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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP040506 Hungatella hathewayi WAL-18680 chromosome, complete genome 7 crisprs DinG,DEDDh,cas3,cas2,cas1,cas5,cas7b,cas8b1,cas6,RT,csa3,WYL 0 9 6 0

Results visualization

1. NZ_CP040506
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040506_1 687022-687117 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040506_2 3206890-3208870 TypeI-B NA
30 spacers
cas2,cas1,cas3,cas5,cas7b,cas8b1,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040506_3 3219152-3219837 TypeI-B NA
10 spacers
cas6,cas8b1,cas7b,cas5,cas3,cas1,cas2

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040506_4 3549713-3549844 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040506_5 4011840-4011944 Orphan NA
1 spacers
WYL

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040506_6 4525984-4526121 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040506_7 5395628-5395861 Orphan NA
3 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP040506_6 6.2|4526038|30|NZ_CP040506|CRT 4526038-4526067 30 NC_029005 Streptomyces phage phiSAJS1, complete genome 25000-25029 6 0.8
NZ_CP040506_2 2.27|3208612|34|NZ_CP040506|CRISPRCasFinder,CRT 3208612-3208645 34 NZ_CP014068 Enterococcus gallinarum strain FDAARGOS_163 plasmid unnamed, complete sequence 15850-15883 7 0.794
NZ_CP040506_2 2.57|3208617|34|NZ_CP040506|PILER-CR 3208617-3208650 34 NZ_CP014068 Enterococcus gallinarum strain FDAARGOS_163 plasmid unnamed, complete sequence 15850-15883 7 0.794
NZ_CP040506_6 6.2|4526038|30|NZ_CP040506|CRT 4526038-4526067 30 NZ_CP019297 Vibrio campbellii strain LMB29 plasmid pLMB99, complete sequence 52948-52977 7 0.767
NZ_CP040506_6 6.2|4526038|30|NZ_CP040506|CRT 4526038-4526067 30 NZ_CP020081 Vibrio campbellii strain 20130629003S01 plasmid pVCGX4, complete sequence 18078-18107 7 0.767
NZ_CP040506_6 6.2|4526038|30|NZ_CP040506|CRT 4526038-4526067 30 MW084976 Bacillus phage Kirov, complete genome 50075-50104 7 0.767
NZ_CP040506_6 6.2|4526038|30|NZ_CP040506|CRT 4526038-4526067 30 NZ_CP022991 Paraburkholderia aromaticivorans strain BN5 plasmid pBN1, complete sequence 283095-283124 8 0.733
NZ_CP040506_6 6.2|4526038|30|NZ_CP040506|CRT 4526038-4526067 30 MN693358 Marine virus AFVG_25M395, complete genome 15246-15275 8 0.733
NZ_CP040506_7 7.2|5395727|35|NZ_CP040506|CRISPRCasFinder 5395727-5395761 35 CP046512 Bacillus cereus strain JHU plasmid p1, complete sequence 48925-48959 8 0.771
NZ_CP040506_2 2.7|3207307|34|NZ_CP040506|CRISPRCasFinder,CRT 3207307-3207340 34 NC_013940 Deferribacter desulfuricans SSM1 megaplasmid pDF308, complete sequence 256871-256904 9 0.735
NZ_CP040506_2 2.37|3207309|34|NZ_CP040506|PILER-CR 3207309-3207342 34 NC_013940 Deferribacter desulfuricans SSM1 megaplasmid pDF308, complete sequence 256871-256904 9 0.735
NZ_CP040506_3 3.17|3219575|34|NZ_CP040506|CRISPRCasFinder 3219575-3219608 34 MN033296 Leviviridae sp. isolate H4_Rhizo_Litter_20_scaffold_389 RNA-dependent RNA polymerase (H4RhizoLitter20389_000001), hypothetical protein (H4RhizoLitter20389_000002), and hypothetical protein (H4RhizoLitter20389_000003) genes, complete cds 3462-3495 9 0.735
NZ_CP040506_2 2.7|3207307|34|NZ_CP040506|CRISPRCasFinder,CRT 3207307-3207340 34 NZ_CP014607 Endosymbiont 'TC1' of Trimyema compressum strain not applicalbe isolate TC1 plasmid pTC1, complete sequence 19518-19551 10 0.706
NZ_CP040506_2 2.30|3208807|34|NZ_CP040506|CRISPRCasFinder,CRT 3208807-3208840 34 MN284895 Mycobacterium phage Marshawn, complete genome 35327-35360 10 0.706
NZ_CP040506_2 2.37|3207309|34|NZ_CP040506|PILER-CR 3207309-3207342 34 NZ_CP014607 Endosymbiont 'TC1' of Trimyema compressum strain not applicalbe isolate TC1 plasmid pTC1, complete sequence 19518-19551 10 0.706
NZ_CP040506_2 2.60|3208812|34|NZ_CP040506|PILER-CR 3208812-3208845 34 MN284895 Mycobacterium phage Marshawn, complete genome 35327-35360 10 0.706
NZ_CP040506_2 2.7|3207307|34|NZ_CP040506|CRISPRCasFinder,CRT 3207307-3207340 34 NZ_LN906635 Lactobacillus reuteri plasmid p53608_1, complete genome, strain ATCC 53608 131546-131579 11 0.676
NZ_CP040506_2 2.37|3207309|34|NZ_CP040506|PILER-CR 3207309-3207342 34 NZ_LN906635 Lactobacillus reuteri plasmid p53608_1, complete genome, strain ATCC 53608 131546-131579 11 0.676

1. spacer 6.2|4526038|30|NZ_CP040506|CRT matches to NC_029005 (Streptomyces phage phiSAJS1, complete genome) position: , mismatch: 6, identity: 0.8

gcagaaacaacagccagaacagcggccaga	CRISPR spacer
gccggagttacagccagaacatcggccaga	Protospacer
** *.*.. ************ ********

2. spacer 2.27|3208612|34|NZ_CP040506|CRISPRCasFinder,CRT matches to NZ_CP014068 (Enterococcus gallinarum strain FDAARGOS_163 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.794

tgtataccggtgtcaatcaggaaggacagaccta	CRISPR spacer
tgtatgccggtgtcaatcaggaagaacgaacaac	Protospacer
*****.******************.**..**   

3. spacer 2.57|3208617|34|NZ_CP040506|PILER-CR matches to NZ_CP014068 (Enterococcus gallinarum strain FDAARGOS_163 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.794

tgtataccggtgtcaatcaggaaggacagaccta	CRISPR spacer
tgtatgccggtgtcaatcaggaagaacgaacaac	Protospacer
*****.******************.**..**   

4. spacer 6.2|4526038|30|NZ_CP040506|CRT matches to NZ_CP019297 (Vibrio campbellii strain LMB29 plasmid pLMB99, complete sequence) position: , mismatch: 7, identity: 0.767

gcagaaacaacagccagaacagcggccaga	CRISPR spacer
gcagaaacagcagctagaacagcgatagca	Protospacer
*********.****.*********.. . *

5. spacer 6.2|4526038|30|NZ_CP040506|CRT matches to NZ_CP020081 (Vibrio campbellii strain 20130629003S01 plasmid pVCGX4, complete sequence) position: , mismatch: 7, identity: 0.767

gcagaaacaacagccagaacagcggccaga	CRISPR spacer
gcagaaacagcagctagaacagcgatagca	Protospacer
*********.****.*********.. . *

6. spacer 6.2|4526038|30|NZ_CP040506|CRT matches to MW084976 (Bacillus phage Kirov, complete genome) position: , mismatch: 7, identity: 0.767

gcagaaacaacagccagaacagcggccaga	CRISPR spacer
gcagaaacaacagacggaacagcttataca	Protospacer
************* *.*******   .* *

7. spacer 6.2|4526038|30|NZ_CP040506|CRT matches to NZ_CP022991 (Paraburkholderia aromaticivorans strain BN5 plasmid pBN1, complete sequence) position: , mismatch: 8, identity: 0.733

gcagaaacaacagccagaacagcggccaga	CRISPR spacer
tcacgaacatcagccagaacagcggcgtct	Protospacer
 ** .**** ****************    

8. spacer 6.2|4526038|30|NZ_CP040506|CRT matches to MN693358 (Marine virus AFVG_25M395, complete genome) position: , mismatch: 8, identity: 0.733

gcagaaacaacagccagaacagcggccaga	CRISPR spacer
aatgatacaacagccagaacaacggcgggt	Protospacer
.  ** ***************.**** .* 

9. spacer 7.2|5395727|35|NZ_CP040506|CRISPRCasFinder matches to CP046512 (Bacillus cereus strain JHU plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.771

tcagtttttaataattctttca-----ttccgtcctgaaa	CRISPR spacer
tcaattttcaataattctttcattcatttccctcc-----	Protospacer
***.****.*************     **** ***     

10. spacer 2.7|3207307|34|NZ_CP040506|CRISPRCasFinder,CRT matches to NC_013940 (Deferribacter desulfuricans SSM1 megaplasmid pDF308, complete sequence) position: , mismatch: 9, identity: 0.735

aggatatgaaatacaaaaataaagaggggtatta	CRISPR spacer
tagaaatgaaatacaaaaagaaagaggcaccttg	Protospacer
 .** ************** ******* .. **.

11. spacer 2.37|3207309|34|NZ_CP040506|PILER-CR matches to NC_013940 (Deferribacter desulfuricans SSM1 megaplasmid pDF308, complete sequence) position: , mismatch: 9, identity: 0.735

aggatatgaaatacaaaaataaagaggggtatta	CRISPR spacer
tagaaatgaaatacaaaaagaaagaggcaccttg	Protospacer
 .** ************** ******* .. **.

12. spacer 3.17|3219575|34|NZ_CP040506|CRISPRCasFinder matches to MN033296 (Leviviridae sp. isolate H4_Rhizo_Litter_20_scaffold_389 RNA-dependent RNA polymerase (H4RhizoLitter20389_000001), hypothetical protein (H4RhizoLitter20389_000002), and hypothetical protein (H4RhizoLitter20389_000003) genes, complete cds) position: , mismatch: 9, identity: 0.735

ggattgattgttctggtggtgcttttagcatttc	CRISPR spacer
gcccttatcgttctggtggtgctttcagcacgac	Protospacer
*  .* **.****************.****.  *

13. spacer 2.7|3207307|34|NZ_CP040506|CRISPRCasFinder,CRT matches to NZ_CP014607 (Endosymbiont 'TC1' of Trimyema compressum strain not applicalbe isolate TC1 plasmid pTC1, complete sequence) position: , mismatch: 10, identity: 0.706

aggatatgaaatacaaaaataaagaggggtatta	CRISPR spacer
ataatatgaaaaacaaaaataaacaggtagctag	Protospacer
* .******** *********** *** .  * .

14. spacer 2.30|3208807|34|NZ_CP040506|CRISPRCasFinder,CRT matches to MN284895 (Mycobacterium phage Marshawn, complete genome) position: , mismatch: 10, identity: 0.706

gatattatggcgacaaacagggagctgccggaca	CRISPR spacer
gcctggatggcgacaaacagggtgatgccgcgct	Protospacer
* .   **************** * ***** .* 

15. spacer 2.37|3207309|34|NZ_CP040506|PILER-CR matches to NZ_CP014607 (Endosymbiont 'TC1' of Trimyema compressum strain not applicalbe isolate TC1 plasmid pTC1, complete sequence) position: , mismatch: 10, identity: 0.706

aggatatgaaatacaaaaataaagaggggtatta	CRISPR spacer
ataatatgaaaaacaaaaataaacaggtagctag	Protospacer
* .******** *********** *** .  * .

16. spacer 2.60|3208812|34|NZ_CP040506|PILER-CR matches to MN284895 (Mycobacterium phage Marshawn, complete genome) position: , mismatch: 10, identity: 0.706

gatattatggcgacaaacagggagctgccggaca	CRISPR spacer
gcctggatggcgacaaacagggtgatgccgcgct	Protospacer
* .   **************** * ***** .* 

17. spacer 2.7|3207307|34|NZ_CP040506|CRISPRCasFinder,CRT matches to NZ_LN906635 (Lactobacillus reuteri plasmid p53608_1, complete genome, strain ATCC 53608) position: , mismatch: 11, identity: 0.676

aggatatgaaatacaaaaataaagaggggtatta	CRISPR spacer
ttctttccttatataaaaataaaaaggggtatta	Protospacer
    * .   ***.*********.**********

18. spacer 2.37|3207309|34|NZ_CP040506|PILER-CR matches to NZ_LN906635 (Lactobacillus reuteri plasmid p53608_1, complete genome, strain ATCC 53608) position: , mismatch: 11, identity: 0.676

aggatatgaaatacaaaaataaagaggggtatta	CRISPR spacer
ttctttccttatataaaaataaaaaggggtatta	Protospacer
    * .   ***.*********.**********

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1137171 : 1161820 24 Arthrobacter_phage(27.27%) portal,terminase,tail,head,protease NA
DBSCAN-SWA_2 1166677 : 1185253 25 Faecalibacterium_phage(40.0%) NA NA
DBSCAN-SWA_3 1548181 : 1554082 8 Enterobacteria_phage(42.86%) NA NA
DBSCAN-SWA_4 1982462 : 1993200 7 Bacillus_phage(66.67%) NA NA
DBSCAN-SWA_5 3861366 : 3868349 7 Acinetobacter_phage(50.0%) NA NA
DBSCAN-SWA_6 4329922 : 4334207 6 Synechococcus_phage(50.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage