CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP040460	Pseudomonas stutzeri strain PheN2 chromosome, complete genome	0 crisprs	DEDDh,WYL,cas3,DinG,csa3,RT	0	0	4	0
NZ_CP040459	Pseudomonas stutzeri strain PheN2 plasmid unnamed, complete sequence	2 crisprs	RT	0	17	11	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

500687 : 534366

Pseudomonas_phage(33.33%)

capsid,holin,portal,integrase,head

attL 499020:499035|attR 507933:507948

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
499020:499035	attL	NA	NA	NA	NA
WP_138299509.1\|500687_501851_+\|integrase	site-specific integrase	L7TP61	Pseudomonas_virus	1.4e-149	70.1
WP_043296234.1\|501821_502100_-	Pyocin activator protein PrtN	A0A2K8HN48	Pseudomonas_phage	6.0e-30	70.2
WP_138299510.1\|502099_502399_-	hypothetical protein	NA	NA	NA	NA
WP_138299511.1\|502613_504206_-	DNA cytosine methyltransferase	A0A1I9KFD6	Aeromonas_phage	7.7e-138	53.3
WP_138299512.1\|504328_504835_+	hypothetical protein	NA	NA	NA	NA
WP_138299513.1\|504876_505476_-	phosphohydrolase	A0A1W6JP41	Morganella_phage	3.1e-31	48.6
WP_138299514.1\|505472_505958_-	hypothetical protein	NA	NA	NA	NA
WP_138299515.1\|506011_506824_-	DUF2303 family protein	A0A2R2Z323	Escherichia_phage	3.1e-50	42.9
WP_138299516.1\|506865_507213_-	hypothetical protein	A0A2D1GMS3	Marinobacter_phage	4.9e-13	42.5
WP_138299517.1\|507251_507512_-	transcriptional regulator	A0A2H4J8B4	uncultured_Caudovirales_phage	1.9e-14	48.8
WP_138299518.1\|507508_507904_-	hypothetical protein	NA	NA	NA	NA
WP_138299519.1\|507900_508176_-	hypothetical protein	NA	NA	NA	NA
507933:507948	attR	NA	NA	NA	NA
WP_138299520.1\|508187_508631_-	hypothetical protein	NA	NA	NA	NA
WP_081973318.1\|508627_508825_-	hypothetical protein	NA	NA	NA	NA
WP_138299521.1\|508879_509167_-	DUF1654 domain-containing protein	A0A0H5ARP1	Pseudomonas_phage	2.0e-20	65.3
WP_138299522.1\|509323_510091_-	DUF1828 domain-containing protein	A0A2H4JC42	uncultured_Caudovirales_phage	3.3e-94	61.6
WP_138301078.1\|510090_510537_-	hypothetical protein	A0A2H4J8G2	uncultured_Caudovirales_phage	8.4e-42	56.6
WP_138299523.1\|510602_511427_-	LexA family transcriptional regulator	A0A0H5BBV1	Pseudomonas_phage	1.1e-58	56.1
WP_138299524.1\|511378_511618_+	helix-turn-helix domain-containing protein	A0A2H4J0V8	uncultured_Caudovirales_phage	3.4e-13	55.7
WP_138299525.1\|511957_512443_+	hypothetical protein	NA	NA	NA	NA
WP_043296263.1\|512435_512657_+	hypothetical protein	H2BDI2	Pseudomonas_virus	5.1e-08	54.4
WP_138299526.1\|512676_513000_-	hypothetical protein	NA	NA	NA	NA
WP_138299527.1\|513025_513256_+	hypothetical protein	NA	NA	NA	NA
WP_138299528.1\|513286_516007_+	hypothetical protein	A0A2H4JF22	uncultured_Caudovirales_phage	3.2e-232	73.6
WP_138299529.1\|516003_516336_+	hypothetical protein	NA	NA	NA	NA
WP_138299530.1\|516332_516905_+	hypothetical protein	NA	NA	NA	NA
WP_043296268.1\|517183_517534_+	hypothetical protein	NA	NA	NA	NA
WP_138299531.1\|517526_517874_+\|holin	phage holin family protein	Q9MC42	Pseudomonas_phage	6.9e-07	41.4
WP_052078996.1\|518002_518512_+	hypothetical protein	NA	NA	NA	NA
WP_081973320.1\|518435_520469_+	hypothetical protein	A0A2D1GMT1	Marinobacter_phage	3.7e-169	48.2
WP_043296270.1\|520468_520678_+	hypothetical protein	K7PM10	Enterobacteria_phage	8.9e-10	50.0
WP_043296271.1\|520674_522255_+\|portal	phage portal protein	A0A2D1GMV5	Marinobacter_phage	2.2e-185	62.9
WP_043296273.1\|522263_523583_+	S49 family peptidase	A0A2D1GN02	Marinobacter_phage	3.3e-94	48.4
WP_138299532.1\|523582_523933_+\|head	head decoration protein	NA	NA	NA	NA
WP_138299533.1\|523992_524445_+	hypothetical protein	Q6UYI3	Burkholderia_phage	6.2e-24	42.5
WP_138299534.1\|524378_525017_+\|capsid	major capsid protein E	A0A2I6TCE5	Escherichia_phage	3.6e-38	43.2
WP_138299535.1\|525069_525282_+	hypothetical protein	NA	NA	NA	NA
WP_138299536.1\|525284_525620_+	hypothetical protein	NA	NA	NA	NA
WP_138299537.1\|525508_526192_+	hypothetical protein	NA	NA	NA	NA
WP_138299538.1\|526188_526653_+	hypothetical protein	NA	NA	NA	NA
WP_138299539.1\|526657_526846_+	hypothetical protein	NA	NA	NA	NA
WP_138299540.1\|526838_527579_+	hypothetical protein	A0A0M4U7A4	Ralstonia_phage	5.4e-09	24.4
WP_138299541.1\|527758_528241_-	hypothetical protein	A0A127KNL4	Pseudomonas_phage	4.5e-33	50.0
WP_138299542.1\|528320_528770_-	hypothetical protein	NA	NA	NA	NA
WP_138299543.1\|528955_529255_+	hypothetical protein	A0A1W6JT80	Pseudomonas_phage	4.4e-18	53.6
WP_138299544.1\|529358_532085_+	tape measure protein	A0A1B0YZV6	Pseudomonas_phage	5.2e-49	26.0
WP_138299545.1\|532174_532687_+	hypothetical protein	A0A0U4IIK1	Pseudomonas_phage	6.1e-36	48.8
WP_138299546.1\|532686_534366_+	hypothetical protein	A0A1W6JTA3	Pseudomonas_phage	5.5e-142	47.6

DBSCAN-SWA_2

539389 : 548145

Pseudomonas_phage(25.0%)

integrase

attL 542433:542447|attR 553062:553076

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138299552.1\|539389_540022_+	glycoside hydrolase family 19 protein	A0A125RNP1	Pseudomonas_phage	3.8e-80	70.7
WP_138299553.1\|539991_540570_+	hypothetical protein	A0A0M4RD57	Salmonella_phage	1.5e-06	40.9
WP_043296311.1\|540603_540873_+	hypothetical protein	A0A0U4JX18	Pseudomonas_phage	8.2e-16	49.4
WP_138299554.1\|541155_541953_+	DNA adenine methylase	Q8W6S4	Burkholderia_virus	1.5e-102	67.7
WP_138299555.1\|542155_542482_-	hypothetical protein	NA	NA	NA	NA
542433:542447	attL	NA	NA	NA	NA
WP_138299556.1\|542595_543303_-	hypothetical protein	A0A2H4J5W2	uncultured_Caudovirales_phage	2.6e-53	46.8
WP_138299557.1\|543403_543829_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	6.4e-23	47.5
WP_138299558.1\|543816_545073_+	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	2.6e-112	50.0
WP_138299559.1\|545189_545636_-	hypothetical protein	NA	NA	NA	NA
WP_138299560.1\|546099_546477_-	hypothetical protein	NA	NA	NA	NA
WP_138299561.1\|547029_548145_+\|integrase	site-specific integrase	L7TP61	Pseudomonas_virus	2.0e-124	61.3
553062:553076	attR	NA	NA	NA	NA

DBSCAN-SWA_3

917537 : 928569

uncultured_Caudovirales_phage(55.56%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_054094841.1\|917537_919895_+	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	1.9e-87	52.2
WP_043299067.1\|919912_920539_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_043299065.1\|920598_921924_+	replication-associated recombination protein A	G3MBE0	Bacillus_virus	6.1e-80	40.4
WP_138299733.1\|921920_922295_+	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	2.5e-07	36.0
WP_138299734.1\|922366_923647_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	3.6e-101	55.1
WP_077682441.1\|923791_925180_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_008570805.1\|925443_926112_+	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	9.0e-88	77.1
WP_043299058.1\|926203_926596_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	1.9e-50	76.0
WP_138299735.1\|926595_926955_+	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	3.3e-36	64.2
WP_138299736.1\|926954_927257_+	sulfurtransferase complex subunit TusB	NA	NA	NA	NA
WP_043299054.1\|927253_927589_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	2.0e-40	72.1
WP_138299737.1\|927585_928569_+	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	4.6e-141	75.5

DBSCAN-SWA_4

3026096 : 3040786

Bacillus_phage(70.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_043295128.1\|3026096_3026978_+	N-carbamoylputrescine amidase	A7IVZ1	Paramecium_bursaria_Chlorella_virus	3.8e-78	48.8
WP_138300664.1\|3027071_3028169_+	agmatine deiminase	M1I1E2	Acanthocystis_turfacea_Chlorella_virus	2.8e-110	53.2
WP_043295125.1\|3028191_3029190_-	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	2.8e-16	33.5
WP_138301140.1\|3029601_3032601_+	PAS domain S-box protein	A0A1V0SGX0	Hokovirus	7.0e-23	29.0
WP_043295124.1\|3032597_3032984_+	response regulator	W8CYM9	Bacillus_phage	1.1e-10	34.2
WP_138300665.1\|3033023_3035441_+	PAS domain-containing protein	W8CYF6	Bacillus_phage	8.7e-24	33.9
WP_043295096.1\|3035437_3035830_+	response regulator	W8CYM9	Bacillus_phage	8.3e-09	30.3
WP_138300666.1\|3035819_3037469_+	diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.4e-17	34.1
WP_138300667.1\|3037565_3040400_+	response regulator	W8CYF6	Bacillus_phage	3.7e-26	32.3
WP_043295092.1\|3040396_3040786_+	response regulator transcription factor	W8CYM9	Bacillus_phage	1.2e-15	40.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP040459

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP040459_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040459_1

2927-3283

Orphan

Consensus_repeat	Method
TACCGCAATTTGTTGTCGNT	CRT
GTACCGCAATCTGTTGTCGATAC	CRISPRCasFinder

7 spacers

The CRISPR arrays of NZ_CP040459_1

>merge|NZ_CP040459|1|2927-3283|CRT,CRISPRCasFinder
TGACGCTACCTGTTGTCGTTACCCGGTGCACGCTTGGTGTACCGCATTTTGTTGTCGAAGGACTCTGCGTATACCGCAATTTGTTGTCGTTACCGCTGCGTCAGCGGCGATCTCGATACCGCAATTTGTTGTCGATGCCCGTGTTTTGTGCGCCCCTGTTACCGCATTTTGTTGTCGATACCCTCCCAGGGAGGCTTTTTGGTACCGCAATTTGTTGTCGATGAGTGGTTCGAGAGCCGGTTTCATACCGCATTTTGTTGTCGTCATCGGCGTGGCTACTCCCGCACGTACCGCAATTTGTTGTCGTTGCGAGCGGAAATTGGCCTGTCGGAGCTACCGCAATCTGTTGTCGTTGCT

>NZ_CP040459|1|1|2927-3280|CRT
TGACGCTACCTGTTGTCGTT	ACCCGGTGCACGCTTGGTGTACCGCATTTTGTTGTCGAAGGACTCTGCGTA
TACCGCAATTTGTTGTCGTT	ACCGCTGCGTCAGCGGCGATCTCGA
TACCGCAATTTGTTGTCGAT	GCCCGTGTTTTGTGCGCCCCTGT
TACCGCATTTTGTTGTCGAT	ACCCTCCCAGGGAGGCTTTTTGG
TACCGCAATTTGTTGTCGAT	GAGTGGTTCGAGAGCCGGTTTCA
TACCGCATTTTGTTGTCGTC	ATCGGCGTGGCTACTCCCGCACG
TACCGCAATTTGTTGTCGTT	GCGAGCGGAAATTGGCCTGTCGGAGC
TACCGCAATCTGTTGTCGTT

>NZ_CP040459|1|1|3128-3283|CRISPRCasFinder
GTACCGCAATTTGTTGTCGATGA	GTGGTTCGAGAGCCGGTTTC
ATACCGCATTTTGTTGTCGTCAT	CGGCGTGGCTACTCCCGCAC
GTACCGCAATTTGTTGTCGTTGC	GAGCGGAAATTGGCCTGTCGGAG
CTACCGCAATCTGTTGTCGTTGCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040459.1\|WP_138299178.1\|1883_2831_-\|replication-initiation-protein	unknown	unknown	gnl\|CDD\|376444
NZ_CP040459.1\|WP_019405868.1\|9450_9702_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040459.1\|WP_138299179.1\|3974_4382_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040459.1\|WP_138299182.1\|9788_10022_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040459.1\|WP_040138036.1\|9173_9437_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040459.1\|WP_138299181.1\|8126_8486_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040459.1\|WP_138299180.1\|4750_6265_+\|IS21-family-transposase	unknown	unknown	gnl\|CDD\|226950
NZ_CP040459.1\|WP_079384029.1\|6987_7167_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040459.1\|WP_019437637.1\|6282_7038_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|366760
NZ_CP040459.1\|WP_019405865.1\|8561_8819_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040459.1\|WP_019405866.1\|8894_9158_-\|hypothetical-protein	unknown	unknown	unknown

>NZ_CP040459.1|WP_138299178.1|1883_2831_-|replication-initiation-protein
MVVLSVIVKRSQVVARKSASAAVESDPGTQRPLRISKSNELITASYRLTLNEQRLILAAISRLDPRRPMPKRVAVSAIDYAEIYGVQLKHAYKQMSTAADELYERDIDFTDSKSRQRHRWIDAAKYTEGTVELSFTIHVIPYLTMLYNKVTTYDLRRVARVDSVYALRLFEMLMQFRKTGWLYIEVERFRHAMGLTDEYKRFNSLRQRVIDPAIAELKIKCKLDVECERITTGRTVVAIKFIFQDQAQMTLPLPDDFDNDFELEGDQGLRETTAETLEPEWFDTRPIGELDDDIVEGVIIEGEIVSLPSTEKANG
>NZ_CP040459.1|WP_138299179.1|3974_4382_-|hypothetical-protein
MDSRTLYNLATNPQALMRLRTTGHLPAVRNPSSPLITLLQTLHPRERLQITGVTVGSSLGYTGCRRFHNAQQVLNWLVPPGDHSRVASESWQDKRFQRELGIDDLAKVASVPKIVAEGWCRRNPQKAKRVGADQA
>NZ_CP040459.1|WP_138299180.1|4750_6265_+|IS21-family-transposase
MRKIREVLRLKFEVGLSARQIAVSVQVGRVTVGDYLNRFAASGLSWPCSLSDAELEQQLFPPAPAVASEKRPLPDWAWVHAELRRPGVTLALLWQEYRLSQPQGFQYSWFCEHYRAWQGKLDVVMRQEHRVGEKLFVDYAGQTVPVIDRHSGEIRQAQVFVAVLGASSYTFAEATWSQQLPDWLGSHARCFAFLGGVPEIVVPDNLRSAVSKAHRYEPDINPSYRDLAEHYGVAVVPARARKPRDKAKAEVGVQVVERWILAALRNRQFFSLDELNSAIAGLLERLNRRPFRKLPGSRQSAFEALDRPALRPLPEQPYVYAEWKKARVHIDYHVEVDGHYYSVPYQLVKKQLEVRLTARTVECFHANQRVASHLRSMHKGRHSTQAEHMPKSHREHAEWTPQRLIRWAEQTGPNTAGVIRHILERRIHPQQGYRACLGILRLGKTHGEVRLELACRRALSLGACSYKSLESILRQGLENLPLAQTNLPLLPDDHANLRGSAYYH
>NZ_CP040459.1|WP_019437637.1|6282_7038_+|ATP-binding-protein
MLPHPTLDKLQTLRLHGMLKALNEQLKTPDIDSLSFEERLGLLVDRELTERDDKRLSSRLRQARLKHNACLEDIDYRSPRGLDKALILQLSSGQWLRDGLNLIIGGPTGVGKTWLACALAHQACREGYSVRYLRLPRLLEELGLAHGDGRFAKLMSSYAKTDLLILDDWGLAPFTGEQRRDMLELLDDRYGQRSTIVTSQMPVDNWHELIGDPTLADAILDRLVHNAYRINLKGESMRKRTQKLTTPANPD
>NZ_CP040459.1|WP_079384029.1|6987_7167_-|hypothetical-protein
MRIPHHPATQSTLIWPGIPRPSGHLFHGHPAGQSERSDAGVALLVRVGWRRQFLRPFAH
>NZ_CP040459.1|WP_138299181.1|8126_8486_+|hypothetical-protein
MFKTNSRVIWSSTDSDGPGPVVATVVGPLSPAEYDREEVGPMFTISLPNGTTETAFADELSAADAAPDFAVMNRAELSAWYEENVGYDLGQDDPAMTLESYRQQCGEMFALHALADESF
>NZ_CP040459.1|WP_019405865.1|8561_8819_+|hypothetical-protein
MITWTFFFVSVIAACVHRYSGNHQKCTITFLLLGSVTLWMREDWEQMPHIFSADTQLVIWTVLQAIFAGIAFYVRDIPVEDSHKV
>NZ_CP040459.1|WP_019405866.1|8894_9158_-|hypothetical-protein
MYVNDAECQAAGLDPAEVARITRGLSRYAKQAQALGLCVFGGSGSGSLRKDDHPRGALVLASLDGVFDGGDGACAPDDDGLMRGEYA
>NZ_CP040459.1|WP_040138036.1|9173_9437_-|hypothetical-protein
MTQLEQTIIANAKRELAVVLVYYGQKAAGIKAAKGEDAWLEYLGHYNSLNALLSLAHQAESGLSEEGTQALLDIEAQHTEAYRIMAS
>NZ_CP040459.1|WP_019405868.1|9450_9702_-|hypothetical-protein
MIEQPISPEDEARFMQIMAGYDEAMREHFTGPAPMCHFTPMEFHDAEAGDGSGYQCVHCGHTEDADEAWAKVAARKQRQAATN
>NZ_CP040459.1|WP_138299182.1|9788_10022_-|hypothetical-protein
MLSLDAHSILKAIAVLLIWISCAVVASFFMFPAWEVMKMILVGLSPLIAAIAVLGVTFLVSLRDKRRSKSESDNERQ

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP040459_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040459_2

3495-3741

Orphan

Consensus_repeat	Method
GTACCGCAATCTGTTGTCGATAC	CRISPRCasFinder
CCGCAATCTGTTGTCGATAC	PILER-CR

4 spacers

The CRISPR arrays of NZ_CP040459_2

>merge|NZ_CP040459|2|3495-3741|CRISPRCasFinder,PILER-CR
ATACCGCATTTTGTTGTCGATACTGAGCAGTAGCGTTGGCCTTCCGATACCGCAATTTGTTGTCGTTGATGGGCGGGAGCTGGTCTTTCGGGTACCGCAATCTGTTGTCGATACCCAGCTGGCGGGGCCTGTGGAAAACAGCCGCAATCTGTTGTCGTTGCTACCGCAATCTGTTGTCGATACTGCCGCAATTTGATGTCGCATTACCGCCAGATGTTGTCGCAAACCCGCAATCTGTTGTCGATCC

>NZ_CP040459|2|2|3495-3720|CRISPRCasFinder
ATACCGCATTTTGTTGTCGATAC	TGAGCAGTAGCGTTGGCCTTCCG
ATACCGCAATTTGTTGTCGTTGA	TGGGCGGGAGCTGGTCTTTCGG
GTACCGCAATCTGTTGTCGATAC	CCAGCTGGCGGGGCCTGTGGAAAA
CAGCCGCAATCTGTTGTCGTTGC	TACCGCAATCTGTTGTCGATACTGCCGCAATTTGATGTCGCA
TTACCGCCAGATGTTGTCGCAAA

>NZ_CP040459|2|1|3498-3741|PILER-CR
CCGCATTTTGTTGTCGATAC	TGAGCAGTAGCGTTGGCCTTCCGATACCGCAATTTGTTGTCGTTGATGGGCGGGAGCTGGTCTTTCGGGTA
CCGCAATCTGTTGTCGATAC	CCAGCTGGCGGGGCCTGTGGAAAACAGCCGCAATCTGTTGTCGTTGCTA
CCGCAATCTGTTGTCGATAC	TGCCGCAATTTGATGTCGCATTACCGCCAGATGTTGTCGCAAAC
CCGCAATCTGTTGTCGATCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040459.1\|WP_138299178.1\|1883_2831_-\|replication-initiation-protein	unknown	unknown	gnl\|CDD\|376444
NZ_CP040459.1\|WP_019405868.1\|9450_9702_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040459.1\|WP_138299179.1\|3974_4382_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040459.1\|WP_138299182.1\|9788_10022_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040459.1\|WP_040138036.1\|9173_9437_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040459.1\|WP_138299181.1\|8126_8486_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040459.1\|WP_138299180.1\|4750_6265_+\|IS21-family-transposase	unknown	unknown	gnl\|CDD\|226950
NZ_CP040459.1\|WP_079384029.1\|6987_7167_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040459.1\|WP_019437637.1\|6282_7038_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|366760
NZ_CP040459.1\|WP_019405865.1\|8561_8819_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040459.1\|WP_019405866.1\|8894_9158_-\|hypothetical-protein	unknown	unknown	unknown

>NZ_CP040459.1|WP_138299178.1|1883_2831_-|replication-initiation-protein
MVVLSVIVKRSQVVARKSASAAVESDPGTQRPLRISKSNELITASYRLTLNEQRLILAAISRLDPRRPMPKRVAVSAIDYAEIYGVQLKHAYKQMSTAADELYERDIDFTDSKSRQRHRWIDAAKYTEGTVELSFTIHVIPYLTMLYNKVTTYDLRRVARVDSVYALRLFEMLMQFRKTGWLYIEVERFRHAMGLTDEYKRFNSLRQRVIDPAIAELKIKCKLDVECERITTGRTVVAIKFIFQDQAQMTLPLPDDFDNDFELEGDQGLRETTAETLEPEWFDTRPIGELDDDIVEGVIIEGEIVSLPSTEKANG
>NZ_CP040459.1|WP_138299179.1|3974_4382_-|hypothetical-protein
MDSRTLYNLATNPQALMRLRTTGHLPAVRNPSSPLITLLQTLHPRERLQITGVTVGSSLGYTGCRRFHNAQQVLNWLVPPGDHSRVASESWQDKRFQRELGIDDLAKVASVPKIVAEGWCRRNPQKAKRVGADQA
>NZ_CP040459.1|WP_138299180.1|4750_6265_+|IS21-family-transposase
MRKIREVLRLKFEVGLSARQIAVSVQVGRVTVGDYLNRFAASGLSWPCSLSDAELEQQLFPPAPAVASEKRPLPDWAWVHAELRRPGVTLALLWQEYRLSQPQGFQYSWFCEHYRAWQGKLDVVMRQEHRVGEKLFVDYAGQTVPVIDRHSGEIRQAQVFVAVLGASSYTFAEATWSQQLPDWLGSHARCFAFLGGVPEIVVPDNLRSAVSKAHRYEPDINPSYRDLAEHYGVAVVPARARKPRDKAKAEVGVQVVERWILAALRNRQFFSLDELNSAIAGLLERLNRRPFRKLPGSRQSAFEALDRPALRPLPEQPYVYAEWKKARVHIDYHVEVDGHYYSVPYQLVKKQLEVRLTARTVECFHANQRVASHLRSMHKGRHSTQAEHMPKSHREHAEWTPQRLIRWAEQTGPNTAGVIRHILERRIHPQQGYRACLGILRLGKTHGEVRLELACRRALSLGACSYKSLESILRQGLENLPLAQTNLPLLPDDHANLRGSAYYH
>NZ_CP040459.1|WP_019437637.1|6282_7038_+|ATP-binding-protein
MLPHPTLDKLQTLRLHGMLKALNEQLKTPDIDSLSFEERLGLLVDRELTERDDKRLSSRLRQARLKHNACLEDIDYRSPRGLDKALILQLSSGQWLRDGLNLIIGGPTGVGKTWLACALAHQACREGYSVRYLRLPRLLEELGLAHGDGRFAKLMSSYAKTDLLILDDWGLAPFTGEQRRDMLELLDDRYGQRSTIVTSQMPVDNWHELIGDPTLADAILDRLVHNAYRINLKGESMRKRTQKLTTPANPD
>NZ_CP040459.1|WP_079384029.1|6987_7167_-|hypothetical-protein
MRIPHHPATQSTLIWPGIPRPSGHLFHGHPAGQSERSDAGVALLVRVGWRRQFLRPFAH
>NZ_CP040459.1|WP_138299181.1|8126_8486_+|hypothetical-protein
MFKTNSRVIWSSTDSDGPGPVVATVVGPLSPAEYDREEVGPMFTISLPNGTTETAFADELSAADAAPDFAVMNRAELSAWYEENVGYDLGQDDPAMTLESYRQQCGEMFALHALADESF
>NZ_CP040459.1|WP_019405865.1|8561_8819_+|hypothetical-protein
MITWTFFFVSVIAACVHRYSGNHQKCTITFLLLGSVTLWMREDWEQMPHIFSADTQLVIWTVLQAIFAGIAFYVRDIPVEDSHKV
>NZ_CP040459.1|WP_019405866.1|8894_9158_-|hypothetical-protein
MYVNDAECQAAGLDPAEVARITRGLSRYAKQAQALGLCVFGGSGSGSLRKDDHPRGALVLASLDGVFDGGDGACAPDDDGLMRGEYA
>NZ_CP040459.1|WP_040138036.1|9173_9437_-|hypothetical-protein
MTQLEQTIIANAKRELAVVLVYYGQKAAGIKAAKGEDAWLEYLGHYNSLNALLSLAHQAESGLSEEGTQALLDIEAQHTEAYRIMAS
>NZ_CP040459.1|WP_019405868.1|9450_9702_-|hypothetical-protein
MIEQPISPEDEARFMQIMAGYDEAMREHFTGPAPMCHFTPMEFHDAEAGDGSGYQCVHCGHTEDADEAWAKVAARKQRQAATN
>NZ_CP040459.1|WP_138299182.1|9788_10022_-|hypothetical-protein
MLSLDAHSILKAIAVLLIWISCAVVASFFMFPAWEVMKMILVGLSPLIAAIAVLGVTFLVSLRDKRRSKSESDNERQ

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP040459_1	1.1\|2947\|51\|NZ_CP040459\|CRT	2947-2997	51	NZ_CP040459	Pseudomonas stutzeri strain PheN2 plasmid unnamed, complete sequence	2947-2997	0	1.0
NZ_CP040459_1	1.2\|3018\|25\|NZ_CP040459\|CRT	3018-3042	25	NZ_CP040459	Pseudomonas stutzeri strain PheN2 plasmid unnamed, complete sequence	3018-3042	0	1.0
NZ_CP040459_1	1.3\|3063\|23\|NZ_CP040459\|CRT	3063-3085	23	NZ_CP040459	Pseudomonas stutzeri strain PheN2 plasmid unnamed, complete sequence	3063-3085	0	1.0
NZ_CP040459_1	1.4\|3106\|23\|NZ_CP040459\|CRT	3106-3128	23	NZ_CP040459	Pseudomonas stutzeri strain PheN2 plasmid unnamed, complete sequence	3106-3128	0	1.0
NZ_CP040459_1	1.5\|3149\|23\|NZ_CP040459\|CRT	3149-3171	23	NZ_CP040459	Pseudomonas stutzeri strain PheN2 plasmid unnamed, complete sequence	3149-3171	0	1.0
NZ_CP040459_1	1.6\|3192\|23\|NZ_CP040459\|CRT	3192-3214	23	NZ_CP040459	Pseudomonas stutzeri strain PheN2 plasmid unnamed, complete sequence	3192-3214	0	1.0
NZ_CP040459_1	1.7\|3235\|26\|NZ_CP040459\|CRT	3235-3260	26	NZ_CP040459	Pseudomonas stutzeri strain PheN2 plasmid unnamed, complete sequence	3235-3260	0	1.0
NZ_CP040459_1	1.8\|3151\|20\|NZ_CP040459\|CRISPRCasFinder	3151-3170	20	NZ_CP040459	Pseudomonas stutzeri strain PheN2 plasmid unnamed, complete sequence	3151-3170	0	1.0
NZ_CP040459_1	1.9\|3194\|20\|NZ_CP040459\|CRISPRCasFinder	3194-3213	20	NZ_CP040459	Pseudomonas stutzeri strain PheN2 plasmid unnamed, complete sequence	3194-3213	0	1.0
NZ_CP040459_1	1.10\|3237\|23\|NZ_CP040459\|CRISPRCasFinder	3237-3259	23	NZ_CP040459	Pseudomonas stutzeri strain PheN2 plasmid unnamed, complete sequence	3237-3259	0	1.0
NZ_CP040459_2	2.1\|3518\|23\|NZ_CP040459\|CRISPRCasFinder	3518-3540	23	NZ_CP040459	Pseudomonas stutzeri strain PheN2 plasmid unnamed, complete sequence	3518-3540	0	1.0
NZ_CP040459_2	2.2\|3564\|22\|NZ_CP040459\|CRISPRCasFinder	3564-3585	22	NZ_CP040459	Pseudomonas stutzeri strain PheN2 plasmid unnamed, complete sequence	3564-3585	0	1.0
NZ_CP040459_2	2.3\|3609\|24\|NZ_CP040459\|CRISPRCasFinder	3609-3632	24	NZ_CP040459	Pseudomonas stutzeri strain PheN2 plasmid unnamed, complete sequence	3609-3632	0	1.0
NZ_CP040459_2	2.4\|3656\|42\|NZ_CP040459\|CRISPRCasFinder	3656-3697	42	NZ_CP040459	Pseudomonas stutzeri strain PheN2 plasmid unnamed, complete sequence	3656-3697	0	1.0
NZ_CP040459_2	2.6\|3609\|49\|NZ_CP040459\|PILER-CR	3609-3657	49	NZ_CP040459	Pseudomonas stutzeri strain PheN2 plasmid unnamed, complete sequence	3609-3657	0	1.0
NZ_CP040459_2	2.7\|3678\|44\|NZ_CP040459\|PILER-CR	3678-3721	44	NZ_CP040459	Pseudomonas stutzeri strain PheN2 plasmid unnamed, complete sequence	3678-3721	0	1.0
NZ_CP040459_1	1.6\|3192\|23\|NZ_CP040459\|CRT	3192-3214	23	NZ_LR134451	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 9, complete sequence	197819-197841	2	0.913
NZ_CP040459_1	1.2\|3018\|25\|NZ_CP040459\|CRT	3018-3042	25	NZ_CP050092	Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b6, complete sequence	779812-779836	3	0.88
NZ_CP040459_1	1.2\|3018\|25\|NZ_CP040459\|CRT	3018-3042	25	NZ_CP050081	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b5, complete sequence	721087-721111	3	0.88
NZ_CP040459_1	1.2\|3018\|25\|NZ_CP040459\|CRT	3018-3042	25	NZ_CP050104	Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b2, complete sequence	229959-229983	3	0.88
NZ_CP040459_1	1.2\|3018\|25\|NZ_CP040459\|CRT	3018-3042	25	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	1536748-1536772	3	0.88
NZ_CP040459_1	1.2\|3018\|25\|NZ_CP040459\|CRT	3018-3042	25	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	208709-208733	3	0.88
NZ_CP040459_1	1.2\|3018\|25\|NZ_CP040459\|CRT	3018-3042	25	NZ_CP021033	Rhizobium sp. NXC14 plasmid pRspNXC14c, complete sequence	399644-399668	3	0.88
NZ_CP040459_1	1.2\|3018\|25\|NZ_CP040459\|CRT	3018-3042	25	NZ_CP025013	Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence	1045648-1045672	3	0.88
NZ_CP040459_1	1.2\|3018\|25\|NZ_CP040459\|CRT	3018-3042	25	NZ_CP049731	Rhizobium leguminosarum strain A1 plasmid pRL12, complete sequence	756361-756385	3	0.88
NZ_CP040459_1	1.2\|3018\|25\|NZ_CP040459\|CRT	3018-3042	25	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	211535-211559	3	0.88
NZ_CP040459_1	1.2\|3018\|25\|NZ_CP040459\|CRT	3018-3042	25	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	1497554-1497578	3	0.88
NZ_CP040459_1	1.2\|3018\|25\|NZ_CP040459\|CRT	3018-3042	25	NZ_CP025507	Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvA, complete sequence	1210907-1210931	3	0.88
NZ_CP040459_1	1.2\|3018\|25\|NZ_CP040459\|CRT	3018-3042	25	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	276246-276270	3	0.88
NZ_CP040459_1	1.2\|3018\|25\|NZ_CP040459\|CRT	3018-3042	25	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	948945-948969	3	0.88
NZ_CP040459_1	1.2\|3018\|25\|NZ_CP040459\|CRT	3018-3042	25	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	1088421-1088445	3	0.88
NZ_CP040459_1	1.2\|3018\|25\|NZ_CP040459\|CRT	3018-3042	25	NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	1482363-1482387	3	0.88
NZ_CP040459_1	1.2\|3018\|25\|NZ_CP040459\|CRT	3018-3042	25	NC_018701	Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence	1515800-1515824	3	0.88
NZ_CP040459_1	1.2\|3018\|25\|NZ_CP040459\|CRT	3018-3042	25	NZ_CP050109	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b2, complete sequence	229959-229983	3	0.88
NZ_CP040459_1	1.2\|3018\|25\|NZ_CP040459\|CRT	3018-3042	25	NZ_CP030761	Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed1, complete sequence	368823-368847	3	0.88
NZ_CP040459_1	1.2\|3018\|25\|NZ_CP040459\|CRT	3018-3042	25	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	1458788-1458812	3	0.88
NZ_CP040459_1	1.2\|3018\|25\|NZ_CP040459\|CRT	3018-3042	25	NZ_CP054028	Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence	454283-454307	3	0.88
NZ_CP040459_1	1.2\|3018\|25\|NZ_CP040459\|CRT	3018-3042	25	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	114815-114839	3	0.88
NZ_CP040459_1	1.2\|3018\|25\|NZ_CP040459\|CRT	3018-3042	25	NZ_CP022666	Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR1, complete sequence	634444-634468	3	0.88
NZ_CP040459_1	1.2\|3018\|25\|NZ_CP040459\|CRT	3018-3042	25	NZ_CP021820	Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence	193953-193977	3	0.88
NZ_CP040459_1	1.2\|3018\|25\|NZ_CP040459\|CRT	3018-3042	25	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	99584-99608	3	0.88
NZ_CP040459_1	1.2\|3018\|25\|NZ_CP040459\|CRT	3018-3042	25	NZ_CP023071	Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence	910090-910114	3	0.88
NZ_CP040459_1	1.2\|3018\|25\|NZ_CP040459\|CRT	3018-3042	25	NZ_CP021823	Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence	1575279-1575303	3	0.88
NZ_CP040459_1	1.2\|3018\|25\|NZ_CP040459\|CRT	3018-3042	25	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	1110868-1110892	3	0.88
NZ_CP040459_1	1.2\|3018\|25\|NZ_CP040459\|CRT	3018-3042	25	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	639697-639721	3	0.88
NZ_CP040459_1	1.2\|3018\|25\|NZ_CP040459\|CRT	3018-3042	25	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	1163571-1163595	3	0.88
NZ_CP040459_1	1.2\|3018\|25\|NZ_CP040459\|CRT	3018-3042	25	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	4409-4433	3	0.88
NZ_CP040459_1	1.2\|3018\|25\|NZ_CP040459\|CRT	3018-3042	25	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	1526483-1526507	3	0.88
NZ_CP040459_1	1.2\|3018\|25\|NZ_CP040459\|CRT	3018-3042	25	NZ_CP054032	Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence	162745-162769	3	0.88
NZ_CP040459_1	1.2\|3018\|25\|NZ_CP040459\|CRT	3018-3042	25	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	418519-418543	3	0.88
NZ_CP040459_1	1.2\|3018\|25\|NZ_CP040459\|CRT	3018-3042	25	NZ_CP053206	Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1D, complete sequence	756510-756534	3	0.88
NZ_CP040459_1	1.2\|3018\|25\|NZ_CP040459\|CRT	3018-3042	25	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	205975-205999	3	0.88
NZ_CP040459_1	1.2\|3018\|25\|NZ_CP040459\|CRT	3018-3042	25	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	208709-208733	3	0.88
NZ_CP040459_1	1.2\|3018\|25\|NZ_CP040459\|CRT	3018-3042	25	NZ_CP050086	Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b7, complete sequence	230354-230378	3	0.88
NZ_CP040459_1	1.3\|3063\|23\|NZ_CP040459\|CRT	3063-3085	23	MH576962	Streptomyces phage Satis, complete genome	547-569	3	0.87
NZ_CP040459_1	1.3\|3063\|23\|NZ_CP040459\|CRT	3063-3085	23	MH576962	Streptomyces phage Satis, complete genome	186200-186222	3	0.87
NZ_CP040459_1	1.3\|3063\|23\|NZ_CP040459\|CRT	3063-3085	23	MK620894	Streptomyces phage Kradal, complete genome	547-569	3	0.87
NZ_CP040459_1	1.3\|3063\|23\|NZ_CP040459\|CRT	3063-3085	23	MK620894	Streptomyces phage Kradal, complete genome	185877-185899	3	0.87
NZ_CP040459_2	2.3\|3609\|24\|NZ_CP040459\|CRISPRCasFinder	3609-3632	24	NZ_CP036260	Sporomusa termitida strain DSM 4440 plasmid pSPTER, complete sequence	62082-62105	3	0.875
NZ_CP040459_1	1.2\|3018\|25\|NZ_CP040459\|CRT	3018-3042	25	NZ_CP006370	Aureimonas sp. AU20 plasmid pAU20c, complete sequence	242694-242718	4	0.84
NZ_CP040459_1	1.2\|3018\|25\|NZ_CP040459\|CRT	3018-3042	25	CP006880	Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence	1658383-1658407	4	0.84
NZ_CP040459_1	1.2\|3018\|25\|NZ_CP040459\|CRT	3018-3042	25	MH051254	Mycobacterium phage Jabiru, complete genome	28904-28928	4	0.84
NZ_CP040459_1	1.2\|3018\|25\|NZ_CP040459\|CRT	3018-3042	25	NC_028802	Mycobacterium phage UnionJack, complete genome	28592-28616	4	0.84
NZ_CP040459_1	1.2\|3018\|25\|NZ_CP040459\|CRT	3018-3042	25	MN586060	Mycobacterium phage PetterN, complete genome	28759-28783	4	0.84
NZ_CP040459_1	1.2\|3018\|25\|NZ_CP040459\|CRT	3018-3042	25	MK494091	Mycobacterium phage Scorpia, complete genome	28836-28860	4	0.84
NZ_CP040459_1	1.2\|3018\|25\|NZ_CP040459\|CRT	3018-3042	25	JX042578	Mycobacteriophage ElTiger69, complete genome	28854-28878	4	0.84
NZ_CP040459_1	1.2\|3018\|25\|NZ_CP040459\|CRT	3018-3042	25	MG099938	Mycobacterium phage Archetta, complete genome	29367-29391	4	0.84
NZ_CP040459_1	1.2\|3018\|25\|NZ_CP040459\|CRT	3018-3042	25	MH338241	Mycobacterium phage Tarynearal, complete genome	29072-29096	4	0.84
NZ_CP040459_1	1.2\|3018\|25\|NZ_CP040459\|CRT	3018-3042	25	MN586062	Mycobacterium phage Lev2, complete genome	28962-28986	4	0.84
NZ_CP040459_1	1.2\|3018\|25\|NZ_CP040459\|CRT	3018-3042	25	NC_022973	Mycobacterium phage Conspiracy, complete genome	29049-29073	4	0.84
NZ_CP040459_1	1.2\|3018\|25\|NZ_CP040459\|CRT	3018-3042	25	KT246486	Mycobacterium phage Chadwick, complete genome	28759-28783	4	0.84
NZ_CP040459_1	1.2\|3018\|25\|NZ_CP040459\|CRT	3018-3042	25	KF493882	Mycobacterium phage Jovo, complete genome	29330-29354	4	0.84
NZ_CP040459_1	1.2\|3018\|25\|NZ_CP040459\|CRT	3018-3042	25	MH338235	Mycobacterium phage Dublin, complete genome	28868-28892	4	0.84
NZ_CP040459_1	1.2\|3018\|25\|NZ_CP040459\|CRT	3018-3042	25	NC_028960	Mycobacterium phage Theia, complete genome	29095-29119	4	0.84
NZ_CP040459_1	1.2\|3018\|25\|NZ_CP040459\|CRT	3018-3042	25	MG099944	Mycobacterium phage ForGetIt, complete genome	29074-29098	4	0.84
NZ_CP040459_1	1.2\|3018\|25\|NZ_CP040459\|CRT	3018-3042	25	MH020239	Mycobacterium phage Naca, complete genome	29396-29420	4	0.84
NZ_CP040459_1	1.2\|3018\|25\|NZ_CP040459\|CRT	3018-3042	25	JN083853	Mycobacterium phage Airmid, complete genome	28862-28886	4	0.84
NZ_CP040459_1	1.2\|3018\|25\|NZ_CP040459\|CRT	3018-3042	25	JN083852	Mycobacterium virus Benedict, complete genome	28857-28881	4	0.84
NZ_CP040459_1	1.2\|3018\|25\|NZ_CP040459\|CRT	3018-3042	25	NC_012811	Methylorubrum extorquens AM1 megaplasmid, complete sequence	603114-603138	5	0.8
NZ_CP040459_2	2.5\|3518\|71\|NZ_CP040459\|PILER-CR	3518-3588	71	NZ_CP040459	Pseudomonas stutzeri strain PheN2 plasmid unnamed, complete sequence	3518-3588	11	0.845

1. spacer 1.1|2947|51|NZ_CP040459|CRT matches to NZ_CP040459 (Pseudomonas stutzeri strain PheN2 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

acccggtgcacgcttggtgtaccgcattttgttgtcgaaggactctgcgta	CRISPR spacer
acccggtgcacgcttggtgtaccgcattttgttgtcgaaggactctgcgta	Protospacer
***************************************************

2. spacer 1.2|3018|25|NZ_CP040459|CRT matches to NZ_CP040459 (Pseudomonas stutzeri strain PheN2 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

accgctgcgtcagcggcgatctcga	CRISPR spacer
accgctgcgtcagcggcgatctcga	Protospacer
*************************

3. spacer 1.3|3063|23|NZ_CP040459|CRT matches to NZ_CP040459 (Pseudomonas stutzeri strain PheN2 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

gcccgtgttttgtgcgcccctgt	CRISPR spacer
gcccgtgttttgtgcgcccctgt	Protospacer
***********************

4. spacer 1.4|3106|23|NZ_CP040459|CRT matches to NZ_CP040459 (Pseudomonas stutzeri strain PheN2 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

accctcccagggaggctttttgg	CRISPR spacer
accctcccagggaggctttttgg	Protospacer
***********************

5. spacer 1.5|3149|23|NZ_CP040459|CRT matches to NZ_CP040459 (Pseudomonas stutzeri strain PheN2 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

gagtggttcgagagccggtttca	CRISPR spacer
gagtggttcgagagccggtttca	Protospacer
***********************

6. spacer 1.6|3192|23|NZ_CP040459|CRT matches to NZ_CP040459 (Pseudomonas stutzeri strain PheN2 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

atcggcgtggctactcccgcacg	CRISPR spacer
atcggcgtggctactcccgcacg	Protospacer
***********************

7. spacer 1.7|3235|26|NZ_CP040459|CRT matches to NZ_CP040459 (Pseudomonas stutzeri strain PheN2 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

gcgagcggaaattggcctgtcggagc	CRISPR spacer
gcgagcggaaattggcctgtcggagc	Protospacer
**************************

8. spacer 1.8|3151|20|NZ_CP040459|CRISPRCasFinder matches to NZ_CP040459 (Pseudomonas stutzeri strain PheN2 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

gtggttcgagagccggtttc	CRISPR spacer
gtggttcgagagccggtttc	Protospacer
********************

9. spacer 1.9|3194|20|NZ_CP040459|CRISPRCasFinder matches to NZ_CP040459 (Pseudomonas stutzeri strain PheN2 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

cggcgtggctactcccgcac	CRISPR spacer
cggcgtggctactcccgcac	Protospacer
********************

10. spacer 1.10|3237|23|NZ_CP040459|CRISPRCasFinder matches to NZ_CP040459 (Pseudomonas stutzeri strain PheN2 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

gagcggaaattggcctgtcggag	CRISPR spacer
gagcggaaattggcctgtcggag	Protospacer
***********************

11. spacer 2.1|3518|23|NZ_CP040459|CRISPRCasFinder matches to NZ_CP040459 (Pseudomonas stutzeri strain PheN2 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

tgagcagtagcgttggccttccg	CRISPR spacer
tgagcagtagcgttggccttccg	Protospacer
***********************

12. spacer 2.2|3564|22|NZ_CP040459|CRISPRCasFinder matches to NZ_CP040459 (Pseudomonas stutzeri strain PheN2 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

tgggcgggagctggtctttcgg	CRISPR spacer
tgggcgggagctggtctttcgg	Protospacer
**********************

13. spacer 2.3|3609|24|NZ_CP040459|CRISPRCasFinder matches to NZ_CP040459 (Pseudomonas stutzeri strain PheN2 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

ccagctggcggggcctgtggaaaa	CRISPR spacer
ccagctggcggggcctgtggaaaa	Protospacer
************************

14. spacer 2.4|3656|42|NZ_CP040459|CRISPRCasFinder matches to NZ_CP040459 (Pseudomonas stutzeri strain PheN2 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

taccgcaatctgttgtcgatactgccgcaatttgatgtcgca	CRISPR spacer
taccgcaatctgttgtcgatactgccgcaatttgatgtcgca	Protospacer
******************************************

15. spacer 2.6|3609|49|NZ_CP040459|PILER-CR matches to NZ_CP040459 (Pseudomonas stutzeri strain PheN2 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

ccagctggcggggcctgtggaaaacagccgcaatctgttgtcgttgcta	CRISPR spacer
ccagctggcggggcctgtggaaaacagccgcaatctgttgtcgttgcta	Protospacer
*************************************************

16. spacer 2.7|3678|44|NZ_CP040459|PILER-CR matches to NZ_CP040459 (Pseudomonas stutzeri strain PheN2 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

tgccgcaatttgatgtcgcattaccgccagatgttgtcgcaaac	CRISPR spacer
tgccgcaatttgatgtcgcattaccgccagatgttgtcgcaaac	Protospacer
********************************************

17. spacer 1.6|3192|23|NZ_CP040459|CRT matches to NZ_LR134451 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 9, complete sequence) position: , mismatch: 2, identity: 0.913

atcggcgtggctactcccgcacg	CRISPR spacer
atcggcggcgctactcccgcacg	Protospacer
*******  **************

18. spacer 1.2|3018|25|NZ_CP040459|CRT matches to NZ_CP050092 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b6, complete sequence) position: , mismatch: 3, identity: 0.88

accgctgcgtcagcggcgatctcga	CRISPR spacer
accgtggcgtcagcggcgatctcgg	Protospacer
****. ******************.

19. spacer 1.2|3018|25|NZ_CP040459|CRT matches to NZ_CP050081 (Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b5, complete sequence) position: , mismatch: 3, identity: 0.88

accgctgcgtcagcggcgatctcga	CRISPR spacer
accgtggcgtcagcggcgatctcgg	Protospacer
****. ******************.

20. spacer 1.2|3018|25|NZ_CP040459|CRT matches to NZ_CP050104 (Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b2, complete sequence) position: , mismatch: 3, identity: 0.88

accgctgcgtcagcggcgatctcga	CRISPR spacer
accgtggcgtcagcggcgatctcgg	Protospacer
****. ******************.

21. spacer 1.2|3018|25|NZ_CP040459|CRT matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 3, identity: 0.88

accgctgcgtcagcggcgatctcga	CRISPR spacer
tccgctgcggcaacggcgatctcga	Protospacer
 ******** **.************

22. spacer 1.2|3018|25|NZ_CP040459|CRT matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 3, identity: 0.88

accgctgcgtcagcggcgatctcga	CRISPR spacer
tccgctgcggcaacggcgatctcga	Protospacer
 ******** **.************

23. spacer 1.2|3018|25|NZ_CP040459|CRT matches to NZ_CP021033 (Rhizobium sp. NXC14 plasmid pRspNXC14c, complete sequence) position: , mismatch: 3, identity: 0.88

accgctgcgtcagcggcgatctcga	CRISPR spacer
accgtggcgtcagcggcgatctcgg	Protospacer
****. ******************.

24. spacer 1.2|3018|25|NZ_CP040459|CRT matches to NZ_CP025013 (Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence) position: , mismatch: 3, identity: 0.88

accgctgcgtcagcggcgatctcga	CRISPR spacer
accgtggcgtcagcggcgatctcgg	Protospacer
****. ******************.

25. spacer 1.2|3018|25|NZ_CP040459|CRT matches to NZ_CP049731 (Rhizobium leguminosarum strain A1 plasmid pRL12, complete sequence) position: , mismatch: 3, identity: 0.88

accgctgcgtcagcggcgatctcga	CRISPR spacer
accgtggcgtcagcggcgatctcgg	Protospacer
****. ******************.

26. spacer 1.2|3018|25|NZ_CP040459|CRT matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 3, identity: 0.88

accgctgcgtcagcggcgatctcga	CRISPR spacer
tccgctgcggcaacggcgatctcga	Protospacer
 ******** **.************

27. spacer 1.2|3018|25|NZ_CP040459|CRT matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 3, identity: 0.88

accgctgcgtcagcggcgatctcga	CRISPR spacer
tccgctgcggcaacggcgatctcga	Protospacer
 ******** **.************

28. spacer 1.2|3018|25|NZ_CP040459|CRT matches to NZ_CP025507 (Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvA, complete sequence) position: , mismatch: 3, identity: 0.88

accgctgcgtcagcggcgatctcga	CRISPR spacer
accgtggcgtcagcggcgatctcgg	Protospacer
****. ******************.

29. spacer 1.2|3018|25|NZ_CP040459|CRT matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.88

accgctgcgtcagcggcgatctcga	CRISPR spacer
tccgctgcggcaacggcgatctcga	Protospacer
 ******** **.************

30. spacer 1.2|3018|25|NZ_CP040459|CRT matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 3, identity: 0.88

accgctgcgtcagcggcgatctcga	CRISPR spacer
tccgctgcggcaacggcgatctcga	Protospacer
 ******** **.************

31. spacer 1.2|3018|25|NZ_CP040459|CRT matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 3, identity: 0.88

accgctgcgtcagcggcgatctcga	CRISPR spacer
tccgctgcggcaacggcgatctcga	Protospacer
 ******** **.************

32. spacer 1.2|3018|25|NZ_CP040459|CRT matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 3, identity: 0.88

accgctgcgtcagcggcgatctcga	CRISPR spacer
tccgctgcggcaacggcgatctcga	Protospacer
 ******** **.************

33. spacer 1.2|3018|25|NZ_CP040459|CRT matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 3, identity: 0.88

accgctgcgtcagcggcgatctcga	CRISPR spacer
tccgctgcggcaacggcgatctcga	Protospacer
 ******** **.************

34. spacer 1.2|3018|25|NZ_CP040459|CRT matches to NZ_CP050109 (Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b2, complete sequence) position: , mismatch: 3, identity: 0.88

accgctgcgtcagcggcgatctcga	CRISPR spacer
accgtggcgtcagcggcgatctcgg	Protospacer
****. ******************.

35. spacer 1.2|3018|25|NZ_CP040459|CRT matches to NZ_CP030761 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.88

accgctgcgtcagcggcgatctcga	CRISPR spacer
accgtggcgtcagcggcgatctcgg	Protospacer
****. ******************.

36. spacer 1.2|3018|25|NZ_CP040459|CRT matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.88

accgctgcgtcagcggcgatctcga	CRISPR spacer
tccgctgcggcaacggcgatctcga	Protospacer
 ******** **.************

37. spacer 1.2|3018|25|NZ_CP040459|CRT matches to NZ_CP054028 (Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence) position: , mismatch: 3, identity: 0.88

accgctgcgtcagcggcgatctcga	CRISPR spacer
accgtggcgtcagcggcgatctcgg	Protospacer
****. ******************.

38. spacer 1.2|3018|25|NZ_CP040459|CRT matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.88

accgctgcgtcagcggcgatctcga	CRISPR spacer
tccgctgcggcaacggcgatctcga	Protospacer
 ******** **.************

39. spacer 1.2|3018|25|NZ_CP040459|CRT matches to NZ_CP022666 (Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR1, complete sequence) position: , mismatch: 3, identity: 0.88

accgctgcgtcagcggcgatctcga	CRISPR spacer
accgtggcgtcagcggcgatctcgg	Protospacer
****. ******************.

40. spacer 1.2|3018|25|NZ_CP040459|CRT matches to NZ_CP021820 (Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.88

accgctgcgtcagcggcgatctcga	CRISPR spacer
tccgctgcggcaacggcgatctcga	Protospacer
 ******** **.************

41. spacer 1.2|3018|25|NZ_CP040459|CRT matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.88

accgctgcgtcagcggcgatctcga	CRISPR spacer
tccgctgcggcaacggcgatctcga	Protospacer
 ******** **.************

42. spacer 1.2|3018|25|NZ_CP040459|CRT matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 3, identity: 0.88

accgctgcgtcagcggcgatctcga	CRISPR spacer
tccgctgcggcaacggcgatctcga	Protospacer
 ******** **.************

43. spacer 1.2|3018|25|NZ_CP040459|CRT matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.88

accgctgcgtcagcggcgatctcga	CRISPR spacer
tccgctgcggcaacggcgatctcga	Protospacer
 ******** **.************

44. spacer 1.2|3018|25|NZ_CP040459|CRT matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.88

accgctgcgtcagcggcgatctcga	CRISPR spacer
tccgctgcggcaacggcgatctcga	Protospacer
 ******** **.************

45. spacer 1.2|3018|25|NZ_CP040459|CRT matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.88

accgctgcgtcagcggcgatctcga	CRISPR spacer
tccgctgcggcaacggcgatctcga	Protospacer
 ******** **.************

46. spacer 1.2|3018|25|NZ_CP040459|CRT matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.88

accgctgcgtcagcggcgatctcga	CRISPR spacer
tccgctgcggcaacggcgatctcga	Protospacer
 ******** **.************

47. spacer 1.2|3018|25|NZ_CP040459|CRT matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 3, identity: 0.88

accgctgcgtcagcggcgatctcga	CRISPR spacer
tccgctgcggcaacggcgatctcga	Protospacer
 ******** **.************

48. spacer 1.2|3018|25|NZ_CP040459|CRT matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 3, identity: 0.88

accgctgcgtcagcggcgatctcga	CRISPR spacer
tccgctgcggcaacggcgatctcga	Protospacer
 ******** **.************

49. spacer 1.2|3018|25|NZ_CP040459|CRT matches to NZ_CP054032 (Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence) position: , mismatch: 3, identity: 0.88

accgctgcgtcagcggcgatctcga	CRISPR spacer
accgtggcgtcagcggcgatctcgg	Protospacer
****. ******************.

50. spacer 1.2|3018|25|NZ_CP040459|CRT matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 3, identity: 0.88

accgctgcgtcagcggcgatctcga	CRISPR spacer
tccgctgcggcaacggcgatctcga	Protospacer
 ******** **.************

51. spacer 1.2|3018|25|NZ_CP040459|CRT matches to NZ_CP053206 (Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1D, complete sequence) position: , mismatch: 3, identity: 0.88

accgctgcgtcagcggcgatctcga	CRISPR spacer
accgtggcgtcagcggcgatctcgg	Protospacer
****. ******************.

52. spacer 1.2|3018|25|NZ_CP040459|CRT matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 3, identity: 0.88

accgctgcgtcagcggcgatctcga	CRISPR spacer
tccgctgcggcaacggcgatctcga	Protospacer
 ******** **.************

53. spacer 1.2|3018|25|NZ_CP040459|CRT matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 3, identity: 0.88

accgctgcgtcagcggcgatctcga	CRISPR spacer
tccgctgcggcaacggcgatctcga	Protospacer
 ******** **.************

54. spacer 1.2|3018|25|NZ_CP040459|CRT matches to NZ_CP050086 (Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b7, complete sequence) position: , mismatch: 3, identity: 0.88

accgctgcgtcagcggcgatctcga	CRISPR spacer
accgtggcgtcagcggcgatctcgg	Protospacer
****. ******************.

55. spacer 1.3|3063|23|NZ_CP040459|CRT matches to MH576962 (Streptomyces phage Satis, complete genome) position: , mismatch: 3, identity: 0.87

gcccgtgttttgtgcgcccctgt	CRISPR spacer
tcccgtgttgtgtgcgcccctgc	Protospacer
 ******** ************.

56. spacer 1.3|3063|23|NZ_CP040459|CRT matches to MH576962 (Streptomyces phage Satis, complete genome) position: , mismatch: 3, identity: 0.87

gcccgtgttttgtgcgcccctgt	CRISPR spacer
tcccgtgttgtgtgcgcccctgc	Protospacer
 ******** ************.

57. spacer 1.3|3063|23|NZ_CP040459|CRT matches to MK620894 (Streptomyces phage Kradal, complete genome) position: , mismatch: 3, identity: 0.87

gcccgtgttttgtgcgcccctgt	CRISPR spacer
tcccgtgttgtgtgcgcccctgc	Protospacer
 ******** ************.

58. spacer 1.3|3063|23|NZ_CP040459|CRT matches to MK620894 (Streptomyces phage Kradal, complete genome) position: , mismatch: 3, identity: 0.87

gcccgtgttttgtgcgcccctgt	CRISPR spacer
tcccgtgttgtgtgcgcccctgc	Protospacer
 ******** ************.

59. spacer 2.3|3609|24|NZ_CP040459|CRISPRCasFinder matches to NZ_CP036260 (Sporomusa termitida strain DSM 4440 plasmid pSPTER, complete sequence) position: , mismatch: 3, identity: 0.875

ccagctggcggggcctgtggaaaa	CRISPR spacer
actgctggcggtgcctgtggaaaa	Protospacer
 * ******** ************

60. spacer 1.2|3018|25|NZ_CP040459|CRT matches to NZ_CP006370 (Aureimonas sp. AU20 plasmid pAU20c, complete sequence) position: , mismatch: 4, identity: 0.84

accgctgcgtcagcggcgatctcga	CRISPR spacer
tcggctgcgacagcggcgatctcgg	Protospacer
 * ****** **************.

61. spacer 1.2|3018|25|NZ_CP040459|CRT matches to CP006880 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence) position: , mismatch: 4, identity: 0.84

accgctgcgtcagcggcgatctcga	CRISPR spacer
tcgcctgcgtcaccggcgatctcga	Protospacer
 *  ******** ************

62. spacer 1.2|3018|25|NZ_CP040459|CRT matches to MH051254 (Mycobacterium phage Jabiru, complete genome) position: , mismatch: 4, identity: 0.84

accgctgcgtcagcggcgatctcga	CRISPR spacer
cccgctgcgtcagcggtgatctggt	Protospacer
 ***************.***** *

63. spacer 1.2|3018|25|NZ_CP040459|CRT matches to NC_028802 (Mycobacterium phage UnionJack, complete genome) position: , mismatch: 4, identity: 0.84

accgctgcgtcagcggcgatctcga	CRISPR spacer
tccgctgcgtcagcggtgatctggt	Protospacer
 ***************.***** *

64. spacer 1.2|3018|25|NZ_CP040459|CRT matches to MN586060 (Mycobacterium phage PetterN, complete genome) position: , mismatch: 4, identity: 0.84

accgctgcgtcagcggcgatctcga	CRISPR spacer
cccgctgcgtcagcggtgatctggt	Protospacer
 ***************.***** *

65. spacer 1.2|3018|25|NZ_CP040459|CRT matches to MK494091 (Mycobacterium phage Scorpia, complete genome) position: , mismatch: 4, identity: 0.84

accgctgcgtcagcggcgatctcga	CRISPR spacer
cccgctgcgtcagcggtgatctggt	Protospacer
 ***************.***** *

66. spacer 1.2|3018|25|NZ_CP040459|CRT matches to JX042578 (Mycobacteriophage ElTiger69, complete genome) position: , mismatch: 4, identity: 0.84

accgctgcgtcagcggcgatctcga	CRISPR spacer
cccgctgcgtcagcggtgatctggt	Protospacer
 ***************.***** *

67. spacer 1.2|3018|25|NZ_CP040459|CRT matches to MG099938 (Mycobacterium phage Archetta, complete genome) position: , mismatch: 4, identity: 0.84

accgctgcgtcagcggcgatctcga	CRISPR spacer
tccgctgcgtcagcggtgatctggt	Protospacer
 ***************.***** *

68. spacer 1.2|3018|25|NZ_CP040459|CRT matches to MH338241 (Mycobacterium phage Tarynearal, complete genome) position: , mismatch: 4, identity: 0.84

accgctgcgtcagcggcgatctcga	CRISPR spacer
tccgctgcgtcagcggtgatctggt	Protospacer
 ***************.***** *

69. spacer 1.2|3018|25|NZ_CP040459|CRT matches to MN586062 (Mycobacterium phage Lev2, complete genome) position: , mismatch: 4, identity: 0.84

accgctgcgtcagcggcgatctcga	CRISPR spacer
tccgctgcgtcagcggtgatctggt	Protospacer
 ***************.***** *

70. spacer 1.2|3018|25|NZ_CP040459|CRT matches to NC_022973 (Mycobacterium phage Conspiracy, complete genome) position: , mismatch: 4, identity: 0.84

accgctgcgtcagcggcgatctcga	CRISPR spacer
tccgctgcgtcagcggtgatctggt	Protospacer
 ***************.***** *

71. spacer 1.2|3018|25|NZ_CP040459|CRT matches to KT246486 (Mycobacterium phage Chadwick, complete genome) position: , mismatch: 4, identity: 0.84

accgctgcgtcagcggcgatctcga	CRISPR spacer
cccgctgcgtcagcggtgatctggt	Protospacer
 ***************.***** *

72. spacer 1.2|3018|25|NZ_CP040459|CRT matches to KF493882 (Mycobacterium phage Jovo, complete genome) position: , mismatch: 4, identity: 0.84

accgctgcgtcagcggcgatctcga	CRISPR spacer
tccgctgcgtcagcggtgatctggt	Protospacer
 ***************.***** *

73. spacer 1.2|3018|25|NZ_CP040459|CRT matches to MH338235 (Mycobacterium phage Dublin, complete genome) position: , mismatch: 4, identity: 0.84

accgctgcgtcagcggcgatctcga	CRISPR spacer
tccgctgcgtcagcggtgatctggt	Protospacer
 ***************.***** *

74. spacer 1.2|3018|25|NZ_CP040459|CRT matches to NC_028960 (Mycobacterium phage Theia, complete genome) position: , mismatch: 4, identity: 0.84

accgctgcgtcagcggcgatctcga	CRISPR spacer
tccgctgcgtcagcggtgatctggt	Protospacer
 ***************.***** *

75. spacer 1.2|3018|25|NZ_CP040459|CRT matches to MG099944 (Mycobacterium phage ForGetIt, complete genome) position: , mismatch: 4, identity: 0.84

accgctgcgtcagcggcgatctcga	CRISPR spacer
tccgctgcgtcagcggtgatctggt	Protospacer
 ***************.***** *

76. spacer 1.2|3018|25|NZ_CP040459|CRT matches to MH020239 (Mycobacterium phage Naca, complete genome) position: , mismatch: 4, identity: 0.84

accgctgcgtcagcggcgatctcga	CRISPR spacer
cccgctgcgtcagcggtgatctggt	Protospacer
 ***************.***** *

77. spacer 1.2|3018|25|NZ_CP040459|CRT matches to JN083853 (Mycobacterium phage Airmid, complete genome) position: , mismatch: 4, identity: 0.84

accgctgcgtcagcggcgatctcga	CRISPR spacer
tccgctgcgtcagcggtgatctggt	Protospacer
 ***************.***** *

78. spacer 1.2|3018|25|NZ_CP040459|CRT matches to JN083852 (Mycobacterium virus Benedict, complete genome) position: , mismatch: 4, identity: 0.84

accgctgcgtcagcggcgatctcga	CRISPR spacer
cccgctgcgtcagcggtgatctggt	Protospacer
 ***************.***** *

79. spacer 1.2|3018|25|NZ_CP040459|CRT matches to NC_012811 (Methylorubrum extorquens AM1 megaplasmid, complete sequence) position: , mismatch: 5, identity: 0.8

accgctgcgtcagcggcgatctcga	CRISPR spacer
cacgctgcgtcagccgcgatctctg	Protospacer
  ************ ******** .

80. spacer 2.5|3518|71|NZ_CP040459|PILER-CR matches to NZ_CP040459 (Pseudomonas stutzeri strain PheN2 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.845

tgagcagtagcgttggccttccgataccgcaatttgttgtcgttgatgggcgggagctgg	CRISPR spacer
tgagcagtagcgttggccttccgataccgcaatttgttgtcgttgatgggcgggagctgg	Protospacer
************************************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 7038

Acidithiobacillus_phage(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138299178.1\|1883_2831_-	replication initiation protein	NA	NA	NA	NA
WP_138299179.1\|3974_4382_-	hypothetical protein	NA	NA	NA	NA
WP_138299180.1\|4750_6265_+\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	3.0e-147	53.3
WP_019437637.1\|6282_7038_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	1.9e-73	54.8

DBSCAN-SWA_2

18280 : 20568

Acidithiobacillus_phage(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138299180.1\|18280_19795_+\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	3.0e-147	53.3
WP_019437637.1\|19812_20568_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	1.9e-73	54.8

DBSCAN-SWA_3

24741 : 25182

uncultured_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138299199.1\|24741_25182_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A218MND2	uncultured_virus	1.7e-10	38.0

DBSCAN-SWA_4

29416 : 36326

Pseudomonas_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138299204.1\|29416_30901_+	DEAD/DEAH box helicase	A0A0H5ARP5	Pseudomonas_phage	8.6e-123	48.3
WP_138299205.1\|31304_31589_+	HU family DNA-binding protein	A3E2K9	Sodalis_phage	6.6e-16	52.8
WP_138299206.1\|31585_31765_+	hypothetical protein	NA	NA	NA	NA
WP_138299207.1\|31846_32293_+	hypothetical protein	NA	NA	NA	NA
WP_138299208.1\|32313_33759_+	ATP-dependent helicase	A0A1S5R1M3	Pseudomonas_phage	2.5e-50	33.7
WP_138299209.1\|33775_34576_+	hypothetical protein	NA	NA	NA	NA
WP_138299210.1\|34897_35251_+	hypothetical protein	NA	NA	NA	NA
WP_138299211.1\|35345_36326_+	AAA domain-containing protein	L7TKP0	Rhizobium_phage	1.5e-30	35.3

DBSCAN-SWA_5

42792 : 45080

Acidithiobacillus_phage(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_019437637.1\|42792_43548_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	1.9e-73	54.8
WP_138299180.1\|43565_45080_-\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	3.0e-147	53.3

DBSCAN-SWA_6

54058 : 59514

Pseudomonas_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138299224.1\|54058_54577_+	single-stranded DNA-binding protein	A0A0S2SY36	Pseudomonas_phage	4.4e-50	66.2
WP_138299225.1\|54642_55728_+	recombinase RecT	I6S789	Marinomonas_phage	1.1e-39	42.3
WP_138299226.1\|55730_55967_+	hypothetical protein	NA	NA	NA	NA
WP_138299227.1\|56104_56734_+	hypothetical protein	A0A1W6DXE2	Sphingobium_phage	2.0e-28	40.3
WP_138299228.1\|56842_57022_+	hypothetical protein	NA	NA	NA	NA
WP_138299229.1\|57002_57506_+	hypothetical protein	NA	NA	NA	NA
WP_138299230.1\|57502_57763_+	hypothetical protein	NA	NA	NA	NA
WP_138299231.1\|57883_58474_+	hypothetical protein	NA	NA	NA	NA
WP_138299232.1\|58479_59514_+	DNA recombination protein	I4AZN3	Saccharomonospora_phage	1.6e-19	28.1

DBSCAN-SWA_7

77221 : 78514

unidentified_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_017341082.1\|77221_78514_+	group II intron reverse transcriptase/maturase	H7BVN7	unidentified_phage	6.3e-21	26.6

DBSCAN-SWA_8

85204 : 90769

Acidithiobacillus_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138299253.1\|85204_85879_+	NERD domain-containing protein	A0A2R2ZH57	Clostridioides_phage	9.5e-13	36.1
WP_138299254.1\|85866_86085_-	hypothetical protein	NA	NA	NA	NA
WP_138299255.1\|86151_86913_-	DUF1845 family protein	NA	NA	NA	NA
WP_079384029.1\|86912_87092_+	hypothetical protein	NA	NA	NA	NA
WP_019437637.1\|87041_87797_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	1.9e-73	54.8
WP_138299180.1\|87814_89329_-\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	3.0e-147	53.3
WP_138299256.1\|90064_90769_+	DUF551 domain-containing protein	A0A0A1IUG6	Pseudomonas_phage	4.8e-07	67.7

DBSCAN-SWA_9

95511 : 101911

Vibrio_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138299264.1\|95511_97017_-	ATP-dependent helicase	A0A2I7R5Z1	Vibrio_phage	5.4e-48	31.6
WP_138299265.1\|98191_98623_-	hypothetical protein	NA	NA	NA	NA
WP_020308217.1\|98878_99139_-	hypothetical protein	NA	NA	NA	NA
WP_138299266.1\|99181_101911_-	class I SAM-dependent DNA methyltransferase	Q6NE04	Leptospira_phage	1.2e-239	46.2

DBSCAN-SWA_10

110274 : 111372

Clostridium_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_044314870.1\|110274_111372_+	AAA family ATPase	E2ELL2	Clostridium_phage	1.8e-08	30.6

DBSCAN-SWA_11

114647 : 121631

Pseudomonas_phage(25.0%)

integrase

attL 106271:106283|attR 121301:121313

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
106271:106283	attL	NA	NA	NA	NA
WP_011805433.1\|114647_116069_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	2.1e-22	29.0
WP_138299281.1\|116236_117130_+	plasmid replication/partition related protein	A0A1B1IPY1	uncultured_Mediterranean_phage	7.9e-15	31.0
WP_138299282.1\|117385_117745_+	H-NS histone	NA	NA	NA	NA
WP_138299283.1\|118248_119019_+	hypothetical protein	NA	NA	NA	NA
WP_138299284.1\|119173_120364_-\|integrase	site-specific integrase	A0A077KET4	Ralstonia_phage	7.4e-77	40.7
WP_138299285.1\|120360_120729_-	hypothetical protein	NA	NA	NA	NA
WP_138299286.1\|120896_121631_-	serine/threonine protein phosphatase	A0A291L9W7	Bordetella_phage	1.5e-40	43.1
121301:121313	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP040460

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP040459

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection