CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP040348	Collinsella aerofaciens strain P10wA7 chromosome, complete genome	3 crisprs	csa3,DEDDh,WYL,DinG	0	0	0	0

Cas Category Instructions

Results visualization

1. NZ_CP040348

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP040348_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040348_1

1548588-1548768

Orphan

Consensus_repeat	Method
ATCTCGATCTGTAACATCTA	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP040348_1

>merge|NZ_CP040348|1|1548588-1548768|PILER-CR
ATCTCGATCTGTAACAGCTACTCGGAAAAAACGGCCCCAGCTGTTACAGATTGAGACATACCGGCCCCTCCCCTTGGGTTTATCTCAATCTGTAACATCTAGCAGCTGAAATTCACCTTTGGTGTTACAGATTTAGATGAAATGGTTAGCTCAGCGGAACCGTCTCGATCTGTAACATCTA

>NZ_CP040348|1|1|1548588-1548768|PILER-CR
ATCTCGATCTGTAACAGCTA	CTCGGAAAAAACGGCCCCAGCTGTTACAGATTGAGACATACCGGCCCCTCCCCTTGGGTTT
ATCTCAATCTGTAACATCTA	GCAGCTGAAATTCACCTTTGGTGTTACAGATTTAGATGAAATGGTTAGCTCAGCGGAACC
GTCTCGATCTGTAACATCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040348.1\|WP_138113455.1\|1557141_1558155_+\|polyprenyl-synthetase-family-protein	unknown	unknown	gnl\|CDD\|376322
NZ_CP040348.1\|WP_138113439.1\|1538698_1539187_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040348.1\|WP_055285612.1\|1553616_1554336_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225099
NZ_CP040348.1\|WP_138113441.1\|1540647_1541610_+\|UDP-N-acetylmuramate-dehydrogenase	unknown	unknown	gnl\|CDD\|237553
NZ_CP040348.1\|WP_138113457.1\|1559650_1561831_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|185628
NZ_CP040348.1\|WP_117746799.1\|1551993_1553310_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|379175
NZ_CP040348.1\|WP_138113447.1\|1546192_1548487_+\|glycogen/starch/alpha-glucan-family-phosphorylase	unknown	unknown	gnl\|CDD\|340853
NZ_CP040348.1\|WP_035137743.1\|1537194_1537908_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225099
NZ_CP040348.1\|WP_138113453.1\|1551051_1551906_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_CP040348.1\|WP_138113461.1\|1564713_1567098_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	unknown	unknown	gnl\|CDD\|236585
NZ_CP040348.1\|WP_138113443.1\|1541831_1543037_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227278
NZ_CP040348.1\|WP_138113451.1\|1550212_1551052_-\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP040348.1\|WP_055310491.1\|1539435_1540464_-\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NZ_CP040348.1\|WP_138113437.1\|1537892_1538660_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225099
NZ_CP040348.1\|WP_138113445.1\|1543303_1544365_+\|UDP-glucose-4-epimerase-GalE	unknown	unknown	gnl\|CDD\|177883
NZ_CP040348.1\|WP_055285651.1\|1558314_1559199_+\|peptidoglycan-binding-protein	unknown	unknown	gnl\|CDD\|366659
NZ_CP040348.1\|WP_138113435.1\|1535885_1537001_-\|SIS-domain-containing-protein	unknown	unknown	gnl\|CDD\|223526
NZ_CP040348.1\|WP_138114417.1\|1544585_1546091_+\|4-alpha-glucanotransferase	unknown	unknown	gnl\|CDD\|237738
NZ_CP040348.1\|WP_138113459.1\|1562015_1563905_-\|carbon-starvation-protein-A	unknown	unknown	gnl\|CDD\|376816
NZ_CP040348.1\|WP_138113449.1\|1548944_1550144_-\|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC	unknown	unknown	gnl\|CDD\|236947

Protein	Function_ID	Function_description	E-value
NZ_CP040348.1\|WP_138113455.1\|1557141_1558155_+\|polyprenyl-synthetase-family-protein	gnl\|CDD\|376322	pfam00348, polyprenyl_synt, Polyprenyl synthetase.	6.73223e-76
NZ_CP040348.1\|WP_117746799.1\|1551993_1553310_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|379175	pfam13416, SBP_bac_8, Bacterial extracellular solute-binding protein. This family includes bacterial extracellular solute-binding proteins.	1.05389e-32
NZ_CP040348.1\|WP_138113441.1\|1540647_1541610_+\|UDP-N-acetylmuramate-dehydrogenase	gnl\|CDD\|237553	PRK13905, murB, UDP-N-acetylmuramate dehydrogenase.	2.14135e-157
NZ_CP040348.1\|WP_138113457.1\|1559650_1561831_-\|hypothetical-protein	gnl\|CDD\|185628	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional.	2.04616e-05
NZ_CP040348.1\|WP_055285612.1\|1553616_1554336_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	3.89826e-49
NZ_CP040348.1\|WP_138113447.1\|1546192_1548487_+\|glycogen/starch/alpha-glucan-family-phosphorylase	gnl\|CDD\|340853	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins. This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	0
NZ_CP040348.1\|WP_035137743.1\|1537194_1537908_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	5.83306e-61
NZ_CP040348.1\|WP_138113453.1\|1551051_1551906_-\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	7.70396e-62
NZ_CP040348.1\|WP_138113461.1\|1564713_1567098_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	gnl\|CDD\|236585	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD.	6.46052e-165
NZ_CP040348.1\|WP_138113443.1\|1541831_1543037_-\|hypothetical-protein	gnl\|CDD\|227278	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning].	8.91196e-20
NZ_CP040348.1\|WP_138113451.1\|1550212_1551052_-\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	3.5838e-63
NZ_CP040348.1\|WP_055310491.1\|1539435_1540464_-\|LacI-family-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	1.44946e-97
NZ_CP040348.1\|WP_138113437.1\|1537892_1538660_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	1.09952e-55
NZ_CP040348.1\|WP_138113445.1\|1543303_1544365_+\|UDP-glucose-4-epimerase-GalE	gnl\|CDD\|177883	PLN02240, PLN02240, UDP-glucose 4-epimerase.	0
NZ_CP040348.1\|WP_055285651.1\|1558314_1559199_+\|peptidoglycan-binding-protein	gnl\|CDD\|366659	pfam01471, PG_binding_1, Putative peptidoglycan binding domain. This domain is composed of three alpha helices. This domain is found at the N or C-terminus of a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins. The domain is found to bind peptidoglycan experimentally.	1.00796e-11
NZ_CP040348.1\|WP_138113435.1\|1535885_1537001_-\|SIS-domain-containing-protein	gnl\|CDD\|223526	COG0449, GlmS, Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane].	1.72976e-36
NZ_CP040348.1\|WP_138114417.1\|1544585_1546091_+\|4-alpha-glucanotransferase	gnl\|CDD\|237738	PRK14508, PRK14508, 4-alpha-glucanotransferase; Provisional.	0
NZ_CP040348.1\|WP_138113459.1\|1562015_1563905_-\|carbon-starvation-protein-A	gnl\|CDD\|376816	pfam02554, CstA, Carbon starvation protein CstA. This family consists of Carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilisation.	4.86636e-144
NZ_CP040348.1\|WP_138113449.1\|1548944_1550144_-\|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC	gnl\|CDD\|236947	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC.	1.05311e-172

>NZ_CP040348.1|WP_138113447.1|1546192_1548487_+|glycogen/starch/alpha-glucan-family-phosphorylase
MKQPITGENMPQINLMELAEQSFGTSLEQLDDRRIYKLLVKLVQERSAACPLNNGKKKLYYISAEFLIGKLLINNMIDLGIYDEVKDQLTAAGHDLNKIEEFEVEPSLGNGGLGRLAACFLDSIATLGLTGDGVGLNYHYGLFRQRFVDNQQKAVPDEWLGEQDILVDDDRSYTVEFGDFAVTSKLVNIDVPGYGQPTKNRLRLFDLASVDDGLVPGSSIDFDKTEIAKNLTLFLYPDDSDEQGRLLRIYQEYFMVSNAAQLLIDEAVERGSNLHDLADYAVVQINDTHPTMVIPELIRLLTTEHDIEFDEAVTIVRSMVAYTNHTILAEALEKWPLASLQKVSPAIADIIVKLDEIAKAEHDDPRVAIIDEHDTVHMAHMDIHFGFSINGVAALHTKILEDTELHPFYEIYPEKFSNKTNGITFRRWIHGANPALASLLDDVIGTDWRSTGDLSKLAKFADDKDVLERLAATKVEAKTIMRQFMALEQGVTIPSNAIIDVQVKRIHEYKRQQMLALYIIWKYLDIKNGNRPKHPVTIIFGGKAAPAYTIAQDIIHLILTLSQWIANDPDVAPYLQVVMIENYNVTAAERVIPAADISEQISLASKEASGTSNMKFMLNGALTLCTLDGANVEIAELVGDENIYTFGASSKQVEQLYANGTYDAGMLYRKPGIKLLVDFITNPAFMATGNAERLQRLHDDIKGKDWFMALLDIEEYIQTKERVLADYEDQDAWMRKTLINIANAGTFSSDRTISQYNDEIWHLN
>NZ_CP040348.1|WP_138114417.1|1544585_1546091_+|4-alpha-glucanotransferase
MERASGVLMPVSSLPGPYGIGGFGWNAYDFVDFLASCKQHYWQILPLTTTSYGDSPYQSFSARAGNPNFIDFAELIEAGYLEQRDIDGVYLGSDPSNVDYGAIFGGRRQILDRAAERFAADKPADFDDFIQANEDWLIPYCEFMTVKEECGLKAFWEWPAELRTRGEASAKVCADHPARMLYHQMTQYFFDRQWNRLKAYANERDILIIGDLPIYVSRDSVEMWATPELFKIDAAGNPVSVAGTPPDQFSATGQYWGNPIYDWDAMESDGFSWWEGRIRAALDMYDVIRLDHFRGFEAYWEVPFSSPDSSYGSWTQGPGLKFFKTLEEKLGTLPIIAEDLGFLTPGVIDMRDNSGFPGMKILQFAFEGTNSYYLPHNYIANTVAYVGTHDNETARGWFEGTATPRQREQAALYTHQQAGEPMADALNRTIAASVSDTCIYTMQDLLNLGNEARINTPATLGGNWTWRMLDGAITRELEHKLTDWTETYFRIPSEAEIELPQ
>NZ_CP040348.1|WP_138113445.1|1543303_1544365_+|UDP-glucose-4-epimerase-GalE
MSKALDPKDTCVLVTGGAGFIGSHTVVQLLEGGYQVVIVDDLSNSSAVAVDRVKTIVGDEAAKNLTFYEANVLDRDAMNKIFDTHQIDRVIHFAGFKAVGESVSKPVEYYHNNIENTLVLIDVMRSHGCKSIIFSSSSTVYGDPNNPPVTEEDPKKPATNPYGWTKWMIEQILMDVHTADPEWDVVLLRYFNPIGAHPSGLIGEDPKGIPNNLVPYVAQVAVGKLEAVQVFGNDYPTPDGTGVRDYIHVCDLASGHVAALNWMNGKTGVEIFNLGTGTGTSVLEVVAAFSKACGKELPYVIRERRAGDIAANWCDASKAERMMGWKAQYDIADMCRDSWNWQSHNPNGFADAE
>NZ_CP040348.1|WP_138113443.1|1541831_1543037_-|hypothetical-protein
MSPNSDSILSQELSRRTALKALFGAASAAVLFGLPARAHAAEASKETTDKLNAAQAQLDEVQAQLDSIANEYAALANKNAQTLNDIENVQGKIDDTQAQIDEKKAELKKKRNDLSDRVAASYKSGGTNILSLLLASGSFEELVANAHYVEKINKSDRDAIEDIQTIQEELDAQKTELESQKADLEKLKDQQTAQMQDMQAKQQEVQTVLNGLSDDVKELMAQRDSEILAAAQAEEAARKAAAAAAAANKNNSYSGGSSSGGGSYAPGTPQQNAGSGKQQAVVNACYSTPSPGQNWCAAWVTNVFRNAGVGYFGGNACDMFNAWCYSSDRSALQVGMIVADSSHSGTGAPGLIYGHVGIYVGGGIVMSNEGAITSKSLDSFISFYGTGSGVRWGWLGGVALS
>NZ_CP040348.1|WP_138113441.1|1540647_1541610_+|UDP-N-acetylmuramate-dehydrogenase
MHENDFFNEDLLCALAGVAGEDNVLMSEPMREHTTFKIGGPADVFVTPDTEQGLVATLDTCYRCDLPLTIVGNGSDLLVGDKGIRGVVVALGEGLSDITVDGTHVTAAAGALLSDVAAAAAEAGLTGMEPISGIPGSVGGACYMNAGAYGACMADVLESVRVYKPARQLDDGTRGSGNIIEFDADELNLGYRKSRIADDGFIVLSATFNLAPGNAAMIKADMDDYRQRREDKQPLDMPSAGSTFKRPEGHFAGKLIMDAGLRGHAVGGAQVSEKHCGFIVNADHATAADVDELIRDIQAKVKEQFDVDLEPEVHRVGEFL
>NZ_CP040348.1|WP_055310491.1|1539435_1540464_-|LacI-family-transcriptional-regulator
MANKVTLKQIAQEVGLSPSSVSLVLNNRPCRISEENRKLIKEVAARNHYVPNQIARSLVMRESRTLGLIVPNIESRFFASLAGSLEKRCREDGYALFITSSGGSADDDLELLRQLVTRGVDGVFLVVGDEFSDDRALREEVSHLPIPAVMVDRAIEGLECDKVMFDHEMGGYMATRYLIEQGHRRIACLVNARRSNTGRKRLAGYERALREVGLPIDARLEFESEYYIPSAYEASEAVLATDATAVFASSDNIALGLLKRLHEMGKSIPGDISVVSYDNSAADVLFEPALTAIEQDPGILAEHAFGCMSKRLAGRGGRRAEEVVLEPALIVKGSVLDLTECS
>NZ_CP040348.1|WP_138113439.1|1538698_1539187_-|hypothetical-protein
MGLFKKKNPQDAFDPDVFTITDTILDPPRFTFLPAIYQDATHRKWAVHQRGGEPKIFDYADVLQCEVAEAGDPEAEEAVSKQEFAQRILANPAKAAKINAAKRNMCLGMGVVVAVQTGKDEVSKLEIPVMTDEVKRDSSLYKSYRNVAEKIKAEFDAMGGLA
>NZ_CP040348.1|WP_138113437.1|1537892_1538660_-|GntR-family-transcriptional-regulator
MAGESYAIPPKDHAVEGILWYIQHHQLAGGDRLPAERVLCEEIGVSRTALRAGITRLISCGTLESRRGSGTYVCPPKPLNIFQETYNFSDAVRTAGLHPSSRLVSTGTIEADEALADKLGVAVGAPLLRMQRVRLIEGEPASIETAHVNLSLCPSLPEHDFECESLYDVLLKEGGVRVEHGREHISISRLNFEEAELLQQEEGTPVFYESSIEFDKDMRFVEHCKSVILPTKFRFADNGEENGMRSVAGEQWLKQ
>NZ_CP040348.1|WP_035137743.1|1537194_1537908_-|GntR-family-transcriptional-regulator
MAETVDATPVYMRIRRCIEERIERGAYPTGSMIPSEKDLAEEFGTTRLTIRSAVDELVRRGQIRRVRGKGAFVAQKVPAFFERTVGFRESVRASGGEPSVRILARSKRYAGPYYADLFGIAEDDLLYSVRRLNCINGSPVSIETALIPCLLFPTIEDIDVSVFSLYETYEMLGRKPVMAQEKLDIEALGARDAGLLGLEQGDLVLLLECVSYDASGQAIEYVKSFNRGDTGGYTYTY
>NZ_CP040348.1|WP_138113435.1|1535885_1537001_-|SIS-domain-containing-protein
MKMLDYVQLAHVRMGENLERSSELVAQLVDIFQSGSFDALRIVASGSSRHAADCTRDFLQDTLQMQVSVVTPEAFVDFEHTYPQHALNIAVSQSGYSTNTIAALDYMRAHDMAAVALTANVEAPIKEHADIVLDYGVGVESVDFVTLGVEVLVEYLVLFGIYGGQARGTIDAKGVAQRLDGLREAIQANAVMCKTAEAYVQDHMLELSEHTPAMVVGNGPNYGVAEEAALKLSETIKIPAMHHEGEEFVHGPEMQIVPGYLVFIVDDPQGSERLANIADALSNVTAKTVLLTAHPKGRAHEVVVPQVAPLLSAIPNLVFFQTIAAIIAERLKSWDVHPYLDAVSKQMEVKAEGYEESVNALKAKAAECYGM
>NZ_CP040348.1|WP_138113449.1|1548944_1550144_-|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC
MAEIVLKHVQKVYPNTESKKKGFFGKKKKTEEKKHNLKVTEDGVLAVEDFNLTVHDQEFVVLVGPSGCGKSTTMRMVAGLEDITSGDVLIDGKRVNDVAPKDRDIAMVFQSYALYPNMTVYENMAFTLELKKVPKDEIDRKVRSAAEILGITEYLDRKPKALSGGQRQRVAIGRAIVRDPKVFLMDEPLSNLDAKLRNQMRAELIKLRHEIKGTFIYVTHDQTEAMTLGDRIVVMKDGVVQQIATPQEVFNHPANIFVAGFIGVPQMNFFDAQLVRSGNGFTVKTEDMNVALAPETCAQLALNWDGGDVKEITAGVRPEQILLADKGEEGALQGTVEVTELMGSTEHVHVTAPDGQFVLIIPVVDLEAKGALKAGDTIWFKFEKNATHLFDKVSGKNLI
>NZ_CP040348.1|WP_138113451.1|1550212_1551052_-|carbohydrate-ABC-transporter-permease
MKRDKVINRALSIFFTILSLAWIYPVFMIALNSFKKATAISTTTAFDLLTPETFNGLANYVHALNEQGFASAFMYSLIITVTSVVLILVCCSMCAWYVVRVNNKISNFFYYLFVFSMVVPFQMLMFTLSNLADRIGFNTPFNICFIYLGFGAGLAVFMFAGFVKNIPLEIEEAAMIDGCNPVQVFFKIVLPIMKPTYLSVGILETMWVWNDYLLPYLTLDSTKYKTIPILIQYFRGGYGHVELGPMMACIMMVVIPIVVMYILCQKYIIDGVVAGAVKG
>NZ_CP040348.1|WP_138113453.1|1551051_1551906_-|sugar-ABC-transporter-permease
MGKALKRWWPLFMLPTCLAFMIGFVIPFIQGFYLSFCQFITINNAHFVGIENYVRALSDSQFATSFFFTVAFAFLSTVLINVIALAIAQALTRKALKGTNIFRTIFFMPNLIGGIVLGYIWQILINCLLSNIGAQLIALNSAAGFWGLIILTLWQQVGYMMIIYIAGLQSIPSDYIEAAKVDGATAWQTFWKVKVPNLMPTITICLFLSITNGFKLFDQNLALTGGAPAHSTEMLALNIYNTFYSRAGIAWQGIGQAKAVIFCILVVAISMIQLKATRSKEVQQ
>NZ_CP040348.1|WP_117746799.1|1551993_1553310_-|ABC-transporter-substrate-binding-protein
MKNEMSRRQFLGFAGSAAAVLGLGLVGCGGSAGSGSSASGDAAEVYFLQFKPEVDKEWKEIAKAYKEEKGVEVKIVTAASNTYEEKLKSEMSKSSAPTLFQVNGPTGLKNWKDYCADLSDTKLRGELIDDSLALQSDGKDVCIDWVQESFGIIYNKQLLEKAGYKAEDINSFDKLKACADDIQARKDELGVEGAFTSAGMDDSSSWRYTTHLANMPLYYEFEKEHNQEDDEIKGEFLDNYKQIFDLYITDSTCDPSQLASKTGDDATNEFATGKAVFYQNGSWAYSDLVKAGMTDDQIGMMPIYIGVDGEENQGLCSGGENYWCVSSQASEDAQKATEDFMYWCVTADTPTSIIADKMGLTAPFKSAKETTNVFSQQAVAMAKDGKKTVAWDFVYIPSEEWKKNLKQALIAYAADNSKWDGVKNAFVDGWKTEKAASE
>NZ_CP040348.1|WP_055285612.1|1553616_1554336_-|GntR-family-transcriptional-regulator
MPKAIYEGIYREIRSRIINGTYAFQEMLPTEAELTAEFGCTRNTVRRALSMLADGMFVQPIHGKGVRVIWLKGETDMLGALEEVESFGEFAKRNNAVASTDVKSFEHLVCTEQLSRHLGFKVGEELIRVVRVRSLNGNARQVDHGYFLASIAKGLTPEIAADSIYGYLEHKRGVKVMASRRTVSVELANDEDCSYLDLGKYNCVAVMESQSYTSDGILFEVTHTRTHPEIFHYRVNSKR
>NZ_CP040348.1|WP_138113455.1|1557141_1558155_+|polyprenyl-synthetase-family-protein
MSSPFTSFLAQHFDQINDYLATFFDGQATSADIERYLYAPLSAFTANAGKRHRPLICMLAATAVGGSFESARSAAAAIEHFQSGALIHDDIADNGQLRRGKPCMHLTEGTGLAINCGDLALTMVTKTVLDDPTLESDVKLRVLHELTEMIVRTIEGQALDLGWVRDGRFDISVDDYLDMATHKTAFYSGATPLAAGAIIGGGSDEQIEALRAFGLHTGLAFQIQDDLLNLVGTKEAANKDFRTDITEGKRTLVAVHALSDERHHDEVEAILSSGTDDPAQLARAVEIFQETDSIDYAHTYALDLTAKAKAAIENVELDPHARELFLSMADFFVERLN
>NZ_CP040348.1|WP_055285651.1|1558314_1559199_+|peptidoglycan-binding-protein
MQGAAVEDVQSRLLQLGYTIDAAEVTDKYFGATTEQAVSTFRLDSGLAAGHAVDIPCWSALVDASYKLGDRTLYLRMPNFHGADVQALQRALNVLGFACGEDDGYFGPHTEAALQQFQENVGLFADGMAFQDTYAYINRLHHVWEGKPSVTEAESRIGFARAANVLERFQIAVIGEDPIARSVASRMWNIATATTDNSGMMLCDSEVPTDVDLVLEIASDELPADAAPRATIALAECHNLAQRIRTANVAAQQKPARIRIELTGMTRYNGTFTASDAQTLAVRLLDGVCDALAD
>NZ_CP040348.1|WP_138113457.1|1559650_1561831_-|hypothetical-protein
MAKTVYSDNQNNVDALAERLSSQTSLSAERAKLVAYDLLCRKALKIKSSALAQIFRSVDKECDTKAMRDELIAAKIVTKIEGSGINGRPAFYTINAEIRDAQEQPAESVEGFVVEDSADVPAVEEAAPREHVDTDELLDENVVRAFTAKAGRGGFGGGGKRDAQRRAQQERFRRAVAQKGETDAEAVEEKPVGMQEPTLAQEHAEIQEPKRRRGAHFKAEQRGAACEVQDSVEAADASDEPAKKAPGSCRPGRGFEGRAYPVRRQEKSEPASTTQGEKDEKAVEPVAREQKPVEPQLEVDAEAKGQQPTDEQTEQGASSKPRRRRHRGGRSSHAETATEKTTPQNEDAKAEVSSGQPKRQSAKESKSDRPQKQASMPKRERNPQGDSKRKSQKKPESAAVDTAAQQPESAAHGEVSALALARVLGRQLFKVVPTPMALSKIKEQQTQIVKVEGKDGKKAPQRTQHNEMSNRKIAEEIAIIQAWIEQNRGADTPVASRRQRAYQIFNDEKAFDGKHGERLIRRMTEKGISMQAIKVAPNRPVHFTGFFTLGADKPFIMVENLDTYDEIVKLLRGRKHAKLFGIKVGGVIFGGGCKASVSHALDDYLAEIGYRFNYVYYVGDIDREGARIVEQTRNANVVEIRLHAGMYRAMLAEHKRRVKAGGECEPAAANQGVPQNLAATIKDLPMVTRVQFRNVLREGGRIPQEILMTADYRDGDSGSFDRMLNN
>NZ_CP040348.1|WP_138113459.1|1562015_1563905_-|carbon-starvation-protein-A
MNGVLLMVVAAAVLACGYLGYGRWLANKWGVDKEALTPAKRMKDGNSFSPVSAFTAFSHQFSSICGAGPVTGTIVAMAFGWLPVVLWVLVGGIFFGAVHDFGALYASMKNNGKSLAQLIEKYIGKTGRRLFLLFCWLFCIIVIAAFTDMVCKTFMFTPAVDASGAATGAIDFTKSYAAGCAGTISILFTFVAIAFGWAQKKFNLTGAAEFVTGVVLMVLMFAVGMQFPVYLDKFQWFAVVMVYLVFAGAMPIQMLKTPRDYLTSIMMIVMIVCAVLGIVVLGVNGQATITAPVFTGFSTASGMMFPVLFVSVACGALSGFHSLVSSGTSSKQVEKEQDAVKVGYGAMIVESFVGILAIIVAGIMFSDMNTAGTGALNAGVASTPFQIFAAGISRGMQAFGVDGTLATVFMTMNVSALALTSLDAVARIARTSFSEFFAQTNDALAIESKAGYMKVLGNPWFATVVTLLPGLALAFGGYANIWPLFGASNQLLGGMTMITLAVFCKCTGRKGWMLYVPVVFLLCCTFTSLVQSAMGCMTAVQAYGFFGTIPATATTAAVSVAATKGLQLVFAVLLMVLGLIVAVNCLKEFFGKEAGSMPDEEPEWSDMGKAEYGRAAAAEAPADAEAVKA
>NZ_CP040348.1|WP_138113461.1|1564713_1567098_-|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD
MSLHNDNALVVALDTSTDMLACAASWIDGQTGETKLVSGDHMCRRHANVELVNTVDGVLAQAGLDRSDVGCYVVGRGPGSFTGVRIGISTAKGLARGANVPLLGVSTLDACAWTAWKAGVRGKLGILADAMRGEVYPALYMLVDEGPERQFEREHVVKAAVALDEWRQAADWDQVQLTGDGLVRYGKLLGEDETARCVERDLWWPSGEGLLLAHAAGDGDPARVLPIYTRLSDAEENERKRLGLAESAQSEITGVADELAGRHLQFRPMGAADAEGASALEAACFEGAGHEAWTPGMFLSELGEDVAAPRSWWVAHDDGKLLGLAGGMVVDGDVQILDVAVDPAHRREGIARKLLSHVSYDAQMLGCTTASLEVEDGNEGAIALYNALGFTEAGRRRGYYGAGKDAIVMTAPLPLVLPVDNASPEPTAAEQRVWPLPAPERTVEERAEIERRRLVLAIESSCDETAVAIIDADGNMLANQVSTQIDFHARFGGVVPEIASRKHVEVIVSVVDAALEDAAASLGLEGGAIAPSELAAVGVTQGPGLVGALVVGVAFAKGFAYAAGKPLICVNHLEGHLFANLLAQPDLKPPFIFTLVSGGHTMLVHVKAWDDYEVLGETLDDAVGEAFDKVAKALGLGYPGGPIISKLAETGNPKAIDFPRALNSRGDYRFSLSGLKTAVTLYIEQETKAGRTIHLPDLAASFEAAVFDVQYKKAKNALHATGCKEYCIGGGVSANPHLREMMIKKLGRQGIRVTVPPLSACTDNAAMIAEVARRKFDRGEISPFDVDADPNMTL

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Crispr_ID: NZ_CP040348_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040348_2

1834116-1834228

Orphan

Consensus_repeat	Method
CCTATTCCTCAAAACTGAAAAATTTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040348_2

>merge|NZ_CP040348|2|1834116-1834228|CRISPRCasFinder
CCTATTCCTCAAAACTGAAAAATTTTCGTTTTTGAGGAATAGAATTAAGGTAGCTCGGTCTTTCGCGAGGTATATTCGCTATAGAGCCTATTCCTCAAAACTGAAAATTTTTC

>NZ_CP040348|2|1|1834116-1834228|CRISPRCasFinder
CCTATTCCTCAAAACTGAAAAATTTTC	GTTTTTGAGGAATAGAATTAAGGTAGCTCGGTCTTTCGCGAGGTATATTCGCTATAGAG
CCTATTCCTCAAAACTGAAAATTTTTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040348.1\|WP_055285369.1\|1834269_1835466_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224292
NZ_CP040348.1\|WP_138113641.1\|1826703_1827771_+\|LuxR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197715
NZ_CP040348.1\|WP_138113647.1\|1829770_1830589_-\|exodeoxyribonuclease-III	unknown	unknown	gnl\|CDD\|197321
NZ_CP040348.1\|WP_138113668.1\|1843598_1843838_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040348.1\|WP_138113657.1\|1837534_1838467_+\|DUF4268-domain-containing-protein	unknown	unknown	gnl\|CDD\|379461
NZ_CP040348.1\|WP_138113665.1\|1840436_1840931_+\|DUF1648-domain-containing-protein	unknown	unknown	gnl\|CDD\|377929
NZ_CP040348.1\|WP_138113663.1\|1839319_1839916_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040348.1\|WP_138113670.1\|1843990_1844185_-\|antitoxin	unknown	unknown	unknown
NZ_CP040348.1\|WP_138113659.1\|1838514_1838697_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040348.1\|WP_138113651.1\|1831572_1833315_+\|dihydropteroate-synthase	unknown	unknown	gnl\|CDD\|273657
NZ_CP040348.1\|WP_138113637.1\|1823526_1825167_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|224490
NZ_CP040348.1\|WP_138113635.1\|1821521_1823165_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213192
NZ_CP040348.1\|WP_138113655.1\|1835570_1836344_-\|type-III-pantothenate-kinase	unknown	unknown	gnl\|CDD\|237347
NZ_CP040348.1\|WP_138113639.1\|1825168_1826581_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240548
NZ_CP040348.1\|WP_138113645.1\|1828515_1829235_+\|ECF-transporter-S-component	unknown	unknown	gnl\|CDD\|377783
NZ_CP040348.1\|WP_138113649.1\|1830724_1831477_+\|NAD-dependent-protein-deacylase	unknown	unknown	gnl\|CDD\|234777
NZ_CP040348.1\|WP_138113643.1\|1827841_1828345_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040348.1\|WP_138113653.1\|1833315_1834017_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223417
NZ_CP040348.1\|WP_138113661.1\|1838829_1839315_+\|DUF2958-domain-containing-protein	unknown	unknown	gnl\|CDD\|371405
NZ_CP040348.1\|WP_138113667.1\|1841256_1841703_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP040348.1\|WP_055285369.1\|1834269_1835466_+\|ATP-binding-protein	gnl\|CDD\|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	7.6534e-70
NZ_CP040348.1\|WP_138113641.1\|1826703_1827771_+\|LuxR-family-transcriptional-regulator	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	3.1692e-15
NZ_CP040348.1\|WP_138113647.1\|1829770_1830589_-\|exodeoxyribonuclease-III	gnl\|CDD\|197321	cd09087, Ape1-like_AP-endo, Human Ape1-like subfamily of the ExoIII family apurinic/apyrimidinic (AP) endonucleases. This subfamily includes human Ape1 (also known as Apex, Hap1, or Ref-1) and related proteins. These are Escherichia coli exonuclease III (ExoIII)-like AP endonucleases and they belong to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. AP endonucleases participate in the DNA base excision repair (BER) pathway. AP sites are one of the most common lesions in cellular DNA. During BER, the damaged DNA is first recognized by DNA glycosylase. AP endonucleases then catalyze the hydrolytic cleavage of the phosphodiester bond 5' to the AP site, and this is followed by the coordinated actions of DNA polymerase, deoxyribose phosphatase, and DNA ligase. If left unrepaired, AP sites block DNA replication, and have both mutagenic and cytotoxic effects. AP endonucleases can carry out a variety of excision and incision reactions on DNA, including 3'-5' exonuclease, 3'-deoxyribose phosphodiesterase, 3'-phosphatase, and occasionally, nonspecific DNase activities. Different AP endonuclease enzymes catalyze the different reactions with different efficiences. Many organisms have two AP endonucleases, usually one is the dominant AP endonuclease, the other has weak AP endonuclease activity; for example, Ape1 and Ape2 in humans. Ape1 is found in this subfamily, it exhibits strong AP-endonuclease activity but shows weak 3'-5' exonuclease and 3'-phosphodiesterase activities. Class II AP endonucleases have been classified into two families, designated ExoIII and EndoIV, based on their homology to the Escherichia coli enzymes exonuclease III (ExoIII) and endonuclease IV (EndoIV). This subfamily belongs to the ExoIII family; the EndoIV family belongs to a different superfamily.	1.45284e-134
NZ_CP040348.1\|WP_138113657.1\|1837534_1838467_+\|DUF4268-domain-containing-protein	gnl\|CDD\|379461	pfam14088, DUF4268, Domain of unknown function (DUF4268). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 151 and 387 amino acids in length.	3.8209e-13
NZ_CP040348.1\|WP_138113665.1\|1840436_1840931_+\|DUF1648-domain-containing-protein	gnl\|CDD\|377929	pfam07853, DUF1648, Protein of unknown function (DUF1648). Members of this family are hypothetical proteins expressed by either bacterial or archaeal species. Some of these are annotated as being transmembrane proteins, and in fact many of these sequences contain a high proportion of hydrophobic residues.	3.08725e-08
NZ_CP040348.1\|WP_138113651.1\|1831572_1833315_+\|dihydropteroate-synthase	gnl\|CDD\|273657	TIGR01496, Dihydropteroate_synthase, dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by model TIGR00284. [Biosynthesis of cofactors, prosthetic groups, and carriers, Folic acid].	1.93776e-51
NZ_CP040348.1\|WP_138113637.1\|1823526_1825167_+\|amidohydrolase	gnl\|CDD\|224490	COG1574, COG1574, Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only].	2.35625e-137
NZ_CP040348.1\|WP_138113635.1\|1821521_1823165_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213192	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system. Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.	4.79258e-75
NZ_CP040348.1\|WP_138113655.1\|1835570_1836344_-\|type-III-pantothenate-kinase	gnl\|CDD\|237347	PRK13318, PRK13318, type III pantothenate kinase.	2.51973e-97
NZ_CP040348.1\|WP_138113639.1\|1825168_1826581_+\|hypothetical-protein	gnl\|CDD\|240548	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Streptococcus aureus MepA and Vibrio vulnificus VmrA and functions most likely as a multidrug efflux pump.	1.80905e-62
NZ_CP040348.1\|WP_138113661.1\|1838829_1839315_+\|DUF2958-domain-containing-protein	gnl\|CDD\|371405	pfam11171, DUF2958, Protein of unknown function (DUF2958). Some members are annotated as lipoproteins however this cannot be confirmed. This family of proteins has no known function.	0.00457263
NZ_CP040348.1\|WP_138113649.1\|1830724_1831477_+\|NAD-dependent-protein-deacylase	gnl\|CDD\|234777	PRK00481, PRK00481, NAD-dependent deacetylase; Provisional.	7.57143e-106
NZ_CP040348.1\|WP_138113645.1\|1828515_1829235_+\|ECF-transporter-S-component	gnl\|CDD\|377783	pfam07155, ECF-ribofla_trS, ECF-type riboflavin transporter, S component. This family is the substrate-binding component (S component) of the energy coupling-factor (ECF)-type riboflavin transporter. It is a transmembrane protein which binds riboflavin, and is responsible for riboflavin-uptake by cells.	0.000963299
NZ_CP040348.1\|WP_138113653.1\|1833315_1834017_+\|hypothetical-protein	gnl\|CDD\|223417	COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism].	1.79326e-07

>NZ_CP040348.1|WP_138113653.1|1833315_1834017_+|hypothetical-protein
MIEMNAVAAGTELDAARDAGREGMSAGWCAWSAGDASLMFSLIVRPDVNMHAFHGLPFVAAMGMMDALVGTASTPGLGLAGKVGIQWPSDIVCGAPAFETSLARVAVNGGAAAAGMFGAVTVDIERSALGELGVDVADEALVETLAAAVLARVDAWAVVANTPQGAAGPLAPVLGEYFDMVPLLGRQVAAVSPNGLPLAVGVFAGLDIWGRATIKTDAGEQEFPPEAVRIRGL
>NZ_CP040348.1|WP_138113651.1|1831572_1833315_+|dihydropteroate-synthase
MANDSKTWRCGKYELSFDRPRIMGVLNVTPDSFSDGGEHFDPDAAIEYGLAMLDAGADIIDVGGESTRPGFTPVNPDEEARRVLPVVRALAKEGAIVSIDTRHVAVAKAAVRCGASIVNDVTGFTDPKMVEFVKTSTCGVIVMHAGEVAAPARTHATVQLDTSAAAFVAEKAREAAAEAAREAEKPARRRRGKLLGEPKPEAKLPGGVVQPSLPFGEPEPTFEPSSEQETPAAEQATAAETVAPAPEAAPAATEAASEPNDRLAAMMRRSARREEAYVPTSQLRRFTLPDSAPIMRRVMGFLSDQARTLIHAGVSRDRICIDPGPGFGKSANEDIVIQRETAKMASLGYPLMCAVSRKRFVGAVSGVTEAAERDAATFGVCLGAIQAGANIVRVHDAAGFAQFLNGYWAVAKPQPRRAFVAVGSNLGHRCDNIRAAREMIAEIPLTCVSNSSKIYESEPAYETRQDAFANAVIEIKTELAPLVLLDELMKIEAELGRDRSKKAKANGPRTIDLDLLWMDGETHGGKKLRLPHPLIGERDFVLVPLEDLMHDPARFFRYNGVEVKEPEDRVGHIVGELGRM
>NZ_CP040348.1|WP_138113649.1|1830724_1831477_+|NAD-dependent-protein-deacylase
MTQAISDPRQASAALADLFDTHKRVVFFGGAGVSTASGIPDFRSVDGLYHQQFAYPPETMLSHSFYEAHPAEFFDFYRTKMIALNAKPNRCHTKLAELERAGKLDAVVTQNIDGLHQAAGSQRVFELHGSVHRNICQSCGAVYSAEWICSREHEDAAGVPVCPACGGRIKPDVVLYEEPLDEHVLTGAVAAIAAADALIVGGTSLVVYPAAGLTRYFTGDTLAICNLAPTDQDANADLLISCDIAAAFAF
>NZ_CP040348.1|WP_138113647.1|1829770_1830589_-|exodeoxyribonuclease-III
MPQTYTFASWNVNGLRAVLKKDPSFIQIAQELDVDILALQETKLQEGQVDIDLPGYHQTWSYAERKGYSGTAVFSRQEPLRVLRADALLPYAGEGEAAELVAQAATEGRVCALEFDKFWFVDVYTPNAQNELARIDVRMAWDDAYRGFLGALEHETGKPVVTCGDFNVAHEEIDLKNPKSNRGNAGFSDEERGKFTELLNAGFTDTWRTANPDVEGVYSWWSYRFNARKNNAGWRIDYFLVSDAIAANVRDTGIRGDIFGSDHCPVTLTLEL
>NZ_CP040348.1|WP_138113645.1|1828515_1829235_+|ECF-transporter-S-component
MARGARVLARIWRYIEGPVLLFVPPGMGIMLYLGIAQAALLMLAMVALVLALFFAGYEASRPGLRQIMPTLVLAALAAAGRILFGPIPDFKPVSAIAIIAGATLGRRNGFMVGALAALTSNFFFGQGMWTPWQMYAWGLVGYVGGALAHAGAFDRADGTVRMPALMAYGFASGLLYGVVINAYDIIGFVQPLTWAGVVARLATAVPFDITHGLATCVFLAALYKPWCRRINRVVVKYGL
>NZ_CP040348.1|WP_138113643.1|1827841_1828345_+|hypothetical-protein
MNMNTRETRVAGIINALVNPLLMCSFLPIIEGKAALDMSSPTGFWGQLALAVVIAEAVSSLPQFGRVVGDWVDFFGFKPGGPASKIAGTVFAATLLFLIIGLAEIAFQTGFGLVGETTYFSRWVKLATGGWSFVVVGGLLFDPVAAKAAHVLVGEKAPQTEEMLEVE
>NZ_CP040348.1|WP_138113641.1|1826703_1827771_+|LuxR-family-transcriptional-regulator
MRLVAAKGEDKLVGFYIYLYNVFFLCLFACAAFFCGVTKGMTESKRFAYLSMLMALLALEGVADMGSSLVSGTFSSGGSFGPHGALTLFGIAKTLSQMGEEILFYLLACDVTKRTARSALFLLFPVLALVRCLAGTVYLGIVSDIVFLLIDPLVMISLCAWSLMGLAHSAPVEDADSRALHLLRSLLLLCLCAYAASIGEDLIYAAMYMRSGSVPFYVGKIVIMEDTLWAGLAVSCIIYARHYQDEFHVRRTEQLVRDRLDLYRLETEQRAAEQGASNIADFCALYELTPREQEVLSRVLTGQGNQQIANDLVISLGTVKAHVHSIYRKLSVSRRSELMGMFYERSRGAAAPAEK
>NZ_CP040348.1|WP_138113639.1|1825168_1826581_+|hypothetical-protein
MAETSPNKLARNYTLIGLFLFAAPSILLQLWTGIYQIFDTAIATNFNSTATLSAINIVYPAQAVVEAIAFLFSGGSAALLGKLLGEKKTTEANKTFTCVLLISTIIATVWGFAISFAGDQVWYFMGADAGLAPVCTTYWNVHRFFMPLYTIQLGFQMWLLTAGKPTHCMVITILGGLVTLGMDVVYQGTLGLGTTGAALGFGTGSAFAAIASAVVIFSKSSALHYDSPACPAKNVAESCKIGLADFIYSAATGFMTAIYNIQAMKYFGADGVAVAAIFLYVQFLFVGPFIGFGKGATPIISYQIGENNPKKIHGTYQKYRRLSAILIVVIAVLGIVMMKPILLVYGQVPGDPVYTLASQKWILFASCAGLVGINICIQNMLTAFNDTMMPLIISTLRSLVLPIALLLVLPMVMGGDGVWLALTVAEAFTAVVSLFFLKKGAQKYGYNTDEGVELPEEVLEAARAAAAEEM
>NZ_CP040348.1|WP_138113637.1|1823526_1825167_+|amidohydrolase
MQADTVLKGKVFTSNRAEFTAQAVAIKDGVFVYVGDEAGVSEYVGPDTKVIEAGDGMFMPGFCDAHMHFSSGAGQFAYEIDILGLETVDEYVDTIRKYVEEHPGREFYKGMGWDNAVFENEGKIQAKELLDAVCPDVPMLIGSYDGHSYWVNSKCLEKAGIGRGFVSQEAGTIVLDPETQEPTGLVRDWAMNDVFKAIRSYTVEEFKSAILTLQEDLLAVGITNIYEPILRDEVNAQIALEELDIEGKLKLKVTSGFYCKPEHEGLDKIDRCAKVRDSYRGEHYQCNNIKFVLDGVIESGTAYLLDDYTDKPGFRGVPNCEPDDYNAMVRYAKEKGFQVHVHAIGDAAISMALDGFEYAQATDPKDDWRPTITHLQVMRDEDIDRFAALKGIACANPTWHFKDPVCYESLEHAQLGERAESEYPLKKFWDRGMVVTSATDFPVSNPDPMEGLEVGVTRCAPGDASEETVLDPNQRVSVEDMICAGTINGAYQNFLEKRIGSIEVGKEADFVLMDRDITSIDPHTIHEAKCLMTVIDGKTMYEKEGE
>NZ_CP040348.1|WP_138113635.1|1821521_1823165_+|ABC-transporter-ATP-binding-protein
MARLDRGPVSGAACGPDMPAIEVRSLSFAYPDADAAVLEGLDWSVPQGAFALLVGGTGSGKSTLLSLLKPEIAPAGERTGELRVLGEPVADMDVRASAERVGYVFQDPENQIVCETVWHEMAFGLENLGLARDEMRRRVAETSYFFGLEDWLHRDTDTLSGGRKQLLSLAAVLALRPRVLLLDEPTSQLDPVAEKNFLHALFRVNRELGCTVVVATHQPRPMLEYATCAYRIEGGRVREVADMASLGRRESLVFDDMLGWGAIRCAKKGVFSRREDNLGSLEPSGDVSSAKKSSELDKSSEFVAQSSLENGSEAFPRTDGSRILQKMHGGSATTLSEGWFRYDRAGGWVLRGLDVAFSAGAVHAVVGGNGCGKSTMLSVLAKTAKLQRGRMVRGAASAALLPQNPKALLVAETVRDELMEWASTCGYDENLARERAAQLGLDGLETRHPYDLSGGQRQLLALAKLLLIGPELLLLDEPTKGLDLESRRIIARALRDHAKAGGTVIMATHDLDFAEQVADDVAMMFDGEIACMEPPADFFADNVFYRA
>NZ_CP040348.1|WP_055285369.1|1834269_1835466_+|ATP-binding-protein
MKLINRTSYMDTLTSLIGVPDIKVITGIRRSGKSKLLEALRDYVEANLSNSNVIHINYNLDEFENLLEYHALLAYVKEHRVSGKQNFLLIDEVQMCDGFERAINSLHASEQYDIFITGSNAFLLSSDLSTLFTGRTFEIEVFPFSFEEYRLYGDEGEVDRDFDEYARTGGMSGSYPYPLQEQRYQYLSNVFKTLIVRDIVQRHNVRNESALLRIADYMMDNVSNITSARNITDILNADGLKITNKTVGTYMGYLCDAFAFYKVRRYDIRGKKYLKSGEKYYLADHAFKYALLGTRDMDWGRVYENMVAIELLRRGYEVYVGVLYKKEIDFVAIKRSEKLYIQVSDDISSDKTFEREISPLLSIGDAYPKMILARTHHEATDRDGVQIVDLARWLCGEA
>NZ_CP040348.1|WP_138113655.1|1835570_1836344_-|type-III-pantothenate-kinase
MLLAIDMGNTQTAMGLFDGDELVQSWRMPTDRSYTADEIHVRLMGFFKMYGLSLDAVDAIAFAGVVPQLSREWHAVADRIAADAIVIGPQTAAVTKLRAARPQAVGADRVANAVAAETFYGAPAIVVDFGTATNIDVIDEDGYYIGGAIAPGIRISMDALAARAAKLASVPLEAPEHAIGRDTEECIKVGAVVGAAAMAEGLVARMKRELGREDATVIATGGLAGIVADSTDAFDVVDGQLTIKGICEIYRRMQELG
>NZ_CP040348.1|WP_138113657.1|1837534_1838467_+|DUF4268-domain-containing-protein
MKTYNLDTIQKVPLREVWPHEAHDFTKWLAEEQNLATLGMAVGIELELIETESSVGSFNVDIYAQESGTGRKVIIENQLEDTNHDHLGKVITYAAGKGAEVVIWVVARARDEHRQAIEWLNQHTDSDFGFFLVEVELWKIGGSLPAPRFGVVEQPNEWTKTVKLSEGLSETEKVKLAYWTAYRDVAGGHPEFLKEFSPQKPSKDHWSTLRLGVSAYHLALLIDTQKGRTGIELYVDDDKEIGHRAIANSGVFEDHLGLTAVTFDAKKASGLRFYKAGHPIKGHQDAWPGYIEEQLGWALEMKKIIAEIEL
>NZ_CP040348.1|WP_138113659.1|1838514_1838697_-|hypothetical-protein
MELEDIVYELACLHESMLFCCENRSGKEDPVFAHYYMALGRIVRDLEEAERRIRTETGRR
>NZ_CP040348.1|WP_138113661.1|1838829_1839315_+|DUF2958-domain-containing-protein
MRPRTNLRSAPVGGGRHGPPLTRLRSGAALQGAKPTTTHGVAIRLCPQGRDVEGRLPGTEEDMQQLMTEEIAKTVPRLYEQDGAEDPTVYAHYFSCVNGWDWWLLEFDGTDEAFGLVEGYDDELGYFSIKEMAELNRQMGFAAVERDEHFSPKPLSAVRRR
>NZ_CP040348.1|WP_138113663.1|1839319_1839916_+|hypothetical-protein
MVTVEFDSMGEAVRLALVADEYVGGGLAVLLLDATDPRSEGYMAEWGVLTASVPAAAEWCRGRGNIAIDADAPAALLEALEAAGTVRMAARSAASGMARYPLATVAGHALDGMGGLSETLEEALGSTVVVEYESGGDGGAFEVGTAPAGSAELERLIAAARSEADALAIAGGWAAVLVGFGDAETIDCETGRTVYVAG
>NZ_CP040348.1|WP_138113665.1|1840436_1840931_+|DUF1648-domain-containing-protein
MECERARRCGIDESLKKITAVLSSFILSILPFLILWAAWSVLPDTIPAHWSGGVVDRWGNKLELLVVPLFSLIGSIAISVYLIVSTRRREFADFSVRMRRDFVACYISSLLLSTTCSVIIAVWVQLILTQSTAVDGGLGLSILYSLPGLYVILCALPPFASYAA
>NZ_CP040348.1|WP_138113667.1|1841256_1841703_+|hypothetical-protein
MKSKRFILNALLVVAILTLLVFSYSYMNQPRFGYALYAVFSGETTYNTYNTIDFIDAIFFYVVGPVSSELIAFAVSYNLNQQSQTHSATSAKQGINLFVIMIILQIATVLIIALTATNVLKYEFGFIVSCLMAIAAGIAVSYTTPAKK
>NZ_CP040348.1|WP_138113668.1|1843598_1843838_+|hypothetical-protein
MLSQNQSRYLVTIGFALLALLFASDLLLKPPKELVSLAISCISALYFTATLFVGLKERKKSAVAASAVCVVIAIASFFI
>NZ_CP040348.1|WP_138113670.1|1843990_1844185_-|antitoxin
MLMYYKLGPYVLELEPRRRVTMNTDGKNIDYFKAEAARTDAPYQVIINMYLTESRMQKRHLAVA

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Crispr_ID: NZ_CP040348_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040348_3

1917714-1917815

Orphan

Consensus_repeat	Method
CTGTTACAGATCGAGACATACCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040348_3

>merge|NZ_CP040348|3|1917714-1917815|CRISPRCasFinder
CTGTTACAGATCGAGACATACCGTAGAGGCCGCCCGAAAATCTCGATCTGTAACACCAGGCCCGATTTTGGCGGCCTAACTGTTACAGATCGAGACAAACCG

>NZ_CP040348|3|2|1917714-1917815|CRISPRCasFinder
CTGTTACAGATCGAGACATACCG	TAGAGGCCGCCCGAAAATCTCGATCTGTAACACCAGGCCCGATTTTGGCGGCCTAA
CTGTTACAGATCGAGACAAACCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040348.1\|WP_138113773.1\|1930096_1931329_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|99777
NZ_CP040348.1\|WP_050766192.1\|1925103_1925946_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040348.1\|WP_138113764.1\|1917860_1918967_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379062
NZ_CP040348.1\|WP_138113771.1\|1926026_1927262_-\|SPFH-domain-containing-protein	unknown	unknown	gnl\|CDD\|259806
NZ_CP040348.1\|WP_138113752.1\|1909853_1910828_+\|nucleoside-hydrolase	unknown	unknown	gnl\|CDD\|239116
NZ_CP040348.1\|WP_138113754.1\|1911008_1911917_+\|PRD-domain-containing-protein	unknown	unknown	gnl\|CDD\|170086
NZ_CP040348.1\|WP_138113767.1\|1922875_1924375_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|340394
NZ_CP040348.1\|WP_138113769.1\|1924371_1924992_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP040348.1\|WP_022094559.1\|1927310_1928633_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370416
NZ_CP040348.1\|WP_082222971.1\|1913579_1915001_+\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|236580
NZ_CP040348.1\|WP_138113775.1\|1931510_1934279_-\|magnesium-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319772
NZ_CP040348.1\|WP_138113766.1\|1920908_1922879_+\|Tat-pathway-signal-protein	unknown	unknown	gnl\|CDD\|379902
NZ_CP040348.1\|WP_138113750.1\|1908860_1909823_+\|ribokinase	unknown	unknown	gnl\|CDD\|238579
NZ_CP040348.1\|WP_138114439.1\|1904744_1905941_+\|divalent-metal-cation-transporter	unknown	unknown	gnl\|CDD\|334596
NZ_CP040348.1\|WP_138113758.1\|1915168_1916194_+\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380500
NZ_CP040348.1\|WP_138113748.1\|1906457_1908674_-\|acetyltransferase	unknown	unknown	gnl\|CDD\|224748
NZ_CP040348.1\|WP_138113760.1\|1916396_1916885_+\|S-ribosylhomocysteine-lyase	unknown	unknown	gnl\|CDD\|376888
NZ_CP040348.1\|WP_138113762.1\|1917020_1917665_+\|DUF4867-family-protein	unknown	unknown	gnl\|CDD\|379783
NZ_CP040348.1\|WP_138113756.1\|1911987_1913436_+\|PTS-transporter-subunit-EIIC	unknown	unknown	gnl\|CDD\|273919
NZ_CP040348.1\|WP_022094560.1\|1928657_1929395_-\|DUF4428-domain-containing-protein	unknown	unknown	gnl\|CDD\|373083

Protein	Function_ID	Function_description	E-value
NZ_CP040348.1\|WP_138113773.1\|1930096_1931329_+\|hypothetical-protein	gnl\|CDD\|99777	cd06170, LuxR_C_like, C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many are active as homodimers. Many are two domain proteins in which the DNA binding property of the C-terminal DNA binding domain is modulated by modifications of the N-terminal domain. For example in the case of Lux R which participates in the regulation of gene expression in response to fluctuations in cell-population density (quorum-sensing), a signaling molecule, the pheromone Acyl HSL (N-acyl derivatives of homoserine lactone), binds to the N-terminal domain and leads to LuxR dimerization. For others phophorylation of the N-terminal domain leads to multimerization, for example Escherichia coli NarL and Sinorhizobium melilot FixJ. NarL controls gene expression of many respiratory-related operons when environmental nitrate or nitrite is present under anerobic conditions. FixJ is involved in the transcriptional activation of nitrogen fixation genes. The group also includes small proteins which lack an N-terminal signaling domain, such as Bacillus subtilis GerE. GerE is dimeric and acts in conjunction with sigmaK as an activator or a repressor modulating the expression of various genes in particular those encoding the spore-coat. These LuxR family regulators may share a similar organization of their target binding sites. For example the LuxR dimer binds the lux box, a 20bp inverted repeat, GerE dimers bind two 12bp consensus sequences in inverted orientation having the central four bases overlap, and the NarL dimer binds two 7bp inverted repeats separated by 2 bp.	7.12438e-11
NZ_CP040348.1\|WP_138113764.1\|1917860_1918967_-\|ATP-binding-protein	gnl\|CDD\|379062	pfam13191, AAA_16, AAA ATPase domain. This family of domains contain a P-loop motif that is characteristic of the AAA superfamily.	1.39561e-07
NZ_CP040348.1\|WP_138113771.1\|1926026_1927262_-\|SPFH-domain-containing-protein	gnl\|CDD\|259806	cd03408, SPFH_like_u1, Uncharacterized family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model summarizes an uncharacterized family of proteins similar to stomatin, prohibitin, flotillin, HflK/C (SPFH) and podocin. The conserved domain common to the SPFH superfamily has also been referred to as the Band 7 domain. Many superfamily members are associated with lipid rafts. Individual proteins of the SPFH superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Flotillins have been implicated in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis. Mutations in the podocin gene give rise to autosomal recessive steroid resistant nephritic syndrome.	3.58193e-78
NZ_CP040348.1\|WP_138113752.1\|1909853_1910828_+\|nucleoside-hydrolase	gnl\|CDD\|239116	cd02650, nuc_hydro_CaPnhB, NH_hydro_CaPnhB: A subgroup of nucleoside hydrolases similar to Corynebacterium ammoniagenes Purine/pyrimidine nucleoside hydrolase (pnhB). Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. .	1.71932e-111
NZ_CP040348.1\|WP_138113754.1\|1911008_1911917_+\|PRD-domain-containing-protein	gnl\|CDD\|170086	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional.	2.96551e-34
NZ_CP040348.1\|WP_138113767.1\|1922875_1924375_+\|sensor-histidine-kinase	gnl\|CDD\|340394	cd16917, HATPase_UhpB-NarQ-NarX-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli UhpB, NarQ and NarX, and Bacillus subtilis YdfH, YhcY and YfiJ. This family includes the histidine kinase-like ATPase (HATPase) domains of various histidine kinases (HKs) of two-component signal transduction systems (TCSs) such as Escherichia coli UhpB, a HK of the UhpB-UhpA TCS, NarQ and NarX, HKs of the NarQ-NarP and NarX-NarL TCSs, respectively, and Bacillus YdfH, YhcY and YfiJ HKs, of the YdfH-YdfI, YhcY-YhcZ and YfiJ-YfiK TCSs, respectively. In addition, it includes Bacillus YxjM, ComP, LiaS and DesK, HKs of the YxjM-YxjML, ComP-ComA, LiaS-LiaR, DesR-DesK TCSs, respectively. Proteins having this HATPase domain have a histidine kinase dimerization and phosphoacceptor domain; some have accessory domains such as GAF, HAMP, PAS and MASE sensor domains.	3.44616e-14
NZ_CP040348.1\|WP_138113769.1\|1924371_1924992_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	2.16697e-40
NZ_CP040348.1\|WP_022094559.1\|1927310_1928633_-\|hypothetical-protein	gnl\|CDD\|370416	pfam09297, zf-NADH-PPase, NADH pyrophosphatase zinc ribbon domain. This domain is found in between two duplicated NUDIX domains. It has a zinc ribbon structure.	0.00644174
NZ_CP040348.1\|WP_082222971.1\|1913579_1915001_+\|6-phospho-beta-glucosidase	gnl\|CDD\|236580	PRK09593, arb, 6-phospho-beta-glucosidase; Reviewed.	0
NZ_CP040348.1\|WP_138113775.1\|1931510_1934279_-\|magnesium-translocating-P-type-ATPase	gnl\|CDD\|319772	cd02077, P-type_ATPase_Mg, magnesium transporting ATPase (MgtA), similar to Escherichia coli MgtA and Salmonella typhimurium MgtA. MgtA is a membrane protein which actively transports Mg(2+) into the cytosol with its electro-chemical gradient rather than against the gradient as other cation transporters do. It may act both as a transporter and as a sensor for Mg(2+). In Salmonella typhimurium and Escherichia coli, the two-component system PhoQ/PhoP regulates the transcription of the mgtA gene by sensing Mg(2+) concentrations in the periplasm. MgtA is activated by cardiolipin and it highly sensitive to free magnesium in vitro. It consists of a transmembrane domain and three cytosolic domains: nucleotide-binding domain, phosphorylation domain and actuator domain, and belongs to the P-type ATPase type III subfamily. The P-type ATPases, are a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NZ_CP040348.1\|WP_138113766.1\|1920908_1922879_+\|Tat-pathway-signal-protein	gnl\|CDD\|379902	pfam16927, HisKA_7TM, N-terminal 7TM region of histidine kinase. HisKA_7TM is an N-terminal region consisting of seven transmembrane domains found in Archaea and some bacteria. It is always found associated with histidine kinase.	3.92834e-10
NZ_CP040348.1\|WP_138113750.1\|1908860_1909823_+\|ribokinase	gnl\|CDD\|238579	cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.	9.2008e-102
NZ_CP040348.1\|WP_138114439.1\|1904744_1905941_+\|divalent-metal-cation-transporter	gnl\|CDD\|334596	pfam01566, Nramp, Natural resistance-associated macrophage protein. The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functional related proteins defined by a conserved hydrophobic core of ten transmembrane domains. This family of membrane proteins are divalent cation transporters. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. By controlling divalent cation concentrations Nramp1 may regulate the interphagosomal replication of bacteria. Mutations in Nramp1 may genetically predispose an individual to susceptibility to diseases including leprosy and tuberculosis conversely this might however provide protection form rheumatoid arthritis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others it is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals. The yeast proteins Smf1 and Smf2 may also transport divalent cations.	4.3561e-82
NZ_CP040348.1\|WP_138113758.1\|1915168_1916194_+\|LacI-family-transcriptional-regulator	gnl\|CDD\|380500	cd06277, PBP1_LacI-like, ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	2.71134e-109
NZ_CP040348.1\|WP_138113748.1\|1906457_1908674_-\|acetyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	1.74354e-72
NZ_CP040348.1\|WP_138113760.1\|1916396_1916885_+\|S-ribosylhomocysteine-lyase	gnl\|CDD\|376888	pfam02664, LuxS, S-Ribosylhomocysteinase (LuxS). This family consists of the LuxS protein involved in autoinducer AI2 synthesis and its hypothetical relatives. S-ribosylhomocysteinase (LuxS) catalyzes the cleavage of the thioether bond in S-ribosylhomocysteine (SRH) to produce homocysteine and 4,5-dihydroxy-2,3-pentanedione (DPD), the precursor of type II bacterial quorum sensing molecule.	2.07678e-85
NZ_CP040348.1\|WP_138113762.1\|1917020_1917665_+\|DUF4867-family-protein	gnl\|CDD\|379783	pfam16161, DUF4867, Domain of unknown function (DUF4867). This family consists of uncharacterized proteins around 220 residues in length and is mainly found in various human gut Firmicutes and a few eubacteria species. It is also amply represented in human gut metagenomic datasets. Distant homology analysis and marginal HMM overlaps suggest this family is a distant homolog of Ureidoglycolate hydrolase pfam04115, but this prediction is not verified by experiment, therefore the function of this family is still unknown.	1.01717e-109
NZ_CP040348.1\|WP_138113756.1\|1911987_1913436_+\|PTS-transporter-subunit-EIIC	gnl\|CDD\|273919	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.	1.0607e-105
NZ_CP040348.1\|WP_022094560.1\|1928657_1929395_-\|DUF4428-domain-containing-protein	gnl\|CDD\|373083	pfam14471, DUF4428, Domain of unknown function (DUF4428). This putative zinc finger domain is found in uncharacterized bacterial proteins.	2.19133e-14

>NZ_CP040348.1|WP_138113762.1|1917020_1917665_+|DUF4867-family-protein
MHIYSVSDPEFKSYGNVWDNVPSELTSPVLEALASTPIPDGSKYVASAPELEGVKDADKLGFLMFGGRPFQLGWCNGHNTQLNCLEYHRASEFNLGARDFILLVAHRWEIEDGKLDTACVKAFRVPAGTLVEVFNTTLHYTPCMVDDGGFQVIVALPAGTNGPRPEAAADMPTAGDSYCYWKADKWVLCHADSPKAAEGGYVGLIGKNLDIAVD
>NZ_CP040348.1|WP_138113760.1|1916396_1916885_+|S-ribosylhomocysteine-lyase
MERIASFSVDHLLLEPGVYVSRIDRDPATGAAVTTFDLRLTTPNKEPVMNTAECHTTEHLGATFLRNHAEWSSRIVYFGPMGCRTGFYLVVFGELTSEEILPLVRELFEFVAGFEGDVPGAAPEECGNYLDQNLPMANWLARRYLDRDLADIDENHLHYQQA
>NZ_CP040348.1|WP_138113758.1|1915168_1916194_+|LacI-family-transcriptional-regulator
MLGGTMAKASVREISRITGFSPATVSNALNRKRSVSEETAKVILECAQSLGYQQSTQLESIQFVLARKTGAILDESTFHPAVIEGVERQARRHGMSTSFVSLDFSDLDAVRPQVEGLIADPSAAIVLMGTELGEEDYALFADAAAHLIVLDGWSDRQYFDAVVIANTDSVLRAVDYLIEKGHKQIGYLAGDLRIRNFKDRERGYRQALEDAGLEANPAWRVTLGTTLEGAYRDMGAWLDSVSHNDLPTAFFAENDVLAVGAMRALNEHGIRVPEDVSIIGFDDLSLGAFSNPPLTTVHVPKHEVGEIAVRRLVGNIRNPKSYTCKTAVSTYFVERQSVREI
>NZ_CP040348.1|WP_082222971.1|1913579_1915001_+|6-phospho-beta-glucosidase
MMFREDFLWGGALAANQCEGGWNEGGRGLANSDMLPFGDQRMDVMRGDLDPRALAPDSFYPARKGIDFYHRYKQDIELFAQMGFKCLRLSIAWSRIFPKGDEAEPNEEGLAFYEDVFRTCRAHGIEPLVTLNHYDVPMHLVDAYGGWRDRRLVDLFDRYSRTVFERYRGLVNYWLTFNEINIMTQACFMAAGIIFEQGENRYATVHTAVHHVLVASARAVGACHELCPGAKIGCMLNAGVFYPATCDPDDVLAAQAENRSHYMFTDVQVRGAYPSYVLKEYARHGFEVPYRDDDREVLAANLVDFVSFSYYSTRVAKAHAEGQFDSNLLRSAPNPYLKQEPWGRFIDPKGLRVTMNEIWDRYQKPLFIVENGLGAPDVPEDSGEIEDDYRVEYLRAHIEAMRETVELDGVELMGYTCWGPIDLVSVATGQMRKRYGFIYVDRDDSGAGSFERRKKKSFEWYRRVIASNGEDLA
>NZ_CP040348.1|WP_138113756.1|1911987_1913436_+|PTS-transporter-subunit-EIIC
MANYKKVAEQILSTVGGAENVASVTHCMTRLRFSLKDESLSNDEKLEDISSIISVVHAGGQVQLVIGPTVDKVYDEVCKQGGFEVTVSIDEELDGPQLSWKERLAPKHLFNQLLDAVSGAITPILPIFCVAGIFKMLVILFGPEGAGFMSETSDLYRILSLVGDAAYYYFPVFAAYSSAKKFKTSPVLALLIAVVMIYPDMLAIVEDGKPFSVFGIPMQLVNYTQAVLPVILITWAQSYVERFFKKISPDMLRVLIVPVGTVLVMLPVALCLCGPAVQFVMRLVADFIIWLASVAGPAATAVIGAFWNLIIATGMHVPIYTAILPAALQNGYDAILYPGAAVVAYTTLAIALAYGLRAKDKENRATGWNLFITYAFGRVSEPIIYGILFRDKKALAWNMIGGAVGGLLVSLLHANVYIFTGVGFPWMNVLMFAQDIIPGTIGCLAGGAVTFALAMVFGFEGQEKMPLKSKSGDSEAVESVEA
>NZ_CP040348.1|WP_138113754.1|1911008_1911917_+|PRD-domain-containing-protein
MTAIALLLAIMPFSVSVLERRFTMLAIKKLNNNAVLCRDGQGRDVIAMGRGVGFGGDFPRELPLSKIEHTFYDIDPKGQDVMRDLPSDIVMFAAKVMDIVANELPYDLSTNATLFMADHLSFAVARAQKGVRIAMPLAYEVRETYPKEYKAAQFIVMRLEKELGERLPKDEIASIAMNLVNARVVEAVKATAEPAKQFDDMLEDVIEILESDFRIIVDRDSFDFTRFATHLRYLFKRIQAGESLNSANMQMYKNFREEFPQLAECVKHIGSYCRETWDATLSEEEELYLMIHLNRIISKKGL
>NZ_CP040348.1|WP_138113752.1|1909853_1910828_+|nucleoside-hydrolase
MAIKKLILDLDMGVDDAMALAYAIASPEVELVGITTCFGNVRVEQSAHNCLAVLDLLGRPEVPVYLGADRPLQATEPYAPPASTALIHGKNGIGGASVPASPYEPVGATSADGNAAVDYLIDAARTYGPDLVYVATGPLSNLALALERDAAAMMSIGRVVVMGGALTVPGNVSAGAEANMASDPEAADAVLRSGRKLTMVGLDVTHRVVLTRRDIAGWTGSGTMAGCAFASMVEHYIGSYEMNAPYLGGCALHDPLAVAVAIDPTLVGALGCNLRVDLLGEYRGRTICDERRVADPDKSALVALTVDAPRFLSEFKTRMARVLG
>NZ_CP040348.1|WP_138113750.1|1908860_1909823_+|ribokinase
MADRGIVAVFGSMNMDLSVACERIPRAGETVGGSGFITNAGGKGANQAVAAARMGACTHMIGAVGRDAFGASLVVGLQDTGVDCDFVVHRDDVETGTATIIRCEGDNRIVLSPGANHALAGADVARALRRLVAHELDGDASEIAPAAGSVFIAQGECDLAATAEALVCARELGFYTVFNPAPACELPAEVWPAVDLVCPNETECQVLTGILPTDDVSCVVALNALLDKGAGAAVITLGGAGSVTLGDGGELLRMPALSSTVVDTTAAGDTFIGALAAARLEGLPLFECMAAGARASAVTVSRLGAQQSIPTRAEVEHWFG
>NZ_CP040348.1|WP_138113748.1|1906457_1908674_-|acetyltransferase
MEQFSQSGSRGRRRTGNEPAPHERVKSERRANEPRRTTSPHRASANNAGRANTPAAEQTPARPKSRYIPALDGLRTLAVVAVVLYHLNLTWAQGGLLGVTIFFVLSGYLITRLLLNEVAKTGRIDLKSFWIRRIRRLVPAVVTVVVVTCALCTVFNHVMLTKMRPDILPSLLFFNNWWQIAQNVSYFNALGDPSPLTHFWSLAIEEQFYLIWPPLLFAMVSMHVSKPNARRVVLGLAAVSALAMMVLYNPAADPSRVYYGTDTRVFSLLLGAWMAFIPDRDLAPVRLARRLGLNRLAGAAKHGKNAEGKPGEKADESAETGPAQPSALVRFWSSPASIDVLGLVGLVGLAAMVALTNGYTAFQYRGGTLLCSILTLMVIAACVQPQGMVARALSAEPLVWVGKRSYSIYLWHYPLLLLMNPVANINDTPWWQYILQVLLVVAVAECSYRFIETPFRKGAFGRTVSEFRDGTATPANWVRAHVPACAACAVVLVVALGGLIFVPETSALSGEGAEVLNKEAKNAAPTDQQAADDTDKDNDGFPDGSYDLLMIGDSVSLRAVDSFDGVFPHSHIDAEKGRQFDAGRATFEGYLQQNLAGKIVVFALGTNGLVTDDQIDAIMADAGDKRIVVFVNTRSPQPWVGSTNQAIANAATRYKNVRVIDWYGYSANRNDLFDGDGTHLSTTGVTEYLNLIHDAVKKDLPVHPEDHVNDPQPAAVKSATDALVNALAFKPHKLGTDK
>NZ_CP040348.1|WP_138114439.1|1904744_1905941_+|divalent-metal-cation-transporter
MGPGLLAALSGNDAGGIATYSSAGASYGYKMLWMLPVMTVLLIVTQETAARCGCVTGKGLASLIRERFGVRKSVLAMAALLIANTAVTISEFAGIASGLALFGVPASISVPLVALLVWMLTMSGSFQRIEKILLLVSCVFVTYIVAAFMAGPNWGEVAVDLVVPNIQNDPSYVSLVVATIGTTIAPWMIFLAQNNVVDKNAGEDDIVLQRIDTVSGSLAADIIAGFIIITTGTVLFPAGIQISDAADAARALEPIAGQWSTVLFASGLVAASFLAACVLPGVTSSAICEAFGWERGADRSWDEAPVYRGIITAIIGISAVLVLMPGVDLFQIMMTSQVINGVLLPVVLVFQVVIAADRHIMGANRNGRVWNVLTWATIAVITVLTVVMFVLQAMGYSA
>NZ_CP040348.1|WP_138113764.1|1917860_1918967_-|ATP-binding-protein
MTETIFSPSFGNRPSYLVGRGNVISTFISGLEQEPGNRDRAMLMLGQRGSGKTVLLWELADRARKLGFVVATPTVASEDMLERIVEKIQEAGEPYVNKRRLPKLTSGSLSVFGFSAGLEFTRDVQETKSFQFKLTQLARKLTEQGHGTLILIDELQANSPEIRQLVTAYQELVGEGLNVALVMAGLPGAVSATLNDRVLTFLNRACKVTLEPLSVGDVDAYYQRAFEELNLDIPGDLRLRAARATQGSPYMLQLIGYNIANRCEAGKRVTPEQVDGAIEASKADFENDVCETTLAALSDQDVAFLDAMIDDEDAVSRISDVAKRMSVTPDYAQKYRRRLIDAGVIEQARRGYVRFAVPYMADYLRSQL
>NZ_CP040348.1|WP_138113766.1|1920908_1922879_+|Tat-pathway-signal-protein
MCSPGALPSADFGTCGPLFRPNCRYTKSTMGTRERHIGHAAARTAPVADPRGGRPFAMPRFLVGITHQVYRHRVFAIAGAITALFLMLLAVLPALFAFDPKLSNVVPAYSEVSEEVVDALVHSSSLPLLVAAIVFSIWGVSVYLRCLDYVLRRRLVAIATICALWMIEVILKYKSFTPFYATVLWYLYYVPMTLIPLLYQLCGLRLAGLEQHRLGRRYCAALWIVAILLIGFVLTNDFHQQVFHFDRTSDTWSNDYTYGWGYFAVLVWTAFDFVAFFILVGRSSSFRIQRFSGTAALVLLGGAFFAVSYALRVPWAWRLNFSLVYCVLCVVAMEICLDCGVIPSYHDIAGIFDTLPLDLKVLTRDLQEVYATPVSKPMPVGVREELRTQEHGRAHAFAVASDPDVMYRAFPLLGGSALLAQDVSELNELNRELAHRRMELQRQNELLAADYDLKTHLADQEAETLLVQDVDQALARALKGMYDLLSSLPPLTDEASSHERYRMLQRAKMLVAYCKRKGSLTLAQHGESGFDRDRIQLIANELASDLRTIDIDCASIIAIRRPMHASMVSALYDCVYDFAFFAYTTDHPALMYHLGDHDRCSVELRATLFSNDDADLSQTPAAQELESALQGRNVAYRLEGEPGQLRMIVLMPRAGE
>NZ_CP040348.1|WP_138113767.1|1922875_1924375_+|sensor-histidine-kinase
MTMQISLILPQIVALDVVFALAACLQTIHVPLISSRRSSYNRKVICAYEASLVLHLVISALILFASSGSYLVAPLDVCAKAMGGALWLNAVIFAYGVVLMVRYRRPVMLAELLLVVAVTPPVVFAMGSAWTTVLIAEGAFFLFRSIAALLMDVRNRQEDITAFSTIETINVIPVGILYLDPRGRPLLMNRCMRKNLVELHMPTDLGDMSGTWNDLRKLSMQMPESSRNRVRINLDRFGEARAVIEISPAEIRLFVHDEVMVSGRLFERIIGLDVTEYARAYDRLAQANHLLELAGQELQSQIEEVKKVADNAAYLRMRARVHDVIGQRPSILHRYLEEGRLDDESLEQIDPLLRSIAADLRSGGASEPAEQLGDIVHAFGLVSVQIDVEGALPEDARVAAAFLQIIREASTNATKHAQAHRVHVRLWQEGADADGIAHMTISNDGSPAPVSYREGTGIPGMRHVAQDLGGCLEIHAAPPFTLAVSIPLNASATAQRRNS
>NZ_CP040348.1|WP_138113769.1|1924371_1924992_+|response-regulator-transcription-factor
MIRVLIVEDQAILRESLARSVGDQPDMTVVSAIADASEALGVALKERPDMILMDVCTEHDSNGIVAAARIKERLPECRIIIMTGMPEITFVDQAREAGVDSFVYKNVGIDELFAVMRSTLAGYCTFPKPPESIFSGTAALDDVELSILRLACEGKSRREIAAELFMSEGTIKRRISEILNKTGYDNIMRLAVRAVTEDSIVPNMER
>NZ_CP040348.1|WP_050766192.1|1925103_1925946_-|hypothetical-protein
MKTTFKKSVLAFLTCVLALAFALTGCSGGGKDPKANFVGSWQYSGGTLDGEELTDEYMDMLKEWGLNCVLILDEDGTGVLDMFLEVADLKWEAKDATTVTITAEDESHDLKLKDDKLVLEVEGDKLIFTKSDKDLSGTVKKDREAAEKEEEVDEAVEDDDVQSVEISPAVTVADDDLCTITITEKFKDDWGDIGFVVNITNKSDKDLTFYAPSGKTNVNGTMKEPWFSANLMPGTSATEEFTFSSGELDSLDDLVNTTIGIDAYLTDSYEDVASYSATIA
>NZ_CP040348.1|WP_138113771.1|1926026_1927262_-|SPFH-domain-containing-protein
MGLLKAGLGAAGGVMADQWKEFIYCESMPADVLACKGSKRTGGRSSNTRGEDNVISNGSVIAVNDGQGMLVVQNGKIIEVALEPGEFVFDTGSEPSVFSGNLGDSIKETFANIGSRFTFGGDAGKDQRVYFINTKEIIGNKYGTASPVPFRMVDNNIGLDVDISVRCNGEYSYRITNPLLFYTNVCGNVTDSYTRDKIDSQLKSELLTALQPAFAKISEMGIRYSAIPGHTTELARALNEVLSADWRDLRGVEIVSFGVNSIAASQEDEQMIKDLQKAAVMRDPTMAAANIASAQSDAMRAAAANPNGAMAGFMGMGMAGVMGGMNASQLFAAGQAQQQAAPQPAPAPAPAPAAAPAAGAWTCSCGATNTGKFCSECGSPAPAPAPAKWFCPNCGSENGGKFCSNCGTPRP
>NZ_CP040348.1|WP_022094559.1|1927310_1928633_-|hypothetical-protein
MAFESINYQCPACGGPLHFASAEQKLVCDYCDSRFEVEEVEALYRERQDKADAKADAAAATPKPVADDAVQELAQNAGYICSSCGAELVSDGTVAVTTCPYCGNSAVAPGQLSGDFSPDLVIPFKLGRDDVTAALKEHYKGKILLPKSFVTGNHIDEVQGVYVPFWLYGARVDGEVYFDATNETVTEESDRTVTTTDHYDAYRKGNISFKRVPVDGSSKMPDGHMDAIEPFDYDALRPFSVAYMPGYIANRYDEDCETCKARAERRMEESTISALRETVVDEYDDATVESKQLDYTWEDSDYALFPVWMLSTSWNGKSYLFAMNGQTGRLVGELPCSKPKLAIASVLFFMIGFILSQILFMGEYAFDPDYLTFDIEGILINIIAPLIIVIIGDVLLVGQLKTANEATHADCYCGELDLTEKHDTFSHTETTVVMKDDKDD
>NZ_CP040348.1|WP_022094560.1|1928657_1929395_-|DUF4428-domain-containing-protein
MGFFDKMFEKKECAICGTELGLLGKTKINEGYLCKECAGKLSPYFHGYRSSTADDIREQLAYREANAERLASFNPTRTLSAGRTNIMLDEDAGLLIITSQSRWRDANPDIIEFSQVLGCDMDIDEHRTEIYRETKDGERESYNPPRYDLDYDFNLTIHVNTPYFTEINLRVNDSTIDQRGSIEYREAKRQATEVRDALVQLRQETRDSVVAAKAPKTAVTCPFCGATTIPDASGRCEYCGGAIGA
>NZ_CP040348.1|WP_138113773.1|1930096_1931329_+|hypothetical-protein
MPAGLVACCALGYCGSTAHANLARRFAQTPCLARAAALSYAMGVLVQVVNHMVMPVGIPQQAVLVVCAIAQVALLHGARRAKLRDESDPNFEPSAAGLSVDALEYGAKWHDDPKAKAAFRRAVVRLTVATAYLSSVFAALNAGFTTLHAVGAVDLGDWPRLLLVVSSLVAGALFDLHGRSYMNIGMTCAAILSTLSFFVLIVDGNGGNELAATIIFYLGSGFFVVFFTTKYAAVSLYARWSYFWPCMGRVVNNVCSMFVTAPAVAIISSQNVLAAVGAALVMFVGIAITLLGQLGQRADDAAMRDGLPLATDDLGGDLAPTCSDPEPVEAAEPTSDERLDAFVVTFGLTRRERDILEVLVVSDQSVQDIATTLFLSRSTLYRHISSINKKTGTASRVALINFFWSWTPKD
>NZ_CP040348.1|WP_138113775.1|1931510_1934279_-|magnesium-translocating-P-type-ATPase
MLMLKTVTVLEAISKRRRTARPAAHTGLSKNTIFAATHSAEDALVLLDATANGLTVEQATERLNAVGPNTIEATTKTLARRIADAFIDPFAGILAALALVSLYIDVLAVPEPQRDPSTVIVIGIMLLVSGGMKFIQEARSGNAAEALKDLVSNTCTALRDGERIEIPFDELVPGDVIRLSAGDMVPADARIITARDLFVIESALTGESEAVEKTTAVTVVEGADGSALPLSACKNIVFTGTSVQNGAAMALVVATGSDTYLGGIAKMLNGRGEKSAFDRGVSSVSMLLVRLMLVMAPAVFAINAATKGNVIDALLFATSVAVGITPQMLPVIVTTSLSQGAKDLARRQVIVKELPAIQNLGAMDVLCCDKTGTLTEDRIVLERYLNTDGNEDARVLRHAFLNSFFQTGLKNLIDLAVIDRADVTPSTVVPDSMLDQSLRDRYTKVDEVPFDFSRRRLSVVVADAQGKTQMVTKGAAEEMLEICSFVEIDGIAQPLTDEKLAQIRKQVAGLNAEGLRVIAVAQKTNPRCVGEFGIADECDMVLMGFLAFLDPPKASAAGAVATLEAKGVAVKVLTGDNDRVAATVCEQIGIDASNVLLGSEIDALDDAELAKRAEKTHLFAKLSPLQKARLVRVMREMLGHTVGFMGDGINDAAAMRASDCGISVDSAVDIAKESADIILLQKDLGVLERGIIEGRRTYGNLLKYLKTTVSSNFGNVLSVTVASLFLPFLPMSALQLVLLSLVYEIVCIALPWDTVDDAWTARPRAWDAASIKGFMLELGPVSSLFDIVTFAALFFVVCPAAVDASWSELAAAGDVAGMATFAALFQSGWFVESMWSQTLVVHMLRSPHLPSPRDHAAPALCVLTVLGLALVTWLPASPIADVLGLMPLPTSFFGLLIGIVIAYIALTQLAKCRYIARHGELL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage