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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP039711 Thermoactinomyces vulgaris strain 2H plasmid pTvu19, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP039710 Thermoactinomyces vulgaris strain 2H chromosome, complete genome 2 crisprs csa3,cas6,RT,WYL,cas4,cmr6gr7,DEDDh 0 0 202 0

Results visualization

1. NZ_CP039710
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP039710_1 1234610-1235040 Orphan NA
6 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP039710_2 2330914-2331019 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 3972 1 Paramecium_bursaria_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_2 8368 : 9271 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_3 20335 : 21013 1 Pandoravirus(100.0%) NA NA
DBSCAN-SWA_4 27540 : 32384 4 Vibrio_phage(50.0%) NA NA
DBSCAN-SWA_5 36161 : 37840 2 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_6 41688 : 42342 1 Tenacibaculum_phage(100.0%) NA NA
DBSCAN-SWA_7 53944 : 67070 8 Streptococcus_phage(40.0%) NA NA
DBSCAN-SWA_8 70640 : 71174 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_9 74397 : 75795 1 Catovirus(100.0%) tRNA NA
DBSCAN-SWA_10 85493 : 90893 5 Enterobacteria_phage(50.0%) protease NA
DBSCAN-SWA_11 100582 : 114143 12 Chrysochromulina_ericina_virus(16.67%) tRNA NA
DBSCAN-SWA_12 125523 : 126066 1 Paenibacillus_phage(100.0%) NA NA
DBSCAN-SWA_13 132593 : 134950 2 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_14 142013 : 143987 1 Hokovirus(100.0%) tRNA NA
DBSCAN-SWA_15 147568 : 153037 7 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_16 162428 : 164138 1 Bacteriophage(100.0%) NA NA
DBSCAN-SWA_17 176705 : 177578 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_18 187913 : 190386 2 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_19 194184 : 196606 2 Cyanophage(50.0%) NA NA
DBSCAN-SWA_20 199789 : 204131 6 Pandoravirus(33.33%) tRNA NA
DBSCAN-SWA_21 207828 : 208269 1 Clostridium_phage(100.0%) NA NA
DBSCAN-SWA_22 211713 : 220825 7 Bacillus_phage(50.0%) tRNA NA
DBSCAN-SWA_23 224280 : 236643 10 Bacillus_virus(40.0%) NA NA
DBSCAN-SWA_24 246851 : 254141 9 Leptospira_phage(40.0%) protease NA
DBSCAN-SWA_25 258345 : 270838 12 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_26 282377 : 283850 1 Indivirus(100.0%) NA NA
DBSCAN-SWA_27 296789 : 299533 2 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_28 309726 : 311346 1 Only_Syngen_Nebraska_virus(100.0%) NA NA
DBSCAN-SWA_29 315462 : 333484 20 Klosneuvirus(11.11%) protease NA
DBSCAN-SWA_30 345603 : 346047 1 uncultured_marine_phage(100.0%) NA NA
DBSCAN-SWA_31 354439 : 357764 4 Pseudomonas_phage(50.0%) NA NA
DBSCAN-SWA_32 364074 : 366518 2 Tupanvirus(50.0%) NA NA
DBSCAN-SWA_33 372557 : 378069 6 Cafeteria_roenbergensis_virus(33.33%) NA NA
DBSCAN-SWA_34 381998 : 392317 12 Staphylococcus_phage(14.29%) NA NA
DBSCAN-SWA_35 396518 : 397631 1 Pseudomonas_phage(100.0%) NA NA
DBSCAN-SWA_36 402904 : 410563 9 Klosneuvirus(25.0%) NA NA
DBSCAN-SWA_37 413618 : 420339 6 Planktothrix_phage(20.0%) NA NA
DBSCAN-SWA_38 423670 : 426843 2 uncultured_Mediterranean_phage(50.0%) NA NA
DBSCAN-SWA_39 438795 : 440298 1 Propionibacterium_phage(100.0%) NA NA
DBSCAN-SWA_40 448610 : 458569 12 Streptococcus_phage(33.33%) NA NA
DBSCAN-SWA_41 467324 : 477624 7 Streptococcus_phage(25.0%) NA NA
DBSCAN-SWA_42 482289 : 483795 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_43 494762 : 498851 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_44 523837 : 524941 1 Saudi_moumouvirus(100.0%) NA NA
DBSCAN-SWA_45 535729 : 539245 1 Dickeya_phage(100.0%) NA NA
DBSCAN-SWA_46 547672 : 548083 1 Synechococcus_phage(100.0%) NA NA
DBSCAN-SWA_47 575180 : 587265 9 Ostreococcus_lucimarinus_virus(16.67%) NA NA
DBSCAN-SWA_48 599961 : 600801 1 Indivirus(100.0%) NA NA
DBSCAN-SWA_49 604916 : 605759 1 Acanthocystis_turfacea_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_50 609044 : 609320 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_51 621184 : 631332 8 Bacillus_phage(25.0%) NA NA
DBSCAN-SWA_52 644814 : 653381 11 Staphylococcus_phage(42.86%) NA NA
DBSCAN-SWA_53 659837 : 661256 1 Erysipelothrix_phage(100.0%) NA NA
DBSCAN-SWA_54 678591 : 685331 9 Pneumococcus_phage(40.0%) NA NA
DBSCAN-SWA_55 688958 : 693256 4 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_56 722514 : 727054 4 Bathycoccus_sp._RCC1105_virus(50.0%) NA NA
DBSCAN-SWA_57 734481 : 735958 2 Bacillus_thuringiensis_phage(50.0%) NA NA
DBSCAN-SWA_58 742626 : 746622 3 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_59 760539 : 763398 3 Tupanvirus(50.0%) protease NA
DBSCAN-SWA_60 788385 : 790104 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_61 809777 : 810503 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_62 817872 : 821365 5 Brevibacillus_phage(50.0%) NA NA
DBSCAN-SWA_63 824871 : 830248 4 Bacillus_phage(100.0%) protease NA
DBSCAN-SWA_64 860439 : 864665 5 Bacillus_phage(66.67%) NA NA
DBSCAN-SWA_65 874797 : 880182 5 Paramecium_bursaria_Chlorella_virus(50.0%) NA NA
DBSCAN-SWA_66 883602 : 884892 1 Klosneuvirus(100.0%) tRNA NA
DBSCAN-SWA_67 889366 : 900714 10 Bacillus_virus(25.0%) tRNA NA
DBSCAN-SWA_68 906349 : 907885 1 Vibrio_phage(100.0%) NA NA
DBSCAN-SWA_69 917304 : 918804 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_70 924643 : 925357 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_71 941516 : 948146 6 Indivirus(33.33%) NA NA
DBSCAN-SWA_72 954991 : 955828 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_73 967887 : 977264 7 Staphylococcus_phage(25.0%) tRNA NA
DBSCAN-SWA_74 987145 : 996713 7 Streptococcus_phage(25.0%) NA NA
DBSCAN-SWA_75 1002631 : 1007907 8 Xanthomonas_phage(33.33%) NA NA
DBSCAN-SWA_76 1019017 : 1028118 5 Vibrio_phage(25.0%) NA NA
DBSCAN-SWA_77 1055401 : 1056064 1 Pseudomonas_phage(100.0%) NA NA
DBSCAN-SWA_78 1064802 : 1065780 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_79 1073361 : 1077305 3 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_80 1089121 : 1098263 14 Streptococcus_phage(33.33%) NA NA
DBSCAN-SWA_81 1104886 : 1105816 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_82 1112309 : 1113569 1 Pandoravirus(100.0%) NA NA
DBSCAN-SWA_83 1134080 : 1135654 2 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_84 1140540 : 1152713 10 Bodo_saltans_virus(40.0%) tRNA NA
DBSCAN-SWA_85 1159423 : 1162147 1 Acanthocystis_turfacea_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_86 1171623 : 1177740 6 Abalone_herpesvirus(25.0%) tRNA NA
DBSCAN-SWA_87 1185194 : 1186862 1 Bodo_saltans_virus(100.0%) NA NA
DBSCAN-SWA_88 1192466 : 1193336 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_89 1198640 : 1201310 3 uncultured_Mediterranean_phage(50.0%) NA NA
DBSCAN-SWA_90 1206828 : 1209899 4 Trichoplusia_ni_ascovirus(33.33%) NA NA
DBSCAN-SWA_91 1221909 : 1222716 1 Emiliania_huxleyi_virus(100.0%) NA NA
DBSCAN-SWA_92 1227111 : 1228259 2 Paenibacillus_phage(50.0%) holin NA
DBSCAN-SWA_93 1232293 : 1234409 2 Burkholderia_phage(100.0%) NA NA
DBSCAN-SWA_94 1239407 : 1242039 3 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_95 1249615 : 1252002 2 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_96 1269294 : 1276056 5 Thermus_phage(33.33%) protease,tRNA NA
DBSCAN-SWA_97 1279259 : 1280859 2 Flavobacterium_phage(50.0%) NA NA
DBSCAN-SWA_98 1289038 : 1290007 1 Paramecium_bursaria_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_99 1295056 : 1296190 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_100 1302024 : 1302735 1 Acanthocystis_turfacea_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_101 1308579 : 1310394 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_102 1315369 : 1317616 1 Cafeteria_roenbergensis_virus(100.0%) NA NA
DBSCAN-SWA_103 1324907 : 1326597 2 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_104 1334679 : 1359513 5 Tupanvirus(66.67%) NA NA
DBSCAN-SWA_105 1363661 : 1368721 3 Mycobacterium_phage(33.33%) NA NA
DBSCAN-SWA_106 1377746 : 1387993 11 Bacillus_phage(80.0%) NA NA
DBSCAN-SWA_107 1400013 : 1407864 6 Catovirus(33.33%) tRNA NA
DBSCAN-SWA_108 1427228 : 1427723 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_109 1442570 : 1447138 5 Streptococcus_phage(66.67%) tRNA NA
DBSCAN-SWA_110 1458316 : 1462353 3 Microbacterium_phage(50.0%) NA NA
DBSCAN-SWA_111 1471485 : 1471920 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_112 1483630 : 1486672 4 Dishui_lake_phycodnavirus(50.0%) NA NA
DBSCAN-SWA_113 1495596 : 1495941 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_114 1500474 : 1501008 1 Micromonas_pusilla_virus(100.0%) NA NA
DBSCAN-SWA_115 1512781 : 1519514 8 Staphylococcus_phage(66.67%) NA NA
DBSCAN-SWA_116 1526270 : 1530368 4 Clostridium_phage(50.0%) NA NA
DBSCAN-SWA_117 1544974 : 1545631 1 Paenibacillus_phage(100.0%) NA NA
DBSCAN-SWA_118 1560172 : 1560925 1 Mollivirus(100.0%) NA NA
DBSCAN-SWA_119 1572073 : 1573930 1 Catovirus(100.0%) NA NA
DBSCAN-SWA_120 1576986 : 1580298 3 Moraxella_phage(33.33%) integrase attL 1568145:1568159|attR 1580939:1580953
DBSCAN-SWA_121 1583757 : 1585299 1 Micromonas_pusilla_virus(100.0%) NA NA
DBSCAN-SWA_122 1595857 : 1601770 6 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_123 1609349 : 1613781 5 Mycobacterium_phage(50.0%) NA NA
DBSCAN-SWA_124 1620112 : 1621348 1 unidentified_phage(100.0%) tRNA NA
DBSCAN-SWA_125 1625598 : 1632224 4 Streptococcus_phage(33.33%) NA NA
DBSCAN-SWA_126 1637481 : 1638030 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_127 1642452 : 1652664 10 Acinetobacter_phage(33.33%) NA NA
DBSCAN-SWA_128 1657314 : 1658298 2 Pneumococcus_phage(50.0%) NA NA
DBSCAN-SWA_129 1676600 : 1688067 11 Bacillus_phage(57.14%) NA NA
DBSCAN-SWA_130 1696047 : 1700908 6 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_131 1703997 : 1704774 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_132 1709437 : 1710262 1 Grouper_iridovirus(100.0%) NA NA
DBSCAN-SWA_133 1716186 : 1716738 1 Vibrio_phage(100.0%) NA NA
DBSCAN-SWA_134 1740211 : 1742184 3 Bacillus_thuringiensis_phage(50.0%) NA NA
DBSCAN-SWA_135 1757987 : 1760308 2 Gordonia_phage(50.0%) NA NA
DBSCAN-SWA_136 1779527 : 1788298 7 Klosneuvirus(33.33%) NA NA
DBSCAN-SWA_137 1792425 : 1810004 14 Prochlorococcus_phage(25.0%) NA NA
DBSCAN-SWA_138 1813484 : 1818927 3 Bacillus_phage(66.67%) NA NA
DBSCAN-SWA_139 1823055 : 1825930 2 Klosneuvirus(50.0%) NA NA
DBSCAN-SWA_140 1831592 : 1838797 9 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_141 1842261 : 1843191 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_142 1863590 : 1864325 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_143 1869189 : 1871829 1 Klosneuvirus(100.0%) tRNA NA
DBSCAN-SWA_144 1884181 : 1884955 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_145 1889263 : 1896697 5 Moraxella_phage(50.0%) protease NA
DBSCAN-SWA_146 1899838 : 1901575 1 Ostreococcus_lucimarinus_virus(100.0%) NA NA
DBSCAN-SWA_147 1905419 : 1908609 2 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_148 1914469 : 1915312 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_149 1918598 : 1919285 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_150 1922794 : 1923463 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_151 1934760 : 1935384 1 Cassava_brown_streak_virus(100.0%) NA NA
DBSCAN-SWA_152 1942790 : 1943621 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_153 1958265 : 1959468 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_154 1963681 : 1966562 3 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_155 1978309 : 1979720 3 Faustovirus(50.0%) NA NA
DBSCAN-SWA_156 1984857 : 1985409 1 Clostridioides_phage(100.0%) NA NA
DBSCAN-SWA_157 1988527 : 1993650 3 Escherichia_phage(50.0%) NA NA
DBSCAN-SWA_158 2010405 : 2011791 1 Aichi_virus(100.0%) NA NA
DBSCAN-SWA_159 2017331 : 2018765 1 Tupanvirus(100.0%) tRNA NA
DBSCAN-SWA_160 2024647 : 2026846 5 Tupanvirus(66.67%) NA NA
DBSCAN-SWA_161 2039097 : 2040111 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_162 2050084 : 2054822 5 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_163 2062011 : 2068672 4 Bacillus_phage(25.0%) NA NA
DBSCAN-SWA_164 2072015 : 2073017 1 Tupanvirus(100.0%) tRNA NA
DBSCAN-SWA_165 2082435 : 2087338 4 Micromonas_sp._RCC1109_virus(50.0%) NA NA
DBSCAN-SWA_166 2090781 : 2100537 9 Agrobacterium_phage(25.0%) tRNA NA
DBSCAN-SWA_167 2103858 : 2107344 2 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_168 2112992 : 2119990 7 Bacillus_virus(40.0%) NA NA
DBSCAN-SWA_169 2127223 : 2128978 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_170 2135286 : 2135781 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_171 2179727 : 2181089 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_172 2185581 : 2191438 5 Streptococcus_phage(33.33%) NA NA
DBSCAN-SWA_173 2199189 : 2200140 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_174 2206782 : 2209652 3 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_175 2224258 : 2228767 5 Bacillus_phage(66.67%) integrase attL 2221607:2221620|attR 2229153:2229166
DBSCAN-SWA_176 2244326 : 2248651 4 Tupanvirus(50.0%) NA NA
DBSCAN-SWA_177 2253211 : 2263850 11 Bacillus_phage(40.0%) tRNA NA
DBSCAN-SWA_178 2273533 : 2275669 1 Powai_lake_megavirus(100.0%) NA NA
DBSCAN-SWA_179 2295660 : 2306235 8 Pandoravirus(33.33%) NA NA
DBSCAN-SWA_180 2313074 : 2314801 3 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_181 2324075 : 2326558 3 Pandoravirus(33.33%) NA NA
DBSCAN-SWA_182 2331860 : 2332795 2 Deep-sea_thermophilic_phage(50.0%) NA NA
DBSCAN-SWA_183 2336166 : 2384619 56 Caldibacillus_phage(34.62%) tail,capsid,protease,head,portal,coat NA
DBSCAN-SWA_184 2388723 : 2393103 4 uncultured_Caudovirales_phage(66.67%) NA NA
DBSCAN-SWA_185 2400642 : 2402590 2 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_186 2412536 : 2415729 3 Clostridium_phage(50.0%) NA NA
DBSCAN-SWA_187 2426471 : 2426681 1 Lactococcus_phage(100.0%) NA NA
DBSCAN-SWA_188 2430442 : 2431933 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_189 2436447 : 2441195 5 environmental_Halophage(50.0%) NA NA
DBSCAN-SWA_190 2445295 : 2451688 7 Streptococcus_phage(25.0%) integrase attL 2442637:2442652|attR 2446267:2446282
DBSCAN-SWA_191 2468370 : 2469831 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_192 2479724 : 2480477 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_193 2489158 : 2498856 9 Flavobacterium_phage(33.33%) NA NA
DBSCAN-SWA_194 2507183 : 2510437 3 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_195 2515365 : 2526924 11 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_196 2534458 : 2537336 2 Moraxella_phage(50.0%) NA NA
DBSCAN-SWA_197 2542188 : 2543346 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_198 2560505 : 2571133 7 Aeromonas_phage(25.0%) NA NA
DBSCAN-SWA_199 2574327 : 2584766 11 uncultured_virus(40.0%) tRNA NA
DBSCAN-SWA_200 2595925 : 2598074 2 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_201 2601095 : 2606008 7 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_202 2617157 : 2617865 1 Bacillus_phage(100.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage