ9	uncultured_Caudovirales_phage	2.0e-12	58.9
WP_138928258.1\|2827207_2827600_-	hypothetical protein	NA	NA	NA	NA
WP_138928257.1\|2827610_2828120_-	hypothetical protein	A0A0F6WCR7	Sinorhizobium_phage	6.7e-27	46.2
WP_138929762.1\|2828163_2830128_-\|terminase	phage terminase large subunit family protein	A0A2H4JIC6	uncultured_Caudovirales_phage	0.0e+00	86.7
WP_138929314.1\|2830130_2830667_-	elements of external origin	A0A2H4JCL4	uncultured_Caudovirales_phage	1.5e-72	80.9
WP_138929315.1\|2830763_2831264_+	DUF3489 domain-containing protein	A0A2H4JE21	uncultured_Caudovirales_phage	4.1e-21	67.9
WP_138929316.1\|2831184_2831907_-	DUF1016 family protein	NA	NA	NA	NA
WP_020749326.1\|2832022_2832211_+	hypothetical protein	K4HZY7	Acidithiobacillus_phage	5.9e-13	61.4
WP_138929763.1\|2832359_2832599_+	hypothetical protein	NA	NA	NA	NA
WP_138929317.1\|2832558_2833794_-	ParB N-terminal domain-containing protein	A0A2H4JGF1	uncultured_Caudovirales_phage	6.8e-190	79.8
WP_138929318.1\|2833790_2835194_-	ParB N-terminal domain-containing protein	K4I3Y2	Acidithiobacillus_phage	9.5e-164	63.4
WP_138929319.1\|2835575_2835791_-	hypothetical protein	NA	NA	NA	NA
WP_138929320.1\|2836043_2836310_-	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA
WP_138928303.1\|2836364_2836769_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_138929321.1\|2836740_2836950_-	hypothetical protein	NA	NA	NA	NA
WP_138929322.1\|2836951_2837416_-	crossover junction endodeoxyribonuclease RuvC	K4ICN3	Acidithiobacillus_phage	4.5e-54	68.9
WP_138929323.1\|2837536_2839825_-	hypothetical protein	K4HZY1	Acidithiobacillus_phage	7.9e-293	64.3
WP_138929324.1\|2839821_2840082_-	helix-turn-helix domain-containing protein	K4I1D6	Acidithiobacillus_phage	5.5e-17	62.5
WP_138929325.1\|2840078_2840816_-	hypothetical protein	K4HZA0	Acidithiobacillus_phage	2.9e-111	77.8
WP_138929326.1\|2840815_2841292_-	hypothetical protein	K4I3X7	Acidithiobacillus_phage	6.7e-53	65.6
WP_064051917.1\|2841299_2841947_-	hypothetical protein	K4ICM8	Acidithiobacillus_phage	1.3e-80	70.9
WP_138929327.1\|2841943_2842816_-	AAA family ATPase	K4HZX9	Acidithiobacillus_phage	1.1e-106	69.8
WP_064051951.1\|2842812_2843295_-	hypothetical protein	K4HZ96	Acidithiobacillus_phage	3.5e-41	56.1
WP_064051950.1\|2843305_2843569_-	hypothetical protein	K4I3X3	Acidithiobacillus_phage	1.3e-18	59.3
WP_064051921.1\|2843797_2844238_+	helix-turn-helix domain-containing protein	K4ICM4	Acidithiobacillus_phage	5.1e-39	57.5
WP_138929328.1\|2844289_2846521_+	hypothetical protein	K4I1D0	Acidithiobacillus_phage	6.5e-292	67.0
WP_138929329.1\|2846679_2847840_+	hypothetical protein	NA	NA	NA	NA
WP_138929330.1\|2848081_2848300_+	hypothetical protein	K4HZ94	Acidithiobacillus_phage	2.9e-11	60.3
WP_138929331.1\|2848299_2848749_+	DUF2924 domain-containing protein	K4I3X1	Acidithiobacillus_phage	7.4e-54	70.3
WP_138929332.1\|2848745_2850134_+	recombinase family protein	K4ICM1	Acidithiobacillus_phage	1.3e-221	83.4
WP_138929333.1\|2850130_2850505_+	site-specific recombinase resolvase	K4HZX2	Acidithiobacillus_phage	6.0e-41	67.2
WP_138929334.1\|2850501_2850972_+	hypothetical protein	K4I1C7	Acidithiobacillus_phage	5.1e-37	52.2
WP_138929764.1\|2851397_2851622_+	hypothetical protein	NA	NA	NA	NA
WP_138929335.1\|2852184_2852469_+	hypothetical protein	NA	NA	NA	NA
WP_138929336.1\|2852628_2853621_-	hypothetical protein	A9YX09	Burkholderia_phage	7.3e-86	50.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP039340

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 7170

Leptospira_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138929776.1\|3582_4194_-	helix-turn-helix domain-containing protein	S5VXX4	Leptospira_phage	1.7e-08	35.7
WP_138929777.1\|4244_5483_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	2.8e-26	33.5
WP_138929778.1\|6213_7170_-\|transposase	IS5 family transposase	A0A1V0E8E1	Vibrio_phage	1.6e-61	44.9

DBSCAN-SWA_2

12227 : 91136

Paenibacillus_phage(62.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138930465.1\|12227_19139_-	GNAT family N-acetyltransferase	D0R7J2	Paenibacillus_phage	1.2e-28	34.7
WP_138929781.1\|19419_27246_-	SDR family NAD(P)-dependent oxidoreductase	D0R7J2	Paenibacillus_phage	6.1e-34	35.6
WP_138929782.1\|27398_40043_-	SDR family NAD(P)-dependent oxidoreductase	D0R7J2	Paenibacillus_phage	2.8e-28	29.1
WP_138930466.1\|40109_41555_-	cytochrome P450	S4VQU1	Pandoravirus	2.8e-17	30.1
WP_138929783.1\|41586_53952_-	SDR family NAD(P)-dependent oxidoreductase	D0R7J2	Paenibacillus_phage	3.4e-31	32.4
WP_138929784.1\|54129_54996_-	methyltransferase domain-containing protein	A0A1X9I6N4	Streptococcus_phage	2.2e-06	29.3
WP_138929785.1\|55104_70797_-	SDR family NAD(P)-dependent oxidoreductase	D0R7J2	Paenibacillus_phage	9.0e-37	30.1
WP_138929786.1\|70790_91136_-	amino acid adenylation domain-containing protein	A0A2K9KZV5	Tupanvirus	2.0e-76	31.7

DBSCAN-SWA_3

96627 : 99567

Mycobacterium_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138929789.1\|96627_99567_-	cell division protein FtsK	S5VNE3	Mycobacterium_phage	7.0e-84	47.6

DBSCAN-SWA_4

148865 : 154896

Tupanvirus(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_081262125.1\|148865_150575_+	acyl--CoA ligase	A0A2K9KZV5	Tupanvirus	1.7e-29	23.5
WP_064051882.1\|150599_151532_+	hypothetical protein	NA	NA	NA	NA
WP_138929809.1\|151535_153191_+	AMP-binding protein	A0A2K9L3I8	Tupanvirus	2.3e-36	26.0
WP_064051880.1\|153187_154120_+	transglutaminase domain-containing protein	NA	NA	NA	NA
WP_064051879.1\|154146_154896_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.7e-32	38.2

DBSCAN-SWA_5

174142 : 181365

Ralstonia_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138930471.1\|174142_174793_+	transglycosylase SLT domain-containing protein	A0A0K2QQJ4	Ralstonia_phage	2.5e-10	37.8
WP_138929817.1\|174885_176442_+	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	4.9e-12	29.6
WP_064051200.1\|176564_176993_+	hypothetical protein	NA	NA	NA	NA
WP_138929818.1\|177542_178055_+	hypothetical protein	NA	NA	NA	NA
WP_138930472.1\|178159_178546_-	hypothetical protein	NA	NA	NA	NA
WP_138929819.1\|178813_180265_-	nicotinate phosphoribosyltransferase	A0A218M332	Acidovorax_phage	4.4e-124	51.7
WP_138929820.1\|180327_181365_-	bifunctional nicotinamide-nucleotide adenylyltransferase/Nudix hydroxylase	A0A1B0V161	Roseobacter_phage	4.8e-80	47.5

DBSCAN-SWA_6

196636 : 197152

Vibrio_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138929827.1\|196636_197152_+	type II toxin-antitoxin system YhaV family toxin	Q8HA46	Vibrio_phage	5.6e-21	38.1

DBSCAN-SWA_7

201191 : 204353

Leptospira_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064051181.1\|201191_204353_+	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	7.3e-39	20.7

DBSCAN-SWA_8

209717 : 214386

Bacillus_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064051177.1\|209717_211709_-	EAL domain-containing protein	G3MA91	Bacillus_virus	1.2e-18	32.1
WP_138929830.1\|211705_212281_-	DUF4154 domain-containing protein	NA	NA	NA	NA
WP_138929831.1\|212277_214386_-	TonB-dependent receptor	A0A0P0I887	Acinetobacter_phage	1.2e-05	31.0

DBSCAN-SWA_9

219714 : 221817

Streptococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064051171.1\|219714_221817_+	elongation factor G	E4ZFJ7	Streptococcus_phage	4.8e-63	28.0

DBSCAN-SWA_10

226429 : 230730

Ralstonia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064051168.1\|226429_226978_-	helix-turn-helix transcriptional regulator	B2ZXN6	Ralstonia_phage	1.7e-07	48.1
WP_064051167.1\|227502_230730_-	error-prone DNA polymerase	A0A0K1Y8T6	Streptomyces_phage	1.4e-82	27.4

DBSCAN-SWA_11

238168 : 239308

Mycobacterium_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138929839.1\|238168_239308_+	RNA ligase RtcB family protein	A0A222ZMP7	Mycobacterium_phage	2.0e-31	29.4

DBSCAN-SWA_12

259227 : 261117

Acinetobacter_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138929847.1\|259227_260262_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	1.1e-57	40.3
WP_138929848.1\|260310_261117_+	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	9.9e-49	46.2

DBSCAN-SWA_13

273229 : 276319

Leptospira_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138929856.1\|273229_276319_-	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	1.1e-74	23.3

DBSCAN-SWA_14

299300 : 308225

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014631192.1\|299300_299987_+	heavy metal response regulator transcription factor	W8CYM9	Bacillus_phage	9.3e-32	35.7
WP_138929868.1\|299983_301384_+	heavy metal sensor histidine kinase	W8CYF6	Bacillus_phage	1.1e-15	26.8
WP_138929869.1\|301445_302462_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_138929870.1\|302430_302646_+	hypothetical protein	NA	NA	NA	NA
WP_064051122.1\|302694_303828_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_064051121.1\|303900_305604_+	AMP-binding protein	A0A2H4PQU7	Staphylococcus_phage	3.7e-53	33.6
WP_138929871.1\|305759_307307_+	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_138929872.1\|307328_308225_+	3-hydroxyisobutyrate dehydrogenase	A0A077SLF7	Escherichia_phage	4.3e-29	34.7

DBSCAN-SWA_15

313784 : 314912

uncultured_Caudovirales_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138929875.1\|313784_314912_+	acyltransferase family protein	A0A2H4JA46	uncultured_Caudovirales_phage	5.0e-22	29.7

DBSCAN-SWA_16

333161 : 333764

Cyanophage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138929879.1\|333161_333764_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	C7F482	Cyanophage	4.4e-17	34.7

DBSCAN-SWA_17

342176 : 343268

Synechococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064051090.1\|342176_343268_-	phenylacetate-CoA oxygenase/reductase subunit PaaK	M4QRZ2	Synechococcus_phage	2.2e-11	41.8

DBSCAN-SWA_18

363504 : 363828

Acidithiobacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138929897.1\|363504_363828_-	hypothetical protein	K4HZA5	Acidithiobacillus_phage	1.2e-08	63.4

DBSCAN-SWA_19

373133 : 383888

Burkholderia_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064051044.1\|373133_374459_-	MFS transporter	Q6JIH2	Burkholderia_virus	5.5e-105	50.2
WP_064051043.1\|374623_375535_-	LysR family transcriptional regulator	Q6JIH3	Burkholderia_virus	6.3e-76	47.6
WP_138929901.1\|375687_376467_-	phosphohydrolase	NA	NA	NA	NA
WP_138929902.1\|376973_377414_+	hypothetical protein	NA	NA	NA	NA
WP_138929903.1\|378074_380327_+	M1 family metallopeptidase	A0A0P0IY26	Acinetobacter_phage	1.9e-52	27.0
WP_064051039.1\|380418_380742_-	P-II family nitrogen regulator	NA	NA	NA	NA
WP_138929904.1\|380738_383888_-	CusA/CzcA family heavy metal efflux RND transporter	S5VTK5	Leptospira_phage	1.2e-65	24.8

DBSCAN-SWA_20

388556 : 397308

Bacillus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138929907.1\|388556_390035_-	HAMP domain-containing protein	W8CYF6	Bacillus_phage	3.3e-18	27.8
WP_064051033.1\|390031_390697_-	response regulator	NA	NA	NA	NA
WP_138929908.1\|390831_392709_-	molecular chaperone DnaJ	NA	NA	NA	NA
WP_138929909.1\|392719_394501_-	Hsp70 family protein	F2Y0P3	Organic_Lake_phycodnavirus	1.2e-86	36.5
WP_138929910.1\|394663_395992_+	Mn(2+) uptake NRAMP transporter MntH	NA	NA	NA	NA
WP_138930480.1\|396264_397308_+	diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.2e-14	32.7

DBSCAN-SWA_21

401645 : 402896

Megavirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138929915.1\|401645_402896_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	K7YFA0	Megavirus	6.3e-26	26.8

DBSCAN-SWA_22

407668 : 412962

uncultured_Caudovirales_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138929918.1\|407668_409462_-	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	6.1e-14	37.5
WP_138929919.1\|409575_410343_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA
WP_138929920.1\|410693_411500_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_138929921.1\|411639_412962_+\|transposase	IS5 family transposase	K4ICS3	Acidithiobacillus_phage	1.3e-61	52.7

DBSCAN-SWA_23

419484 : 422661

Leptospira_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138929924.1\|419484_422661_-	CusA/CzcA family heavy metal efflux RND transporter	S5VTK5	Leptospira_phage	5.3e-61	22.9

DBSCAN-SWA_24

425837 : 427906

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014631060.1\|425837_426512_+	heavy metal response regulator transcription factor	W8CYM9	Bacillus_phage	6.1e-36	36.5
WP_138929928.1\|426508_427906_+	heavy metal sensor histidine kinase	W8CYF6	Bacillus_phage	5.6e-15	25.5

DBSCAN-SWA_25

441267 : 442509

Bovine_gammaherpesvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064050988.1\|441267_442509_-	type III PLP-dependent enzyme	A0A060D2X4	Bovine_gammaherpesvirus	3.1e-17	25.2

DBSCAN-SWA_26

450006 : 452057

Klosneuvirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064050981.1\|450006_451029_-	2,3-diaminopropionate biosynthesis protein SbnB	A0A1V0SL93	Klosneuvirus	3.3e-09	22.4
WP_064050984.1\|451031_452057_-	2,3-diaminopropionate biosynthesis protein SbnA	A0A1W6JHY1	Lactococcus_phage	4.3e-41	35.6

DBSCAN-SWA_27

466059 : 467526

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138929944.1\|466059_467526_+	diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.1e-13	34.4

DBSCAN-SWA_28

476944 : 479406

Organic_Lake_phycodnavirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138929949.1\|476944_478312_+	mannosyltransferase	F2Y1U7	Organic_Lake_phycodnavirus	9.2e-39	41.4
WP_064050955.1\|478317_479406_+	glycosyltransferase family 2 protein	S5WBE2	Pseudomonas_phage	1.6e-09	26.3

DBSCAN-SWA_29

485121 : 486999

Bacillus_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138929951.1\|485121_486999_-	EAL domain-containing protein	G3MA91	Bacillus_virus	2.6e-23	37.7

DBSCAN-SWA_30

498030 : 499629

Catovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138929956.1\|498030_499629_+	aromatic amino acid lyase	A0A1V0S940	Catovirus	9.4e-51	31.4

DBSCAN-SWA_31

504756 : 505485

Trichoplusia_ni_ascovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138929962.1\|504756_505485_+	3-oxoacyl-ACP reductase FabG	Q06VL0	Trichoplusia_ni_ascovirus	2.9e-15	30.8

DBSCAN-SWA_32

514577 : 515663

Clostridium_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064050928.1\|514577_515663_-	flagellar assembly peptidoglycan hydrolase FlgJ	A0A0A7RU71	Clostridium_phage	3.2e-18	38.8

DBSCAN-SWA_33

527849 : 530534

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138929971.1\|527849_530534_+	EAL domain-containing protein	A0A127AWB9	Bacillus_phage	1.3e-12	37.3

DBSCAN-SWA_34

544019 : 544478

Acinetobacter_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064050907.1\|544019_544478_-	(2Fe-2S)-binding protein	A0A0P0IVM8	Acinetobacter_phage	3.1e-07	30.0

DBSCAN-SWA_35

551437 : 553801

Streptococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138929979.1\|551437_553801_-	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	2.7e-102	37.8

DBSCAN-SWA_36

565043 : 575436

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064050890.1\|565043_566591_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.1e-08	32.9
WP_064050889.1\|566757_567225_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_138929987.1\|567238_567583_-	hypothetical protein	NA	NA	NA	NA
WP_138929988.1\|568404_575436_+	Type III effector protein (Skwp5)	A0A1S5SC50	Streptococcus_phage	2.8e-06	32.1

DBSCAN-SWA_37

584981 : 585968

Burkholderia_phage(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064051257.1\|584981_585968_+\|transposase	IS5 family transposase	E5E3P6	Burkholderia_phage	6.4e-151	82.0

DBSCAN-SWA_38

589910 : 595830

Acinetobacter_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138929992.1\|589910_591049_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	6.5e-62	43.6
WP_138929993.1\|591394_593164_-	calcium-binding protein	NA	NA	NA	NA
WP_064050884.1\|593655_595830_+	type I secretion system permease/ATPase	W8CYL7	Bacillus_phage	5.2e-44	29.9

DBSCAN-SWA_39

621396 : 626330

Ralstonia_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138930003.1\|621396_621771_-	2OG-Fe(II) oxygenase	A0A1L7N0V4	Ralstonia_phage	1.1e-23	50.5
WP_138930004.1\|621909_623565_-	alpha,alpha-trehalase TreA	NA	NA	NA	NA
WP_019719206.1\|623884_624859_+	cysteine synthase A	A0A1X9I5F1	Streptococcus_phage	1.6e-45	37.9
WP_138930005.1\|625124_626330_+	chitinase	M1HC48	Acanthocystis_turfacea_Chlorella_virus	1.1e-35	36.5

DBSCAN-SWA_40

629876 : 634238

Trichoplusia_ni_ascovirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064050858.1\|629876_630653_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	1.8e-18	31.3
WP_064050857.1\|630678_630960_+	hypothetical protein	NA	NA	NA	NA
WP_014630850.1\|630994_631339_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_138930006.1\|631404_632085_+	anti-sigma factor	NA	NA	NA	NA
WP_138930007.1\|632078_633194_+	NAD(P)-binding protein	NA	NA	NA	NA
WP_138930008.1\|633206_634238_+	alcohol dehydrogenase catalytic domain-containing protein	A0A2K9L7I1	Tupanvirus	6.8e-26	25.5

DBSCAN-SWA_41

641774 : 643097

Acidithiobacillus_phage(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138928742.1\|641774_643097_+\|transposase	IS5 family transposase	K4ICS3	Acidithiobacillus_phage	1.3e-61	52.7

DBSCAN-SWA_42

646710 : 654582

Bacillus_virus(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138930015.1\|646710_648300_+	PAS domain-containing protein	A0A1B0V854	Salmonella_phage	1.2e-34	51.5
WP_138930016.1\|648316_651853_-	EAL domain-containing protein	G3MA91	Bacillus_virus	1.9e-11	27.7
WP_138930017.1\|652131_654582_+	diguanylate cyclase	G3MA91	Bacillus_virus	5.9e-12	33.1

DBSCAN-SWA_43

659168 : 660743

Enterococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138930021.1\|659168_660743_-	alkyl hydroperoxide reductase subunit F	A0A249XZT7	Enterococcus_phage	6.7e-33	30.3

DBSCAN-SWA_44

707954 : 710549

Moumouvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138930493.1\|707954_710549_+	FAD-dependent oxidoreductase	M1PCM5	Moumouvirus	1.5e-10	30.4

DBSCAN-SWA_45

724600 : 727096

Klosneuvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138930042.1\|724600_727096_+	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	A0A1V0SKB7	Klosneuvirus	4.5e-23	27.9

DBSCAN-SWA_46

741581 : 742751

Pacmanvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064050785.1\|741581_742751_-	cysteine desulfurase	A0A1X6WFP1	Pacmanvirus	7.2e-32	27.2

DBSCAN-SWA_47

749557 : 766518

Tupanvirus(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138930053.1\|749557_750478_+	sulfotransferase	M4QPS9	Synechococcus_phage	1.1e-27	30.8
WP_138930054.1\|750542_751160_+	adenylyl-sulfate kinase	A0A2K9L4R9	Tupanvirus	8.7e-21	33.0
WP_138930055.1\|751146_766518_+	amino acid adenylation domain-containing protein	A0A2K9KZV5	Tupanvirus	3.4e-174	27.8

DBSCAN-SWA_48

779223 : 794714

Acidithiobacillus_phage(20.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138928742.1\|779223_780546_-\|transposase	IS5 family transposase	K4ICS3	Acidithiobacillus_phage	1.3e-61	52.7
WP_138930061.1\|781137_781611_-	hypothetical protein	NA	NA	NA	NA
WP_138928313.1\|782316_782511_-	hypothetical protein	NA	NA	NA	NA
WP_138929677.1\|782514_783555_-	site-specific tyrosine recombinase XerC	S5W9T9	Leptospira_phage	5.6e-20	33.9
WP_138928312.1\|783601_786646_-	toprim domain-containing protein	A0A1S5RFI1	Helicobacter_phage	1.9e-23	25.6
WP_138928311.1\|786681_787194_+	helix-turn-helix domain-containing protein	Q8LTJ3	Vibrio_virus	1.3e-06	35.1
WP_138928310.1\|787380_787596_+	hypothetical protein	NA	NA	NA	NA
WP_138928309.1\|787592_788087_+	hypothetical protein	NA	NA	NA	NA
WP_138928308.1\|788629_788923_+	hypothetical protein	NA	NA	NA	NA
WP_138928307.1\|789081_789498_-	DUF4279 domain-containing protein	NA	NA	NA	NA
WP_138930062.1\|789509_794714_-	RHS repeat protein	A0A2H4JHK7	uncultured_Caudovirales_phage	1.7e-08	33.3

DBSCAN-SWA_49

823550 : 827448

Prochlorococcus_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064050745.1\|823550_824294_-	acetoacetyl-CoA reductase	A0A0K0KVL6	Prochlorococcus_phage	2.3e-07	27.2
WP_138930074.1\|824317_824875_-	TIGR01841 family phasin	NA	NA	NA	NA
WP_064050741.1\|825004_825250_-	hypothetical protein	NA	NA	NA	NA
WP_064051257.1\|825390_826377_+\|transposase	IS5 family transposase	E5E3P6	Burkholderia_phage	6.4e-151	82.0
WP_138930075.1\|826770_827448_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	6.0e-07	31.0

DBSCAN-SWA_50

870118 : 872255

Burkholderia_virus(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064050709.1\|870118_870427_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A141GEX6	Brucella_phage	8.2e-20	47.9
WP_016722339.1\|870423_870729_+	putative addiction module antidote protein	A4JWV1	Burkholderia_virus	1.0e-14	51.2
WP_138930505.1\|870977_872255_+	MFS transporter	Q6JIH2	Burkholderia_virus	8.3e-42	31.7

DBSCAN-SWA_51

875532 : 877155

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064050704.1\|875532_877155_-	AMP-binding protein	A0A2H4PQU7	Staphylococcus_phage	4.9e-47	30.0

DBSCAN-SWA_52

897985 : 899505

Planktothrix_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064051821.1\|897985_898711_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.3e-09	32.2
WP_064051820.1\|898707_899505_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	5.6e-12	22.0

DBSCAN-SWA_53

903042 : 914774

Bacillus_virus(20.0%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064051816.1\|903042_905739_-	diguanylate cyclase	G3MA91	Bacillus_virus	3.2e-19	35.9
WP_064051815.1\|905833_906265_-	hypothetical protein	NA	NA	NA	NA
WP_064051814.1\|906435_907233_+\|protease	YhfC family intramembrane metalloprotease	NA	NA	NA	NA
WP_138930114.1\|908321_909863_-	MFS transporter	Q6JIH2	Burkholderia_virus	7.7e-26	41.5
WP_138930508.1\|910125_911091_-	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	2.6e-64	45.3
WP_064051812.1\|911348_912182_-	hypothetical protein	NA	NA	NA	NA
WP_064051811.1\|912496_913501_-	ParB/RepB/Spo0J family partition protein	NA	NA	NA	NA
WP_064051810.1\|913497_914166_-	ParA family protein	K7R2R7	Vibrio_phage	2.1e-20	30.1
WP_011003323.1\|914570_914774_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	1.8e-20	73.1

DBSCAN-SWA_54

919641 : 925400

Moraxella_phage(50.0%)

integrase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138930116.1\|919641_920946_+	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	2.2e-66	38.5
WP_138930117.1\|921226_922525_-\|integrase	integrase	NA	NA	NA	NA
WP_064051807.1\|923009_925400_+	hybrid sensor histidine kinase/response regulator	A0A1V0SGX0	Hokovirus	1.4e-21	26.9

DBSCAN-SWA_55

936338 : 937934

Streptococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064051797.1\|936338_937934_+	peptide chain release factor 3	A0A1S5SF82	Streptococcus_phage	1.4e-30	25.7

DBSCAN-SWA_56

956329 : 957370

Enterobacteria_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138930136.1\|956329_957370_+	substrate-binding domain-containing protein	C6ZCU4	Enterobacteria_phage	1.4e-26	28.9

DBSCAN-SWA_57

961330 : 962875

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064051773.1\|961330_962875_-	xylose ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	9.8e-13	28.8

DBSCAN-SWA_58

1004722 : 1007917

Leptospira_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138930154.1\|1004722_1007917_-	MMPL family transporter	S5VTK5	Leptospira_phage	1.3e-64	22.6

DBSCAN-SWA_59

1010976 : 1012506

Tupanvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138930156.1\|1010976_1012506_+	catalase	A0A2K9L572	Tupanvirus	4.6e-103	40.8

DBSCAN-SWA_60

1026388 : 1028149

Flavobacterium_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064051734.1\|1026388_1028149_-	cytochrome c oxidase subunit I	R9VX24	Flavobacterium_phage	8.3e-32	50.0

DBSCAN-SWA_61

1033456 : 1034926

Synechococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011004805.1\|1033456_1034926_+	glucose-6-phosphate dehydrogenase	E3SJC5	Synechococcus_phage	1.1e-72	36.3

DBSCAN-SWA_62

1040111 : 1043802

Bacillus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016725055.1\|1040111_1040843_+	response regulator transcription factor	W8CYM9	Bacillus_phage	1.3e-28	35.4
WP_138930170.1\|1040849_1042166_+	two-component sensor histidine kinase	W8CYF6	Bacillus_phage	2.8e-16	25.0
WP_138930171.1\|1042329_1043802_+	Do family serine endopeptidase	A0A1B1IT49	uncultured_Mediterranean_phage	1.6e-25	29.3

DBSCAN-SWA_63

1059796 : 1062337

Moraxella_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138930178.1\|1059796_1062337_+	filamentous hemagglutinin N-terminal domain-containing protein	A0A0R6PJK4	Moraxella_phage	6.3e-17	31.0

DBSCAN-SWA_64

1074366 : 1075692

Escherichia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138930185.1\|1074366_1075692_-	DUF3500 domain-containing protein	A0A0H3UCT5	Escherichia_phage	1.3e-10	51.9

DBSCAN-SWA_65

1085834 : 1087538

uncultured_Caudovirales_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138930188.1\|1085834_1087538_-	STAS domain-containing protein	A0A2H4J153	uncultured_Caudovirales_phage	1.9e-12	29.1

DBSCAN-SWA_66

1093154 : 1094558

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064051694.1\|1093154_1094558_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	6.2e-22	39.2

DBSCAN-SWA_67

1109417 : 1114406

uncultured_Mediterranean_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138930201.1\|1109417_1111259_+	hypothetical protein	A0A1B1IVF2	uncultured_Mediterranean_phage	1.4e-66	31.9
WP_064051681.1\|1111279_1111486_+	hypothetical protein	NA	NA	NA	NA
WP_064051680.1\|1111506_1112604_+	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
WP_064051679.1\|1112834_1114406_+	carbamoyltransferase	A0A292GAM4	Xanthomonas_phage	1.1e-38	30.6

DBSCAN-SWA_68

1122777 : 1123378

Escherichia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138930208.1\|1122777_1123056_+	Killer protein	A0A2L1IV28	Escherichia_phage	6.7e-21	50.0
WP_064051669.1\|1123066_1123378_+	HigA family addiction module antidote protein	I6ZVM3	Aeromonas_phage	1.8e-06	35.4

DBSCAN-SWA_69

1133401 : 1139951

Leptospira_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138930211.1\|1133401_1136506_-	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	8.2e-67	23.9
WP_138930212.1\|1136502_1137630_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_138930213.1\|1137626_1139138_-	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_014632003.1\|1139264_1139951_+	response regulator transcription factor	W8CYM9	Bacillus_phage	6.5e-25	32.3

DBSCAN-SWA_70

1148284 : 1151452

Tupanvirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138930219.1\|1148284_1149493_-	cyclopropane fatty acyl phospholipid synthase	A0A2K9L4K8	Tupanvirus	4.0e-70	38.6
WP_138930220.1\|1149501_1149726_-	hypothetical protein	NA	NA	NA	NA
WP_064051654.1\|1150135_1150612_-	SgcJ/EcaC family oxidoreductase	NA	NA	NA	NA
WP_064051653.1\|1150771_1151452_-	response regulator transcription factor	W8CYM9	Bacillus_phage	6.4e-33	35.7

DBSCAN-SWA_71

1169022 : 1174191

Bacillus_thuringiensis_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064051642.1\|1169022_1169436_+	response regulator	Q56AR1	Bacillus_thuringiensis_phage	1.4e-11	39.3
WP_138930229.1\|1169454_1171635_+	chemotaxis protein CheA	NA	NA	NA	NA
WP_064051970.1\|1171704_1172196_+	chemotaxis protein CheW	NA	NA	NA	NA
WP_138930230.1\|1172367_1174191_+	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	9.8e-12	33.5

DBSCAN-SWA_72

1179732 : 1180134

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011004652.1\|1179732_1180134_+	chemotaxis protein CheY	W8CYM9	Bacillus_phage	5.0e-09	32.3

DBSCAN-SWA_73

1193927 : 1194689

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064051628.1\|1193927_1194689_+	RNA polymerase sigma factor FliA	G9J2D5	Bacillus_phage	2.9e-10	27.0

DBSCAN-SWA_74

1200610 : 1201990

Erysipelothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064051622.1\|1200610_1201990_-	FAD-containing oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	3.9e-61	31.9

DBSCAN-SWA_75

1207059 : 1227434

Moraxella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138930246.1\|1207059_1216938_-	filamentous hemagglutinin N-terminal domain-containing protein	A0A0R6PJK4	Moraxella_phage	5.5e-24	29.3
WP_138930247.1\|1217202_1224693_-	type III effector protein skwp2	A0A1S5SDF1	Streptococcus_phage	5.5e-08	29.4
WP_064051615.1\|1225141_1225672_-	nitrous oxide reductase accessory protein NosL	NA	NA	NA	NA
WP_138930248.1\|1225668_1226493_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_138930249.1\|1226489_1227434_-	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	2.7e-29	34.1

DBSCAN-SWA_76

1243852 : 1244839

Burkholderia_phage(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064051257.1\|1243852_1244839_+\|transposase	IS5 family transposase	E5E3P6	Burkholderia_phage	6.4e-151	82.0

DBSCAN-SWA_77

1249439 : 1250321

Prochlorococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138930261.1\|1249439_1250321_+	SDR family NAD(P)-dependent oxidoreductase	A0A0K0KVL6	Prochlorococcus_phage	1.4e-11	30.5

DBSCAN-SWA_78

1255028 : 1258210

Staphylococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138930265.1\|1255028_1256606_-	polyamine aminopropyltransferase	A0A1C9C533	Heterosigma_akashiwo_virus	2.5e-11	26.8
WP_138930266.1\|1256753_1257464_-	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	3.2e-11	24.3
WP_138930267.1\|1257460_1258210_-	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	9.0e-12	23.1

DBSCAN-SWA_79

1264878 : 1267027

Cyanophage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138930270.1\|1264878_1265301_+	adenosylmethionine decarboxylase	A0A1D7SEZ2	Cyanophage	5.4e-14	44.6
WP_138930271.1\|1266040_1267027_-\|transposase	IS5 family transposase	E5E3P6	Burkholderia_phage	6.4e-151	82.0

DBSCAN-SWA_80

1271749 : 1273706

Leptospira_phage(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138928328.1\|1271749_1272100_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	5.6e-17	39.4
WP_138929681.1\|1272131_1273706_+\|transposase	IS66 family transposase	S5VLC8	Leptospira_phage	3.3e-40	36.2

DBSCAN-SWA_81

1282219 : 1286146

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138930274.1\|1282219_1283245_+	substrate-binding domain-containing protein	C6ZCU4	Enterobacteria_phage	1.7e-24	29.0
WP_064051593.1\|1283334_1284732_+	PTS sucrose transporter subunit IIBC	NA	NA	NA	NA
WP_138930275.1\|1284724_1286146_+	sucrose-6-phosphate hydrolase	S6ATV4	Bacillus_phage	1.2e-20	24.2

DBSCAN-SWA_82

1302079 : 1304617

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138930281.1\|1302079_1304212_-	UvrD-helicase domain-containing protein	A7KV33	Bacillus_phage	8.7e-60	29.2
WP_138930282.1\|1304284_1304617_-	YnfA family protein	A0A218MNG8	uncultured_virus	1.3e-26	60.6

DBSCAN-SWA_83

1311765 : 1313454

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138930287.1\|1311765_1313454_+	AMP-binding protein	A0A2H4PQU7	Staphylococcus_phage	6.4e-50	32.3

DBSCAN-SWA_84

1351268 : 1352813

Salmonella_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064051550.1\|1351268_1352813_+	PAS domain-containing methyl-accepting chemotaxis protein	A0A1B0V854	Salmonella_phage	2.7e-42	52.8

DBSCAN-SWA_85

1369506 : 1371075

uncultured_Caudovirales_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064051544.1\|1369506_1371075_+	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	3.2e-11	47.8

DBSCAN-SWA_86

1377568 : 1379545

Bacillus_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138930316.1\|1377568_1378915_+	diguanylate cyclase	G3MA91	Bacillus_virus	6.1e-19	33.1
WP_064051532.1\|1378981_1379545_-	acyloxyacyl hydrolase	A0A2H4J0I5	uncultured_Caudovirales_phage	8.8e-12	32.7

DBSCAN-SWA_87

1389292 : 1390030

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014631772.1\|1389292_1390030_+	response regulator	W8CYM9	Bacillus_phage	3.6e-29	33.9

DBSCAN-SWA_88

1394572 : 1395298

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138930321.1\|1394572_1395298_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	4.9e-39	41.8

DBSCAN-SWA_89

1403716 : 1405942

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138930327.1\|1403716_1405942_-	type I secretion system permease/ATPase	W8CYL7	Bacillus_phage	1.3e-21	24.0

DBSCAN-SWA_90

1422212 : 1424105

Hokovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138930527.1\|1422212_1424105_-	response regulator	A0A1V0SGX0	Hokovirus	4.1e-29	30.4

DBSCAN-SWA_91

1430791 : 1432372

Moraxella_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138930333.1\|1430791_1432372_+	TerC family protein	A0A0R6PEZ3	Moraxella_phage	2.2e-36	43.5

DBSCAN-SWA_92

1451187 : 1455719

Bacillus_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138930337.1\|1451187_1453932_+	EAL domain-containing protein	G3MA91	Bacillus_virus	6.0e-21	34.9
WP_138930338.1\|1454150_1454960_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_138930339.1\|1454981_1455719_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	3.4e-19	32.8

DBSCAN-SWA_93

1466285 : 1470883

Planktothrix_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064051432.1\|1466285_1468112_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	1.6e-17	30.7
WP_138930343.1\|1468123_1468867_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	7.1e-09	25.6
WP_064051434.1\|1468961_1469279_-	hypothetical protein	NA	NA	NA	NA
WP_064051435.1\|1469686_1470883_+	cytochrome P450	A0A2I2L481	Orpheovirus	5.1e-09	21.7

DBSCAN-SWA_94

1501796 : 1505529

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138930360.1\|1501796_1502291_+	arsenate reductase ArsC	A0A2H4J8A6	uncultured_Caudovirales_phage	2.2e-27	47.8
WP_138930533.1\|1502296_1502962_+	aquaporin family protein	NA	NA	NA	NA
WP_138930361.1\|1503133_1504114_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_138930362.1\|1504461_1505529_+	alcohol dehydrogenase catalytic domain-containing protein	A0A2K9L7I1	Tupanvirus	1.9e-87	47.2

DBSCAN-SWA_95

1508593 : 1521068

Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage(20.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138930535.1\|1508593_1509538_-\|transposase	IS481 family transposase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	1.2e-114	64.2
WP_138930365.1\|1510330_1511866_-	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_138930366.1\|1511885_1515092_-	multidrug efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	2.0e-68	22.3
WP_138930367.1\|1515128_1516445_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_138930368.1\|1516756_1517830_-	alpha/beta hydrolase	S4W4Z4	Pandoravirus	1.2e-17	33.6
WP_064051402.1\|1518111_1519059_+	LysR family transcriptional regulator	Q6JIH3	Burkholderia_virus	4.3e-11	24.1
WP_064051401.1\|1519161_1519941_+	Mut7-C ubiquitin/RNAse domain-containing protein	NA	NA	NA	NA
WP_064051400.1\|1520048_1521068_-	alpha/beta hydrolase	M1PGN2	Moumouvirus	5.6e-57	37.9

DBSCAN-SWA_96

1525353 : 1527291

Moumouvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138930370.1\|1525353_1527291_+	molecular chaperone DnaK	A0A2P1ELQ7	Moumouvirus	3.0e-144	48.7

DBSCAN-SWA_97

1541209 : 1542244

Leptospira_phage(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138928950.1\|1541209_1542244_+\|transposase	IS630 family transposase	S5VXX4	Leptospira_phage	1.9e-44	33.1

DBSCAN-SWA_98

1546260 : 1547583

Acidithiobacillus_phage(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138928742.1\|1546260_1547583_+\|transposase	IS5 family transposase	K4ICS3	Acidithiobacillus_phage	1.3e-61	52.7

DBSCAN-SWA_99

1554874 : 1559493

Tupanvirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064051387.1\|1554874_1555900_+	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	4.0e-79	45.1
WP_138930379.1\|1555950_1557390_+	PAS domain-containing protein	NA	NA	NA	NA
WP_138930380.1\|1557534_1559079_+	hypothetical protein	A0A2H4J162	uncultured_Caudovirales_phage	3.5e-10	62.3
WP_064051384.1\|1559184_1559493_-	H-NS histone family protein	F8TUP5	EBPR_podovirus	3.0e-14	40.0

DBSCAN-SWA_100

1587166 : 1596943

Moraxella_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138930393.1\|1587166_1596943_+	filamentous hemagglutinin N-terminal domain-containing protein	A0A0R6PJK4	Moraxella_phage	4.3e-45	38.0

DBSCAN-SWA_101

1615083 : 1616487

Streptococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138930403.1\|1615083_1616487_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	A0A1X9I5H2	Streptococcus_phage	1.3e-16	21.9

DBSCAN-SWA_102

1619992 : 1622447

Lake_Baikal_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003265287.1\|1619992_1620196_-	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	1.8e-23	81.8
WP_064051347.1\|1620551_1622447_+	potassium transporter Kup	M1IBC2	Acanthocystis_turfacea_Chlorella_virus	5.2e-72	33.4

DBSCAN-SWA_103

1634154 : 1639254

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138930540.1\|1634154_1634838_-	response regulator	W8CYM9	Bacillus_phage	7.4e-29	35.8
WP_138930411.1\|1634996_1636145_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_138930412.1\|1636137_1639254_+	CusA/CzcA family heavy metal efflux RND transporter	S5VTK5	Leptospira_phage	1.2e-65	23.6

DBSCAN-SWA_104

1653463 : 1655038

uncultured_Caudovirales_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064051316.1\|1653463_1655038_+	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	1.1e-08	58.7

DBSCAN-SWA_105

1671697 : 1674133

Megavirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064051308.1\|1671697_1672825_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	L7Y4I8	Megavirus	6.2e-33	29.6
WP_064051307.1\|1672861_1674133_+	UDP-N-acetyl-D-mannosamine dehydrogenase	A0A127AXI2	Bacillus_phage	3.1e-28	27.2

DBSCAN-SWA_106

1678021 : 1678534

Paramecium_bursaria_Chlorella_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014631577.1\|1678021_1678534_+	acyltransferase	M1HKK6	Paramecium_bursaria_Chlorella_virus	9.2e-08	51.9

DBSCAN-SWA_107

1685076 : 1689046

Tupanvirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064051332.1\|1685076_1686264_+	DegT/DnrJ/EryC1/StrS aminotransferase family protein	A0A2K9L0G1	Tupanvirus	2.6e-106	48.0
WP_064051297.1\|1686346_1687018_+	hypothetical protein	NA	NA	NA	NA
WP_138930425.1\|1687042_1689046_-	polysaccharide biosynthesis protein	L7RD47	Acanthamoeba_polyphaga_moumouvirus	3.5e-10	25.1

DBSCAN-SWA_108

1698088 : 1703926

uncultured_Mediterranean_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138930428.1\|1698088_1703926_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	8.5e-174	37.4

DBSCAN-SWA_109

1714128 : 1715088

uncultured_Caudovirales_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138930434.1\|1714128_1715088_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	4.8e-10	37.7

DBSCAN-SWA_110

1720529 : 1722077

Escherichia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064051274.1\|1720529_1722077_-	nitrate reductase subunit beta	A0A077SL61	Escherichia_phage	7.5e-21	47.5

DBSCAN-SWA_111

1730309 : 1731329

Phage_TP(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064051329.1\|1730309_1731329_+	U32 family peptidase	Q6DW11	Phage_TP	9.0e-23	32.3

DBSCAN-SWA_112

1734685 : 1739062

Clostridium_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138930446.1\|1734685_1736740_-	ribonucleoside triphosphate reductase	D9ZNH0	Clostridium_phage	7.4e-141	45.4
WP_064051264.1\|1737130_1737736_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_138930447.1\|1737862_1739062_+	glycine C-acetyltransferase	G9E4Q1	Emiliania_huxleyi_virus	2.4e-38	30.0

DBSCAN-SWA_113

1757111 : 1759334

Chrysochromulina_ericina_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064051465.1\|1757111_1757888_-	glucose 1-dehydrogenase	A0A0N9R355	Chrysochromulina_ericina_virus	1.1e-15	25.7
WP_064051464.1\|1757859_1758330_-	hypothetical protein	NA	NA	NA	NA
WP_064051463.1\|1758338_1759334_-	D-glycerate dehydrogenase	A0A2R8FDS8	Brazilian_cedratvirus	1.6e-19	29.6

DBSCAN-SWA_114

1762907 : 1769585

Streptococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138930455.1\|1762907_1769585_+	type III effector protein	A0A1S5SDF1	Streptococcus_phage	2.2e-08	30.6

DBSCAN-SWA_115

1778422 : 1796347

Tupanvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138930459.1\|1778422_1796347_-	amino acid adenylation domain-containing protein	A0A2K9KZV5	Tupanvirus	3.1e-73	32.1

DBSCAN-SWA_116

1800747 : 1828961

Paenibacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138930462.1\|1800747_1818009_-	SDR family NAD(P)-dependent oxidoreductase	D0R7J2	Paenibacillus_phage	1.3e-33	32.0
WP_138930463.1\|1818008_1828961_-	amino acid adenylation domain-containing protein	A0A2K9KZV5	Tupanvirus	1.8e-84	26.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP039339

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP039340

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection