CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP040765	Paracoccus sp. 2251 plasmid unnamed1, complete sequence	0 crisprs	csa3	0	3
NZ_CP040762	Paracoccus sp. 2251 plasmid unnamed2, complete sequence	0 crisprs	NA	0	2
NZ_CP040757	Paracoccus sp. 2251 plasmid unnamed10, complete sequence	0 crisprs	NA	0	0
NZ_CP040761	Paracoccus sp. 2251 plasmid unnamed5, complete sequence	0 crisprs	csa3	0	1
NZ_CP040764	Paracoccus sp. 2251 plasmid unnamed3, complete sequence	0 crisprs	NA	0	0
NZ_CP040758	Paracoccus sp. 2251 plasmid unnamed7, complete sequence	1 crisprs	NA	2	1
NZ_CP040763	Paracoccus sp. 2251 plasmid unnamed4, complete sequence	0 crisprs	NA	0	0
NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	2 crisprs	cas3,csc1gr5,csc2gr7,cas10d	75	1
NZ_CP040756	Paracoccus sp. 2251 plasmid unnamed9, complete sequence	0 crisprs	NA	0	0
NZ_CP040760	Paracoccus sp. 2251 plasmid unnamed6, complete sequence	0 crisprs	NA	0	0
NZ_CP038439	Paracoccus sp. 2251 chromosome, complete genome	0 crisprs	csa3,DEDDh	0	5

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

66 : 42006

Acidithiobacillus_phage(33.33%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_139616468.1\|66_1101_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_139616680.1\|2300_3653_+\|transposase	IS5 family transposase	K4ICS3	Acidithiobacillus_phage	1.6e-51	46.1
WP_139616469.1\|4108_4525_+	hypothetical protein	NA	NA	NA	NA
WP_139616470.1\|4529_6101_+	AAA family ATPase	NA	NA	NA	NA
WP_139616471.1\|6097_6844_+	hypothetical protein	NA	NA	NA	NA
WP_139616472.1\|6846_7227_+	response regulator	NA	NA	NA	NA
WP_139616473.1\|10225_11071_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	1.7e-51	48.9
WP_139616474.1\|11224_11479_+\|transposase	transposase	NA	NA	NA	NA
WP_135818143.1\|11490_12255_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	9.3e-65	51.2
WP_135312179.1\|13125_14397_+\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	1.5e-99	48.5
WP_139616681.1\|14575_15490_-	family 16 glycosylhydrolase	NA	NA	NA	NA
WP_139616475.1\|15537_16635_-	glycosyltransferase	NA	NA	NA	NA
WP_139616682.1\|16631_17801_-	glycosyltransferase	NA	NA	NA	NA
WP_139616476.1\|17970_19695_-	hypothetical protein	NA	NA	NA	NA
WP_139616477.1\|19691_21710_-	glycosyltransferase	NA	NA	NA	NA
WP_139616478.1\|21706_23119_-	hypothetical protein	NA	NA	NA	NA
WP_139616479.1\|23864_24635_-	sugar transferase	NA	NA	NA	NA
WP_139616480.1\|27030_28167_-	glycosyltransferase	NA	NA	NA	NA
WP_139616481.1\|28163_30836_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA
WP_139616482.1\|31534_32587_+	glycosyltransferase	NA	NA	NA	NA
WP_139616483.1\|32628_33882_+	sugar transporter	NA	NA	NA	NA
WP_139616683.1\|33882_35316_-	oligosaccharide flippase family protein	NA	NA	NA	NA
WP_139616484.1\|35315_36458_-	acyltransferase family protein	NA	NA	NA	NA
WP_139616485.1\|37271_37991_+	hypothetical protein	NA	NA	NA	NA
WP_139616486.1\|38276_39710_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	2.6e-52	29.1
WP_139616487.1\|39887_41026_-\|transposase	IS3 family transposase	B6DZX3	Stx2-converting_phage	6.5e-22	32.0
WP_139616488.1\|41076_42006_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_2

93148 : 139084

Mycobacterium_phage(36.36%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_135312179.1\|93148_94420_-\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	1.5e-99	48.5
WP_139616530.1\|95029_95308_+	metal-sensing transcriptional repressor	NA	NA	NA	NA
WP_139616531.1\|95304_96234_+	CDF family Co(II)/Ni(II) efflux transporter DmeF	NA	NA	NA	NA
WP_139616532.1\|97241_98219_+	hypothetical protein	NA	NA	NA	NA
WP_139616533.1\|98215_99520_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_139616534.1\|99471_101694_+	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	4.0e-31	28.1
WP_139616535.1\|101635_103210_+	HAMP domain-containing protein	W8CYF6	Bacillus_phage	1.4e-19	28.2
WP_139616536.1\|103220_103892_+	response regulator	W8CYM9	Bacillus_phage	9.1e-32	35.5
WP_139616537.1\|103988_105512_-	ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_135817455.1\|105511_106564_-	dethiobiotin synthase	NA	NA	NA	NA
WP_139616538.1\|106593_107394_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_139616539.1\|107598_108297_-	hypothetical protein	NA	NA	NA	NA
WP_135817458.1\|108347_108839_-	RNA polymerase sigma factor	NA	NA	NA	NA
WP_139616540.1\|108747_109290_-	hypothetical protein	NA	NA	NA	NA
WP_139616541.1\|109342_110452_+	S8 family serine peptidase	A0A1V0SBG2	Catovirus	3.1e-08	27.9
WP_135312181.1\|110922_112359_-\|transposase	IS1182 family transposase	NA	NA	NA	NA
WP_139616106.1\|113530_113758_-	WGxxGxxG-CTERM domain-containing protein	NA	NA	NA	NA
WP_139616542.1\|113822_114212_+	hypothetical protein	NA	NA	NA	NA
WP_139616543.1\|114465_115521_+	polysaccharide pyruvyl transferase family protein	NA	NA	NA	NA
WP_139616544.1\|116147_116756_+	polysaccharide pyruvyl transferase family protein	NA	NA	NA	NA
WP_139616545.1\|117118_117364_+	hypothetical protein	NA	NA	NA	NA
WP_139616546.1\|117555_117945_+\|transposase	transposase	NA	NA	NA	NA
WP_139616547.1\|117941_118295_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	5.0e-13	34.7
WP_135314267.1\|119301_120368_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_135312179.1\|120897_122169_+\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	1.5e-99	48.5
WP_139616693.1\|122673_123093_-	response regulator	NA	NA	NA	NA
WP_139616548.1\|123206_124244_-	sensor histidine kinase	NA	NA	NA	NA
WP_139616549.1\|124243_124786_-	transcriptional regulator	NA	NA	NA	NA
WP_139616550.1\|126823_127540_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_139616104.1\|130354_131605_+\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	5.4e-102	48.6
WP_139616551.1\|131933_133421_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_139616552.1\|133417_134182_+	ATP-binding protein	A0A059NT77	Lactococcus_phage	6.5e-42	39.3
WP_139616553.1\|134878_135163_-	integration host factor subunit beta	M4SRV7	Rhodobacter_phage	6.8e-05	33.3
WP_135819359.1\|135441_135849_-	BLUF domain-containing protein	NA	NA	NA	NA
WP_135312179.1\|137812_139084_-\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	1.5e-99	48.5

DBSCAN-SWA_3

203700 : 255042

Bacillus_phage(20.0%)

holin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_135819204.1\|203700_204102_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_139616609.1\|204094_204724_-	hypothetical protein	NA	NA	NA	NA
WP_139616702.1\|205309_205726_+	hypothetical protein	NA	NA	NA	NA
WP_139616610.1\|205829_206675_-	DUF2382 domain-containing protein	NA	NA	NA	NA
WP_139616611.1\|206689_207004_-	integration host factor subunit beta	A7KV42	Bacillus_phage	3.5e-10	38.4
WP_139616612.1\|207519_208119_-	response regulator	NA	NA	NA	NA
WP_135314351.1\|211973_213040_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_139616613.1\|213589_213784_+	hypothetical protein	NA	NA	NA	NA
WP_139616614.1\|214153_214354_+\|transposase	transposase	NA	NA	NA	NA
WP_139616615.1\|214545_214773_-	WGxxGxxG-CTERM domain-containing protein	NA	NA	NA	NA
WP_139616616.1\|215182_215698_+	hypothetical protein	NA	NA	NA	NA
WP_139616703.1\|216062_216350_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_139616617.1\|216349_216760_-	cupin domain-containing protein	NA	NA	NA	NA
WP_139616618.1\|216756_217020_-	hypothetical protein	NA	NA	NA	NA
WP_139616619.1\|217639_219139_+	FAD-dependent oxidoreductase	A0A2P0ZL82	Lactobacillus_phage	6.4e-33	28.0
WP_139616620.1\|219120_219855_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_139616621.1\|219851_220955_-	isocitrate/isopropylmalate dehydrogenase family protein	NA	NA	NA	NA
WP_139616622.1\|220951_221734_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_139616623.1\|221730_222561_-	alpha/beta fold hydrolase	A0A222ZQ08	Mycobacterium_phage	5.3e-05	27.2
WP_139616624.1\|222617_223706_-	tricarboxylate transporter	NA	NA	NA	NA
WP_139616625.1\|223758_224811_-	Ldh family oxidoreductase	NA	NA	NA	NA
WP_139616626.1\|224923_225844_+	FCD domain-containing protein	NA	NA	NA	NA
WP_139616627.1\|225840_226923_-	AbrB family transcriptional regulator	NA	NA	NA	NA
WP_139616704.1\|226993_227659_+	FCD domain-containing protein	NA	NA	NA	NA
WP_139616628.1\|228048_228345_+	hypothetical protein	NA	NA	NA	NA
WP_139616629.1\|228407_229502_-	4-oxalomesaconate tautomerase	NA	NA	NA	NA
WP_139616630.1\|229563_231564_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA
WP_139616631.1\|231766_232867_-	tricarboxylate transporter	NA	NA	NA	NA
WP_139616632.1\|232965_234378_-	sensor histidine kinase	W8CYF6	Bacillus_phage	1.8e-16	27.5
WP_139616633.1\|234374_235049_-	response regulator	NA	NA	NA	NA
WP_139616634.1\|235171_236284_+	tricarboxylate transporter	NA	NA	NA	NA
WP_139616705.1\|236267_237251_-	D-2-hydroxyacid dehydrogenase family protein	M1HBE3	Paramecium_bursaria_Chlorella_virus	4.1e-12	24.1
WP_139616706.1\|238283_239456_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_139616635.1\|239660_240119_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_139616707.1\|240707_242060_+\|transposase	IS5 family transposase	K4ICS3	Acidithiobacillus_phage	3.0e-50	44.9
WP_139616636.1\|242135_242729_-	DUF1403 family protein	NA	NA	NA	NA
WP_139616637.1\|244688_244925_-	hypothetical protein	NA	NA	NA	NA
WP_139616708.1\|245041_245635_-	SOS response-associated peptidase	A0A291AUP1	Sinorhizobium_phage	1.7e-29	43.8
WP_139616638.1\|245819_246578_+	damage-inducible protein	NA	NA	NA	NA
WP_139616639.1\|246645_247014_+	hypothetical protein	NA	NA	NA	NA
WP_139616640.1\|247323_248535_-	replication initiation protein RepC	L7TKN6	Rhizobium_phage	7.4e-24	30.4
WP_139616641.1\|248748_249669_-	ParB/RepB/Spo0J family partition protein	A0A240F4U0	Ochrobactrum_phage	7.9e-18	30.6
WP_139616642.1\|249652_250846_-	plasmid partitioning protein RepA	A0A240F4U1	Ochrobactrum_phage	2.5e-117	54.3
WP_139616643.1\|250994_252161_-	DUF4143 domain-containing protein	NA	NA	NA	NA
WP_139616095.1\|253398_255042_-\|transposase	transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP040762

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

8354 : 62392

Mycobacterium_phage(23.08%)

transposase,integrase

attL 15179:15198|attR 56416:56435

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_139615942.1\|8354_9326_-\|transposase	IS481 family transposase	A0A0M3LR35	Mannheimia_phage	4.6e-08	27.0
WP_139615943.1\|9410_10286_+	GAF domain-containing protein	NA	NA	NA	NA
WP_139615944.1\|10312_11371_-	GAF domain-containing protein	NA	NA	NA	NA
WP_139615945.1\|11694_13209_+	PAS domain-containing protein	NA	NA	NA	NA
WP_139615946.1\|13205_13553_+	response regulator	NA	NA	NA	NA
WP_135818143.1\|14923_15688_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	9.3e-65	51.2
15179:15198	attL	NA	NA	NA	NA
WP_139615947.1\|15699_17268_-\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	1.7e-129	47.9
WP_139615948.1\|17982_19575_+	GAF domain-containing protein	NA	NA	NA	NA
WP_139615949.1\|19571_19970_+	response regulator	NA	NA	NA	NA
WP_139615950.1\|20063_20288_+	hypothetical protein	NA	NA	NA	NA
WP_135314267.1\|20672_21739_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_139615951.1\|21855_22140_+	integration host factor subunit beta	M4SRV7	Rhodobacter_phage	6.8e-05	33.3
WP_139615952.1\|22220_22484_+	hypothetical protein	NA	NA	NA	NA
WP_139616099.1\|22830_24192_-\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_139616100.1\|24209_25460_-\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	2.4e-102	48.9
WP_139615953.1\|26451_26637_+	hypothetical protein	NA	NA	NA	NA
WP_139615954.1\|27325_27673_+	DUF883 family protein	NA	NA	NA	NA
WP_139615955.1\|27744_28179_+	acyl-CoA thioesterase	NA	NA	NA	NA
WP_139616101.1\|28223_28376_-	hypothetical protein	NA	NA	NA	NA
WP_136887690.1\|28678_28942_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_139616102.1\|28950_29367_+	PIN domain-containing protein	NA	NA	NA	NA
WP_139615956.1\|29563_29827_+	WGR domain-containing protein	NA	NA	NA	NA
WP_139615957.1\|29823_30309_+	UPF0149 family protein	NA	NA	NA	NA
WP_139615958.1\|30777_31218_-	PIN domain-containing protein	NA	NA	NA	NA
WP_139615959.1\|31202_31448_-	hypothetical protein	NA	NA	NA	NA
WP_139615960.1\|32682_33534_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_139615961.1\|33521_34370_-	alpha/beta hydrolase fold domain-containing protein	G1FGF0	Mycobacterium_phage	9.8e-15	33.0
WP_139615962.1\|34418_35504_-	tricarboxylate transporter	NA	NA	NA	NA
WP_139615963.1\|35517_37461_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA
WP_135314351.1\|38047_39114_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_139615964.1\|39555_40338_+	DUF1738 domain-containing protein	A0A1V0EEV1	Caulobacter_phage	1.6e-51	42.4
WP_139615814.1\|40442_41447_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_135312179.1\|42550_43822_-\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	1.5e-99	48.5
WP_139615965.1\|45934_47395_+	EAL domain-containing protein	A0A127AWB9	Bacillus_phage	9.3e-13	33.1
WP_139615966.1\|47700_48687_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	6.5e-18	36.0
WP_139615967.1\|48683_48917_-	hypothetical protein	NA	NA	NA	NA
WP_139615968.1\|49226_52535_+	PAS domain S-box protein	A0A127AWB9	Bacillus_phage	4.4e-10	30.4
WP_139615969.1\|52888_55840_+	PAS domain-containing protein	NA	NA	NA	NA
WP_139615970.1\|55817_56201_+	response regulator	NA	NA	NA	NA
WP_139615971.1\|56922_58152_+	GAF domain-containing protein	NA	NA	NA	NA
56416:56435	attR	NA	NA	NA	NA
WP_139615972.1\|58272_59277_-	hypothetical protein	NA	NA	NA	NA
WP_136887812.1\|59705_59927_-	hypothetical protein	NA	NA	NA	NA
WP_139615973.1\|59929_61582_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	6.0e-101	41.7
WP_136887810.1\|61640_61991_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	7.9e-27	51.4
WP_139615974.1\|61987_62392_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_2

162194 : 200985

Stx2-converting_phage(30.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_139615504.1\|162194_163847_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	2.4e-73	37.2
WP_139615503.1\|163910_164264_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_139615515.1\|164260_164689_-\|transposase	transposase	NA	NA	NA	NA
WP_139616047.1\|165983_166640_-	TenA family transcriptional regulator	NA	NA	NA	NA
WP_139616048.1\|166636_167473_-	BtpA/SgcQ family protein	NA	NA	NA	NA
WP_139616049.1\|167505_168387_+	ribokinase	NA	NA	NA	NA
WP_139616050.1\|168395_169157_-	cytoplasmic protein	NA	NA	NA	NA
WP_136887137.1\|169178_170243_-	phosphotriesterase	NA	NA	NA	NA
WP_136887138.1\|170239_171241_-	ABC transporter permease	NA	NA	NA	NA
WP_136887139.1\|171240_172011_-	sugar ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	5.6e-17	26.2
WP_139616051.1\|172010_172940_-	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_139616052.1\|172942_173986_-	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_139616053.1\|174689_175646_+	hypothetical protein	NA	NA	NA	NA
WP_139616054.1\|175813_176857_-	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_139616055.1\|176856_177369_-	gluconate kinase	NA	NA	NA	NA
WP_139616056.1\|177400_178885_-	hypothetical protein	NA	NA	NA	NA
WP_135816459.1\|178960_179911_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_139616057.1\|179969_180455_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA
WP_139616058.1\|180836_181859_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_139616059.1\|182198_182432_-	hypothetical protein	NA	NA	NA	NA
WP_139616060.1\|182487_182826_-	TraR/DksA family transcriptional regulator	NA	NA	NA	NA
WP_139616061.1\|182911_183766_-	universal stress protein	A0A2H4J154	uncultured_Caudovirales_phage	2.5e-50	40.4
WP_139616062.1\|183779_185276_-	STAS domain-containing protein	A0A2H4J153	uncultured_Caudovirales_phage	2.9e-163	62.9
WP_135816197.1\|185422_186016_-	NYN domain-containing protein	NA	NA	NA	NA
WP_139616104.1\|186400_187651_-\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	5.4e-102	48.6
WP_139616105.1\|187921_189019_+	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	4.8e-30	35.5
WP_139616063.1\|189002_189368_+	hypothetical protein	NA	NA	NA	NA
WP_139616064.1\|189670_190600_+	glycosyltransferase family 8 protein	NA	NA	NA	NA
WP_139616065.1\|190612_191695_+	polysaccharide pyruvyl transferase family protein	NA	NA	NA	NA
WP_139616066.1\|192394_192553_+\|transposase	transposase	NA	NA	NA	NA
WP_135819381.1\|192784_193060_+	HU family DNA-binding protein	A3E2K9	Sodalis_phage	8.1e-11	42.7
WP_139616067.1\|194283_194559_+	hypothetical protein	NA	NA	NA	NA
WP_139616068.1\|195024_195654_-	histidine phosphatase family protein	NA	NA	NA	NA
WP_139616069.1\|195845_196652_-	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA
WP_139616070.1\|196677_197478_-	phosphonate ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.4e-31	36.6
WP_139616071.1\|197495_198383_-	phosphate/phosphite/phosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_139616072.1\|198634_200191_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	5.5e-96	41.7
WP_136886773.1\|200245_200599_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	3.8e-13	34.7
WP_139616073.1\|200595_200985_-\|transposase	transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP040761

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

46226 : 53662

Ochrobactrum_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_139615791.1\|46226_47306_-	DUF4172 domain-containing protein	D7RWK9	Brochothrix_phage	4.0e-05	36.6
WP_135816872.1\|47525_48710_+	plasmid partitioning protein RepA	A0A240F4U1	Ochrobactrum_phage	7.5e-130	59.1
WP_139615792.1\|48709_49630_+	plasmid partitioning protein RepB	A0A240F4U0	Ochrobactrum_phage	1.5e-45	37.6
WP_139615793.1\|49803_50970_+	replication initiation protein RepC	L7TKN6	Rhizobium_phage	2.7e-15	27.5
WP_139615922.1\|51091_52558_-	mannitol dehydrogenase family protein	G9E6E2	Micromonas_pusilla_virus	1.4e-48	27.9
WP_139615794.1\|52648_53662_-	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	6.2e-24	32.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP040759

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP040759_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040759_1

18948-19049

TypeI-D

Consensus_repeat	Method
CTCCTAACCCCTCGTGGGGAACGGG	CRISPRCasFinder

1 spacers

cas3,csc1gr5,csc2gr7,cas10d

The CRISPR arrays of NZ_CP040759_1

>merge|NZ_CP040759|1|18948-19049|CRISPRCasFinder
CTCCTAACCCCTCGTGGGGAACGGGAACGGGAACGGGGACGGCGCGGCACGCCCATCGCCAAGGGCAGCGATTACACCTCCTAACCCCTCATGGGGAACGGG

>NZ_CP040759|1|1|18948-19049|CRISPRCasFinder
CTCCTAACCCCTCGTGGGGAACGGG	AACGGGAACGGGGACGGCGCGGCACGCCCATCGCCAAGGGCAGCGATTACAC
CTCCTAACCCCTCATGGGGAACGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040759.1\|WP_139615600.1\|18265_18808_+\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|239737
NZ_CP040759.1\|WP_139615607.1\|28067_29069_-\|type-I-D-CRISPR-associated-protein-Cas7/Csc2	csc2gr7	cd09709_csc2gr7_CAS-I-D	gnl\|CDD\|187840
NZ_CP040759.1\|WP_139615598.1\|15508_17167_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|319753
NZ_CP040759.1\|WP_139615602.1\|20699_20894_-\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	unknown	unknown	gnl\|CDD\|377551
NZ_CP040759.1\|WP_139615639.1\|17719_17962_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	unknown	unknown	gnl\|CDD\|226136
NZ_CP040759.1\|WP_139615604.1\|22458_22848_-\|transposase	unknown	unknown	gnl\|CDD\|366690
NZ_CP040759.1\|WP_139615593.1\|9508_9730_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040759.1\|WP_139615603.1\|22273_22462_-\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	unknown	unknown	gnl\|CDD\|377551
NZ_CP040759.1\|WP_139615596.1\|12256_13231_-\|chemotaxis-protein-CheB	unknown	unknown	gnl\|CDD\|319752
NZ_CP040759.1\|WP_139615597.1\|13655_15464_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|226434
NZ_CP040759.1\|WP_135312179.1\|20939_22211_-\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|307151
NZ_CP040759.1\|WP_139615609.1\|32001_32706_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273848
NZ_CP040759.1\|WP_139615605.1\|25355_27389_-\|DEAD/DEAH-box-helicase	cas3	cd09710_cas3_CAS-I-D	gnl\|CDD\|214692
NZ_CP040759.1\|WP_139615601.1\|19088_20645_-\|IS66-family-transposase	unknown	unknown	gnl\|CDD\|376980
NZ_CP040759.1\|WP_135818698.1\|13274_13655_-\|response-regulator	unknown	unknown	gnl\|CDD\|381122
NZ_CP040759.1\|WP_139615594.1\|10544_10751_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040759.1\|WP_139615608.1\|29077_31990_-\|hypothetical-protein	cas10d	mkCas0140_cas10d_CAS-I-D	unknown
NZ_CP040759.1\|WP_139615595.1\|11326_11821_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040759.1\|WP_139615599.1\|17951_18269_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|226194
NZ_CP040759.1\|WP_139615606.1\|27381_28068_-\|hypothetical-protein	csc1gr5	mkCas0176_csc1gr5_CAS-I-D	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP040759.1\|WP_139615600.1\|18265_18808_+\|recombinase-family-protein	gnl\|CDD\|239737	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1.	5.16286e-56
NZ_CP040759.1\|WP_139615607.1\|28067_29069_-\|type-I-D-CRISPR-associated-protein-Cas7/Csc2	gnl\|CDD\|187840	cd09709, Csc2_I-D, CRISPR/Cas system-associated protein Csc2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; predicted Cas7 ortholog; also known as Cse1 family.	5.62321e-10
NZ_CP040759.1\|WP_139615598.1\|15508_17167_-\|hypothetical-protein	gnl\|CDD\|319753	cd16434, CheB-CheR_fusion, Chemotaxis response regulator protein-glutamate methylesterase, CheB, fused with CheR domain. This family contains the methylesterase CheB (EC 3.1.1.61; also known as CheB methylesterase, chemotaxis-specific methylesterase, methyl-accepting chemotaxis protein methyl-esterase, or protein methyl-esterase) domain, a phosphorylation-activated response regulator involved in reversible modification of bacterial chemotaxis receptors, fused with a CheR domain as well as other domains. Signaling output of the chemotaxis receptors is modulated by CheB and methyltransferase CheR by controlling the level of receptor methylation. cheB and cheR are typically found in the same operon. However, CheB and CheR are fused in multi-domain proteins in this subgroup. The CheR protein/domain includes an all-alpha N-terminal domain and an S-adenosylmethionine-dependent methyltransferase C-terminal domain. Reversible methylation of transmembrane chemoreceptors plays an important role in ligand-dependent signaling and cellular adaptation in bacterial chemotaxis. Phosphorylated CheB catalyzes deamidation of specific glutamine residues in the cytoplasmic region of the chemoreceptors and demethylation of specific methyl glutamate residues introduced into the chemoreceptors by CheR.	5.39152e-100
NZ_CP040759.1\|WP_139615602.1\|20699_20894_-\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	gnl\|CDD\|377551	pfam05717, TnpB_IS66, IS66 Orf2 like protein. This protein is found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition.	2.15538e-23
NZ_CP040759.1\|WP_139615639.1\|17719_17962_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	gnl\|CDD\|226136	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription].	2.84194e-14
NZ_CP040759.1\|WP_139615604.1\|22458_22848_-\|transposase	gnl\|CDD\|366690	pfam01527, HTH_Tnp_1, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.	2.81965e-13
NZ_CP040759.1\|WP_139615601.1\|19088_20645_-\|IS66-family-transposase	gnl\|CDD\|376980	pfam03050, DDE_Tnp_IS66, Transposase IS66 family. Transposase proteins are necessary for efficient DNA transposition. This family includes IS66 from Agrobacterium tumefaciens.	2.43491e-115
NZ_CP040759.1\|WP_139615597.1\|13655_15464_-\|PAS-domain-S-box-protein	gnl\|CDD\|226434	COG3920, COG3920, Signal transduction histidine kinase [Signal transduction mechanisms].	6.80966e-44
NZ_CP040759.1\|WP_139615609.1\|32001_32706_-\|hypothetical-protein	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	2.33573e-09
NZ_CP040759.1\|WP_139615605.1\|25355_27389_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|214692	smart00487, DEXDc, DEAD-like helicases superfamily.	9.63748e-14
NZ_CP040759.1\|WP_139615596.1\|12256_13231_-\|chemotaxis-protein-CheB	gnl\|CDD\|319752	cd16433, CheB, Chemotaxis response regulator protein-glutamate methylesterase, CheB. This family contains the methylesterase CheB (EC 3.1.1.61; also known as CheB methylesterase, chemotaxis-specific methylesterase, methyl-accepting chemotaxis protein methyl-esterase, or protein methyl-esterase) domain, a phosphorylation-activated response regulator involved in reversible modification of bacterial chemotaxis receptors. Signaling output of the chemotaxis receptors is modulated by CheB and methyltransferase CheR by controlling the level of receptor methylation. cheR and cheB have a strong preference to occur in the same operon, and a subgroup contains multidomain proteins with CheB-CheR fusions. Reversible methylation of transmembrane chemoreceptors plays an important role in ligand-dependent signaling and cellular adaptation in bacterial chemotaxis. Phosphorylated CheB catalyzes deamidation of specific glutamine residues in the cytoplasmic region of the chemoreceptors and demethylation of specific methyl glutamate residues introduced into the chemoreceptors by CheR.	1.75036e-80
NZ_CP040759.1\|WP_135818698.1\|13274_13655_-\|response-regulator	gnl\|CDD\|381122	cd17586, REC_PFxFATGY, phosphoacceptor receiver (REC) domain of PFxFATGY motif single-domain (stand-alone) response regulators. This subfamily is composed of stand-alone response regulators (RRs) containing the PFxFATG[G/Y] motif; RRs with such a motif are also called ''FAT GUY'' response regulators. Included in this subfamily are Sphingomonas melonis SdrG, Sinorhizobium meliloti Sma0114, and Erythrobacter litoralis EL_LovR. SdrG is involved in the control of the general stress response. Sma0114 is part of the Sma0113/Sma0114 two-component system (TCS) that is involved in catabolite repression and polyhydroxy butyrate synthesis. EL_LovR is involved in a light-regulated TCS. PFxFATG[G/Y] RRs are typically associated with histidine-tryptophan-glutamate (HWE) histidine kinases that constitute a subclass of the larger histidine kinase superfamily characterized by an altered ATP binding site, which lacks the F-box that is normally an integral component of the ATP lid. The PFxFATG[G/Y] motif is involved in conformational changes after phosphorylation that results in the activation of the RR. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	3.27482e-31
NZ_CP040759.1\|WP_135312179.1\|20939_22211_-\|IS256-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	3.21519e-57
NZ_CP040759.1\|WP_139615603.1\|22273_22462_-\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	gnl\|CDD\|377551	pfam05717, TnpB_IS66, IS66 Orf2 like protein. This protein is found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition.	2.70258e-20
NZ_CP040759.1\|WP_139615599.1\|17951_18269_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	5.80494e-23

>NZ_CP040759.1|WP_139615600.1|18265_18808_+|recombinase-family-protein
MILGYARVSTVDQNLDSQRDALATAGAERIFADTISGTVRARPALDELMKQLRAGDVIVVTKYDRLARSLKDLLELVDQIKAQGAGFRSLAEDIDTTTPAGRLVFHVFASIAQFERERISERTREGLEAARRRGRVGGRPPALSPAQRAEVRRMRDEEHRPLPEIAQLFRVSTKTVRRVI
>NZ_CP040759.1|WP_139615599.1|17951_18269_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MGTEHSCTLRLTFRAEADMEDIWLHGAAEWSPEQADRYVDGITAVLDLLCAMPGIARKRLEFTPPVRIHPSGIHLIIYRTVGDHLDVLRILGGRQDWQRLLEMLE
>NZ_CP040759.1|WP_139615639.1|17719_17962_+|type-II-toxin-antitoxin-system-ParD-family-antitoxin
MATMNVSIPDPMKAWVEERARGGSFSNASDYVRHLIRRDQERSQAIGQLQAAITEGLQSGEPRSFDATAFKARMRSKHGD
>NZ_CP040759.1|WP_139615598.1|15508_17167_-|hypothetical-protein
MRDKAERATPPGLIVGIGASAGGLEAFTAFFAHLPPDSGMAFVLVQHLSPDHKSMLTEILDRASPIPVVEAQDGMRVEPNRVHVIPPDATLTIEDGRLLVVRPAPARADRRPIDSFFISLARDQGDNAVSIVLSGVGSDGSVGLTAVKESGGLTIAQAEFDHHAMPGMPQSAAATGHVDYILQVEEMPASLIDYRDHLALVADRKDGDGTRIDAAEHLATVLAVLRAKTGHDFSKYKIKTVTRRIQRRMQVLQADTVPAYIKHLREDPAEPELLFRDLLIGVTEFFRDPKAFQGLSAAIDALLSRSEGTRSLRVWVPACSTGEEVYSLAVTIRELIDARGTGLDVQIFGTDIDDRAIEFARAGRYQRTVGISPERLERWFFEDNGAYYPSRQIREMCVFSVHNVTKDPPFSKLDLLSCRNLMIYLDGELQDRVLRTFHYALKPDGLLFLGQSEGVSGHAKLFSVQDKAAHIFQRQDGDAAFPTLPMPPQVQAPNRPASDVGGGSGDRVDRAVRLALAKHSPAFLVVDRHSNILRYSGGKLPGIWSPQPVRQV
>NZ_CP040759.1|WP_139615597.1|13655_15464_-|PAS-domain-S-box-protein
MALQSVMKTGEGVIADDVPISVDGTQRLLRVIVEPVQGTGSEGLYAIAFQDVHAAATEASPAADGSLQSTEALAAQQELRTVREQLQATIVDLETANEEMKSSAEEYQSVNEELQSANEELQTSKEEMQSINEELQTVNAEMMAKNDLLSNLNSDLQNLLDSTQIATIFLDGNLRIKNFTPGMADIFSLRESDRGRPLTDIVSLLAYDDLRRDAAKVLRELTVIERELELQDRGASFVMRIRPYRSIEQVIDGVVITFVDVTGRKKAERARGVSERRFAAIVGQAAVGVAETDLTGRFLLSNTAFETMTGRSAEDLRRLRRHELIEPDDAQEIGERFRQAIKDGQPFEAEYRLKRADGTTAWVHDSISVLDEGDAHTNSVISVTLEIGERKRAEEQATLLLGELDHRVKNILAIVSSIVAQALKANPSPEMFAETIGARITAITRAHSLLTNGGGGGTGTLRDLIETELRPYEDRDLRVEGPDIVLTPKAGLSVAMAIHELASNAVKYGSLSDTRGALTVSWEVTDDPDRRLQLSWIETGGPTLSSPPVKRGFGTTVIERSLSYEFNAKVDRAFPASGVVCIIELPLTPGVGELRSPDRRGK
>NZ_CP040759.1|WP_135818698.1|13274_13655_-|response-regulator
MVDRQSAKDRRVLVVEDELLIVLVIEDTLTDLGAEVVGPVAHLDAALRLAAEASIDAAILDVNIREGNSYAVADVLAERGIPFVFCSGYSDWALEERHRDRPRLNKPYTSKELEEQVLELLGGASG
>NZ_CP040759.1|WP_139615596.1|12256_13231_-|chemotaxis-protein-CheB
MTGREIIVIGGSAGSVEVIRQICRALPADLRAPVLIAVHVGAGHQNLLASILDSGGPHPASTAVDGEPLQPGRIYVAPSDHHLVIDGRILRLGRGPRENMARPAIDPLFRSAGISFGPRAIGVLLSGMLNDGASGLADLKRCGGVTVVQSPLDAVESEMPRTALLASDIDYRASAAELADVLSRLVNEEPGPAPVPPPSVALEVAIAMGRPSDSSTMAKIADPVPLNCPGCGGTLSQIRRSPLRFRCQVGHGYTAEALAHEQEGSVDEAIRIALRVIGERADLMEKMAIDALQAGRTAAAATFEERADEYRRSAGVLTDAALRG
>NZ_CP040759.1|WP_139615595.1|11326_11821_+|hypothetical-protein
MKPGIIVLMALLGSPVWAQQELKSINNTVADIGDDLNATAYMSSRCAGLFDGVIAYGGQNMAENVVEQYRQDSVDLTIGTILIRMRQAEGWGLPAKDLNGEMENSLGETVRFSDMYEARFSTNYQLTGTMMERDQVAIDDLDLCDEIAPRMRSLVINMLGEAAN
>NZ_CP040759.1|WP_139615594.1|10544_10751_+|hypothetical-protein
MRHNPGAFAPASVQDTEPFLDLLVQMNPDTLRKLAAMCEARQGGLEVMAEPLRAYADQQARSTAGSAA
>NZ_CP040759.1|WP_139615593.1|9508_9730_+|hypothetical-protein
MDKRAMLIAELDEKSCVAWLWRADPGKQPKPVKNAAACLREIDNVILFGAAKPEIEAWLQEQSDQQATFPREL
>NZ_CP040759.1|WP_139615601.1|19088_20645_-|IS66-family-transposase
MFAASVLDLSAIPNAQRAAVQALLEEVAALKDITRRQEHLIAELNHALHGKRSEKLTEDERQLAFEDLSIALAEVEASRETQATRTDKGATRPAPKRNIGNLPAALPRIEEVIEPASLICPCGCGIMHKIGEDRSERLDIVPAQLRVIVTVRPKYACRSCTDGVTQAPAPSRLITGGLPTEATLAHVLVSKYADHLPLYRQSQILARAGLDLHRAVLADWVGKAAFHLTPVVDRLAEHLKRSGKLFMDETTAPVLDPGRGTTKTGYLWALARDDRPWGGEDPPGVVYFYAPGRAGENAETFLTGFDGILQIDGYTGYNRLTKPIRKGGAPIRIAHCWAHARRKLKEVFDRDGSEIAAEGLRRIAELYAVEADIRGVSPGQRLSARQARTAPLVAAFGGWLQAQRRKISTKSRLGEKLTYIHNHWEGLQAFLTDGRIEIDSNRVENLIRPITLNRKNALFAGHDEGGVAWGRIASLIETCKINGIEPFAYLKATLTAIATGHPQSRLDDLLPWNFKPSS
>NZ_CP040759.1|WP_139615602.1|20699_20894_-|IS66-family-insertion-sequence-element-accessory-protein-TnpB
MKLLYWDGTGLVMAYKRLEDTTFTWPAIKDGIMALNHAQFEALFAGLDWRKVKALETRPPAAAE
>NZ_CP040759.1|WP_135312179.1|20939_22211_-|IS256-family-transposase
MEDDITITPLHQPGSVVDPLTEIARDGARQMLAAALRAEAASFVAQFAEERLPDGRQRVVHHGTGPERNIQTGIGPIPVQRQKVRDRAADAPPEDKIRFNSRILPKWARRSPSLDALLPVLYLRGVSTGDFQEALSALVGPDAPNLSPGAISRLTGEWQAEHDRWQRRNLSARRYVYVWADGVYLQARMEPQAECMLVIIGATPEGKKELLGFQVGVRESAQSWHELLVDLRARGLSAPPDLAVGDGALGFWKALDEIFPDTRHQRCWTHKVSNVLNKLPKSMHPAVKTDLREIWQAATRAAAETAVNTFVEKYGVKYEKAVACLTKDREALLAFYDFPAAHWDHLRTSNPIESVFATVRHRTVRTKGALSQKTAKLMVFKLVQAAAKKWRRLKGANQLPLVVEGVKFTDGVAEQDANESRAA
>NZ_CP040759.1|WP_139615603.1|22273_22462_-|IS66-family-insertion-sequence-element-accessory-protein-TnpB
MIFPSNRVRIMVATKPVDFRKGHDGLAALVSSVLRKDPFTGTVFVFRSRRADELWPILGDGV
>NZ_CP040759.1|WP_139615604.1|22458_22848_-|transposase
MESALELLPAGGRGRRNRKWPDEVKARIVAETLMPGVTVNTVARRHGVPANHVSSWRTLARKGRLVLPAPEDPVEFAALLLGPAEDAPRADVGAVARPEIVAGAVVIRLEVGASAERIAMVVRALAATP
>NZ_CP040759.1|WP_139615605.1|25355_27389_-|DEAD/DEAH-box-helicase
MPEEDRCSFVIPRHAVPVGAEGLSPLQEQMLDAPAPVRIFSAPTGAGKSYAFQVAMRKRGARILFIVPTRRLAQNLAEGLRQDLVDAGMTEDRVLERVGLWTSDEGRRIRAEDPKADVNRHRIREIRMEASLPQEGLMIIATPESVAHYLLRPAFTQGGADVQSIVDLLRLDHVVFDEFHTIEARGMGLSMAIATFLAQDATEAKLTFLSATPIDLVTSFVHFGIPRESILVEAEMVVTGGPEETVGMRAIHGDVTVTFRRDGSMVEALEACRQDILETLSRPSDSKAGQVVLIFDSVRDLQTSKQELAAWFDGIGIGRAERLAISSVDDSTNLDLKGLFMVGRAADPLKFRVLIATASVEMGVTFRAGMILMNPGHDPCSFVQRIGRVARGDMDGQVVVTSFRSEKSELGWFSHIRRQLLTEAPVVPVDRFIDCVLDATRARFDVTERDLDQVDGTFRKMPQSAAWAAALFWCAMEEALVKRGYKGIRNTLRNYRPKKAGAMSAWLGDLGKISLHSAQKWRQAFLREALRLRMISPAVSLVDPDGNRRNVPWHIWASDERLSNMPSRPLDDGRIEVAISTSLEQALSDLSYDRRVRRREEILLPHVGETPLLEADRLVESCLTILRRAEKDHLRAEHRTAREIGERLIRLTRIVPTVERTIDSVNSNDILRSCCTG
>NZ_CP040759.1|WP_139615606.1|27381_28068_-|hypothetical-protein
MTVPDVTPVRATTLSPLHYHSLPVSSGTATIAEFLADRSMSYAIANAMGALSSSVALPRVKDYRRDLEVLPWMASVFTAVNPSLLPQLGKRLNLDTEGGYQKKIMDATGTGNLKTWFYIQEVAPGTIYEGAIFGPDPFRMASEADGREIDYLIIRTGRHLGGIVKLERAPDVKAVRLNAHTAHLFGQDPATDPEMEVDVFALYDMQFTEPKPLEEAARIVGSWRVFDA
>NZ_CP040759.1|WP_139615607.1|28067_29069_-|type-I-D-CRISPR-associated-protein-Cas7/Csc2
MPITDIKPFLGTLDELLFEAQGKDKTYAQPALKNLGSVTLFVLREVISPASFRNADAEITDIEVGGERHVRAVANKFKFGERARGLQILRFLNAGGTLAQNKTVLRKGEKPGDRFDLNTFVFGDSATQDNKFLPVKAAAQYSDAVSLQDYGSSVDRTFHNRASEDGTLFNAETKQPSVNIFERHFVKPSTLLLQTISLNGRTAPAEALEHLLLAISLAGAYGGQTSIYGVNVKNHVVALCGGRFERELASPYAMITALHAAGADISTADAAATAIRGLVEDAWPVVIPGSEIADRQKAMIATLEGDDAEMRTRYLASAGKISSYFNAWFEGIS
>NZ_CP040759.1|WP_139615608.1|29077_31990_-|hypothetical-protein
MIPVSTRLFRDFLGSVIAEHVFSEAEREAHNGPLAVTQQKDIAAGKRIEARTPRLMMMSGKGGYVEGESFKDRLKFRNVTLLDHLTSVTRGAAVFAEIDLRAAGVHEEVLPVRIVRIMATAFLHDADKILDLPRKESEALTAAHIAELMSHYGIAAFLTRYGAQMSAETLLARINAVEISRSDMIAPGMKLLPIEEAKDSLYVRLADRLDGIFLDTTRPIGDVVGELERFEGLRSKDLKQGWTAFSLRSPHTPFLLDELQRAFSVAVYDRKGCPPLVEVHHDGELLLVCQQDVAEEAMEVALNEASKRLRLDLRADINPKGSRDILDSGAEVSDLEEAFRYDSREASKALYVHIRLLNEDAWRQAMAAFFGDLGFAPSLSGIDTFTSKGSKHFQPWFILDENDPRLPILKDAACIVMALGCSEPTSRVLAARVPDAATREQELVTLASELGFDVPEWVVETKHQGSRQSLLAAWIAALGARDPDLRHHVFGFDGLLSLWLCGDGADRAGLFEKIGDPSSRFIEAARKWLDATLRRRFLDAEIGAPFGYCHFTNAPVSAKAVINKKSGIKGLNVSAFSGREGRPESHESAKSLTLVSDFAFAEHRLRTMQAEKTGNFAKDLPANVSSPTAMGLFATLGLSSDLRDAFLDLNHFDLMRLDLKSGRQVYVDRDQYGARKVFARHVGVPARTADLITLIRMMMESALRLGRPVHVFQGMPSPQAGFVHFDILPAALRKAFGGNSFRIEQLPQALFLLGIAEQLCASEMQNVGIEVALRILDPETRFGATCEAILILDRLPDDRAKTLMGLRMALMTIAKKEYAMHAEKDSALINFARAMARVQAAPKRDASNNERSLGLRIALEAVEGCVRIGETSEEAMIAAIAGKLEAEFDRSARLEHRGSFGDRPFPRKSAQDAATIFITQVWPRAFRSRPPVSKDRRIAFAIYQVSFTEESYRPRSGAETPSLETTENGK
>NZ_CP040759.1|WP_139615609.1|32001_32706_-|hypothetical-protein
MRIFIDLHKKPQRVRYCDSMNAAIVAALDKAGIASKDMVGPEAQPWTFGMSGVAREDGFSTITGLTISTPSEIIARGLMQIRPEWIQVHSSNGDVIDCSGARRHLGRLPADGVSELAVFFASPILIKPLGKDPETEWIEEFGSVDFDAAFRRGLERRAGRDMDISFSADPLTLAVGVTRRLVHLRKATNGRKVIVPAFSLPLTMRGHPEDVRFAYMAGLGAKTRAGFGCPILPQ

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Crispr_ID: NZ_CP040759_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040759_2

22971-25271

TypeI-D

Consensus_repeat	Method
NCTCCTAACCCCTCATGGGGAACG	CRT
CTCCTAACCCCTCATGGGGAACGAGGAC	CRISPRCasFinder
CTCCTAACCCCTCATGGGGAACGAGGAC	CRISPRCasFinder
CTCCTAACCCCTCATGGGGAAC	PILER-CR

35 spacers

cas3,csc1gr5,csc2gr7,cas10d

The CRISPR arrays of NZ_CP040759_2

>merge|NZ_CP040759|2|22971-25271|CRT,CRISPRCasFinder,CRISPRCasFinder,PILER-CR
CTCCTAACCCCTCATGGGGAACGGGGACCCATGCCGCCAGCGCGACAGATGCGGCCATGTAGGCCTCCTAACCCCTCATAGGGACCGGGGACCGGATCAACTACGCCACCACCGACGCCGCCTTCGTCCTCTTAACCCCTCGTTGGGAACAGTAATTTGGCTTCTTATCGAAGCACCCGTAGTTGTGGGCGTACTCCTAACCTCTCCTGGGAACGGGAACCCGGATCATCGAGGTAGCCGTCATAGACCGCCTTGATCTCCTAACCCCTTATAGGGAACGGGGACCGACTCGAACGCGGCCATGCAGGCCAACGAGACTCACTCCCAACCCCTTCTGGGAACGGTGACTGCTGCCGCCAGCGTCTACGCCCTTACGGGCTTGGTCGTCCTAACCCCTCATGGGGAACGGGGATTTGGTATCTGCTTGCCGCAATCGTCTATTATATGGACTCCTAATCCCTCGTGGGGAACGAGGACACGAAGTAGGCCTGGCGGGCGACGGGGCGCTGGCAAGGCTCCTAACCCCTCATGGGGAACGAGGACTCTGCCAGCATTACTGGACGAGCGCCAATGGCACCCCGCTCCTAACCCCTCATGGGGAACGAGGACCCCGTTCATCGACGCCCTGATCTCGGGGCTGGAGAAGCTCCTAACCCCTCATGGGGAACGAGGACCAGGTTCGAGACCTGCATGACCTGAAGGCCCCCGGTCTCCTAACCCCTCATGGGGAACGAGGACATGGTCGTCTCGCATATAGACCCTTCCATAGCTACGGCCTCCTAACCCCTCATGGGGAACGAGGACGCCATCGGACGCTGACGCGGTCGTGCATGTCCCCGCCCTCCTAACCCCTCATGGGGAACGAGGACCTGATGGCGGTCCTGCACGCCATGGGCCAGCCCAACACCTCCTAACCCCTCATGGGGAACGAGGACTCGATCAGGTCGTCCTGGTTGGGGTCGGGTCTGCCGAGCTCCTAACCCCTCATGGGGAACGAGGACCACGTCCTCGACGGATTTCAGGCCTGCCTCGCCGCTCTCCTAACCCCTCATGGGGAACGAGGACGCGTCCCGTTTTGCTGCGTTTCAGCCGCAGAAGGCCCCCTCCTAACCCCTCATGGGGAACGAGGACTTGGGCTGATGCGTGACATTATCCGACAGACGGCAGTTCTCCTAACCCCTCATGGGGAACGAGGACTCTATGCCGACCGGCATCTCGCCTCACCCACGAACACCTCCTAACCCCTCATGGGGAACGGGGACAGGGATCACCTGCGAGCCGTCATGCAGACGGATGTACTCCTAACCCCTCATGGGGAACGGGGACGTTCCGTCGAGCACACGACGTTGCCGTCCTCGGTCTCCTCCTAACCCTTCATGGGGAACGGGGACCCGGTTGCGAGAATGACCATGATGAGCCTCCAGTTCGTCTCCTAACCCCACATGGGGAACGGGGACCATCCATTCCTCGCTACATTCCGGCCCGCAAGCCTCTCTCCTAACCCCTCATGGGGAACGGGGACTCAAGCTGGCGGATCTCTGGGAAGAGAAGCTGGACATCTCCTAACCCCTCATGGGAACTGGGACTTAGCTTCCAGACCGGTGGCAAGATGATGAAGTTCCACTCCTAACCCCTCATGGGGAACCAGAACTCAAATCCATGAAGTTAACATGGCTGTGGGCTTCTTCCTCCTAACCCCTCGTGGGGAACGGGGACCGTCGCCATAGTAGATCCCGCGCGCCATGTTGTAGGCCTCCTAGCCCTTATGGGGAACTGGGACTGGCGGCCCAATGCTCGCGGGCGCCCTCCGTCTTGGTCTCCTAACCCCTCATGGGGAGCTGGAACGCGCTCTTTCTCCAGATAGACTAGGTCCTGCCCCGGCTCTTAACCCTTCATGGGGAACTGTGGCGGGGTCTTCTAGCCCCTCCCAATCGGTGTGAGTGGTCTCCTAACCCCTCATGGGGAACTGGGACCAGATAGCGGCGGAACAGGTCGGTGCCCATGGGGACTGCCTCCTAACCCCTCACGGGGAACGGGGACGCGCAGTTGCTTGTTGACGCCTTCCAGTCCGGTCTTCTCCTAACCCCTCATGGGGAACGGGGACTCCGCTGCTGCGTCGTGCGGCAGATACATGCCGCCGAACTCCTAACCCCTCATGGGGAGCGGGGACCTAGCCTCTGACGGGCCTCTCAGCGAAGCTCTATGCATCTCCTAACCCCTCAGGGGGAACGGGGACATGCCTTGAACTGAGTGGTTTCGCCCATTATGAGGGCCTCCTAACCCTTCATGGGGAACTGGGAG

>NZ_CP040759|2|1|22971-25266|CRT
CTCCTAACCCCTCATGGGGAACG	GGGACCCATGCCGCCAGCGCGACAGATGCGGCCATGTAGGC
CTCCTAACCCCTCATAGGGACCG	GGGACCGGATCAACTACGCCACCACCGACGCCGCCTTCGTC
CTCTTAACCCCTCGTTGGGAACA	GTAATTTGGCTTCTTATCGAAGCACCCGTAGTTGTGGGCGTA
CTCCTAACCTCTCCTGGGAACGG	GAACCCGGATCATCGAGGTAGCCGTCATAGACCGCCTTGAT
CTCCTAACCCCTTATAGGGAACG	GGGACCGACTCGAACGCGGCCATGCAGGCCAACGAGACTCA
CTCCCAACCCCTTCTGGGAACGG	TGACTGCTGCCGCCAGCGTCTACGCCCTTACGGGCTTGGTC
GTCCTAACCCCTCATGGGGAACG	GGGATTTGGTATCTGCTTGCCGCAATCGTCTATTATATGGA
CTCCTAATCCCTCGTGGGGAACG	AGGACACGAAGTAGGCCTGGCGGGCGACGGGGCGCTGGCAAGG
CTCCTAACCCCTCATGGGGAACG	AGGACTCTGCCAGCATTACTGGACGAGCGCCAATGGCACCCCG
CTCCTAACCCCTCATGGGGAACG	AGGACCCCGTTCATCGACGCCCTGATCTCGGGGCTGGAGAAG
CTCCTAACCCCTCATGGGGAACG	AGGACCAGGTTCGAGACCTGCATGACCTGAAGGCCCCCGGT
CTCCTAACCCCTCATGGGGAACG	AGGACATGGTCGTCTCGCATATAGACCCTTCCATAGCTACGGC
CTCCTAACCCCTCATGGGGAACG	AGGACGCCATCGGACGCTGACGCGGTCGTGCATGTCCCCGCC
CTCCTAACCCCTCATGGGGAACG	AGGACCTGATGGCGGTCCTGCACGCCATGGGCCAGCCCAACAC
CTCCTAACCCCTCATGGGGAACG	AGGACTCGATCAGGTCGTCCTGGTTGGGGTCGGGTCTGCCGAG
CTCCTAACCCCTCATGGGGAACG	AGGACCACGTCCTCGACGGATTTCAGGCCTGCCTCGCCGCT
CTCCTAACCCCTCATGGGGAACG	AGGACGCGTCCCGTTTTGCTGCGTTTCAGCCGCAGAAGGCCCC
CTCCTAACCCCTCATGGGGAACG	AGGACTTGGGCTGATGCGTGACATTATCCGACAGACGGCAGTT
CTCCTAACCCCTCATGGGGAACG	AGGACTCTATGCCGACCGGCATCTCGCCTCACCCACGAACAC
CTCCTAACCCCTCATGGGGAACG	GGGACAGGGATCACCTGCGAGCCGTCATGCAGACGGATGTA
CTCCTAACCCCTCATGGGGAACG	GGGACGTTCCGTCGAGCACACGACGTTGCCGTCCTCGGTCTC
CTCCTAACCCTTCATGGGGAACG	GGGACCCGGTTGCGAGAATGACCATGATGAGCCTCCAGTTCGT
CTCCTAACCCCACATGGGGAACG	GGGACCATCCATTCCTCGCTACATTCCGGCCCGCAAGCCTCT
CTCCTAACCCCTCATGGGGAACG	GGGACTCAAGCTGGCGGATCTCTGGGAAGAGAAGCTGGACAT
CTCCTAACCCCTCATGGGAACTG	GGACTTAGCTTCCAGACCGGTGGCAAGATGATGAAGTTCCA
CTCCTAACCCCTCATGGGGAACC	AGAACTCAAATCCATGAAGTTAACATGGCTGTGGGCTTCTTC
CTCCTAACCCCTCGTGGGGAACG	GGGACCGTCGCCATAGTAGATCCCGCGCGCCATGTTGTAGG
CCTCCTAGCCCTTATGGGGAACT	GGGACTGGCGGCCCAATGCTCGCGGGCGCCCTCCGTCTTGGT
CTCCTAACCCCTCATGGGGAGCT	GGAACGCGCTCTTTCTCCAGATAGACTAGGTCCTGCCCCGG
CTCTTAACCCTTCATGGGGAACT	GTGGCGGGGTCTTCTAGCCCCTCCCAATCGGTGTGAGTGGT
CTCCTAACCCCTCATGGGGAACT	GGGACCAGATAGCGGCGGAACAGGTCGGTGCCCATGGGGACTGC
CTCCTAACCCCTCACGGGGAACG	GGGACGCGCAGTTGCTTGTTGACGCCTTCCAGTCCGGTCTT
CTCCTAACCCCTCATGGGGAACG	GGGACTCCGCTGCTGCGTCGTGCGGCAGATACATGCCGCCGAA
CTCCTAACCCCTCATGGGGAGCG	GGGACCTAGCCTCTGACGGGCCTCTCAGCGAAGCTCTATGCAT
CTCCTAACCCCTCAGGGGGAACG	GGGACATGCCTTGAACTGAGTGGTTTCGCCCATTATGAGGGC
CTCCTAACCCTTCATGGGGAACT

>NZ_CP040759|2|2|23035-23256|CRISPRCasFinder
CTCCTAACCCCTCATAGGGACCGGGGAC	CGGATCAACTACGCCACCACCGACGCCGCCTTCGTC
CTCTTAACCCCTCGTTGGGAACAGTAAT	TTGGCTTCTTATCGAAGCACCCGTAGTTGTGGGCGTA
CTCCTAACCTCTCCTGGGAACGGGAACC	CGGATCATCGAGGTAGCCGTCATAGACCGCCTTGAT
CTCCTAACCCCTTATAGGGAACGGGGACCGACTCGAACGCGGCCATGCAGGCCAACGAGACTCACTCCCAACCCCTTCTGGGAACGGTGACTGCTGCCGCCAGCGTCTACGCCCTTACGGGCTTGGTCGTCCTAACCCCTCATGGGGAACGGGGAT	TTGGTATCTGCTTGCCGCAATCGTCTATTATATGGA
CTCCTAATCCCTCGTGGGGAACGAGGAC	ACGAAGTAGGCCTGGCGGGCGACGGGGCGCTGGCAAGG
CTCCTAACCCCTCATGGGGAACGAGGAC	TCTGCCAGCATTACTGGACGAGCGCCAATGGCACCCCG
CTCCTAACCCCTCATGGGGAACGAGGAC	CCCGTTCATCGACGCCCTGATCTCGGGGCTGGAGAAG
CTCCTAACCCCTCATGGGGAACGAGGAC	CAGGTTCGAGACCTGCATGACCTGAAGGCCCCCGGT
CTCCTAACCCCTCATGGGGAACGAGGAC	ATGGTCGTCTCGCATATAGACCCTTCCATAGCTACGGC
CTCCTAACCCCTCATGGGGAACGAGGAC	GCCATCGGACGCTGACGCGGTCGTGCATGTCCCCGCC
CTCCTAACCCCTCATGGGGAACGAGGAC	CTGATGGCGGTCCTGCACGCCATGGGCCAGCCCAACAC
CTCCTAACCCCTCATGGGGAACGAGGAC	TCGATCAGGTCGTCCTGGTTGGGGTCGGGTCTGCCGAG
CTCCTAACCCCTCATGGGGAACGAGGAC	CACGTCCTCGACGGATTTCAGGCCTGCCTCGCCGCT
CTCCTAACCCCTCATGGGGAACGAGGAC	GCGTCCCGTTTTGCTGCGTTTCAGCCGCAGAAGGCCCC
CTCCTAACCCCTCATGGGGAACGAGGAC	TTGGGCTGATGCGTGACATTATCCGACAGACGGCAGTT
CTCCTAACCCCTCATGGGGAACGAGGAC	TCTATGCCGACCGGCATCTCGCCTCACCCACGAACAC
CTCCTAACCCCTCATGGGGAACGGGGAC	AGGGATCACCTGCGAGCCGTCATGCAGACGGATGTA
CTCCTAACCCCTCATGGGGAACGGGGAC	GTTCCGTCGAGCACACGACGTTGCCGTCCTCGGTCTC
CTCCTAACCCTTCATGGGGAACGGGGAC	CCGGTTGCGAGAATGACCATGATGAGCCTCCAGTTCGT
CTCCTAACCCCACATGGGGAACGGGGAC	CATCCATTCCTCGCTACATTCCGGCCCGCAAGCCTCT
CTCCTAACCCCTCATGGGGAACGGGGAC	TCAAGCTGGCGGATCTCTGGGAAGAGAAGCTGGACAT
CTCCTAACCCCTCATGGGAACTGGGACT	TAGCTTCCAGACCGGTGGCAAGATGATGAAGTTCCA
CTCCTAACCCCTCATGGGGAACCAGAAC	TCAAATCCATGAAGTTAACATGGCTGTGGGCTTCTTC
CTCCTAACCCCTCGTGGGGAACGGGGAC	CGTCGCCATAGTAGATCCCGCGCGCCATGTTGTAGG
CCTCCTAGCCCTTATGGGGAACTGGGAC	TGGCGGCCCAATGCTCGCGGGCGCCCTCCGTCTTGGT
CTCCTAACCCCTCATGGGGAGCTGGAAC	GCGCTCTTTCTCCAGATAGACTAGGTCCTGCCCCGG
CTCTTAACCCTTCATGGGGAACTGTGGC	GGGGTCTTCTAGCCCCTCCCAATCGGTGTGAGTGGT
CTCCTAACCCCTCATGGGGAACTGGGAC	CAGATAGCGGCGGAACAGGTCGGTGCCCATGGGGACTGC
CTCCTAACCCCTCACGGGGAACGGGGAC	GCGCAGTTGCTTGTTGACGCCTTCCAGTCCGGTCTT
CTCCTAACCCCTCATGGGGAACGGGGAC	TCCGCTGCTGCGTCGTGCGGCAGATACATGCCGCCGAA
CTCCTAACCCCTCATGGGGAGCGGGGAC	CTAGCCTCTGACGGGCCTCTCAGCGAAGCTCTATGCAT
CTCCTAACCCCTCAGGGGGAACGGGGAC	ATGCCTTGAACTGAGTGGTTTCGCCCATTATGAGGGC


>NZ_CP040759|2|3|23356-25271|CRISPRCasFinder
	CGGATCAACTACGCCACCACCGACGCCGCCTTCGTC
CTCTTAACCCCTCGTTGGGAACAGTAAT	TTGGCTTCTTATCGAAGCACCCGTAGTTGTGGGCGTA
CTCCTAACCTCTCCTGGGAACGGGAACC	CGGATCATCGAGGTAGCCGTCATAGACCGCCTTGAT
CTCCTAACCCCTTATAGGGAACGGGGACCGACTCGAACGCGGCCATGCAGGCCAACGAGACTCACTCCCAACCCCTTCTGGGAACGGTGACTGCTGCCGCCAGCGTCTACGCCCTTACGGGCTTGGTCGTCCTAACCCCTCATGGGGAACGGGGAT	TTGGTATCTGCTTGCCGCAATCGTCTATTATATGGA
CTCCTAATCCCTCGTGGGGAACGAGGAC	ACGAAGTAGGCCTGGCGGGCGACGGGGCGCTGGCAAGG
CTCCTAACCCCTCATGGGGAACGAGGAC	TCTGCCAGCATTACTGGACGAGCGCCAATGGCACCCCG
CTCCTAACCCCTCATGGGGAACGAGGAC	CCCGTTCATCGACGCCCTGATCTCGGGGCTGGAGAAG
CTCCTAACCCCTCATGGGGAACGAGGAC	CAGGTTCGAGACCTGCATGACCTGAAGGCCCCCGGT
CTCCTAACCCCTCATGGGGAACGAGGAC	ATGGTCGTCTCGCATATAGACCCTTCCATAGCTACGGC
CTCCTAACCCCTCATGGGGAACGAGGAC	GCCATCGGACGCTGACGCGGTCGTGCATGTCCCCGCC
CTCCTAACCCCTCATGGGGAACGAGGAC	CTGATGGCGGTCCTGCACGCCATGGGCCAGCCCAACAC
CTCCTAACCCCTCATGGGGAACGAGGAC	TCGATCAGGTCGTCCTGGTTGGGGTCGGGTCTGCCGAG
CTCCTAACCCCTCATGGGGAACGAGGAC	CACGTCCTCGACGGATTTCAGGCCTGCCTCGCCGCT
CTCCTAACCCCTCATGGGGAACGAGGAC	GCGTCCCGTTTTGCTGCGTTTCAGCCGCAGAAGGCCCC
CTCCTAACCCCTCATGGGGAACGAGGAC	TTGGGCTGATGCGTGACATTATCCGACAGACGGCAGTT
CTCCTAACCCCTCATGGGGAACGAGGAC	TCTATGCCGACCGGCATCTCGCCTCACCCACGAACAC
CTCCTAACCCCTCATGGGGAACGGGGAC	AGGGATCACCTGCGAGCCGTCATGCAGACGGATGTA
CTCCTAACCCCTCATGGGGAACGGGGAC	GTTCCGTCGAGCACACGACGTTGCCGTCCTCGGTCTC
CTCCTAACCCTTCATGGGGAACGGGGAC	CCGGTTGCGAGAATGACCATGATGAGCCTCCAGTTCGT
CTCCTAACCCCACATGGGGAACGGGGAC	CATCCATTCCTCGCTACATTCCGGCCCGCAAGCCTCT
CTCCTAACCCCTCATGGGGAACGGGGAC	TCAAGCTGGCGGATCTCTGGGAAGAGAAGCTGGACAT
CTCCTAACCCCTCATGGGAACTGGGACT	TAGCTTCCAGACCGGTGGCAAGATGATGAAGTTCCA
CTCCTAACCCCTCATGGGGAACCAGAAC	TCAAATCCATGAAGTTAACATGGCTGTGGGCTTCTTC
CTCCTAACCCCTCGTGGGGAACGGGGAC	CGTCGCCATAGTAGATCCCGCGCGCCATGTTGTAGG
CCTCCTAGCCCTTATGGGGAACTGGGAC	TGGCGGCCCAATGCTCGCGGGCGCCCTCCGTCTTGGT
CTCCTAACCCCTCATGGGGAGCTGGAAC	GCGCTCTTTCTCCAGATAGACTAGGTCCTGCCCCGG
CTCTTAACCCTTCATGGGGAACTGTGGC	GGGGTCTTCTAGCCCCTCCCAATCGGTGTGAGTGGT
CTCCTAACCCCTCATGGGGAACTGGGAC	CAGATAGCGGCGGAACAGGTCGGTGCCCATGGGGACTGC
CTCCTAACCCCTCACGGGGAACGGGGAC	GCGCAGTTGCTTGTTGACGCCTTCCAGTCCGGTCTT
CTCCTAACCCCTCATGGGGAACGGGGAC	TCCGCTGCTGCGTCGTGCGGCAGATACATGCCGCCGAA
CTCCTAACCCCTCATGGGGAGCGGGGAC	CTAGCCTCTGACGGGCCTCTCAGCGAAGCTCTATGCAT
CTCCTAACCCCTCAGGGGGAACGGGGAC	ATGCCTTGAACTGAGTGGTTTCGCCCATTATGAGGGC
CTCCTAACCCTTCATGGGGAACTGGGAG

>NZ_CP040759|2|1|24788-25265|PILER-CR
CTCCTAACCCCTCATGGGGAGC	TGGAACGCGCTCTTTCTCCAGATAGACTAGGTCCTGCCCCGG
CTCTTAACCCTTCATGGGGAAC	TGTGGCGGGGTCTTCTAGCCCCTCCCAATCGGTGTGAGTGGT
CTCCTAACCCCTCATGGGGAAC	TGGGACCAGATAGCGGCGGAACAGGTCGGTGCCCATGGGGACTGC
CTCCTAACCCCTCACGGGGAAC	GGGGACGCGCAGTTGCTTGTTGACGCCTTCCAGTCCGGTCTT
CTCCTAACCCCTCATGGGGAAC	GGGGACTCCGCTGCTGCGTCGTGCGGCAGATACATGCCGCCGAA
CTCCTAACCCCTCATGGGGAGC	GGGGACCTAGCCTCTGACGGGCCTCTCAGCGAAGCTCTATGCAT
CTCCTAACCCCTCAGGGGGAAC	GGGGACATGCCTTGAACTGAGTGGTTTCGCCCATTATGAGGGC
CTCCTAACCCTTCATGGGGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040759.1\|WP_139615610.1\|32786_33746_+\|WYL-domain-containing-protein	unknown	unknown	gnl\|CDD\|379100
NZ_CP040759.1\|WP_139615613.1\|36164_36506_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040759.1\|WP_139615600.1\|18265_18808_+\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|239737
NZ_CP040759.1\|WP_139615607.1\|28067_29069_-\|type-I-D-CRISPR-associated-protein-Cas7/Csc2	csc2gr7	cd09709_csc2gr7_CAS-I-D	gnl\|CDD\|187840
NZ_CP040759.1\|WP_139615598.1\|15508_17167_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|319753
NZ_CP040759.1\|WP_139615602.1\|20699_20894_-\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	unknown	unknown	gnl\|CDD\|377551
NZ_CP040759.1\|WP_139615639.1\|17719_17962_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	unknown	unknown	gnl\|CDD\|226136
NZ_CP040759.1\|WP_139615604.1\|22458_22848_-\|transposase	unknown	unknown	gnl\|CDD\|366690
NZ_CP040759.1\|WP_139615612.1\|35634_36228_-\|plasmid-pRiA4b-ORF-3-family-protein	unknown	unknown	gnl\|CDD\|377943
NZ_CP040759.1\|WP_139615608.1\|29077_31990_-\|hypothetical-protein	cas10d	mkCas0140_cas10d_CAS-I-D	unknown
NZ_CP040759.1\|WP_139615597.1\|13655_15464_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|226434
NZ_CP040759.1\|WP_139615614.1\|39206_39812_+\|IS630-family-transposase	unknown	unknown	gnl\|CDD\|315923
NZ_CP040759.1\|WP_139615609.1\|32001_32706_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273848
NZ_CP040759.1\|WP_139615605.1\|25355_27389_-\|DEAD/DEAH-box-helicase	cas3	cd09710_cas3_CAS-I-D	gnl\|CDD\|214692
NZ_CP040759.1\|WP_139615601.1\|19088_20645_-\|IS66-family-transposase	unknown	unknown	gnl\|CDD\|376980
NZ_CP040759.1\|WP_135312179.1\|20939_22211_-\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|307151
NZ_CP040759.1\|WP_139615611.1\|34161_35514_+\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|377531
NZ_CP040759.1\|WP_139615603.1\|22273_22462_-\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	unknown	unknown	gnl\|CDD\|377551
NZ_CP040759.1\|WP_139615599.1\|17951_18269_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|226194
NZ_CP040759.1\|WP_139615606.1\|27381_28068_-\|hypothetical-protein	csc1gr5	mkCas0176_csc1gr5_CAS-I-D	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP040759.1\|WP_139615610.1\|32786_33746_+\|WYL-domain-containing-protein	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	0.00501357
NZ_CP040759.1\|WP_139615600.1\|18265_18808_+\|recombinase-family-protein	gnl\|CDD\|239737	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1.	5.16286e-56
NZ_CP040759.1\|WP_139615607.1\|28067_29069_-\|type-I-D-CRISPR-associated-protein-Cas7/Csc2	gnl\|CDD\|187840	cd09709, Csc2_I-D, CRISPR/Cas system-associated protein Csc2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; predicted Cas7 ortholog; also known as Cse1 family.	5.62321e-10
NZ_CP040759.1\|WP_139615598.1\|15508_17167_-\|hypothetical-protein	gnl\|CDD\|319753	cd16434, CheB-CheR_fusion, Chemotaxis response regulator protein-glutamate methylesterase, CheB, fused with CheR domain. This family contains the methylesterase CheB (EC 3.1.1.61; also known as CheB methylesterase, chemotaxis-specific methylesterase, methyl-accepting chemotaxis protein methyl-esterase, or protein methyl-esterase) domain, a phosphorylation-activated response regulator involved in reversible modification of bacterial chemotaxis receptors, fused with a CheR domain as well as other domains. Signaling output of the chemotaxis receptors is modulated by CheB and methyltransferase CheR by controlling the level of receptor methylation. cheB and cheR are typically found in the same operon. However, CheB and CheR are fused in multi-domain proteins in this subgroup. The CheR protein/domain includes an all-alpha N-terminal domain and an S-adenosylmethionine-dependent methyltransferase C-terminal domain. Reversible methylation of transmembrane chemoreceptors plays an important role in ligand-dependent signaling and cellular adaptation in bacterial chemotaxis. Phosphorylated CheB catalyzes deamidation of specific glutamine residues in the cytoplasmic region of the chemoreceptors and demethylation of specific methyl glutamate residues introduced into the chemoreceptors by CheR.	5.39152e-100
NZ_CP040759.1\|WP_139615602.1\|20699_20894_-\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	gnl\|CDD\|377551	pfam05717, TnpB_IS66, IS66 Orf2 like protein. This protein is found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition.	2.15538e-23
NZ_CP040759.1\|WP_139615639.1\|17719_17962_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	gnl\|CDD\|226136	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription].	2.84194e-14
NZ_CP040759.1\|WP_139615604.1\|22458_22848_-\|transposase	gnl\|CDD\|366690	pfam01527, HTH_Tnp_1, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.	2.81965e-13
NZ_CP040759.1\|WP_139615612.1\|35634_36228_-\|plasmid-pRiA4b-ORF-3-family-protein	gnl\|CDD\|377943	pfam07929, PRiA4_ORF3, Plasmid pRiA4b ORF-3-like protein. Members of this family are similar to the protein product of ORF-3 found on plasmid pRiA4 in the bacterium Agrobacterium rhizogenes. This plasmid is responsible for tumorigenesis at wound sites of plants infected by this bacterium, but the ORF-3 product does not seem to be involved in the pathogenetic process. Other proteins found in this family are annotated as being putative TnpR resolvases, but no further evidence was found to back this. Moreover, another member of this family is described as a probable lexA repressor and in fact carries a LexA DNA binding domain (pfam01726), but no references were found to expand on this.	1.73649e-36
NZ_CP040759.1\|WP_139615597.1\|13655_15464_-\|PAS-domain-S-box-protein	gnl\|CDD\|226434	COG3920, COG3920, Signal transduction histidine kinase [Signal transduction mechanisms].	6.80966e-44
NZ_CP040759.1\|WP_139615614.1\|39206_39812_+\|IS630-family-transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	2.33575e-49
NZ_CP040759.1\|WP_139615609.1\|32001_32706_-\|hypothetical-protein	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	2.33573e-09
NZ_CP040759.1\|WP_139615605.1\|25355_27389_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|214692	smart00487, DEXDc, DEAD-like helicases superfamily.	9.63748e-14
NZ_CP040759.1\|WP_139615601.1\|19088_20645_-\|IS66-family-transposase	gnl\|CDD\|376980	pfam03050, DDE_Tnp_IS66, Transposase IS66 family. Transposase proteins are necessary for efficient DNA transposition. This family includes IS66 from Agrobacterium tumefaciens.	2.43491e-115
NZ_CP040759.1\|WP_135312179.1\|20939_22211_-\|IS256-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	3.21519e-57
NZ_CP040759.1\|WP_139615611.1\|34161_35514_+\|IS5-family-transposase	gnl\|CDD\|377531	pfam05598, DUF772, Transposase domain (DUF772). This presumed domain is found at the N-terminus of many proteins found in transposons.	5.89596e-15
NZ_CP040759.1\|WP_139615603.1\|22273_22462_-\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	gnl\|CDD\|377551	pfam05717, TnpB_IS66, IS66 Orf2 like protein. This protein is found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition.	2.70258e-20
NZ_CP040759.1\|WP_139615599.1\|17951_18269_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	5.80494e-23

>NZ_CP040759.1|WP_139615604.1|22458_22848_-|transposase
MESALELLPAGGRGRRNRKWPDEVKARIVAETLMPGVTVNTVARRHGVPANHVSSWRTLARKGRLVLPAPEDPVEFAALLLGPAEDAPRADVGAVARPEIVAGAVVIRLEVGASAERIAMVVRALAATP
>NZ_CP040759.1|WP_139615603.1|22273_22462_-|IS66-family-insertion-sequence-element-accessory-protein-TnpB
MIFPSNRVRIMVATKPVDFRKGHDGLAALVSSVLRKDPFTGTVFVFRSRRADELWPILGDGV
>NZ_CP040759.1|WP_135312179.1|20939_22211_-|IS256-family-transposase
MEDDITITPLHQPGSVVDPLTEIARDGARQMLAAALRAEAASFVAQFAEERLPDGRQRVVHHGTGPERNIQTGIGPIPVQRQKVRDRAADAPPEDKIRFNSRILPKWARRSPSLDALLPVLYLRGVSTGDFQEALSALVGPDAPNLSPGAISRLTGEWQAEHDRWQRRNLSARRYVYVWADGVYLQARMEPQAECMLVIIGATPEGKKELLGFQVGVRESAQSWHELLVDLRARGLSAPPDLAVGDGALGFWKALDEIFPDTRHQRCWTHKVSNVLNKLPKSMHPAVKTDLREIWQAATRAAAETAVNTFVEKYGVKYEKAVACLTKDREALLAFYDFPAAHWDHLRTSNPIESVFATVRHRTVRTKGALSQKTAKLMVFKLVQAAAKKWRRLKGANQLPLVVEGVKFTDGVAEQDANESRAA
>NZ_CP040759.1|WP_139615602.1|20699_20894_-|IS66-family-insertion-sequence-element-accessory-protein-TnpB
MKLLYWDGTGLVMAYKRLEDTTFTWPAIKDGIMALNHAQFEALFAGLDWRKVKALETRPPAAAE
>NZ_CP040759.1|WP_139615601.1|19088_20645_-|IS66-family-transposase
MFAASVLDLSAIPNAQRAAVQALLEEVAALKDITRRQEHLIAELNHALHGKRSEKLTEDERQLAFEDLSIALAEVEASRETQATRTDKGATRPAPKRNIGNLPAALPRIEEVIEPASLICPCGCGIMHKIGEDRSERLDIVPAQLRVIVTVRPKYACRSCTDGVTQAPAPSRLITGGLPTEATLAHVLVSKYADHLPLYRQSQILARAGLDLHRAVLADWVGKAAFHLTPVVDRLAEHLKRSGKLFMDETTAPVLDPGRGTTKTGYLWALARDDRPWGGEDPPGVVYFYAPGRAGENAETFLTGFDGILQIDGYTGYNRLTKPIRKGGAPIRIAHCWAHARRKLKEVFDRDGSEIAAEGLRRIAELYAVEADIRGVSPGQRLSARQARTAPLVAAFGGWLQAQRRKISTKSRLGEKLTYIHNHWEGLQAFLTDGRIEIDSNRVENLIRPITLNRKNALFAGHDEGGVAWGRIASLIETCKINGIEPFAYLKATLTAIATGHPQSRLDDLLPWNFKPSS
>NZ_CP040759.1|WP_139615600.1|18265_18808_+|recombinase-family-protein
MILGYARVSTVDQNLDSQRDALATAGAERIFADTISGTVRARPALDELMKQLRAGDVIVVTKYDRLARSLKDLLELVDQIKAQGAGFRSLAEDIDTTTPAGRLVFHVFASIAQFERERISERTREGLEAARRRGRVGGRPPALSPAQRAEVRRMRDEEHRPLPEIAQLFRVSTKTVRRVI
>NZ_CP040759.1|WP_139615599.1|17951_18269_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MGTEHSCTLRLTFRAEADMEDIWLHGAAEWSPEQADRYVDGITAVLDLLCAMPGIARKRLEFTPPVRIHPSGIHLIIYRTVGDHLDVLRILGGRQDWQRLLEMLE
>NZ_CP040759.1|WP_139615639.1|17719_17962_+|type-II-toxin-antitoxin-system-ParD-family-antitoxin
MATMNVSIPDPMKAWVEERARGGSFSNASDYVRHLIRRDQERSQAIGQLQAAITEGLQSGEPRSFDATAFKARMRSKHGD
>NZ_CP040759.1|WP_139615598.1|15508_17167_-|hypothetical-protein
MRDKAERATPPGLIVGIGASAGGLEAFTAFFAHLPPDSGMAFVLVQHLSPDHKSMLTEILDRASPIPVVEAQDGMRVEPNRVHVIPPDATLTIEDGRLLVVRPAPARADRRPIDSFFISLARDQGDNAVSIVLSGVGSDGSVGLTAVKESGGLTIAQAEFDHHAMPGMPQSAAATGHVDYILQVEEMPASLIDYRDHLALVADRKDGDGTRIDAAEHLATVLAVLRAKTGHDFSKYKIKTVTRRIQRRMQVLQADTVPAYIKHLREDPAEPELLFRDLLIGVTEFFRDPKAFQGLSAAIDALLSRSEGTRSLRVWVPACSTGEEVYSLAVTIRELIDARGTGLDVQIFGTDIDDRAIEFARAGRYQRTVGISPERLERWFFEDNGAYYPSRQIREMCVFSVHNVTKDPPFSKLDLLSCRNLMIYLDGELQDRVLRTFHYALKPDGLLFLGQSEGVSGHAKLFSVQDKAAHIFQRQDGDAAFPTLPMPPQVQAPNRPASDVGGGSGDRVDRAVRLALAKHSPAFLVVDRHSNILRYSGGKLPGIWSPQPVRQV
>NZ_CP040759.1|WP_139615597.1|13655_15464_-|PAS-domain-S-box-protein
MALQSVMKTGEGVIADDVPISVDGTQRLLRVIVEPVQGTGSEGLYAIAFQDVHAAATEASPAADGSLQSTEALAAQQELRTVREQLQATIVDLETANEEMKSSAEEYQSVNEELQSANEELQTSKEEMQSINEELQTVNAEMMAKNDLLSNLNSDLQNLLDSTQIATIFLDGNLRIKNFTPGMADIFSLRESDRGRPLTDIVSLLAYDDLRRDAAKVLRELTVIERELELQDRGASFVMRIRPYRSIEQVIDGVVITFVDVTGRKKAERARGVSERRFAAIVGQAAVGVAETDLTGRFLLSNTAFETMTGRSAEDLRRLRRHELIEPDDAQEIGERFRQAIKDGQPFEAEYRLKRADGTTAWVHDSISVLDEGDAHTNSVISVTLEIGERKRAEEQATLLLGELDHRVKNILAIVSSIVAQALKANPSPEMFAETIGARITAITRAHSLLTNGGGGGTGTLRDLIETELRPYEDRDLRVEGPDIVLTPKAGLSVAMAIHELASNAVKYGSLSDTRGALTVSWEVTDDPDRRLQLSWIETGGPTLSSPPVKRGFGTTVIERSLSYEFNAKVDRAFPASGVVCIIELPLTPGVGELRSPDRRGK
>NZ_CP040759.1|WP_139615605.1|25355_27389_-|DEAD/DEAH-box-helicase
MPEEDRCSFVIPRHAVPVGAEGLSPLQEQMLDAPAPVRIFSAPTGAGKSYAFQVAMRKRGARILFIVPTRRLAQNLAEGLRQDLVDAGMTEDRVLERVGLWTSDEGRRIRAEDPKADVNRHRIREIRMEASLPQEGLMIIATPESVAHYLLRPAFTQGGADVQSIVDLLRLDHVVFDEFHTIEARGMGLSMAIATFLAQDATEAKLTFLSATPIDLVTSFVHFGIPRESILVEAEMVVTGGPEETVGMRAIHGDVTVTFRRDGSMVEALEACRQDILETLSRPSDSKAGQVVLIFDSVRDLQTSKQELAAWFDGIGIGRAERLAISSVDDSTNLDLKGLFMVGRAADPLKFRVLIATASVEMGVTFRAGMILMNPGHDPCSFVQRIGRVARGDMDGQVVVTSFRSEKSELGWFSHIRRQLLTEAPVVPVDRFIDCVLDATRARFDVTERDLDQVDGTFRKMPQSAAWAAALFWCAMEEALVKRGYKGIRNTLRNYRPKKAGAMSAWLGDLGKISLHSAQKWRQAFLREALRLRMISPAVSLVDPDGNRRNVPWHIWASDERLSNMPSRPLDDGRIEVAISTSLEQALSDLSYDRRVRRREEILLPHVGETPLLEADRLVESCLTILRRAEKDHLRAEHRTAREIGERLIRLTRIVPTVERTIDSVNSNDILRSCCTG
>NZ_CP040759.1|WP_139615606.1|27381_28068_-|hypothetical-protein
MTVPDVTPVRATTLSPLHYHSLPVSSGTATIAEFLADRSMSYAIANAMGALSSSVALPRVKDYRRDLEVLPWMASVFTAVNPSLLPQLGKRLNLDTEGGYQKKIMDATGTGNLKTWFYIQEVAPGTIYEGAIFGPDPFRMASEADGREIDYLIIRTGRHLGGIVKLERAPDVKAVRLNAHTAHLFGQDPATDPEMEVDVFALYDMQFTEPKPLEEAARIVGSWRVFDA
>NZ_CP040759.1|WP_139615607.1|28067_29069_-|type-I-D-CRISPR-associated-protein-Cas7/Csc2
MPITDIKPFLGTLDELLFEAQGKDKTYAQPALKNLGSVTLFVLREVISPASFRNADAEITDIEVGGERHVRAVANKFKFGERARGLQILRFLNAGGTLAQNKTVLRKGEKPGDRFDLNTFVFGDSATQDNKFLPVKAAAQYSDAVSLQDYGSSVDRTFHNRASEDGTLFNAETKQPSVNIFERHFVKPSTLLLQTISLNGRTAPAEALEHLLLAISLAGAYGGQTSIYGVNVKNHVVALCGGRFERELASPYAMITALHAAGADISTADAAATAIRGLVEDAWPVVIPGSEIADRQKAMIATLEGDDAEMRTRYLASAGKISSYFNAWFEGIS
>NZ_CP040759.1|WP_139615608.1|29077_31990_-|hypothetical-protein
MIPVSTRLFRDFLGSVIAEHVFSEAEREAHNGPLAVTQQKDIAAGKRIEARTPRLMMMSGKGGYVEGESFKDRLKFRNVTLLDHLTSVTRGAAVFAEIDLRAAGVHEEVLPVRIVRIMATAFLHDADKILDLPRKESEALTAAHIAELMSHYGIAAFLTRYGAQMSAETLLARINAVEISRSDMIAPGMKLLPIEEAKDSLYVRLADRLDGIFLDTTRPIGDVVGELERFEGLRSKDLKQGWTAFSLRSPHTPFLLDELQRAFSVAVYDRKGCPPLVEVHHDGELLLVCQQDVAEEAMEVALNEASKRLRLDLRADINPKGSRDILDSGAEVSDLEEAFRYDSREASKALYVHIRLLNEDAWRQAMAAFFGDLGFAPSLSGIDTFTSKGSKHFQPWFILDENDPRLPILKDAACIVMALGCSEPTSRVLAARVPDAATREQELVTLASELGFDVPEWVVETKHQGSRQSLLAAWIAALGARDPDLRHHVFGFDGLLSLWLCGDGADRAGLFEKIGDPSSRFIEAARKWLDATLRRRFLDAEIGAPFGYCHFTNAPVSAKAVINKKSGIKGLNVSAFSGREGRPESHESAKSLTLVSDFAFAEHRLRTMQAEKTGNFAKDLPANVSSPTAMGLFATLGLSSDLRDAFLDLNHFDLMRLDLKSGRQVYVDRDQYGARKVFARHVGVPARTADLITLIRMMMESALRLGRPVHVFQGMPSPQAGFVHFDILPAALRKAFGGNSFRIEQLPQALFLLGIAEQLCASEMQNVGIEVALRILDPETRFGATCEAILILDRLPDDRAKTLMGLRMALMTIAKKEYAMHAEKDSALINFARAMARVQAAPKRDASNNERSLGLRIALEAVEGCVRIGETSEEAMIAAIAGKLEAEFDRSARLEHRGSFGDRPFPRKSAQDAATIFITQVWPRAFRSRPPVSKDRRIAFAIYQVSFTEESYRPRSGAETPSLETTENGK
>NZ_CP040759.1|WP_139615609.1|32001_32706_-|hypothetical-protein
MRIFIDLHKKPQRVRYCDSMNAAIVAALDKAGIASKDMVGPEAQPWTFGMSGVAREDGFSTITGLTISTPSEIIARGLMQIRPEWIQVHSSNGDVIDCSGARRHLGRLPADGVSELAVFFASPILIKPLGKDPETEWIEEFGSVDFDAAFRRGLERRAGRDMDISFSADPLTLAVGVTRRLVHLRKATNGRKVIVPAFSLPLTMRGHPEDVRFAYMAGLGAKTRAGFGCPILPQ
>NZ_CP040759.1|WP_139615610.1|32786_33746_+|WYL-domain-containing-protein
MKSKLLDARVLEYLAYWERQLTAGRLAAMMCVERQHSQSHMITPYETHPLTLGKLERHKRVKQFPALAGDGSLPAYTGTAPADALQILTALDFLTEGHRDTYREGWSSQVGPAVPLERVPVLNQLHASHEPFRTLFSACARRVAVTLRYRSRTSEAVHMTVSPHALIDGYQRPHFRCYVVEGMSENAMLTGRYLPGMKGKYWSDIVPYRVIEVEGEHPQSYVDGCGDSNWHQRSPLLFKLSDLLTPPLRDAVVQDYEGAEGFYYPYLLIPSVRVALTPYVRRSLRWRVFDNSHPQEMFVEVEGEERDSIIKTVFGMGGE
>NZ_CP040759.1|WP_139615611.1|34161_35514_+|IS5-family-transposase
MKPRLRTEEQDDLLRPRLTDMIDLRHELAKLAALIDWEFFETEWAGFFPSPTGRPATSPRLVAGLLYLQHAYRLSDEAVVDRWVENPYYQHFTGEVFFQHRLPIDPSSLTRWRKRIGEEGAEWLLTKTIEAGRASRTVDDRSLSRISVDTTVMEKNIAHPTDARLYETARGKLVALANEGGITLRQNYNRLAPRLAVRIGRYAHARQFKRMGKALKQLKGYTGRVLRDIRRQLDGIAEGPFRERVLDTLVLVGRLLHQSPKSHGKIYALHEPEVDCISKGKARKRYEFGTKVSLATTIDEGFVVGMRALPGNPYDGHTLPEALEQVAILTGQIPDLAVVDRGYRGHGVLETKVLISGTRRGLTQKLKALLRRRSAIEPEIGHMKTDGRLSRCPLKGTSGDAIFAVLCGCGHNIRKILAHLRALLAFILAAILQVIRTENGYLAHGQRCSA
>NZ_CP040759.1|WP_139615612.1|35634_36228_-|plasmid-pRiA4b-ORF-3-family-protein
MAEKHNHRAGHCERGSRHRHVAGFSWSGPASAQHDLPRSPAPDPVSRHGLDQLASLHVRGWWSELGVPDPDFGGDDLPANKTSLAQLIQDTSVRTGRYIYDFGDNWEHKLQIGKITPLAPGEIYPGLRHISGRCPPEDVGGPPGYEEFLEAVKDPNHPEHEELAEWADGTFDPHTLDAEELRLNVLKLAKKWQPRKT
>NZ_CP040759.1|WP_139615613.1|36164_36506_-|hypothetical-protein
MRLCVSTVKPAPWFGEACSEQYHESGVKDLDPTRLDDPVYVFQAMQRGQIAKLTNAHVQTLYKETIDEAVIMSLKKQSRLLQETIDLSIKRMTWLRNITIVLAIVNVAVVIGM
>NZ_CP040759.1|WP_139615614.1|39206_39812_+|IS630-family-transposase
MQALEQKRQDVAGLRHIWVARRQPFMANHLERLVFLDETGLKTNMTKTTGWSPCGQRFVDHAPFGHWRSQTFIAALRHDRLDAPWVIDGAMNAEMFELYIKTQLVPTLRAGDVVILDNLSSHKSPAAAAALHNIGAWFLFLPPYSPDLNPIEMAFAKLKALVRKAAARTYDQLWAAVGQVCNLFSDEECYNYFKAAGYEVD

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP040759_1	1.1\|18973\|52\|NZ_CP040759\|CRISPRCasFinder	18973-19024	52	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	18973-19024	0	1.0
NZ_CP040759_2	2.1\|22994\|41\|NZ_CP040759\|CRT	22994-23034	41	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	22994-23034	0	1.0
NZ_CP040759_2	2.2\|23058\|41\|NZ_CP040759\|CRT	23058-23098	41	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	23058-23098	0	1.0
NZ_CP040759_2	2.3\|23122\|42\|NZ_CP040759\|CRT	23122-23163	42	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	23122-23163	0	1.0
NZ_CP040759_2	2.4\|23187\|41\|NZ_CP040759\|CRT	23187-23227	41	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	23187-23227	0	1.0
NZ_CP040759_2	2.5\|23251\|41\|NZ_CP040759\|CRT	23251-23291	41	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	23251-23291	0	1.0
NZ_CP040759_2	2.6\|23315\|41\|NZ_CP040759\|CRT	23315-23355	41	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	23315-23355	0	1.0
NZ_CP040759_2	2.7\|23379\|41\|NZ_CP040759\|CRT	23379-23419	41	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	23379-23419	0	1.0
NZ_CP040759_2	2.8\|23443\|43\|NZ_CP040759\|CRT	23443-23485	43	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	23443-23485	0	1.0
NZ_CP040759_2	2.9\|23509\|43\|NZ_CP040759\|CRT	23509-23551	43	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	23509-23551	0	1.0
NZ_CP040759_2	2.10\|23575\|42\|NZ_CP040759\|CRT	23575-23616	42	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	23575-23616	0	1.0
NZ_CP040759_2	2.11\|23640\|41\|NZ_CP040759\|CRT	23640-23680	41	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	23640-23680	0	1.0
NZ_CP040759_2	2.12\|23704\|43\|NZ_CP040759\|CRT	23704-23746	43	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	23704-23746	0	1.0
NZ_CP040759_2	2.13\|23770\|42\|NZ_CP040759\|CRT	23770-23811	42	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	23770-23811	0	1.0
NZ_CP040759_2	2.14\|23835\|43\|NZ_CP040759\|CRT	23835-23877	43	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	23835-23877	0	1.0
NZ_CP040759_2	2.15\|23901\|43\|NZ_CP040759\|CRT	23901-23943	43	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	23901-23943	0	1.0
NZ_CP040759_2	2.16\|23967\|41\|NZ_CP040759\|CRT	23967-24007	41	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	23967-24007	0	1.0
NZ_CP040759_2	2.17\|24031\|43\|NZ_CP040759\|CRT	24031-24073	43	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	24031-24073	0	1.0
NZ_CP040759_2	2.18\|24097\|43\|NZ_CP040759\|CRT	24097-24139	43	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	24097-24139	0	1.0
NZ_CP040759_2	2.19\|24163\|42\|NZ_CP040759\|CRT	24163-24204	42	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	24163-24204	0	1.0
NZ_CP040759_2	2.20\|24228\|41\|NZ_CP040759\|CRT	24228-24268	41	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	24228-24268	0	1.0
NZ_CP040759_2	2.21\|24292\|42\|NZ_CP040759\|CRT	24292-24333	42	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	24292-24333	0	1.0
NZ_CP040759_2	2.22\|24357\|43\|NZ_CP040759\|CRT	24357-24399	43	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	24357-24399	0	1.0
NZ_CP040759_2	2.23\|24423\|42\|NZ_CP040759\|CRT	24423-24464	42	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	24423-24464	0	1.0
NZ_CP040759_2	2.24\|24488\|42\|NZ_CP040759\|CRT	24488-24529	42	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	24488-24529	0	1.0
NZ_CP040759_2	2.25\|24553\|41\|NZ_CP040759\|CRT	24553-24593	41	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	24553-24593	0	1.0
NZ_CP040759_2	2.26\|24617\|42\|NZ_CP040759\|CRT	24617-24658	42	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	24617-24658	0	1.0
NZ_CP040759_2	2.27\|24682\|41\|NZ_CP040759\|CRT	24682-24722	41	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	24682-24722	0	1.0
NZ_CP040759_2	2.28\|24746\|42\|NZ_CP040759\|CRT	24746-24787	42	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	24746-24787	0	1.0
NZ_CP040759_2	2.29\|24811\|41\|NZ_CP040759\|CRT	24811-24851	41	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	24811-24851	0	1.0
NZ_CP040759_2	2.30\|24875\|41\|NZ_CP040759\|CRT	24875-24915	41	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	24875-24915	0	1.0
NZ_CP040759_2	2.31\|24939\|44\|NZ_CP040759\|CRT	24939-24982	44	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	24939-24982	0	1.0
NZ_CP040759_2	2.32\|25006\|41\|NZ_CP040759\|CRT	25006-25046	41	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	25006-25046	0	1.0
NZ_CP040759_2	2.33\|25070\|43\|NZ_CP040759\|CRT	25070-25112	43	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	25070-25112	0	1.0
NZ_CP040759_2	2.34\|25136\|43\|NZ_CP040759\|CRT	25136-25178	43	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	25136-25178	0	1.0
NZ_CP040759_2	2.35\|25202\|42\|NZ_CP040759\|CRT	25202-25243	42	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	25202-25243	0	1.0
NZ_CP040759_2	2.36\|23063\|36\|NZ_CP040759\|CRISPRCasFinder	23063-23098	36	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	23063-23098	0	1.0
NZ_CP040759_2	2.37\|23127\|37\|NZ_CP040759\|CRISPRCasFinder	23127-23163	37	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	23127-23163	0	1.0
NZ_CP040759_2	2.38\|23192\|36\|NZ_CP040759\|CRISPRCasFinder	23192-23227	36	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	23192-23227	0	1.0
NZ_CP040759_2	2.39\|23384\|36\|NZ_CP040759\|CRISPRCasFinder	23384-23419	36	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	23384-23419	0	1.0
NZ_CP040759_2	2.40\|23448\|38\|NZ_CP040759\|CRISPRCasFinder	23448-23485	38	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	23448-23485	0	1.0
NZ_CP040759_2	2.41\|23514\|38\|NZ_CP040759\|CRISPRCasFinder	23514-23551	38	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	23514-23551	0	1.0
NZ_CP040759_2	2.42\|23580\|37\|NZ_CP040759\|CRISPRCasFinder	23580-23616	37	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	23580-23616	0	1.0
NZ_CP040759_2	2.43\|23645\|36\|NZ_CP040759\|CRISPRCasFinder	23645-23680	36	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	23645-23680	0	1.0
NZ_CP040759_2	2.44\|23709\|38\|NZ_CP040759\|CRISPRCasFinder	23709-23746	38	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	23709-23746	0	1.0
NZ_CP040759_2	2.45\|23775\|37\|NZ_CP040759\|CRISPRCasFinder	23775-23811	37	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	23775-23811	0	1.0
NZ_CP040759_2	2.46\|23840\|38\|NZ_CP040759\|CRISPRCasFinder	23840-23877	38	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	23840-23877	0	1.0
NZ_CP040759_2	2.47\|23906\|38\|NZ_CP040759\|CRISPRCasFinder	23906-23943	38	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	23906-23943	0	1.0
NZ_CP040759_2	2.48\|23972\|36\|NZ_CP040759\|CRISPRCasFinder	23972-24007	36	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	23972-24007	0	1.0
NZ_CP040759_2	2.49\|24036\|38\|NZ_CP040759\|CRISPRCasFinder	24036-24073	38	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	24036-24073	0	1.0
NZ_CP040759_2	2.50\|24102\|38\|NZ_CP040759\|CRISPRCasFinder	24102-24139	38	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	24102-24139	0	1.0
NZ_CP040759_2	2.51\|24168\|37\|NZ_CP040759\|CRISPRCasFinder	24168-24204	37	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	24168-24204	0	1.0
NZ_CP040759_2	2.52\|24233\|36\|NZ_CP040759\|CRISPRCasFinder	24233-24268	36	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	24233-24268	0	1.0
NZ_CP040759_2	2.53\|24297\|37\|NZ_CP040759\|CRISPRCasFinder	24297-24333	37	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	24297-24333	0	1.0
NZ_CP040759_2	2.54\|24362\|38\|NZ_CP040759\|CRISPRCasFinder	24362-24399	38	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	24362-24399	0	1.0
NZ_CP040759_2	2.55\|24428\|37\|NZ_CP040759\|CRISPRCasFinder	24428-24464	37	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	24428-24464	0	1.0
NZ_CP040759_2	2.56\|24493\|37\|NZ_CP040759\|CRISPRCasFinder	24493-24529	37	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	24493-24529	0	1.0
NZ_CP040759_2	2.57\|24558\|36\|NZ_CP040759\|CRISPRCasFinder	24558-24593	36	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	24558-24593	0	1.0
NZ_CP040759_2	2.58\|24622\|37\|NZ_CP040759\|CRISPRCasFinder	24622-24658	37	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	24622-24658	0	1.0
NZ_CP040759_2	2.59\|24687\|36\|NZ_CP040759\|CRISPRCasFinder	24687-24722	36	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	24687-24722	0	1.0
NZ_CP040759_2	2.60\|24751\|37\|NZ_CP040759\|CRISPRCasFinder	24751-24787	37	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	24751-24787	0	1.0
NZ_CP040759_2	2.61\|24816\|36\|NZ_CP040759\|CRISPRCasFinder	24816-24851	36	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	24816-24851	0	1.0
NZ_CP040759_2	2.62\|24880\|36\|NZ_CP040759\|CRISPRCasFinder	24880-24915	36	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	24880-24915	0	1.0
NZ_CP040759_2	2.63\|24944\|39\|NZ_CP040759\|CRISPRCasFinder	24944-24982	39	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	24944-24982	0	1.0
NZ_CP040759_2	2.64\|25011\|36\|NZ_CP040759\|CRISPRCasFinder	25011-25046	36	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	25011-25046	0	1.0
NZ_CP040759_2	2.65\|25075\|38\|NZ_CP040759\|CRISPRCasFinder	25075-25112	38	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	25075-25112	0	1.0
NZ_CP040759_2	2.66\|25141\|38\|NZ_CP040759\|CRISPRCasFinder	25141-25178	38	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	25141-25178	0	1.0
NZ_CP040759_2	2.67\|25207\|37\|NZ_CP040759\|CRISPRCasFinder	25207-25243	37	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	25207-25243	0	1.0
NZ_CP040759_2	2.68\|24810\|42\|NZ_CP040759\|PILER-CR	24810-24851	42	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	24810-24851	0	1.0
NZ_CP040759_2	2.69\|24874\|42\|NZ_CP040759\|PILER-CR	24874-24915	42	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	24874-24915	0	1.0
NZ_CP040759_2	2.70\|24938\|45\|NZ_CP040759\|PILER-CR	24938-24982	45	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	24938-24982	0	1.0
NZ_CP040759_2	2.71\|25005\|42\|NZ_CP040759\|PILER-CR	25005-25046	42	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	25005-25046	0	1.0
NZ_CP040759_2	2.72\|25069\|44\|NZ_CP040759\|PILER-CR	25069-25112	44	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	25069-25112	0	1.0
NZ_CP040759_2	2.73\|25135\|44\|NZ_CP040759\|PILER-CR	25135-25178	44	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	25135-25178	0	1.0
NZ_CP040759_2	2.74\|25201\|43\|NZ_CP040759\|PILER-CR	25201-25243	43	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	25201-25243	0	1.0
NZ_CP040759_2	2.45\|23775\|37\|NZ_CP040759\|CRISPRCasFinder	23775-23811	37	NZ_CP013856	Pseudonocardia sp. HH130630-07 plasmid pLS2-2, complete sequence	58136-58172	8	0.784
NZ_CP040759_2	2.42\|23580\|37\|NZ_CP040759\|CRISPRCasFinder	23580-23616	37	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	2487541-2487577	9	0.757
NZ_CP040759_2	2.64\|25011\|36\|NZ_CP040759\|CRISPRCasFinder	25011-25046	36	MT613935	Pseudomonas phage Persinger, complete genome	8103-8138	10	0.722

1. spacer 1.1|18973|52|NZ_CP040759|CRISPRCasFinder matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

aacgggaacggggacggcgcggcacgcccatcgccaagggcagcgattacac	CRISPR spacer
aacgggaacggggacggcgcggcacgcccatcgccaagggcagcgattacac	Protospacer
****************************************************

2. spacer 2.1|22994|41|NZ_CP040759|CRT matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

gggacccatgccgccagcgcgacagatgcggccatgtaggc	CRISPR spacer
gggacccatgccgccagcgcgacagatgcggccatgtaggc	Protospacer
*****************************************

3. spacer 2.2|23058|41|NZ_CP040759|CRT matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

gggaccggatcaactacgccaccaccgacgccgccttcgtc	CRISPR spacer
gggaccggatcaactacgccaccaccgacgccgccttcgtc	Protospacer
*****************************************

4. spacer 2.3|23122|42|NZ_CP040759|CRT matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

gtaatttggcttcttatcgaagcacccgtagttgtgggcgta	CRISPR spacer
gtaatttggcttcttatcgaagcacccgtagttgtgggcgta	Protospacer
******************************************

5. spacer 2.4|23187|41|NZ_CP040759|CRT matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

gaacccggatcatcgaggtagccgtcatagaccgccttgat	CRISPR spacer
gaacccggatcatcgaggtagccgtcatagaccgccttgat	Protospacer
*****************************************

6. spacer 2.5|23251|41|NZ_CP040759|CRT matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

gggaccgactcgaacgcggccatgcaggccaacgagactca	CRISPR spacer
gggaccgactcgaacgcggccatgcaggccaacgagactca	Protospacer
*****************************************

7. spacer 2.6|23315|41|NZ_CP040759|CRT matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

tgactgctgccgccagcgtctacgcccttacgggcttggtc	CRISPR spacer
tgactgctgccgccagcgtctacgcccttacgggcttggtc	Protospacer
*****************************************

8. spacer 2.7|23379|41|NZ_CP040759|CRT matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

gggatttggtatctgcttgccgcaatcgtctattatatgga	CRISPR spacer
gggatttggtatctgcttgccgcaatcgtctattatatgga	Protospacer
*****************************************

9. spacer 2.8|23443|43|NZ_CP040759|CRT matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

aggacacgaagtaggcctggcgggcgacggggcgctggcaagg	CRISPR spacer
aggacacgaagtaggcctggcgggcgacggggcgctggcaagg	Protospacer
*******************************************

10. spacer 2.9|23509|43|NZ_CP040759|CRT matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

aggactctgccagcattactggacgagcgccaatggcaccccg	CRISPR spacer
aggactctgccagcattactggacgagcgccaatggcaccccg	Protospacer
*******************************************

11. spacer 2.10|23575|42|NZ_CP040759|CRT matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

aggaccccgttcatcgacgccctgatctcggggctggagaag	CRISPR spacer
aggaccccgttcatcgacgccctgatctcggggctggagaag	Protospacer
******************************************

12. spacer 2.11|23640|41|NZ_CP040759|CRT matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

aggaccaggttcgagacctgcatgacctgaaggcccccggt	CRISPR spacer
aggaccaggttcgagacctgcatgacctgaaggcccccggt	Protospacer
*****************************************

13. spacer 2.12|23704|43|NZ_CP040759|CRT matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

aggacatggtcgtctcgcatatagacccttccatagctacggc	CRISPR spacer
aggacatggtcgtctcgcatatagacccttccatagctacggc	Protospacer
*******************************************

14. spacer 2.13|23770|42|NZ_CP040759|CRT matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

aggacgccatcggacgctgacgcggtcgtgcatgtccccgcc	CRISPR spacer
aggacgccatcggacgctgacgcggtcgtgcatgtccccgcc	Protospacer
******************************************

15. spacer 2.14|23835|43|NZ_CP040759|CRT matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

aggacctgatggcggtcctgcacgccatgggccagcccaacac	CRISPR spacer
aggacctgatggcggtcctgcacgccatgggccagcccaacac	Protospacer
*******************************************

16. spacer 2.15|23901|43|NZ_CP040759|CRT matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

aggactcgatcaggtcgtcctggttggggtcgggtctgccgag	CRISPR spacer
aggactcgatcaggtcgtcctggttggggtcgggtctgccgag	Protospacer
*******************************************

17. spacer 2.16|23967|41|NZ_CP040759|CRT matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

aggaccacgtcctcgacggatttcaggcctgcctcgccgct	CRISPR spacer
aggaccacgtcctcgacggatttcaggcctgcctcgccgct	Protospacer
*****************************************

18. spacer 2.17|24031|43|NZ_CP040759|CRT matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

aggacgcgtcccgttttgctgcgtttcagccgcagaaggcccc	CRISPR spacer
aggacgcgtcccgttttgctgcgtttcagccgcagaaggcccc	Protospacer
*******************************************

19. spacer 2.18|24097|43|NZ_CP040759|CRT matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

aggacttgggctgatgcgtgacattatccgacagacggcagtt	CRISPR spacer
aggacttgggctgatgcgtgacattatccgacagacggcagtt	Protospacer
*******************************************

20. spacer 2.19|24163|42|NZ_CP040759|CRT matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

aggactctatgccgaccggcatctcgcctcacccacgaacac	CRISPR spacer
aggactctatgccgaccggcatctcgcctcacccacgaacac	Protospacer
******************************************

21. spacer 2.20|24228|41|NZ_CP040759|CRT matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

gggacagggatcacctgcgagccgtcatgcagacggatgta	CRISPR spacer
gggacagggatcacctgcgagccgtcatgcagacggatgta	Protospacer
*****************************************

22. spacer 2.21|24292|42|NZ_CP040759|CRT matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

gggacgttccgtcgagcacacgacgttgccgtcctcggtctc	CRISPR spacer
gggacgttccgtcgagcacacgacgttgccgtcctcggtctc	Protospacer
******************************************

23. spacer 2.22|24357|43|NZ_CP040759|CRT matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

gggacccggttgcgagaatgaccatgatgagcctccagttcgt	CRISPR spacer
gggacccggttgcgagaatgaccatgatgagcctccagttcgt	Protospacer
*******************************************

24. spacer 2.23|24423|42|NZ_CP040759|CRT matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

gggaccatccattcctcgctacattccggcccgcaagcctct	CRISPR spacer
gggaccatccattcctcgctacattccggcccgcaagcctct	Protospacer
******************************************

25. spacer 2.24|24488|42|NZ_CP040759|CRT matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

gggactcaagctggcggatctctgggaagagaagctggacat	CRISPR spacer
gggactcaagctggcggatctctgggaagagaagctggacat	Protospacer
******************************************

26. spacer 2.25|24553|41|NZ_CP040759|CRT matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

ggacttagcttccagaccggtggcaagatgatgaagttcca	CRISPR spacer
ggacttagcttccagaccggtggcaagatgatgaagttcca	Protospacer
*****************************************

27. spacer 2.26|24617|42|NZ_CP040759|CRT matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

agaactcaaatccatgaagttaacatggctgtgggcttcttc	CRISPR spacer
agaactcaaatccatgaagttaacatggctgtgggcttcttc	Protospacer
******************************************

28. spacer 2.27|24682|41|NZ_CP040759|CRT matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

gggaccgtcgccatagtagatcccgcgcgccatgttgtagg	CRISPR spacer
gggaccgtcgccatagtagatcccgcgcgccatgttgtagg	Protospacer
*****************************************

29. spacer 2.28|24746|42|NZ_CP040759|CRT matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

gggactggcggcccaatgctcgcgggcgccctccgtcttggt	CRISPR spacer
gggactggcggcccaatgctcgcgggcgccctccgtcttggt	Protospacer
******************************************

30. spacer 2.29|24811|41|NZ_CP040759|CRT matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

ggaacgcgctctttctccagatagactaggtcctgccccgg	CRISPR spacer
ggaacgcgctctttctccagatagactaggtcctgccccgg	Protospacer
*****************************************

31. spacer 2.30|24875|41|NZ_CP040759|CRT matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

gtggcggggtcttctagcccctcccaatcggtgtgagtggt	CRISPR spacer
gtggcggggtcttctagcccctcccaatcggtgtgagtggt	Protospacer
*****************************************

32. spacer 2.31|24939|44|NZ_CP040759|CRT matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

gggaccagatagcggcggaacaggtcggtgcccatggggactgc	CRISPR spacer
gggaccagatagcggcggaacaggtcggtgcccatggggactgc	Protospacer
********************************************

33. spacer 2.32|25006|41|NZ_CP040759|CRT matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

gggacgcgcagttgcttgttgacgccttccagtccggtctt	CRISPR spacer
gggacgcgcagttgcttgttgacgccttccagtccggtctt	Protospacer
*****************************************

34. spacer 2.33|25070|43|NZ_CP040759|CRT matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

gggactccgctgctgcgtcgtgcggcagatacatgccgccgaa	CRISPR spacer
gggactccgctgctgcgtcgtgcggcagatacatgccgccgaa	Protospacer
*******************************************

35. spacer 2.34|25136|43|NZ_CP040759|CRT matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

gggacctagcctctgacgggcctctcagcgaagctctatgcat	CRISPR spacer
gggacctagcctctgacgggcctctcagcgaagctctatgcat	Protospacer
*******************************************

36. spacer 2.35|25202|42|NZ_CP040759|CRT matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

gggacatgccttgaactgagtggtttcgcccattatgagggc	CRISPR spacer
gggacatgccttgaactgagtggtttcgcccattatgagggc	Protospacer
******************************************

37. spacer 2.36|23063|36|NZ_CP040759|CRISPRCasFinder matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

cggatcaactacgccaccaccgacgccgccttcgtc	CRISPR spacer
cggatcaactacgccaccaccgacgccgccttcgtc	Protospacer
************************************

38. spacer 2.37|23127|37|NZ_CP040759|CRISPRCasFinder matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

ttggcttcttatcgaagcacccgtagttgtgggcgta	CRISPR spacer
ttggcttcttatcgaagcacccgtagttgtgggcgta	Protospacer
*************************************

39. spacer 2.38|23192|36|NZ_CP040759|CRISPRCasFinder matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

cggatcatcgaggtagccgtcatagaccgccttgat	CRISPR spacer
cggatcatcgaggtagccgtcatagaccgccttgat	Protospacer
************************************

40. spacer 2.39|23384|36|NZ_CP040759|CRISPRCasFinder matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

ttggtatctgcttgccgcaatcgtctattatatgga	CRISPR spacer
ttggtatctgcttgccgcaatcgtctattatatgga	Protospacer
************************************

41. spacer 2.40|23448|38|NZ_CP040759|CRISPRCasFinder matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

acgaagtaggcctggcgggcgacggggcgctggcaagg	CRISPR spacer
acgaagtaggcctggcgggcgacggggcgctggcaagg	Protospacer
**************************************

42. spacer 2.41|23514|38|NZ_CP040759|CRISPRCasFinder matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

tctgccagcattactggacgagcgccaatggcaccccg	CRISPR spacer
tctgccagcattactggacgagcgccaatggcaccccg	Protospacer
**************************************

43. spacer 2.42|23580|37|NZ_CP040759|CRISPRCasFinder matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

cccgttcatcgacgccctgatctcggggctggagaag	CRISPR spacer
cccgttcatcgacgccctgatctcggggctggagaag	Protospacer
*************************************

44. spacer 2.43|23645|36|NZ_CP040759|CRISPRCasFinder matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

caggttcgagacctgcatgacctgaaggcccccggt	CRISPR spacer
caggttcgagacctgcatgacctgaaggcccccggt	Protospacer
************************************

45. spacer 2.44|23709|38|NZ_CP040759|CRISPRCasFinder matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

atggtcgtctcgcatatagacccttccatagctacggc	CRISPR spacer
atggtcgtctcgcatatagacccttccatagctacggc	Protospacer
**************************************

46. spacer 2.45|23775|37|NZ_CP040759|CRISPRCasFinder matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

gccatcggacgctgacgcggtcgtgcatgtccccgcc	CRISPR spacer
gccatcggacgctgacgcggtcgtgcatgtccccgcc	Protospacer
*************************************

47. spacer 2.46|23840|38|NZ_CP040759|CRISPRCasFinder matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

ctgatggcggtcctgcacgccatgggccagcccaacac	CRISPR spacer
ctgatggcggtcctgcacgccatgggccagcccaacac	Protospacer
**************************************

48. spacer 2.47|23906|38|NZ_CP040759|CRISPRCasFinder matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

tcgatcaggtcgtcctggttggggtcgggtctgccgag	CRISPR spacer
tcgatcaggtcgtcctggttggggtcgggtctgccgag	Protospacer
**************************************

49. spacer 2.48|23972|36|NZ_CP040759|CRISPRCasFinder matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

cacgtcctcgacggatttcaggcctgcctcgccgct	CRISPR spacer
cacgtcctcgacggatttcaggcctgcctcgccgct	Protospacer
************************************

50. spacer 2.49|24036|38|NZ_CP040759|CRISPRCasFinder matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

gcgtcccgttttgctgcgtttcagccgcagaaggcccc	CRISPR spacer
gcgtcccgttttgctgcgtttcagccgcagaaggcccc	Protospacer
**************************************

51. spacer 2.50|24102|38|NZ_CP040759|CRISPRCasFinder matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

ttgggctgatgcgtgacattatccgacagacggcagtt	CRISPR spacer
ttgggctgatgcgtgacattatccgacagacggcagtt	Protospacer
**************************************

52. spacer 2.51|24168|37|NZ_CP040759|CRISPRCasFinder matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

tctatgccgaccggcatctcgcctcacccacgaacac	CRISPR spacer
tctatgccgaccggcatctcgcctcacccacgaacac	Protospacer
*************************************

53. spacer 2.52|24233|36|NZ_CP040759|CRISPRCasFinder matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

agggatcacctgcgagccgtcatgcagacggatgta	CRISPR spacer
agggatcacctgcgagccgtcatgcagacggatgta	Protospacer
************************************

54. spacer 2.53|24297|37|NZ_CP040759|CRISPRCasFinder matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

gttccgtcgagcacacgacgttgccgtcctcggtctc	CRISPR spacer
gttccgtcgagcacacgacgttgccgtcctcggtctc	Protospacer
*************************************

55. spacer 2.54|24362|38|NZ_CP040759|CRISPRCasFinder matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

ccggttgcgagaatgaccatgatgagcctccagttcgt	CRISPR spacer
ccggttgcgagaatgaccatgatgagcctccagttcgt	Protospacer
**************************************

56. spacer 2.55|24428|37|NZ_CP040759|CRISPRCasFinder matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

catccattcctcgctacattccggcccgcaagcctct	CRISPR spacer
catccattcctcgctacattccggcccgcaagcctct	Protospacer
*************************************

57. spacer 2.56|24493|37|NZ_CP040759|CRISPRCasFinder matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

tcaagctggcggatctctgggaagagaagctggacat	CRISPR spacer
tcaagctggcggatctctgggaagagaagctggacat	Protospacer
*************************************

58. spacer 2.57|24558|36|NZ_CP040759|CRISPRCasFinder matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

tagcttccagaccggtggcaagatgatgaagttcca	CRISPR spacer
tagcttccagaccggtggcaagatgatgaagttcca	Protospacer
************************************

59. spacer 2.58|24622|37|NZ_CP040759|CRISPRCasFinder matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

tcaaatccatgaagttaacatggctgtgggcttcttc	CRISPR spacer
tcaaatccatgaagttaacatggctgtgggcttcttc	Protospacer
*************************************

60. spacer 2.59|24687|36|NZ_CP040759|CRISPRCasFinder matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

cgtcgccatagtagatcccgcgcgccatgttgtagg	CRISPR spacer
cgtcgccatagtagatcccgcgcgccatgttgtagg	Protospacer
************************************

61. spacer 2.60|24751|37|NZ_CP040759|CRISPRCasFinder matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

tggcggcccaatgctcgcgggcgccctccgtcttggt	CRISPR spacer
tggcggcccaatgctcgcgggcgccctccgtcttggt	Protospacer
*************************************

62. spacer 2.61|24816|36|NZ_CP040759|CRISPRCasFinder matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

gcgctctttctccagatagactaggtcctgccccgg	CRISPR spacer
gcgctctttctccagatagactaggtcctgccccgg	Protospacer
************************************

63. spacer 2.62|24880|36|NZ_CP040759|CRISPRCasFinder matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

ggggtcttctagcccctcccaatcggtgtgagtggt	CRISPR spacer
ggggtcttctagcccctcccaatcggtgtgagtggt	Protospacer
************************************

64. spacer 2.63|24944|39|NZ_CP040759|CRISPRCasFinder matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

cagatagcggcggaacaggtcggtgcccatggggactgc	CRISPR spacer
cagatagcggcggaacaggtcggtgcccatggggactgc	Protospacer
***************************************

65. spacer 2.64|25011|36|NZ_CP040759|CRISPRCasFinder matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

gcgcagttgcttgttgacgccttccagtccggtctt	CRISPR spacer
gcgcagttgcttgttgacgccttccagtccggtctt	Protospacer
************************************

66. spacer 2.65|25075|38|NZ_CP040759|CRISPRCasFinder matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

tccgctgctgcgtcgtgcggcagatacatgccgccgaa	CRISPR spacer
tccgctgctgcgtcgtgcggcagatacatgccgccgaa	Protospacer
**************************************

67. spacer 2.66|25141|38|NZ_CP040759|CRISPRCasFinder matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

ctagcctctgacgggcctctcagcgaagctctatgcat	CRISPR spacer
ctagcctctgacgggcctctcagcgaagctctatgcat	Protospacer
**************************************

68. spacer 2.67|25207|37|NZ_CP040759|CRISPRCasFinder matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

atgccttgaactgagtggtttcgcccattatgagggc	CRISPR spacer
atgccttgaactgagtggtttcgcccattatgagggc	Protospacer
*************************************

69. spacer 2.68|24810|42|NZ_CP040759|PILER-CR matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

tggaacgcgctctttctccagatagactaggtcctgccccgg	CRISPR spacer
tggaacgcgctctttctccagatagactaggtcctgccccgg	Protospacer
******************************************

70. spacer 2.69|24874|42|NZ_CP040759|PILER-CR matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

tgtggcggggtcttctagcccctcccaatcggtgtgagtggt	CRISPR spacer
tgtggcggggtcttctagcccctcccaatcggtgtgagtggt	Protospacer
******************************************

71. spacer 2.70|24938|45|NZ_CP040759|PILER-CR matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

tgggaccagatagcggcggaacaggtcggtgcccatggggactgc	CRISPR spacer
tgggaccagatagcggcggaacaggtcggtgcccatggggactgc	Protospacer
*********************************************

72. spacer 2.71|25005|42|NZ_CP040759|PILER-CR matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

ggggacgcgcagttgcttgttgacgccttccagtccggtctt	CRISPR spacer
ggggacgcgcagttgcttgttgacgccttccagtccggtctt	Protospacer
******************************************

73. spacer 2.72|25069|44|NZ_CP040759|PILER-CR matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

ggggactccgctgctgcgtcgtgcggcagatacatgccgccgaa	CRISPR spacer
ggggactccgctgctgcgtcgtgcggcagatacatgccgccgaa	Protospacer
********************************************

74. spacer 2.73|25135|44|NZ_CP040759|PILER-CR matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

ggggacctagcctctgacgggcctctcagcgaagctctatgcat	CRISPR spacer
ggggacctagcctctgacgggcctctcagcgaagctctatgcat	Protospacer
********************************************

75. spacer 2.74|25201|43|NZ_CP040759|PILER-CR matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 0, identity: 1.0

ggggacatgccttgaactgagtggtttcgcccattatgagggc	CRISPR spacer
ggggacatgccttgaactgagtggtttcgcccattatgagggc	Protospacer
*******************************************

76. spacer 2.45|23775|37|NZ_CP040759|CRISPRCasFinder matches to NZ_CP013856 (Pseudonocardia sp. HH130630-07 plasmid pLS2-2, complete sequence) position: , mismatch: 8, identity: 0.784

gccatcggacgctgacgcggtcgtgcatgtccccgcc	CRISPR spacer
tccgcttggcgttgacgcggtcgtgcatgaccccgcc	Protospacer
 **... *.**.***************** *******

77. spacer 2.42|23580|37|NZ_CP040759|CRISPRCasFinder matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.757

cccgttcatcgacgccctgatctcggggctggagaag	CRISPR spacer
cgcccatatcgacgccctgatcgccgggctggagcac	Protospacer
* * . .*************** * ********* *

78. spacer 2.64|25011|36|NZ_CP040759|CRISPRCasFinder matches to MT613935 (Pseudomonas phage Persinger, complete genome) position: , mismatch: 10, identity: 0.722

gcgcagttgcttgttgacgccttccagtccggtctt	CRISPR spacer
ttcgtgttccttgttgacgccttccagttcggcttc	Protospacer
 .   *** *******************.***..*.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

19088 : 43561

Stx2-converting_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_139615601.1\|19088_20645_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.8e-97	41.9
WP_139615602.1\|20699_20894_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_135312179.1\|20939_22211_-\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	1.5e-99	48.5
WP_139615603.1\|22273_22462_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_139615604.1\|22458_22848_-\|transposase	transposase	NA	NA	NA	NA
WP_139615605.1\|25355_27389_-	DEAD/DEAH box helicase	NA	NA	NA	NA
WP_139615606.1\|27381_28068_-	hypothetical protein	NA	NA	NA	NA
WP_139615607.1\|28067_29069_-	type I-D CRISPR-associated protein Cas7/Csc2	NA	NA	NA	NA
WP_139615608.1\|29077_31990_-	hypothetical protein	NA	NA	NA	NA
WP_139615609.1\|32001_32706_-	hypothetical protein	NA	NA	NA	NA
WP_139615610.1\|32786_33746_+	WYL domain-containing protein	NA	NA	NA	NA
WP_139615611.1\|34161_35514_+\|transposase	IS5 family transposase	K4ICS3	Acidithiobacillus_phage	2.5e-52	45.7
WP_139615612.1\|35634_36228_-	plasmid pRiA4b ORF-3 family protein	NA	NA	NA	NA
WP_139615613.1\|36164_36506_-	hypothetical protein	NA	NA	NA	NA
WP_139615614.1\|39206_39812_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_139615615.1\|40347_41127_-	hypothetical protein	NA	NA	NA	NA
WP_139615515.1\|41066_41495_+\|transposase	transposase	NA	NA	NA	NA
WP_139615503.1\|41491_41845_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_139615504.1\|41908_43561_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	2.4e-73	37.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

5. NZ_CP040758

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP040758_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040758_1

55130-55250

Orphan

Consensus_repeat	Method
ACCTCGCCCCAAAAGTCACCATGC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP040758_1

>merge|NZ_CP040758|1|55130-55250|CRISPRCasFinder
ACCTCGCCCCAAAAGTCACCATGCGTATAAATCGGGTTGGGGCAAAGCAAAGGACCTCGCCCCAAAAGTCACCATACCTCGCCCAGAAAGTCACCTTACCTCGCCCAAAAAGTCACCATAC

>NZ_CP040758|1|1|55130-55250|CRISPRCasFinder
ACCTCGCCCCAAAAGTCACCATGC	GTATAAATCGGGTTGGGGCAAAGCAAAGG
ACCTCGCCCCAAAAGTCACCATAC	CTCGCCCAGAAAGTCACCTT
ACCTCGCCCAAAAAGTCACCATAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040758.1\|WP_135816305.1\|53166_53442_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040758.1\|WP_135816306.1\|53512_54139_-\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113
NZ_CP040758.1\|WP_139615561.1\|63765_64320_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040758.1\|WP_139615557.1\|55614_56001_-\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|290319
NZ_CP040758.1\|WP_139615564.1\|67405_68248_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|372681
NZ_CP040758.1\|WP_139615562.1\|64340_65921_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040758.1\|WP_139615551.1\|45789_47151_-\|phosphate-ABC-transporter-permease-PstA	unknown	unknown	gnl\|CDD\|223654
NZ_CP040758.1\|WP_139615555.1\|52109_52991_+\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|239737
NZ_CP040758.1\|WP_139615556.1\|54196_55036_-\|RepB-family-plasmid-replication-initiator-protein	unknown	unknown	gnl\|CDD\|376444
NZ_CP040758.1\|WP_139615563.1\|65917_67225_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340850
NZ_CP040758.1\|WP_135816299.1\|44984_45779_-\|phosphate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|237645
NZ_CP040758.1\|WP_139615553.1\|48671_49718_-\|phosphonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270372
NZ_CP040758.1\|WP_139615559.1\|59729_61109_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040758.1\|WP_139615560.1\|61111_63754_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340831
NZ_CP040758.1\|WP_139615552.1\|47147_48608_-\|phosphate-ABC-transporter-permease-subunit-PstC	unknown	unknown	gnl\|CDD\|223646
NZ_CP040758.1\|WP_135312247.1\|56114_57143_+\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|226077
NZ_CP040758.1\|WP_139615582.1\|50315_50900_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	unknown
NZ_CP040758.1\|WP_139615565.1\|68247_69750_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040758.1\|WP_139615554.1\|51354_51738_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040758.1\|WP_139615558.1\|57358_57751_-\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|379129

Protein	Function_ID	Function_description	E-value
NZ_CP040758.1\|WP_135816306.1\|53512_54139_-\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	5.20794e-33
NZ_CP040758.1\|WP_139615557.1\|55614_56001_-\|IS5-family-transposase	gnl\|CDD\|290319	pfam13586, DDE_Tnp_1_2, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	4.36486e-12
NZ_CP040758.1\|WP_139615564.1\|67405_68248_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|372681	pfam13704, Glyco_tranf_2_4, Glycosyl transferase family 2. Members of this family of prokaryotic proteins include putative glucosyltransferases,.	2.83806e-08
NZ_CP040758.1\|WP_139615551.1\|45789_47151_-\|phosphate-ABC-transporter-permease-PstA	gnl\|CDD\|223654	COG0581, PstA, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism].	9.43073e-88
NZ_CP040758.1\|WP_139615555.1\|52109_52991_+\|recombinase-family-protein	gnl\|CDD\|239737	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1.	1.56898e-52
NZ_CP040758.1\|WP_139615556.1\|54196_55036_-\|RepB-family-plasmid-replication-initiator-protein	gnl\|CDD\|376444	pfam01051, Rep_3, Initiator Replication protein. This protein is an initiator of plasmid replication. RepB possesses nicking-closing (topoisomerase I) like activity. It is also able to perform a strand transfer reaction on ssDNA that contains its target. This family also includes RepA which is an E.coli protein involved in plasmid replication. The RepA protein binds to DNA repeats that flank the repA gene.	1.72727e-23
NZ_CP040758.1\|WP_139615563.1\|65917_67225_+\|glycosyltransferase	gnl\|CDD\|340850	cd03823, GT4_ExpE7-like, glycosyltransferase ExpE7 and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).	1.30186e-50
NZ_CP040758.1\|WP_135816299.1\|44984_45779_-\|phosphate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|237645	PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional.	0
NZ_CP040758.1\|WP_139615553.1\|48671_49718_-\|phosphonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270372	cd13654, PBP2_phosphate_like_2, Substrate binding domain of putative ABC-type phosphate transporter, a member of the type 2 periplasmic binding fold superfamily. This subfamily contains uncharacterized phosphate binding domains found in PstS proteins that serve as initial receptors in the ABC transport of phosphate in eubacteria and archaea. After binding the ligand, PstS interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The PstS proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.0503e-62
NZ_CP040758.1\|WP_139615560.1\|61111_63754_+\|glycosyltransferase	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	1.11602e-36
NZ_CP040758.1\|WP_139615552.1\|47147_48608_-\|phosphate-ABC-transporter-permease-subunit-PstC	gnl\|CDD\|223646	COG0573, PstC, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism].	9.1782e-99
NZ_CP040758.1\|WP_135312247.1\|56114_57143_+\|IS110-family-transposase	gnl\|CDD\|226077	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.63533e-34
NZ_CP040758.1\|WP_139615558.1\|57358_57751_-\|IS5-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	7.4962e-25

>NZ_CP040758.1|WP_139615556.1|54196_55036_-|RepB-family-plasmid-replication-initiator-protein
MQDEPRPKSHDSNSGTLGAFQRRGEVIKPAELIEVRGGEKITLAARRIYNQLLSNAFGPDMAAEGQEYRIPFSELRGNHTSNDRVTEAILSLMQTVVRVRMSDGSTRNVHLLGPTDVEKFGPGIATMLTYELHSKLLPILRDSQIFARLEMQILHGFGTKYGMALYEMIAKRIGLKHIIYNDFETDELRDYLGVPHGKLGPFAALRRKAIEPAVAEVNALAPFSCSVDVAEKQGRKVTKLRLSWWTKSVEEQKAQWQAQKEKQDDLFSVIPPEIINWDE
>NZ_CP040758.1|WP_135816306.1|53512_54139_-|ParA-family-protein
MQVITIAMQKGGVGKSTLARSLAVAAARDGLSVLMIDMDAQQSVSQWAERREADMPVVVFSTENELPKKLSQAKDAADLVIIDTPPARSTEAPAAVEVADLVLIPTTPDVEPLEQMPRTLRLCRGFSRPVFAVVNMANPTGPAEVAYTREVIEAMGAQTAPVVLHRRKAHRDASAAGLTVQELANAGKAADEVSALWAWVRAELRNCK
>NZ_CP040758.1|WP_135816305.1|53166_53442_-|hypothetical-protein
MKKANPLLAAMGKVAEPAPLEEKLVADPALTKGSGKRVGQKHLGAYFEKGDPILERVAILRARLDMTNSELIEHALNELWNRHEAGRAFGE
>NZ_CP040758.1|WP_139615555.1|52109_52991_+|recombinase-family-protein
MPLIGYARVSTEDQTPLPQVQALTAAGCAKIHEEYASGGDRARPVLARVLEQIRKGDTLVVVRIDRLARSLSHLLEVIERLEARGAFFRSIEDPIDTASPQGKFTLQVLGAAAEFERALIRERTKAGLASARSAGRVGGNPGLRARDPAALRKVRLARHEGYMDRLSGTAQDWVPLVRRLRPDMAWEDVLRLVNAPLPPSRHWTQARLLRATRAYVRDGFLPETVLGRAARCDSDDRLPALVAAIRGADPDITLQAICDRLEAMRERTPRGRTTWQPSSVRLLLQRAGKLGML
>NZ_CP040758.1|WP_139615554.1|51354_51738_-|hypothetical-protein
MLALPAAEAAGARERLVNIEVEVEAMLRAQGLMLGRDEIGRELMEARAASDPEALRLARWAVRRLEGQGALMDLPAFLGLHRRVTSDEPSSPSMDLRLQGRELDGAAVKFSGGSRCLHSVAPAGARP
>NZ_CP040758.1|WP_139615582.1|50315_50900_+|helix-turn-helix-domain-containing-protein
MGCRVLEQLPDRRLQGSWVQTERVAHEAWMILIAKSPMGAQIMHALTARLGDHNAVVISQVSLAKIIGRSERAVRTAISVLKADNWIEVRQLGNAATVNAYVINDRVAWTGKRDGIRYSLFSAAVVVSEEEQPDRESLGRQAALRRIPDLLQSEAQMPAGQGLPPISQPALPMMEPDLPATRRTYDLETGELLD
>NZ_CP040758.1|WP_139615553.1|48671_49718_-|phosphonate-ABC-transporter-substrate-binding-protein
MKTFGLTATAVSVLALSAFAAAAQTREQVQVAGSSTVLPYATIVAEAFAENFDFPSPVIESGGSGAGRQRFCEGVGENTIDIANSSSRITQNDIDRCTENGVTEIMEVRFGYDGIVFASPVGGESFAFTPADWFNALAAEVVVDGEVVANPHTSWSDVNSDLPDQEILAFIPGTRHGTREVFDENVILAGCEETGAMEVFMEAGADEDTAEGMCTTLRTDGVSVDIDGDYTETLARVAADANGIGVFGLSFYSNNTATLQVATMSGVTPSTQTIASGEYPVSRPLYFYVKNAHLDVIPGLQEYVSFFVSDDMAGPNGPLANYGLVSDPELAETQEMVENRTPMGALED
>NZ_CP040758.1|WP_139615552.1|47147_48608_-|phosphate-ABC-transporter-permease-subunit-PstC
MSVFFLFAFIAVLAVAGYVVCRRRALASADGNIRCMHSLPSHYGWHGAIMAAVPALFGLAIWLLAQPLVIERQLQNYFPPEQVENPSAMTLLMGDVRRVAAGIDVAVARGALSETEASELNTASTDVRQALAAVGVALGAQVTPQVLAAAQDYRASATFGAIGRSILVIVLALAGFAYAVRITDRDFRARNRVERVSLALLALASVIAILTTIGIVLSLLSESARFFTFYPVGDFFFGLTWSPNFRGNSELGLLPLLWGTLYISLVAMIVAVPLGIFAAIYLAEYASPTARSILKPMIEIIAGIPTVVFGLFALVTVGPFLRDYFAQPLGLGNSGSSVMTAGIVIGILNIPFISSLSDDIINAVPQSMRDGSLGLGATKSETIKQVVLPAALPGIVGAVLMAASRAIGETMIVTMGAGAAARMDLNPFEAMTTITVKIVSQLTGDTEFNSPETLVAFALGLTLFVFTLVLNIVALLIVRRYREQYE
>NZ_CP040758.1|WP_139615551.1|45789_47151_-|phosphate-ABC-transporter-permease-PstA
MTDATAADLPASGGRPNKSILVEDALTRRRNRSEKRFMLYGLGAITISLLVLFIMLFTIFRDGTSAFFQASLSFPVTLDAEQLDEDGNRDPAEMASVTTIGYGNLLRASLVDYLAAEGISTDEIEEGNVGSLISRDGPAQLRDRVLADPDLIGQTVDVKIFATSRLDGYLKGRVTMETALLDSNVSPEQLQLADRLSEAGILTTAFNLQFLTAADASDQRPEAAGLGVAIIGSAYMMLLVLIMALPIGVAASIYLEEFAPKNWITDVIEVNISNLAAVPSIVYGILGLALFINFAGLPQSSTLVGALVLTLMTLPTIIIATRASLRAVPPSIRDAALGVGASKMQTVFHHVLPLAMPGILTGTILGLATALGETAPLLLIGMVAFVGDYPASPLDGGFLDPATALPVQVYAWASRSDPAFIERSSGAIIVLLGFLLVMNAVAIVLRRRFERRW
>NZ_CP040758.1|WP_135816299.1|44984_45779_-|phosphate-ABC-transporter-ATP-binding-protein
MNDMRVDRIMAKNENKITARNVQVYYGDKQAIKDLNVEILDKTVTAFIGPSGCGKSTFLRCLNRMNDTISSAKVEGEILLEGENIYDSKVDPVQLRAKVGMVFQKPNPFPKSIYDNVAYGPRIHGLARNKAELDEIVETALRGAALWTEAKDRLSEPGTGLSGGQQQRLCIARAVATSPEVLLMDEPCSALDPIATSQVEELIDQLRQQFSVVIVTHSMQQAARVSQKTAFFHLGNLVEYGDTDDIFTRPQDSRTEAYISGRIG
>NZ_CP040758.1|WP_139615557.1|55614_56001_-|IS5-family-transposase
MTTKILALTDALGNLVDFRLLPGQAHDLRAVPELISNLSADYLLADRAFDADWLRAELSERRIVPVIPPKANRRFPAAFDKDTYKWRHLIENYFGKLKENRGIAMRSCKTDESFKAFISIAATVIQLR
>NZ_CP040758.1|WP_135312247.1|56114_57143_+|IS110-family-transposase
MSIVIVGIDLGKNSCSIVGLDSLGTVVVRRRLRRDGVIAFASKLPACIMAMEACCGAHHMGRSLAALGHEVRLMSPEYVRPYVKAQKNDDRDAEAIAEAATRPTMRFVELKSEEQLDVQTLHRVRDRLVGERTSLTNQIRSLLLERGHVVAQGHARLRHLLADMLDPGTGSLSPRMAFLLGDMRTRWDELDRRIAAFDAEFAAMARTDERARRLTSIPGIGALNATALVAAVGNAATFTKGRNLAAWLGLVPRQATTGGKPKLLGITKRGSRYLRKMLIQGARSAMPTLAKANSAVGAWLRALLVRTHPNVAVVALAAKMARTVWALLRHGRNYEAVPQAAG
>NZ_CP040758.1|WP_139615558.1|57358_57751_-|IS5-family-transposase
MIQGRKEWRATLTRRALTDAQWAIIEPFCLGKRSDPGQTGRDPRLFVEAVLWIVRTGAQWRELPDEFGKWNSVFKRFRRWVKADAFYRMFKILSTVADFEYAMIDGSIVKVHRSGQGANVWPAPSASGNF
>NZ_CP040758.1|WP_139615559.1|59729_61109_+|hypothetical-protein
MTFAYSIAVDPTLARVCDGLLERHLPPTLLGMLDVAETDGPVPGRTCLAQLMPLGAGADEAKRLSESGHHGLPVIEVDPEHPELLAERVTALLVERLQRSETTAAASREAAALLRRENISGAGRFREIESFLHALGNPHVAQSLNWEPSGTVAELPADGSVVQHLPLNIVSITAIDLWLPERLHVRNCEIRVSLQDSTGDEHALAEIPDEMRIGSGWVRFALPMALQGDARNCSLILRNAGPARLVVGLGMRMPDARFTAQGDTMPGDQVLALRVWKALAGASIPERRDAPMIDPRLEMTASLLQPSALPAPEIFGMPSSATDYITADFWAAEDAIMVHPSRSGAVCAVIRDVPMRGLLQLSAVVNTGHARSPNLNFAIGVTPHRAIGRDGIWESCMGSWVHGLPANGWGQVHCVPKGPIERADIYLATSLAQDMPNEHSWGLFRSFRAVTGQRATQEE
>NZ_CP040758.1|WP_139615560.1|61111_63754_+|glycosyltransferase
MQHSPIRLVPPQVTVVIPVKGHPVLLDDAIASVRREMAEGVILRLVVVNDGCAYTETRQCLDDWQARMGSQMLVLHHANGGLSSARNRGIEAALRMDPGLDAIFLLDSDNLLAERAGLTMRHLLETHRDQDWFYPEFDFFGQAGNYRTEPAFSPLLQAEANQCDAGSLIRRRVFDAGLRFDEEMRQGYEDWDFWLQAAKAGFTGRSARRPLLLYRKRPASMLSHSHEVDQDLRRFLRRKHAWLFNPAALVALEAASFPRFALITGEGRQVSTCVDPDHQTPVATPEFERMVLAAMADPHANHAPAYMIFLREGVEEYLRAARLLHGVLWNFERRALRNPHDLDLLFLDRHPSGGHDIATDSGNPDRVPDAICLRLSTAQDWVQRGAEDRLRQLDLVPTQEDVSSWTLRAPAHVGGLAGGAAAGEVLRGTMLALLRSPYLGALQTGWGWRHPGAAISRDRTVQIPRNAVDGGVTFPLLRAPGKHDIAMVLPIFNIGGVERVAASIARELVTAGHRLHLVVLSDRPIDTDAWSLEPFSTITWQADNDALDWSGEEFLGTAEPRWGQGAEGTDLMGLLGGMDAVINAHSAALHKVADRLRRRGVLMIDHEHLVERSTYGRGYGPPQLALAYEQAYDLFLTCSEGLLGWMHANGVPREKLMPVVNAPGYPMSRAEQGFMTAARATARTRRQPLRVLFLGRLDKQKGIDRVCAVAHALSDQAPRITLSVAGRAIVEEDGAALSWPTETRFLGAVRGPAAISELLGQTDILILPSLYEGLPLSVLEAQRCGVVPIVAEAGAVREAIEDGHNGFVVPQVDCAEQMVARILMLDGDRARLAAMAQAAAETSRTWAQATEGLRDWLDQRLPEFPAPAPADAVRPRYVFS
>NZ_CP040758.1|WP_139615561.1|63765_64320_+|hypothetical-protein
MPQTIHDSAVRNFQMAANLLIALQGRRLVLTGEAAALLDGRPKALLSEGYNALSPRFGICIPQDTRGEFSMTPEGDGLEFRNSGATWMTMEGLVSSMDPCSCYLDADVAFPTPTVADVFLRDFTDAGTIRDSLQTEWLLGNDRATVCKLELPEAADDVANRRIVIHLRQPPVRFTIRKLAMTLI
>NZ_CP040758.1|WP_139615562.1|64340_65921_+|hypothetical-protein
MDLKLHVDFCFSCPGGRVVAAGWSQDPRPALMIHAGSASLPPAHLVRFARRDLRSLEPFGYLAVFDLSDHPDALDDPSEDVFLAVGAEHSRIGGARLSSDARSMVEIGVDEAFFALLRLMAEGAVPMPDRALSGPVITRIRAARALPAEAETHALSVDLGQVAGAGQGVASGWFLPTAATQGALHALAFDDRQLARVTMAQGAVARTDLAAYADRYVYGGRDGWLAAFRFAGPASGAARLLVMLPEQLAESGVIHPLTQVTVPQIARLLVEARLWQEDPEGADALHRATLAAPGAPAIALPDSPPLPDDAPLLLILDHDLAAPDLRDVLRRVAQATGRGIDLHLLRPTLTPDLRDAIAGAARECPQPVRIVACTPQPPIAAQGPALLVYARSSVLFHLAGRLPVRGEVPGHDLQVLALDVLASLPGGAGRIAARFGTDRPAFLCWGDAAGLLPALAPLLGDALVPESAFRQLAAQMDAAGRLAILPADPTGFHAGDQGPFAAPLFDSLTGHDFDALSARLVQEDAR
>NZ_CP040758.1|WP_139615563.1|65917_67225_+|glycosyltransferase
MTRTVIISHSHPALRYGGGEVAAHRQFQHMLAGGEDVYFVGSTIGPEDGARFFGPAQRVLSFSDRDFCLRGLGMDAFVMEHPRIETEDWLLDFLLALEGDVYHFHHFWNIGAGTLRRLRAARPQAQMICTLHEMTAICANHGQMVKTSGELCHAASDVACAACLKRSPADFMLRRARMAGMLDLFDVLLSPSQFMADRFEAWGTAPGRVGVIENGLDHGDRPPVQSQADLTRRSRRFAFFGQATPTKGLDVLIRATQEIDAQMRAQNVAPPVAAPAPAKASARSAPRAAVPTAPLAPISLEIYGVTAEGFAALWPALTPPDWVRFRGRYRPQDCIAIMRRFGWIVIPSVWWENSPVVIQEARAAGTPMIASDIGGMAEKTAGWGVQFPVGDPDALASAILSVHDRPEILAQHIALIAPPLDMAGFMKEWRVACDI
>NZ_CP040758.1|WP_139615564.1|67405_68248_+|glycosyltransferase-family-2-protein
MRVAVFTMSYNEDVTLPIWVKYYGGLFGRENLFVIDHGSNDGSTEGLHGVNLIKLPRTAFSDLKRSKMISDLCENFLNFYDYFIYTDTDEFLCVDPSKHKDLKTYLQEVRPEYETAIGLNIFHSFDEEPEFNSSRKVLSQRNYVYFMASMCKTLITKEPIKWGGGFHTCDKRQSFGEVYNFHSKFMDRGIALDRLRVLRNIPRDGNFGNHQMILDHDLMLAYAQINSRHRGSDFEFSENINELLSLVELDASGKYVYDLDYNGDTPYHLRKIPETFKGVF
>NZ_CP040758.1|WP_139615565.1|68247_69750_+|hypothetical-protein
MFTYIKVFGERNSGTIYLTGLIHENTNAIILQGDTRGRGGQLRMENEVFSAAYTSDNDYLQDMDHFRILNSDFGWKHAKPPIDTIEFSPYKKLTKFIFTTKHPAFWLQSIHKRPYNPKIGRIGTFSEFIRTPWPVSRRDNLDCEVLDNPIEIFNKKVKSYFEAINKFPENATFIKYEDVLADPEGATKKACEDVLGANKEQFKNILKSTKSNEENFNYYQKKYLSNDYLNDIADEDLQFISNKLDPEIMKLCGYEIAAKSSLYASHQMPKDSPSASTPSPSTILAASRRFEALGENCEMGFALRKAGNEDGQIFRWAIVPISSIILLIKQRPQEIYKKESLIPCDHDMVRDIDISISFHCAHKFERQADGSWKSLGTDEQDTNFYKRDAEKISYMYSKFLRKLSTKGTIFVYKSMNRPSDIEISDLSNAIETSSSGVAALAIVYQDESIPSRIDITYPNNRLSIVKMKELVDNKFSGTSDYLQWHEMFVSLDQHFGPSDS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP040758_1	1.1\|55154\|29\|NZ_CP040758\|CRISPRCasFinder	55154-55182	29	NZ_CP040758	Paracoccus sp. 2251 plasmid unnamed7, complete sequence	55154-55182	0	1.0
NZ_CP040758_1	1.2\|55207\|20\|NZ_CP040758\|CRISPRCasFinder	55207-55226	20	NZ_CP040758	Paracoccus sp. 2251 plasmid unnamed7, complete sequence	55207-55226	0	1.0

1. spacer 1.1|55154|29|NZ_CP040758|CRISPRCasFinder matches to NZ_CP040758 (Paracoccus sp. 2251 plasmid unnamed7, complete sequence) position: , mismatch: 0, identity: 1.0

gtataaatcgggttggggcaaagcaaagg	CRISPR spacer
gtataaatcgggttggggcaaagcaaagg	Protospacer
*****************************

2. spacer 1.2|55207|20|NZ_CP040758|CRISPRCasFinder matches to NZ_CP040758 (Paracoccus sp. 2251 plasmid unnamed7, complete sequence) position: , mismatch: 0, identity: 1.0

ctcgcccagaaagtcacctt	CRISPR spacer
ctcgcccagaaagtcacctt	Protospacer
********************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

8985 : 57751

Paenibacillus_phage(20.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_139615525.1\|8985_9393_-\|transposase	IS5 family transposase	A0A0N9SJT9	Paenibacillus_phage	8.3e-12	35.3
WP_135312247.1\|9485_10514_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_139615526.1\|11705_12014_+	hypothetical protein	NA	NA	NA	NA
WP_139615527.1\|13997_14312_-	thermonuclease family protein	NA	NA	NA	NA
WP_135817904.1\|15333_15687_-	hypothetical protein	NA	NA	NA	NA
WP_139615528.1\|16330_16540_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_139615529.1\|17681_17900_+	hypothetical protein	NA	NA	NA	NA
WP_139615530.1\|17998_18694_+	sulfotransferase family 2 domain-containing protein	NA	NA	NA	NA
WP_139615531.1\|19347_20484_+	DUF563 domain-containing protein	NA	NA	NA	NA
WP_139615532.1\|21654_21957_+	hypothetical protein	NA	NA	NA	NA
WP_139615533.1\|21931_24181_+	glycosyltransferase family 92 protein	NA	NA	NA	NA
WP_139615534.1\|24237_26364_+	hypothetical protein	NA	NA	NA	NA
WP_139615535.1\|26496_27315_+	hypothetical protein	NA	NA	NA	NA
WP_139615536.1\|27652_28138_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_139615537.1\|28343_29546_+	Hint domain-containing protein	NA	NA	NA	NA
WP_139615538.1\|29602_30523_-\|transposase	IS5 family transposase	A0A1V0E8E1	Vibrio_phage	8.1e-39	33.0
WP_139615539.1\|30831_32421_+	DUF563 domain-containing protein	NA	NA	NA	NA
WP_139615540.1\|32949_33627_+	outer membrane beta-barrel protein	NA	NA	NA	NA
WP_139615541.1\|34085_35180_-	hypothetical protein	NA	NA	NA	NA
WP_139615542.1\|35176_35737_-	transferrin-binding protein-like solute binding protein	NA	NA	NA	NA
WP_139615543.1\|35859_36054_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	1.4e-06	67.5
WP_139615544.1\|36160_37333_-	DUF563 domain-containing protein	NA	NA	NA	NA
WP_139615581.1\|37772_38027_+	DUF560 domain-containing protein	NA	NA	NA	NA
WP_139615545.1\|38073_38655_-	hypothetical protein	NA	NA	NA	NA
WP_139615546.1\|38951_39650_-	hypothetical protein	NA	NA	NA	NA
WP_139615547.1\|39706_41254_-	hypothetical protein	NA	NA	NA	NA
WP_139615548.1\|41336_42017_+	NTP transferase domain-containing protein	NA	NA	NA	NA
WP_139615549.1\|42257_42866_-	CatB-related O-acetyltransferase	A0A1V0SAW9	Catovirus	5.4e-15	28.3
WP_135816297.1\|43536_44226_-	phosphate regulon transcriptional regulatory protein PhoB	W8CYM9	Bacillus_phage	1.5e-37	35.4
WP_139615550.1\|44229_44949_-	phosphate signaling complex protein PhoU	NA	NA	NA	NA
WP_135816299.1\|44984_45779_-	phosphate ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.9e-12	31.0
WP_139615551.1\|45789_47151_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA
WP_139615552.1\|47147_48608_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA
WP_139615553.1\|48671_49718_-	phosphonate ABC transporter substrate-binding protein	A0A1B1IWY0	uncultured_Mediterranean_phage	8.9e-58	38.0
WP_139615582.1\|50315_50900_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_139615554.1\|51354_51738_-	hypothetical protein	NA	NA	NA	NA
WP_139615555.1\|52109_52991_+	recombinase family protein	A0A0C4UR34	Shigella_phage	3.2e-32	54.7
WP_135816305.1\|53166_53442_-	hypothetical protein	NA	NA	NA	NA
WP_135816306.1\|53512_54139_-	ParA family protein	M4HZI5	Mycobacterium_phage	2.7e-09	44.7
WP_139615556.1\|54196_55036_-	RepB family plasmid replication initiator protein	NA	NA	NA	NA
WP_139615557.1\|55614_56001_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_135312247.1\|56114_57143_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_139615558.1\|57358_57751_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	2.3e-19	42.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

6. NZ_CP038439

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

993578 : 1014779

Bacillus_virus(33.33%)

holin,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_135312380.1\|993578_994319_-\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_135312381.1\|994474_995110_+\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	1.2e-60	60.0
WP_135312382.1\|995271_996537_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.7e-135	58.8
WP_135312383.1\|996632_997007_+	NADH:ubiquinone oxidoreductase subunit NDUFA12	NA	NA	NA	NA
WP_135312384.1\|997008_997485_+	outer membrane lipid asymmetry maintenance protein MlaD	NA	NA	NA	NA
WP_135312385.1\|997481_997844_+	DUF2155 domain-containing protein	NA	NA	NA	NA
WP_135312386.1\|997810_998440_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_135312387.1\|998446_999793_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
WP_135312388.1\|999797_1000310_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA
WP_135312389.1\|1000439_1000748_-	phosphoribosyl-ATP diphosphatase	NA	NA	NA	NA
WP_135312390.1\|1000752_1001514_-	imidazole glycerol phosphate synthase subunit HisF	NA	NA	NA	NA
WP_135312391.1\|1001647_1002364_-	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase	NA	NA	NA	NA
WP_135312392.1\|1002503_1002887_+	DUF2147 domain-containing protein	NA	NA	NA	NA
WP_135312393.1\|1002973_1003792_+	alpha/beta hydrolase	A0A0B5A484	Mycobacterium_phage	9.5e-07	26.8
WP_135312394.1\|1003842_1005018_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA
WP_135312395.1\|1005132_1005810_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	3.0e-06	26.2
WP_135314327.1\|1005806_1006925_-	sugar transporter	NA	NA	NA	NA
WP_135312396.1\|1007282_1008143_+	ABC transporter permease	NA	NA	NA	NA
WP_135312397.1\|1008148_1009159_-\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.1e-19	31.6
WP_135312398.1\|1009155_1010004_-\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_135314328.1\|1010069_1011029_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_135312399.1\|1011137_1011704_+	transcriptional regulator BetI	NA	NA	NA	NA
WP_135312400.1\|1011700_1013146_+	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_135312401.1\|1013132_1014779_+\|holin	choline dehydrogenase	A0A1V0SI18	Klosneuvirus	3.9e-60	32.1

DBSCAN-SWA_2

1364714 : 1374575

Paracoccus_phage(22.22%)

protease,portal,capsid,head,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_135314358.1\|1364714_1366109_+	DNA-packaging protein	A0A1V0DY66	Dinoroseobacter_phage	1.6e-67	36.6
WP_135312688.1\|1366220_1367420_+\|portal	phage portal protein	W8ECU7	Geobacillus_phage	1.5e-61	37.8
WP_135312689.1\|1367423_1367654_+	hypothetical protein	NA	NA	NA	NA
WP_135312690.1\|1367657_1368188_+\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	1.8e-35	51.8
WP_135312691.1\|1368316_1369480_+\|capsid	phage major capsid protein	A0A2D1GNH4	Pseudomonas_phage	1.3e-62	40.3
WP_135312692.1\|1369678_1370293_+	hypothetical protein	NA	NA	NA	NA
WP_135312693.1\|1370292_1370631_+\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_135312694.1\|1370627_1371047_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_135312695.1\|1371059_1371473_+\|tail	phage major tail protein, TP901-1 family	A0A0C5AMZ4	Paenibacillus_phage	4.1e-06	31.0
WP_135312696.1\|1371472_1371787_+	gene transfer agent family protein	NA	NA	NA	NA
WP_135312697.1\|1371783_1372050_+\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_135314359.1\|1372063_1372681_+\|tail	phage tail tape measure protein	C0LP53	Escherichia_virus	3.2e-15	44.8
WP_135312698.1\|1372694_1373327_+	DUF2460 domain-containing protein	A0A0B5A2K3	Paracoccus_phage	5.2e-53	48.6
WP_135312699.1\|1373323_1374154_+	DUF2163 domain-containing protein	A0A0K0PVK1	Roseobacter_phage	1.4e-45	38.3
WP_135312700.1\|1374146_1374575_+	peptidase	F4YXU4	Roseobacter_phage	3.2e-30	47.1

DBSCAN-SWA_3

1568601 : 1581427

Pseudomonas_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_135312864.1\|1568601_1569108_-	hypothetical protein	A0A1B0T6I8	Thiobacimonas_phage	3.6e-12	43.7
WP_135314376.1\|1569111_1569936_-	DUF3380 domain-containing protein	A0A0A8IK88	Aurantimonas_phage	2.2e-72	54.1
WP_135312865.1\|1570277_1570673_-	hypothetical protein	NA	NA	NA	NA
WP_135312866.1\|1570663_1570843_-	hypothetical protein	NA	NA	NA	NA
WP_135312867.1\|1570839_1571082_-	hypothetical protein	NA	NA	NA	NA
WP_135312868.1\|1571170_1571998_-	hypothetical protein	NA	NA	NA	NA
WP_135312869.1\|1571997_1574202_-	hypothetical protein	B5TAB2	Burkholderia_phage	2.5e-70	38.5
WP_135312870.1\|1574201_1574540_-	hypothetical protein	NA	NA	NA	NA
WP_135312871.1\|1574623_1574923_-	hypothetical protein	A0A0S4L5F0	Pseudomonas_phage	4.8e-17	52.9
WP_135312872.1\|1574922_1575615_-	hypothetical protein	A0A1Y0SUE0	Pseudomonas_phage	8.3e-12	35.0
WP_135312873.1\|1575662_1576556_-	hypothetical protein	NA	NA	NA	NA
WP_135312874.1\|1576552_1581427_-	hypothetical protein	A0A2H4JC10	uncultured_Caudovirales_phage	1.3e-13	27.6

DBSCAN-SWA_4

2165956 : 2241515

Acidithiobacillus_phage(23.08%)

head,terminase,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_135313367.1\|2165956_2167453_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_135311672.1\|2167449_2168214_+	ATP-binding protein	A0A059NT77	Lactococcus_phage	9.4e-41	38.5
WP_135313368.1\|2171224_2171530_+\|head	phage head closure protein	NA	NA	NA	NA
WP_135313369.1\|2171526_2171913_+\|terminase	phage terminase small subunit P27 family	NA	NA	NA	NA
WP_135314432.1\|2171917_2173582_+\|terminase	terminase large subunit	D0R0D0	Streptococcus_phage	4.1e-65	31.0
WP_135313370.1\|2173592_2176130_+	hypothetical protein	A0A291AUM6	Sinorhizobium_phage	3.6e-52	38.7
WP_135313371.1\|2176126_2176486_+	hypothetical protein	NA	NA	NA	NA
WP_136883980.1\|2176519_2176744_-	hypothetical protein	NA	NA	NA	NA
WP_135313372.1\|2177039_2177312_+	hypothetical protein	NA	NA	NA	NA
WP_135313373.1\|2177308_2177545_+	hypothetical protein	NA	NA	NA	NA
WP_135313374.1\|2177792_2179841_-	bifunctional sugar-binding transcriptional regulator/dihydroxyacetone kinase subunit DhaK	NA	NA	NA	NA
WP_135313375.1\|2179840_2180545_-	dihydroxyacetone kinase subunit L	NA	NA	NA	NA
WP_135313376.1\|2180591_2182343_-	dihydroxyacetone kinase subunit L	NA	NA	NA	NA
WP_135313377.1\|2182360_2183119_-	D-threitol dehydrogenase	Q06VL0	Trichoplusia_ni_ascovirus	8.5e-10	32.0
WP_135313378.1\|2183236_2184229_-	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_135313379.1\|2184290_2185334_-	ABC transporter permease	NA	NA	NA	NA
WP_135313380.1\|2185383_2186865_-	sugar ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	7.0e-08	22.2
WP_135312192.1\|2187320_2188895_-	gamma-glutamyltransferase	NA	NA	NA	NA
WP_135314433.1\|2189328_2190741_-	cytochrome P450	A0A2I2L481	Orpheovirus	8.1e-30	25.1
WP_135313381.1\|2190979_2191525_-	YaeQ family protein	NA	NA	NA	NA
WP_135313382.1\|2191615_2192350_-	amino acid ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.6e-11	29.5
WP_135313383.1\|2193061_2193310_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_135313384.1\|2193356_2194868_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_135313385.1\|2194872_2195829_-	acetamidase/formamidase family protein	NA	NA	NA	NA
WP_135313386.1\|2196342_2198028_-	chloride channel protein	NA	NA	NA	NA
WP_135313387.1\|2198209_2198965_+	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
WP_135313388.1\|2199073_2200057_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_135313389.1\|2200191_2201034_-	hydratase	NA	NA	NA	NA
WP_135313390.1\|2201232_2202168_-	hypothetical protein	NA	NA	NA	NA
WP_135313391.1\|2203353_2204313_-	aldo/keto reductase	NA	NA	NA	NA
WP_135313392.1\|2204883_2205546_+	hypothetical protein	NA	NA	NA	NA
WP_135313393.1\|2205957_2206143_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_135313394.1\|2206215_2207094_+	hypothetical protein	A0A1X9HW69	Ruegeria_phage	2.0e-23	47.6
WP_135313395.1\|2207903_2208356_+	DUF2924 domain-containing protein	K4I3X1	Acidithiobacillus_phage	4.0e-23	44.4
WP_135313396.1\|2208352_2209663_+	recombinase family protein	K4ICM1	Acidithiobacillus_phage	2.1e-120	53.3
WP_135313397.1\|2209707_2210073_+	hypothetical protein	K4HZX2	Acidithiobacillus_phage	8.0e-14	39.1
WP_135313398.1\|2210229_2210538_+	hypothetical protein	NA	NA	NA	NA
WP_135313399.1\|2210743_2211847_-	zinc-binding dehydrogenase	NA	NA	NA	NA
WP_135313400.1\|2212116_2212794_+	UPF0149 family protein	NA	NA	NA	NA
WP_135313401.1\|2213129_2213912_+	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_135313402.1\|2213921_2214971_+	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	4.8e-19	30.4
WP_135314434.1\|2214993_2216274_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_135313403.1\|2216301_2217174_+	sugar ABC transporter permease	NA	NA	NA	NA
WP_135313404.1\|2217170_2217971_+	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_135313405.1\|2217981_2218752_+	serine/threonine protein phosphatase	NA	NA	NA	NA
WP_135313406.1\|2218770_2219553_+	inositol monophosphatase	NA	NA	NA	NA
WP_135313407.1\|2220213_2220957_+	HNH endonuclease	NA	NA	NA	NA
WP_135313408.1\|2220953_2221181_+	hypothetical protein	NA	NA	NA	NA
WP_135313409.1\|2221177_2222923_+	DUF2326 domain-containing protein	NA	NA	NA	NA
WP_135313410.1\|2222959_2223205_+	hypothetical protein	NA	NA	NA	NA
WP_139615474.1\|2223849_2227959_-	S8 family serine peptidase	NA	NA	NA	NA
WP_135313412.1\|2228131_2229709_-	hypothetical protein	NA	NA	NA	NA
WP_135313413.1\|2229705_2230344_-	hypothetical protein	NA	NA	NA	NA
WP_135313414.1\|2230354_2231368_-	hypothetical protein	A0A292GJ55	Xanthomonas_phage	1.7e-50	34.8
WP_135314351.1\|2233016_2234082_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_135313415.1\|2234820_2237421_-	hypothetical protein	NA	NA	NA	NA
WP_135314435.1\|2240448_2241515_-\|transposase	IS630 family transposase	NA	NA	NA	NA

DBSCAN-SWA_5

2251948 : 2300997

Acidithiobacillus_phage(23.08%)

plate,tail,transposase,integrase

attL 2239333:2239352|attR 2291894:2291913

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2239333:2239352	attL	NA	NA	NA	NA
WP_135314436.1\|2251948_2253015_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_135313421.1\|2253110_2254317_+\|transposase	IS3 family transposase	A0A1B0Z042	Pseudomonas_phage	6.0e-66	48.2
WP_135313422.1\|2254325_2256023_+	Error-prone DNA polymerase 2	Q8W6C3	Saccharomonospora_phage	1.3e-37	27.6
WP_135313423.1\|2256369_2256594_-	hypothetical protein	NA	NA	NA	NA
WP_135313424.1\|2258171_2258621_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_135313425.1\|2258970_2259411_-\|transposase	transposase	NA	NA	NA	NA
WP_135313426.1\|2259665_2259851_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_135313427.1\|2260261_2260726_+	hypothetical protein	NA	NA	NA	NA
WP_135313428.1\|2260722_2260905_+	hypothetical protein	NA	NA	NA	NA
WP_135313429.1\|2260938_2261391_+	DUF2924 domain-containing protein	K4I3X1	Acidithiobacillus_phage	5.8e-22	44.4
WP_135313430.1\|2261387_2262698_+	recombinase family protein	K4ICM1	Acidithiobacillus_phage	2.1e-120	52.9
WP_135313431.1\|2262694_2263108_+	hypothetical protein	K4HZX2	Acidithiobacillus_phage	1.2e-13	39.1
WP_139615475.1\|2263259_2263571_+	hypothetical protein	NA	NA	NA	NA
WP_135313433.1\|2265089_2267999_+	ATP-binding protein	NA	NA	NA	NA
WP_135313434.1\|2268113_2268446_+	hypothetical protein	NA	NA	NA	NA
WP_135313435.1\|2268403_2271460_+	DUF1156 domain-containing protein	K9MDJ7	Sulfolobus_virus	5.8e-33	23.1
WP_135313436.1\|2271456_2272770_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_135313437.1\|2272810_2276365_+	hypothetical protein	A0A2H4J643	uncultured_Caudovirales_phage	4.7e-26	23.8
WP_135313438.1\|2276887_2278162_+\|integrase	integrase arm-type DNA-binding domain-containing protein	A0A077KET4	Ralstonia_phage	3.6e-77	40.8
WP_135313439.1\|2278158_2279034_+	hypothetical protein	NA	NA	NA	NA
WP_135313440.1\|2279138_2279333_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_135313441.1\|2279529_2280282_+	helix-turn-helix domain-containing protein	R9TH17	Synechococcus_phage	5.3e-12	39.4
WP_135313442.1\|2280271_2280886_+	hypothetical protein	NA	NA	NA	NA
WP_135312179.1\|2280956_2282228_-\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	1.5e-99	48.5
WP_135314437.1\|2282766_2282997_+	hypothetical protein	NA	NA	NA	NA
WP_135313443.1\|2283377_2284203_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_135313444.1\|2284397_2285849_+	RNA polymerase subunit sigma-54	NA	NA	NA	NA
WP_135313445.1\|2286091_2286697_+	DUF4255 domain-containing protein	NA	NA	NA	NA
WP_135313446.1\|2286693_2287347_+	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA
WP_135313447.1\|2287385_2289014_+\|tail	phage tail sheath family protein	E3SL60	Synechococcus_phage	6.3e-10	25.1
WP_135313448.1\|2289026_2289482_+\|tail	phage tail protein	NA	NA	NA	NA
WP_135313449.1\|2289483_2291034_+\|tail	phage tail sheath family protein	A0A060AH07	Cronobacter_phage	5.6e-08	27.5
WP_135313450.1\|2291030_2291528_+\|tail	phage tail protein	NA	NA	NA	NA
WP_135313451.1\|2291524_2291719_+	hypothetical protein	NA	NA	NA	NA
WP_135313452.1\|2291718_2292411_+	LysM domain-containing protein	NA	NA	NA	NA
2291894:2291913	attR	NA	NA	NA	NA
WP_135313453.1\|2292407_2293550_+	phage late control D family protein	NA	NA	NA	NA
WP_135313454.1\|2293546_2294131_+	hypothetical protein	NA	NA	NA	NA
WP_135313455.1\|2294144_2294531_+	hypothetical protein	NA	NA	NA	NA
WP_135314438.1\|2294541_2294955_+	GPW/gp25 family protein	NA	NA	NA	NA
WP_135313456.1\|2294951_2296931_+	hypothetical protein	A0A1J0GW37	Streptomyces_phage	4.3e-05	31.1
WP_135313457.1\|2296927_2298955_+\|plate	putative baseplate assembly protein	NA	NA	NA	NA
WP_135313458.1\|2298951_2300997_+\|tail	phage tail protein	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage