CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP040527	Enterobacter ludwigii strain JP9 isolate Tobacco rhizosphere soil chromosome, complete genome	1 crisprs	DEDDh,csa3,WYL,DinG,cas3	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP040527_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040527_1

3307154-3307434

Orphan

Consensus_repeat	Method
GGGCGATTAGCTCAGTTGGTAGAGCATCTCCTTTACACGGAGGGGGTCGGCGGTTCGAG	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP040527_1

>merge|NZ_CP040527|1|3307154-3307434|PILER-CR
GGGTGATTAGCTCAGTTGGTAGAGCATCTCCTTTACACGGAGGGGGTCGGCGGTTCGAGCCCGTCATCACCCACCATCTACTTAAGTAGACTCGCAGTGTAGATAAGTATTGAGATTGGGCGATTAGCTCAGTTGGTAGAGCATCTCCTTTACACGGAGGGGGTCGGCGGTTCGAGTCCGTCATCGCCCACCATTCTCATCTTATCGCAGCAGTTCCGAAATGGGCGATTAGCTCAGTTGGTAGAGCATCTCCTTTACACGGAGGGGGTCGGCGGTTCGAG

>NZ_CP040527|1|1|3307154-3307434|PILER-CR
GGGTGATTAGCTCAGTTGGTAGAGCATCTCCTTTACACGGAGGGGGTCGGCGGTTCGAG	CCCGTCATCACCCACCATCTACTTAAGTAGACTCGCAGTGTAGATAAGTATTGAGATT
GGGCGATTAGCTCAGTTGGTAGAGCATCTCCTTTACACGGAGGGGGTCGGCGGTTCGAG	TCCGTCATCGCCCACCATTCTCATCTTATCGCAGCAGTTCCGAAAT
GGGCGATTAGCTCAGTTGGTAGAGCATCTCCTTTACACGGAGGGGGTCGGCGGTTCGAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040527.1\|WP_020883096.1\|3307735_3308623_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182183
NZ_CP040527.1\|WP_047743021.1\|3309999_3310824_-\|xanthosine-phosphorylase	unknown	unknown	gnl\|CDD\|236183
NZ_CP040527.1\|WP_138014066.1\|3316914_3317676_+\|sulfate-transporter-CysZ	unknown	unknown	gnl\|CDD\|179898
NZ_CP040527.1\|WP_014171067.1\|3298634_3298982_+\|DUF2502-domain-containing-protein	unknown	unknown	gnl\|CDD\|371199
NZ_CP040527.1\|WP_020883097.1\|3299043_3300282_-\|Nramp-family-divalent-metal-transporter	unknown	unknown	gnl\|CDD\|234815
NZ_CP040527.1\|WP_138278300.1\|3308691_3309948_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|129967
NZ_CP040527.1\|WP_025203500.1\|3313612_3315628_-\|NAD-dependent-DNA-ligase-LigA	unknown	unknown	gnl\|CDD\|236137
NZ_CP040527.1\|WP_014171074.1\|3305479_3306895_-\|glutamate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234953
NZ_CP040527.1\|WP_138014065.1\|3311378_3312314_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176131
NZ_CP040527.1\|WP_138014063.1\|3295664_3297323_-\|indolepyruvate-decarboxylase	unknown	unknown	gnl\|CDD\|274559
NZ_CP040527.1\|WP_014171069.1\|3300632_3301820_+\|NupC/NupG-family-nucleoside-CNT-transporter	unknown	unknown	gnl\|CDD\|224883
NZ_CP040527.1\|WP_025203504.1\|3301864_3304054_-\|sensor-domain-containing-phosphodiesterase	unknown	unknown	gnl\|CDD\|238923
NZ_CP040527.1\|WP_020883089.1\|3315697_3316684_-\|cell-division-protein-ZipA	unknown	unknown	gnl\|CDD\|235124
NZ_CP040527.1\|WP_014171073.1\|3305042_3305435_+\|putative-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|369180
NZ_CP040527.1\|WP_138014064.1\|3311031_3311382_+\|FlxA-like-family-protein	unknown	unknown	gnl\|CDD\|379537
NZ_CP040527.1\|WP_138014062.1\|3294428_3295664_+\|ion-channel-protein	unknown	unknown	gnl\|CDD\|235148
NZ_CP040527.1\|WP_014171072.1\|3304678_3305041_+\|putative-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|369180
NZ_CP040527.1\|WP_014171081.1\|3312403_3313399_+\|bile-acid:sodium-symporter	unknown	unknown	gnl\|CDD\|372642
NZ_CP040527.1\|WP_014171066.1\|3297508_3298507_+\|L-glyceraldehyde-3-phosphate-reductase	unknown	unknown	gnl\|CDD\|381377
NZ_CP040527.1\|WP_014171082.1\|3313395_3313611_-\|DUF3820-family-protein	unknown	unknown	gnl\|CDD\|226061

Protein	Function_ID	Function_description	E-value
NZ_CP040527.1\|WP_020883096.1\|3307735_3308623_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|182183	PRK09986, PRK09986, LysR family transcriptional regulator.	0
NZ_CP040527.1\|WP_047743021.1\|3309999_3310824_-\|xanthosine-phosphorylase	gnl\|CDD\|236183	PRK08202, PRK08202, purine nucleoside phosphorylase; Provisional.	1.80195e-153
NZ_CP040527.1\|WP_138014066.1\|3316914_3317676_+\|sulfate-transporter-CysZ	gnl\|CDD\|179898	PRK04949, PRK04949, putative sulfate transport protein CysZ; Validated.	1.42918e-154
NZ_CP040527.1\|WP_014171067.1\|3298634_3298982_+\|DUF2502-domain-containing-protein	gnl\|CDD\|371199	pfam10697, DUF2502, Protein of unknown function (DUF2502). Members of this family are all Gammaproteobacteria. The function is not known.	1.01307e-10
NZ_CP040527.1\|WP_020883097.1\|3299043_3300282_-\|Nramp-family-divalent-metal-transporter	gnl\|CDD\|234815	PRK00701, PRK00701, divalent metal cation transporter MntH.	0
NZ_CP040527.1\|WP_138278300.1\|3308691_3309948_-\|MFS-transporter	gnl\|CDD\|129967	TIGR00889, Putative_nucleoside_transporter_YegT, nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. [Transport and binding proteins, Nucleosides, purines and pyrimidines].	0
NZ_CP040527.1\|WP_025203500.1\|3313612_3315628_-\|NAD-dependent-DNA-ligase-LigA	gnl\|CDD\|236137	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated.	0
NZ_CP040527.1\|WP_014171074.1\|3305479_3306895_-\|glutamate--tRNA-ligase	gnl\|CDD\|234953	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.	0
NZ_CP040527.1\|WP_138014065.1\|3311378_3312314_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176131	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to a name a few. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.2232e-67
NZ_CP040527.1\|WP_138014063.1\|3295664_3297323_-\|indolepyruvate-decarboxylase	gnl\|CDD\|274559	TIGR03393, Indole-3-pyruvate_decarboxylase, indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria. [Central intermediary metabolism, Other].	0
NZ_CP040527.1\|WP_014171069.1\|3300632_3301820_+\|NupC/NupG-family-nucleoside-CNT-transporter	gnl\|CDD\|224883	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism].	8.30813e-160
NZ_CP040527.1\|WP_025203504.1\|3301864_3304054_-\|sensor-domain-containing-phosphodiesterase	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	2.12189e-77
NZ_CP040527.1\|WP_020883089.1\|3315697_3316684_-\|cell-division-protein-ZipA	gnl\|CDD\|235124	PRK03427, PRK03427, cell division protein ZipA; Provisional.	0
NZ_CP040527.1\|WP_014171073.1\|3305042_3305435_+\|putative-DNA-binding-transcriptional-regulator	gnl\|CDD\|369180	pfam07037, DUF1323, Putative transcription regulator (DUF1323). This family consists of several hypothetical Enterobacterial proteins of around 120 residues in length. This family appears to have an HTH domain and is therefore likely to act as a transcriptional regulator.	4.55578e-45
NZ_CP040527.1\|WP_138014064.1\|3311031_3311382_+\|FlxA-like-family-protein	gnl\|CDD\|379537	pfam14282, FlxA, FlxA-like protein. This family includes FlxA from E. coli. The expression of FlxA is regulated by the FliA sigma factor, a transcription factor specific for class 3 flagellar operons. However FlxA is not required for flagellar function or formation.	0.00133646
NZ_CP040527.1\|WP_138014062.1\|3294428_3295664_+\|ion-channel-protein	gnl\|CDD\|235148	PRK03655, PRK03655, putative ion channel protein; Provisional.	0
NZ_CP040527.1\|WP_014171072.1\|3304678_3305041_+\|putative-DNA-binding-transcriptional-regulator	gnl\|CDD\|369180	pfam07037, DUF1323, Putative transcription regulator (DUF1323). This family consists of several hypothetical Enterobacterial proteins of around 120 residues in length. This family appears to have an HTH domain and is therefore likely to act as a transcriptional regulator.	3.42164e-51
NZ_CP040527.1\|WP_014171081.1\|3312403_3313399_+\|bile-acid:sodium-symporter	gnl\|CDD\|372642	pfam13593, SBF_like, SBF-like CPA transporter family (DUF4137). These family members are 7TM putative membrane transporter proteins. The family is similar to the SBF family of bile-acid symporters, pfam01758.	8.5998e-124
NZ_CP040527.1\|WP_014171066.1\|3297508_3298507_+\|L-glyceraldehyde-3-phosphate-reductase	gnl\|CDD\|381377	cd19151, AKR_AKR14A2, Salmonella enterica aldo-keto reductase (AKR) and similar protein. Salmonella enterica AKR is a founding member of aldo-keto reductase family 14 member A2 (AKR14A2).	0
NZ_CP040527.1\|WP_014171082.1\|3313395_3313611_-\|DUF3820-family-protein	gnl\|CDD\|226061	COG3530, COG3530, Uncharacterized protein conserved in bacteria [Function unknown].	7.26993e-33

>NZ_CP040527.1|WP_014171074.1|3305479_3306895_-|glutamate--tRNA-ligase
MKIKTRFAPSPTGYLHVGGARTALYSWLFARHNKGEFVLRIEDTDLERSTPEAIEAIMDGMNWLNLEWDEGPYFQTKRFDRYNAVIDEMLVAGTAYKCYCSKERLDALREDQMAKGEKPRYDGRCRHDHSEHAADEPCVVRFANPQDGSVIFDDQIRGPIEFSNQELDDLIIRRTDGSPTYNFCVVVDDWDMEITHVIRGEDHINNTPRQINILKALNAPVPVYAHVSMINGDDGKKLSKRHGAVSVMQYRDDGYLPEALLNYLVRLGWSSGDQEIFSREEMINLFSLGAVSKSASAFNTDKLLWLNHHYINTMQPEYVATYLQWHIEQANIDTRTGPELAELVKLLGERCKTLKEIAESCRYFYEEFDEFDADAAKKHLRPVARQPLEVVRDKLAAMTDWTAENVHHAIQATADELEVGMGKVGMPLRVAVTGAGQSPALDVTVHAIGKSRSVARINKALDFITERENQQ
>NZ_CP040527.1|WP_014171073.1|3305042_3305435_+|putative-DNA-binding-transcriptional-regulator
MKRFRSKMTTEELAENLGVARQTVNRWIRQQGWKTEGVNGVKGGRARLIHIDARVKEHIMSLPAVRNRQAVYHLAEVTSLYSDPSSTLRPGIIETLENMTHLEQERLDALLKREGIRGFLARLGIAEFNA
>NZ_CP040527.1|WP_014171072.1|3304678_3305041_+|putative-DNA-binding-transcriptional-regulator
MIKERMTPEELALLTGYSRQTINKWVRKEGWITSPKPGVQGGKARLVHVNEKVREFIRSARRASETSEIPESASHDGSLHSLLLTLANEMTPEEQRQMTSLLLREGITGLLQRLGIRDQN
>NZ_CP040527.1|WP_025203504.1|3301864_3304054_-|sensor-domain-containing-phosphodiesterase
MNRKTYNNVKIFITALALCLVAVPFSRYISPRAVVNGHDVYLAWLPLSVMLAVILVFGRRAVIPVLLSFTITNIFSIDLAPLQYSVLLFCQTFSVFAGCGILRIILGKRWRYCVPNKHIGLRIFWLGFMVPIGIKVSMYLAGYLFHFPVTISTFFGEGTAIYNVVDIQSLICAALIFTMMFYYPLRMIINPRYAITFWRRSVKPVFFQKKSLYILVWLMLLIVILAILCAPFESPIIAGYLMPVIFILFTLGISRLSYALISLFWAASALLLLTYNYNFLNGVESGHSLSFILSVLISFAICLLYMSRIYQRSEWLKQDWQDRALTDPLTGLPNIRALEDFLQDHPDAKVCCLRMDNLEFLSRHYGILMRVHCKRMVTTSLQPFLQKDERLFQLPGSELVLVLLGPGTAERLQHMVDQLNSRKIVWNNTGLDIEFGASWGMVENGEKLHHTLGQLSWLAEQSCGAHNVLALTNSLEVASGQTTERVLMLARIKHALDAGQFHLYAQPIQKADGSGYYEILTRMESEGEIITPDRFIPLIAQFNLSHRFDMCVMEKLLVWLRDHPATHAGVRFSVNLMPLTLMQKEVAIEICSLFERYGVAPQAVVIEITEEQAFSNSGSSIKNIQQLRDCGFRIAIDDFGTGYANYERLRRLQADIIKIDGCFVKDICTDDMDAMIVQSICNLAKTKSLSVVAEYVETPEQREKLLHFGVDYLQGYLIGKPKPLNELRT
>NZ_CP040527.1|WP_014171069.1|3300632_3301820_+|NupC/NupG-family-nucleoside-CNT-transporter
MDRVLHFVLALVVVTALALLVSHDRKKIRIRFVVQLLVIEVLLAWFFLNSNVGLGFVKGFSEMFEKLLGFANEGTNFVFGKMNDEGLAFFFLKVLCPIVFISALIGILQHIRVLPVVIRAIGTVLSKVNGMGKLESFNAVSSLILGQSENFIAYKDILGKMSRNRMYTMAATAMSTVSMSIVGAYMTMLEPKYVVAALVLNMFSTFIVLSLINPYRVDEGEENLQMANLHEGQSFFEMLGEYILAGFKVAIIVAAMLIGFIALISALNALFAAVLGISFQGILGYIFYPVAWVMGVPAHEALQVGSIMATKLVSNEFVAMMDLQKIASTLSPRAEGILSVFLVSFANFSSIGIIAGAIKGLNEEQGNVVSRFGLKLVYGSTLVSVLSASIAALVL
>NZ_CP040527.1|WP_020883097.1|3299043_3300282_-|Nramp-family-divalent-metal-transporter
MTNSRVEGSSGRAARKLRFALMGPAFIAAIGYIDPGNFATNIQAGASFGYKLLWVVVWANLMAMLIQMLSAKLGIATGKNLAEQIRDHYPRPAVWLYWVQAEIIAMATDLAEFIGAAIGFKLILGVSLLQGAVLTGIATFLILMLQRRGQKPLEKVIGGLLLFVAAAYIVELIFSQPNLAQLSKGMIIPSLPTSEAVFLAAGVLGATIMPHVIYLHSSLTQHLHGGTRKERYSATKWDVAIAMTIAGFVNLAMMATAAAAFHFNGHTGIADLDQAYLTLEPLLSHAAATIFGLSLVAAGLSSTVVGTLAGQVVMQGFVRFHIPLWVRRSVTMLPSFVVILMGLDPTRILVMSQVLLSFGIALALVPLLIFTSDKSLMGELVNSTLVKRTGWVIVAVVVSLNLWLLVGTALGL
>NZ_CP040527.1|WP_014171067.1|3298634_3298982_+|DUF2502-domain-containing-protein
MFRSLILAAVLLASAPLIATAGEITLLPSVKLQIGDRDDYGRYWDGGYWRDRDYWNRHYEWRGDRWRRHDNGLHRGWYKNNAYERGYREGWNDRDDRRGGWGHGGRGHGGHGHHH
>NZ_CP040527.1|WP_014171066.1|3297508_3298507_+|L-glyceraldehyde-3-phosphate-reductase
MSYQPDKNRYQTMQYRRCGQSGLRLPAISLGLWHNFGDATLVENSRQLLQRAFDLGITHFDLANNYGPPPGSAERNFGRILQEDFLPWRDELIISTKAGYTMWDGPYGDWGSRKYLVASLDQSLKRMGLEYVDIFYHHRPDPQTPLLETMKALDHVVRQGKALYVGLSNYPAEQARKAIDILNDLGTPCLIHQPKYSMFERAPEEGLLDVLQEKGVGCIPFSPLAGGQLTNRYLNGIPADSRAASGSKFLNPDQITEEKLEKVRQLNALAENRGQKLSQMALAWILRHESVTSVLIGASKTAQIDDAVAMLENRHFSAEELAIIDGILNSSK
>NZ_CP040527.1|WP_138014063.1|3295664_3297323_-|indolepyruvate-decarboxylase
MRTPYCVADYLLDRLTDCGADHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNASYAADGYARCKGFAALLTTFGVGELSAMNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFRHFYHMSEPITVAQAVLTEQNACYEIDRVLTTMLRERRPGYLMLPADVAKKAATPPVNALTHKQAHADSACLKAFRDAAENKLAMSKRTALLADFLVLRHGLKHALQKWVKEVPMAHATMLMGKGIFDERQAGFYGTYSGSASTGAVKEAIEGADTVLCVGTRFTDTLTAGFTHQLTPAQTIEVQPHAARVGDVWFTGIPMNQSIETLVELCKQHVHAGLMSSSSGAIPFPQPDGSLTQENFWRTLQTFIRPGDIILADQGTSAFGAIDLRLPADVNFIVQPLWGSIGYTLAAAFGAQTACPNRRVIVLTGDGAAQLTIQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYNDIALWNWTHIPQALSLDPQSECWRVSEAEQLADVLEKVAHHERLSLIEVMLPKADIPPLLGALTKALEARNNA
>NZ_CP040527.1|WP_138014062.1|3294428_3295664_+|ion-channel-protein
MLHPRARTMLLLAIPALIIGVASSLVLIVVMKVASVLQAMLWTALPAQLGVSVDSPGWIMLMLTLTGVAVGLVIRFSPGHAGPDPALEPLIGAPVPPSALPGLIIALILGLAGGVSLGPEHPIMAVNIGMAVFLGSRILPRVGALDWTILASAGTIGALFGTPVAAALIFSQTLTSNNDVPLWDKLFAPLMAAAAGALTTSLFFHPHFSLSLPHYGQMHIADIFSGAIVVAIAIALGMIAVWCLPRLHRLMHQLKHPVLILGAGGLMLGVLGAIGGTVTLFKGLDEMQQLAFSQVFSVSDYLLFALVKLAALVVAAACGFRGGRIFPAVFIGVALGLMLHEHVDAVPAAITVSCSILGLVLVVTRDAWLSLFMAAVVVPDSTLFPLLCIVMLPAWLLLAGKPMMMVWRNDK
>NZ_CP040527.1|WP_020883096.1|3307735_3308623_-|LysR-family-transcriptional-regulator
MERVYRTDLKLLRYFLAVAEELHFGRAAARLNMSQPPLSLHIKELESQLGTLLFIRHSRSVALTHAGKVLMEESRRLLASANQALARVEQIGRGEAGRIALGIVGTAMWSEVRTVMRTFLKEHPNVDVVFREKSPVMQMALLERRELDVGIWRMATEPTAGFTSIRLRDAAFLVALPEDHRLVGESAIALTELQNEYFVTMPSAHSDWSFLQRVCQQAGFSPMIVREADEPQTVLAMISMGMGITLAADSYAQMQWPGVVFRPLQVRIPADLYVVYDEKQATPAIKSLIATLTEE
>NZ_CP040527.1|WP_138278300.1|3308691_3309948_-|MFS-transporter
MNITTRLKMMSFMQYFIWGSWLVTLGAYMINTLGFSGSDVGMVYSSKGLAAIVMPSLVGIIADKWLRADRAYVICHLVCAVALCYAAQVNEPGLMFWVMLVNAMAFMPTIALSNTLSYSCLEQAGLDTVTHFPTVRVYGTVGFIVAMWAISLMGAELTNIQLYIAAAASLVLALYSLTLPAIPVAKNKTSSTLASKLGLNAFVLFKQPRMAVFFLFAMLLGAVLQITNTFGSPFLHDFARNPAYAESFIVKYPSILLSVSQMSEVLFILTIPFFLRRFGIKTVMLMSMVAWMLRFGLFAYGDPSATGVGLLMLSMLVYGCAFDFFNISGSVFVEQEVSADIRASAQGLFMTTVNGIGAYFGSVLSGAAVDYFSVDGVKDWQTIWLVFAAYALVLAVVFYFSFNYLHTSKNSELRTVAH
>NZ_CP040527.1|WP_047743021.1|3309999_3310824_-|xanthosine-phosphorylase
MTLSNNPWFSADIIRAAKPDFTPRVAFILGSGLGALAEQIVDAVVLSYEKLPGFPVSTVHGHAGELVLGHLAGVPVACMKGRGHFYEGRGIAVMTDAIRTFKLLGCELLFSTNAAGSLRPEVEPGSLVALSDHINTLPGTPMVGLNDDRFGDRFFSLANAYDADCRALLQAVASEKGFPLHEGVFVSYPGPNFETAAEIRMMQIIGGDVVGMSVVPEVISARHCGLKVVAVSAITNLAEGLSDVKLSHEQTLAAAELSRQNFIDLICGFLRQLA
>NZ_CP040527.1|WP_138014064.1|3311031_3311382_+|FlxA-like-family-protein
MTTIQATTQPIQTSGGGSRSSGGNDIAAQISRITDKITKLTQQLKEVANGSGSAEEKKKQQELIQVQIKVLQAQLAQLAQLQRQQAEEAQKKQEQSLVNVEGPKNASDNHQIDIYV
>NZ_CP040527.1|WP_138014065.1|3311378_3312314_-|LysR-family-transcriptional-regulator
MNYSLRQLRIFVTVAHARSFSRAGEIIGLSQSAVSHSVKELESQTGVRLLDRTTREVVLTEAGQQLAQRLERLLDELNSTLRDVGRLGQQLSGTVRVAASQTISAHLIPQCIAEGHHRYPDIDFVLHDRPQQWVLESIRQGDVDFGIVIDPGQVSDLECEIVLSEPFLLLCRDDDPLAAQPSVLWQALQGANLVLQDYASGSRPLIDSALVTQGVKATIVQEIGHPATLFPMVEAGIGISVLPALALPLPQGSRLVVKRLTPAIERKLMLVRRKNRSLSGAAQAIWEVVRIQAQRLTEARIRDPLFNSTER
>NZ_CP040527.1|WP_014171081.1|3312403_3313399_+|bile-acid:sodium-symporter
MKLFRILDPFTLTLVVTVLLASFFPARGGFVPFFEGLTTAAIALLFFMHGAKLSREAIIAGGSHWRLHLWVMCSTFILFPVLGVLFAWWAPVNVDPALYTGFLYLCILPATVQSAIAFTSLAGGNVAAAVCSASASSLLGIFVSPLLVGLLMNMHGAEGNLEQVGKICLQLLLPFVLGHLSRPWTGAFVAKHKKWISKTDQSSILLVVYSAFSEAVVNGIWHKVGAGSLLFIVVVSLVLLAIVIGVNVFVARKCGFNKADEITIVFCGSKKSLANGIPMANILFPTSMIGMMVLPLMIFHQIQLMVCAVLARRYKRQTEKQAQEETRAAKA
>NZ_CP040527.1|WP_014171082.1|3313395_3313611_-|DUF3820-family-protein
MEKEQLVEIANTEMPFGKYKGRRLIDLPEDYLLWFARKDGFPAGRLGELMAITLLIKTEGLTQLVQPLKRP
>NZ_CP040527.1|WP_025203500.1|3313612_3315628_-|NAD-dependent-DNA-ligase-LigA
MDSIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEAQHPELITPDSPTQRVGAEPLGAFSQVRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSSDSLTWCCELKLDGLAVSLLYENGVLVRAATRGDGTTGEDITTNVRTIRAIPLKLQGDNIPARLEVRGEVFLPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQFKAWGLPVSNRVQLCDSPEAVLAFYHKVEEDRPTLGFDIDGVVIKVNSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIERLGLRIGDKVVIRRAGDVIPQVVNVVESERPDDTRAIVFPTHCPVCGSDVERVEGEAVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGLDRMGPKSAQNVVNALDAAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEKASIDELQRVPDVGIVVATHVFNFFAEESNREVIGKLLEEGIRWPAPVVVNADEIDSPFAGKTVVLTGSLSQLSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMMRLLGE
>NZ_CP040527.1|WP_020883089.1|3315697_3316684_-|cell-division-protein-ZipA
MMQDLRLILIIVGAIAIIALLVHGFWTSRKERSSMFRDRPLKRMKSSRDDDDSENDIDGSDDDGVGEVRVHRVNTAPGAAHGEHEAPRQPPQHQYQPPYASAQPRQQAPQPGEEPVRQPPQQPVHQQPAAPQPVQQQPVQQPAPQQPAQPVHQPQQPVHVQPAPQPAPAPLVEPEPVVEPEPVVEKPQRKEAVIIMNVAAHHGTHLNGDVLLNSIQQAGFKFGDMNIFHRHLSPDGSGPALFSLANMVNPGTFDPEMTGDFVTPGVTIFMQVPSYGDELQNFKLMLQSAQHIADEVGGVVLDDQRRMMTPQKLREYQDRIREVKEANA
>NZ_CP040527.1|WP_138014066.1|3316914_3317676_+|sulfate-transporter-CysZ
MVSTSSSPPRSGVWYFSQGWKLVSLPGIRRYVILPLLINIILMGGAFWWLFTRLESWIPSLMSHVPHWLQWLNYLLWPVAVISVLLVFGYFFSTIANWIAAPFNGLLAEQLEARLTGATPPDTGMLGIMKDIPRIMKREWQKFAWYLPRAIVLLILYFVPGVGQTVAPVLWFLFSAWMLAIQYCDYPFDNHKVPFKTMRSALRTQKVANMQFGALTSLFTMIPVLNLFIMPVAVCGATAMWVDCYRAKHALWK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1646331 : 1697821

Bacillus_phage(25.0%)

protease,plate

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138013696.1\|1646331_1648092_-\|protease	Lon protease family protein	NA	NA	NA	NA
WP_014169429.1\|1648278_1648731_+	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_020884794.1\|1648800_1649856_-	porin OmpA	NA	NA	NA	NA
WP_078774793.1\|1650210_1650720_-	cell division inhibitor SulA	NA	NA	NA	NA
WP_032677817.1\|1650937_1651564_+	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA
WP_020884791.1\|1651520_1653683_-	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_025204535.1\|1653702_1654149_-	YccF domain-containing protein	NA	NA	NA	NA
WP_138013697.1\|1654272_1656327_+	DNA helicase IV	A7KV33	Bacillus_phage	2.3e-17	27.3
WP_020884788.1\|1656386_1656845_-	methylglyoxal synthase	NA	NA	NA	NA
WP_032679662.1\|1656925_1657588_-	DUF2057 family protein	NA	NA	NA	NA
WP_025204532.1\|1657760_1658177_+	CoA-binding protein	NA	NA	NA	NA
WP_013097248.1\|1658211_1658529_-	heat shock protein HspQ	NA	NA	NA	NA
WP_032677819.1\|1658589_1659780_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA
WP_138013698.1\|1659955_1660513_+	kinase inhibitor	NA	NA	NA	NA
WP_081146620.1\|1660523_1661312_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_020884783.1\|1661323_1661605_+	acylphosphatase	NA	NA	NA	NA
WP_020884782.1\|1661601_1661931_-	sulfurtransferase TusE	NA	NA	NA	NA
WP_014169445.1\|1662019_1662679_-\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	2.9e-46	53.9
WP_068794471.1\|1662948_1664577_+	oligopeptide ABC transporter substrate-binding protein OppA	NA	NA	NA	NA
WP_138013699.1\|1665139_1665409_-	methyltransferase	NA	NA	NA	NA
WP_025204527.1\|1666119_1666620_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_032670568.1\|1666653_1668201_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_138013700.1\|1668214_1669564_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_138013701.1\|1669560_1670250_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_138013702.1\|1670249_1671929_+	OmpA family protein	NA	NA	NA	NA
WP_025204522.1\|1671931_1672423_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_138013703.1\|1672585_1675258_+	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	1.2e-93	32.5
WP_138013704.1\|1675254_1677612_+	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_020884771.1\|1677621_1678161_+	DUF3828 domain-containing protein	NA	NA	NA	NA
WP_020884770.1\|1678243_1678714_+	DUF3828 domain-containing protein	NA	NA	NA	NA
WP_138013705.1\|1681514_1682093_+	hypothetical protein	NA	NA	NA	NA
WP_138013706.1\|1682229_1682718_+	hypothetical protein	NA	NA	NA	NA
WP_063925123.1\|1682720_1682984_+	PAAR domain-containing protein	R9U4D0	Rhizobium_phage	1.2e-06	50.0
WP_050736598.1\|1682986_1684195_+	hypothetical protein	NA	NA	NA	NA
WP_138013707.1\|1684187_1687559_+	type VI secretion protein VasK	NA	NA	NA	NA
WP_047955326.1\|1687959_1689567_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_138013708.1\|1689600_1691370_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_138278251.1\|1691333_1692416_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_063156171.1\|1692451_1692976_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_047955330.1\|1692980_1695452_+	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_047955331.1\|1695452_1696337_+	glycine zipper family protein	NA	NA	NA	NA
WP_047955332.1\|1696326_1696881_+	hypothetical protein	NA	NA	NA	NA
WP_014169450.1\|1697371_1697821_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA

DBSCAN-SWA_2

3006954 : 3013227

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138014015.1\|3006954_3007491_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	2.7e-50	57.9
WP_138014016.1\|3007494_3008373_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.9e-106	64.1
WP_047955854.1\|3008424_3009324_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	3.9e-30	36.1
WP_047955855.1\|3009323_3010409_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	3.3e-100	53.6
WP_020883269.1\|3010760_3011657_-	GalU regulator GalF	A0A127AW70	Bacillus_phage	1.2e-42	41.9
WP_138014017.1\|3011835_3013227_-	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	3.7e-19	31.9

DBSCAN-SWA_3

3956039 : 4021639

Erwinia_phage(28.57%)

plate,tail,tRNA,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138014163.1\|3956039_3957053_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	4.8e-109	58.6
WP_001144069.1\|3957289_3957505_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_025202985.1\|3957619_3959365_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	2.1e-75	38.5
WP_020883616.1\|3959515_3961363_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	8.4e-35	33.7
WP_025202984.1\|3961446_3961953_-	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
WP_138014164.1\|3962294_3962681_+	hypothetical protein	NA	NA	NA	NA
WP_138014165.1\|3962958_3963582_-	DUF4760 domain-containing protein	Q8HA56	Vibrio_phage	3.6e-22	38.7
WP_138014166.1\|3965962_3966517_-	hypothetical protein	F1BUJ9	Cronobacter_phage	9.8e-64	71.4
WP_138014167.1\|3967404_3967950_+	hypothetical protein	NA	NA	NA	NA
WP_032678990.1\|3968189_3968390_-	ogr/Delta-like zinc finger family protein	A0A2I8TV89	Erwinia_phage	6.3e-21	76.8
WP_138014168.1\|3968457_3969612_-	phage late control D family protein	A0A0M5M5V5	Salmonella_phage	2.1e-129	61.1
WP_014171677.1\|3969608_3970073_-\|tail	phage tail protein	O80317	Escherichia_phage	2.8e-56	67.9
WP_138014169.1\|3970084_3972532_-\|tail	phage tail tape measure protein	Q37848	Escherichia_phage	1.3e-147	47.3
WP_014171679.1\|3972524_3972644_-\|tail	GpE family phage tail protein	O80316	Escherichia_phage	2.8e-13	87.2
WP_014171681.1\|3973042_3973561_-\|tail	phage major tail tube protein	A0A218M4J0	Erwinia_phage	5.9e-79	80.2
WP_025202978.1\|3973572_3974760_-\|tail	phage tail sheath protein	A0A0F7LBW9	Escherichia_phage	8.8e-187	81.8
WP_049023877.1\|3975074_3975506_-\|tail	tail fiber assembly protein	B6SCW7	Bacteriophage	8.2e-18	40.0
WP_121339847.1\|3975507_3977706_-\|tail	phage tail protein	U5N099	Enterobacteria_phage	3.0e-92	81.4
WP_032678995.1\|3977717_3978248_-\|tail	phage tail protein I	Q37841	Escherichia_phage	3.6e-92	88.1
WP_138014170.1\|3978240_3979149_-\|plate	baseplate assembly protein	A0A0F7LCQ9	Escherichia_phage	4.9e-129	79.1
WP_014171687.1\|3979154_3979505_-	GPW/gp25 family protein	A0A0M4RE59	Salmonella_phage	1.5e-38	69.8
WP_020883605.1\|3979501_3980143_-\|plate	phage baseplate assembly protein V	A0A0M4S6F6	Salmonella_phage	2.4e-90	78.4
WP_138014171.1\|3980252_3980720_-\|tail	phage tail protein	A0A218M4K6	Erwinia_phage	3.1e-47	58.8
WP_072126476.1\|3980682_3980928_-\|holin	holin	S4TNY4	Salmonella_phage	1.1e-27	74.7
WP_025202971.1\|3980827_3981241_-	protein lysB	O80310	Escherichia_phage	5.6e-32	56.9
WP_047956126.1\|3981237_3981747_-	lysozyme	A0A218M4K3	Erwinia_phage	2.3e-75	82.1
WP_014171693.1\|3981730_3981952_-	primosomal protein	A0A218M4L5	Erwinia_phage	9.3e-26	76.4
WP_020883600.1\|3981942_3982146_-\|tail	tail protein X	A0A218M4L8	Erwinia_phage	1.8e-23	74.6
WP_020883599.1\|3982269_3982710_-	DinI-like family protein	A0A218M4I0	Erwinia_phage	1.0e-52	76.6
WP_138014305.1\|3982819_3985015_-	replication endonuclease	A0A218M4H2	Erwinia_phage	0.0e+00	74.6
WP_020883597.1\|3985022_3985244_-	TraR/DksA family transcriptional regulator	Q6K1F5	Salmonella_virus	2.1e-25	75.0
WP_040018794.1\|3985243_3985471_-	DUF2732 family protein	A0A0M3UL87	Salmonella_phage	1.9e-13	61.3
WP_040018793.1\|3985538_3985877_-	DUF5347 domain-containing protein	A0A218M4I7	Erwinia_phage	1.7e-42	76.6
WP_025202968.1\|3986164_3986740_+	phage repressor protein CI	A0A218M4J1	Erwinia_phage	5.2e-68	64.4
WP_047956131.1\|3987011_3988181_+	DNA repair protein	NA	NA	NA	NA
WP_032680231.1\|3988181_3988946_-	siderophore-interacting protein	NA	NA	NA	NA
WP_044858591.1\|3989092_3989587_+	PadR family transcriptional regulator	NA	NA	NA	NA
WP_138014172.1\|3989583_3991143_-	MCP four helix bundle domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	7.6e-13	31.4
WP_025202964.1\|3991478_3992999_-	PAS domain-containing methyl-accepting chemotaxis protein	A0A1B0V854	Salmonella_phage	4.9e-33	47.0
WP_020883590.1\|3993435_3994815_+	putrescine aminotransferase	A0A1V0SKB7	Klosneuvirus	7.6e-33	27.4
WP_020883589.1\|3994848_3995451_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_138014173.1\|3995493_3996180_+	B3/4 domain-containing protein	NA	NA	NA	NA
WP_138014174.1\|3996192_3997041_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
WP_020883586.1\|3997079_3997373_-	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase	NA	NA	NA	NA
WP_014171710.1\|3997369_3998257_-	3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase	NA	NA	NA	NA
WP_138014175.1\|3998268_3999270_-	autoinducer 2 ABC transporter substrate-binding protein LsrB	NA	NA	NA	NA
WP_014171712.1\|3999266_4000250_-	histidine kinase	NA	NA	NA	NA
WP_014171713.1\|4000250_4001282_-	autoinducer 2 ABC transporter permease LsrC	NA	NA	NA	NA
WP_138278316.1\|4001278_4002766_-	autoinducer 2 ABC transporter ATP-binding protein LsrA	F2Y302	Organic_Lake_phycodnavirus	2.1e-12	29.2
WP_020883581.1\|4002981_4003953_+	transcriptional regulator LsrR	NA	NA	NA	NA
WP_020883580.1\|4003986_4005567_+	autoinducer-2 kinase	NA	NA	NA	NA
WP_138014176.1\|4005727_4007749_+	NADPH-dependent 2,4-dienoyl-CoA reductase	NA	NA	NA	NA
WP_014171718.1\|4007810_4008947_-	23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG	NA	NA	NA	NA
WP_047956138.1\|4009032_4009536_+	M48 family metallopeptidase	NA	NA	NA	NA
WP_138014177.1\|4009606_4010605_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_025202952.1\|4010868_4011837_+	TerC family protein	A0A291LBC5	Escherichia_phage	5.7e-35	33.6
WP_014171722.1\|4012072_4013314_+	serine/threonine transporter SstT	NA	NA	NA	NA
WP_014171723.1\|4013416_4014904_-	altronate dehydratase	NA	NA	NA	NA
WP_014171724.1\|4014921_4016334_-	glucuronate isomerase	NA	NA	NA	NA
WP_138278318.1\|4016807_4018106_+	MFS transporter	NA	NA	NA	NA
WP_014171726.1\|4018223_4019000_+	transcriptional regulator ExuR	NA	NA	NA	NA
WP_014171727.1\|4019343_4020006_+	DedA family protein	NA	NA	NA	NA
WP_020883575.1\|4020008_4020392_+	EnvZ/OmpR regulon moderator MzrA	NA	NA	NA	NA
WP_014171729.1\|4020535_4020904_+	DUF1090 domain-containing protein	NA	NA	NA	NA
WP_003862645.1\|4020933_4021239_+	DUF883 domain-containing protein	NA	NA	NA	NA
WP_013098867.1\|4021240_4021639_+\|holin	phage holin family protein	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage