CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP054058	Scandinavium goeteborgense strain CCUG 66741 chromosome, complete genome	3 crisprs	cas3,DEDDh,DinG,csa3	1	4	6	0
NZ_CP054057	Scandinavium goeteborgense strain CCUG 66741 plasmid pSg66741_1, complete sequence	0 crisprs	NA	0	0	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP054058_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP054058_1

674455-674806

Orphan

Consensus_repeat	Method
TGCCCGGCGGCACGTTGTTT	CRT

7 spacers

The CRISPR arrays of NZ_CP054058_1

>merge|NZ_CP054058|1|674455-674806|CRT
TGCCCGGCGGCACGTTGTTTGCACGGGCCTACGAGGATGAGATGTTCTATGCCCGGCGGCACGTGCCTACGAGGACGGGATGTTGTATGCGCGGCGGCACGTTGTTTCCGCGGGCCTACGGGGCCGGGATGTTGTCTGCCCGGCGGCACGTTGTTTGCACGGGCCTATGAGGACGGGGTGTTGTCTGCCCGGCGGCACATTGTTTACACGGGCCTACGGGGCCGGGATGTTGTCTGCCCGGCGGCACATTGTTTACACGGGCCTACGGGGCCGGGATGTTGTCTGCCCGGCGGCACGTTGTTTGCGCGGGCCTACGAGGACGGGATGTTGTCTGCCTGGCGGCACGTTGTAT

>NZ_CP054058|1|1|674455-674806|CRT
TGCCCGGCGGCACGTTGTTT	GCACGGGCCTACGAGGATGAGATGTTCTA
TGCCCGGCGGCACGTGCCTA	CGAGGACGGGATGTTGTA
TGCGCGGCGGCACGTTGTTT	CCGCGGGCCTACGGGGCCGGGATGTTGTC
TGCCCGGCGGCACGTTGTTT	GCACGGGCCTATGAGGACGGGGTGTTGTC
TGCCCGGCGGCACATTGTTT	ACACGGGCCTACGGGGCCGGGATGTTGTC
TGCCCGGCGGCACATTGTTT	ACACGGGCCTACGGGGCCGGGATGTTGTC
TGCCCGGCGGCACGTTGTTT	GCGCGGGCCTACGAGGACGGGATGTTGTC
TGCCTGGCGGCACGTTGTAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP054058.1\|WP_125353308.1\|673713_674358_-\|quinolone-resistance-pentapeptide-repeat-protein-QnrB96	unknown	unknown	gnl\|CDD\|224276
NZ_CP054058.1\|WP_125353320.1\|665499_666660_-\|glutathionylspermidine-synthase-family-protein	unknown	unknown	gnl\|CDD\|367631
NZ_CP054058.1\|WP_125353377.1\|675288_675588_-\|ash-family-protein	unknown	unknown	gnl\|CDD\|371132
NZ_CP054058.1\|WP_125353313.1\|670264_671092_+\|3',5'-cyclic-AMP-phosphodiesterase	unknown	unknown	gnl\|CDD\|182997
NZ_CP054058.1\|WP_097162172.1\|669817_670240_+\|DUF1249-family-protein	unknown	unknown	gnl\|CDD\|182921
NZ_CP054058.1\|WP_125353322.1\|664636_665428_+\|4,5-DOPA-dioxygenase-extradiol	unknown	unknown	gnl\|CDD\|182598
NZ_CP054058.1\|WP_125353295.1\|681680_682340_-\|two-component-system-response-regulator-QseB	unknown	unknown	gnl\|CDD\|182387
NZ_CP054058.1\|WP_125353307.1\|674909_675338_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054058.1\|WP_110510417.1\|679296_679611_-\|antibiotic-biosynthesis-monooxygenase	unknown	unknown	gnl\|CDD\|224278
NZ_CP054058.1\|WP_125353317.1\|667506_668985_-\|outer-membrane-channel-protein-TolC	unknown	unknown	gnl\|CDD\|236529
NZ_CP054058.1\|WP_125353305.1\|675841_676519_+\|type-A-chloramphenicol-O-acetyltransferase	unknown	unknown	gnl\|CDD\|172295
NZ_CP054058.1\|WP_125353310.1\|671694_673590_+\|DNA-topoisomerase-IV-subunit-B	unknown	unknown	gnl\|CDD\|130127
NZ_CP054058.1\|WP_125353293.1\|682491_682902_+\|YgiW/YdeI-family-stress-tolerance-OB-fold-protein	unknown	unknown	gnl\|CDD\|225653
NZ_CP054058.1\|WP_125353318.1\|666665_667334_-\|DUF1190-family-protein	unknown	unknown	gnl\|CDD\|236948
NZ_CP054058.1\|WP_125353297.1\|680330_681680_-\|two-component-system-sensor-histidine-kinase-QseC	unknown	unknown	gnl\|CDD\|182388
NZ_CP054058.1\|WP_125353312.1\|671091_671667_+\|esterase-YqiA	unknown	unknown	gnl\|CDD\|182945
NZ_CP054058.1\|WP_125353303.1\|676546_678475_-\|phosphodiesterase	unknown	unknown	gnl\|CDD\|238923
NZ_CP054058.1\|WP_125353301.1\|678492_678987_-\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|226429
NZ_CP054058.1\|WP_125353299.1\|679644_680226_-\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|225158
NZ_CP054058.1\|WP_125353315.1\|669188_669821_+\|ADP-ribose-diphosphatase	unknown	unknown	gnl\|CDD\|182682

Protein	Function_ID	Function_description	E-value
NZ_CP054058.1\|WP_125353308.1\|673713_674358_-\|quinolone-resistance-pentapeptide-repeat-protein-QnrB96	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	3.75872e-21
NZ_CP054058.1\|WP_125353320.1\|665499_666660_-\|glutathionylspermidine-synthase-family-protein	gnl\|CDD\|367631	pfam03738, GSP_synth, Glutathionylspermidine synthase preATP-grasp. This region contains the Glutathionylspermidine synthase enzymatic activity EC:6.3.1.8. This is the C-terminal region in bi-enzymes. Glutathionylspermidine (GSP) synthetases of Trypanosomatidae and Escherichia coli couple hydrolysis of ATP (to ADP and Pi) with formation of an amide bond between spermidine and the glycine carboxylate of glutathione (gamma-Glu-Cys-Gly). In the pathogenic trypanosomatids, this reaction is the penultimate step in the biosynthesis of the antioxidant metabolite, trypanothione (N1,N8-bis-(glutathionyl)spermidine), and is a target for drug design. This region, the pre-ATP grasp region, probably carries the substrate-binding site.	0
NZ_CP054058.1\|WP_125353297.1\|680330_681680_-\|two-component-system-sensor-histidine-kinase-QseC	gnl\|CDD\|182388	PRK10337, PRK10337, sensor protein QseC; Provisional.	0
NZ_CP054058.1\|WP_125353313.1\|670264_671092_+\|3',5'-cyclic-AMP-phosphodiesterase	gnl\|CDD\|182997	PRK11148, PRK11148, cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional.	0
NZ_CP054058.1\|WP_097162172.1\|669817_670240_+\|DUF1249-family-protein	gnl\|CDD\|182921	PRK11039, PRK11039, DUF1249 family protein.	1.16322e-107
NZ_CP054058.1\|WP_125353322.1\|664636_665428_+\|4,5-DOPA-dioxygenase-extradiol	gnl\|CDD\|182598	PRK10628, PRK10628, LigB family dioxygenase; Provisional.	0
NZ_CP054058.1\|WP_125353295.1\|681680_682340_-\|two-component-system-response-regulator-QseB	gnl\|CDD\|182387	PRK10336, PRK10336, two-component system response regulator QseB.	4.29361e-140
NZ_CP054058.1\|WP_125353377.1\|675288_675588_-\|ash-family-protein	gnl\|CDD\|371132	pfam10554, Phage_ASH, Ash protein family. This family was identified by Iyer and colleagues. It includes the Ash protein from bacteriophage P4.	1.65263e-07
NZ_CP054058.1\|WP_110510417.1\|679296_679611_-\|antibiotic-biosynthesis-monooxygenase	gnl\|CDD\|224278	COG1359, COG1359, Uncharacterized conserved protein [Function unknown].	7.74964e-21
NZ_CP054058.1\|WP_125353317.1\|667506_668985_-\|outer-membrane-channel-protein-TolC	gnl\|CDD\|236529	PRK09465, tolC, outer membrane channel protein; Reviewed.	0
NZ_CP054058.1\|WP_125353305.1\|675841_676519_+\|type-A-chloramphenicol-O-acetyltransferase	gnl\|CDD\|172295	PRK13757, PRK13757, type A chloramphenicol O-acetyltransferase.	1.91791e-140
NZ_CP054058.1\|WP_125353310.1\|671694_673590_+\|DNA-topoisomerase-IV-subunit-B	gnl\|CDD\|130127	TIGR01055, DNA_topoisomerase_4_subunit_B, DNA topoisomerase IV, B subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason. This protein is active as an alpha(2)beta(2) heterotetramer. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP054058.1\|WP_125353293.1\|682491_682902_+\|YgiW/YdeI-family-stress-tolerance-OB-fold-protein	gnl\|CDD\|225653	COG3111, COG3111, Periplasmic protein with OB-fold [Function unknown].	1.02273e-54
NZ_CP054058.1\|WP_125353318.1\|666665_667334_-\|DUF1190-family-protein	gnl\|CDD\|236948	PRK11653, PRK11653, DUF1190 family protein.	1.17219e-128
NZ_CP054058.1\|WP_125353312.1\|671091_671667_+\|esterase-YqiA	gnl\|CDD\|182945	PRK11071, PRK11071, esterase YqiA; Provisional.	6.964e-146
NZ_CP054058.1\|WP_125353303.1\|676546_678475_-\|phosphodiesterase	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	9.46295e-107
NZ_CP054058.1\|WP_125353301.1\|678492_678987_-\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|226429	COG3915, COG3915, Uncharacterized protein conserved in bacteria [Function unknown].	2.22798e-54
NZ_CP054058.1\|WP_125353299.1\|679644_680226_-\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|225158	COG2249, MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only].	1.97284e-57
NZ_CP054058.1\|WP_125353315.1\|669188_669821_+\|ADP-ribose-diphosphatase	gnl\|CDD\|182682	PRK10729, nudF, ADP-ribose pyrophosphatase NudF; Provisional.	4.6112e-150

>NZ_CP054058.1|WP_125353308.1|673713_674358_-|quinolone-resistance-pentapeptide-repeat-protein-QnrB96
MTLALTAEKIERNRFTGLKVENSTFHHCDFSGADLTGTEFIGCQFYDRENQKGCNFSRAILKDAIFKNCDLSMADFRNASALGIEIRGCRAQGADFRGTSFMNMITTRTWFCSAYITNTNLSYANFSKAVLEKCELWENRWMGTQVLGATFSGSDLSGGEFSSFDWRAANVTHCDLTNSELGDLDVRGVDLQGVKLDSYQVSLIMERLGVAIIG
>NZ_CP054058.1|WP_125353310.1|671694_673590_+|DNA-topoisomerase-IV-subunit-B
MTQSSYNADAIEVLTGLEPVRRRPGMYTDTTRPNHLGQEVIDNSVDEALAGHAKRVEVILHADQSLEVIDDGRGMPVDIHPEEGVPAIELIFCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQIYTMAFENGEKVEDLHVTGTVGKRNTGTSVHFWPDESFFDSPRFSVSRLSHLLKAKAVLCPGVEIVFKDKVNNSEQTWCYADGLNDYLCEAVNGLPLLPEKPFVGSFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFSLWLNQNVQAAEMLAEMAVSSAQRRLRAAKKVVRKKLTSGPALPGKLADCTAQDLSRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRHVVKAGHVYVAMPPLYRIDLGKEVYYALDEQEKEGVLDQLKRKKGKPNVQRFKGLGEMNPLQLRETTLDPNTRRLVQLYIDDESEQKTDAMMDMLLAKKRSEDRRNWLQEKGDMADLEA
>NZ_CP054058.1|WP_125353312.1|671091_671667_+|esterase-YqiA
MSTLLYLHGFNSSPRSAKATAMKSWLAENHPDIEMVIPQLPAFPAEAAELLEKHVLQHGGEPLGIVGSSLGGYYGTWLSQCFMLPAVVVNPAVRPFELLSGYLGHNENPYTGEQYVLESRHIYDLKVMQIDPLEAPDLLWLLQQTGDEVLDYRQAVDYYTSCRQTVEEGGNHAFIGFEDHFTQIIDFLGLR
>NZ_CP054058.1|WP_125353313.1|670264_671092_+|3',5'-cyclic-AMP-phosphodiesterase
MESLLNLSLAGEARVRVLQITDTHLFAEKHETLLGVNTWDSYQAVLAAIRASQRECDLVVATGDLAQDHSSAAYQHFAEGIAGFDAPCVWLPGNHDFQPAMYSALQDAGISPVKRVFAGDHWQVLMLDSQVFGVPHGELSEFQLEWLEQRLTETPERFTLLLLHHHPLPAGCSWLDQHSLRNAGALDRVLMRFPRVKNLLCGHIHQEMDVDWNGRRMMATPSTCVQFKPHCANFTLDTIAPGWRWLELHADGRLTTDVCRLDGAEFRPDTASEGY
>NZ_CP054058.1|WP_097162172.1|669817_670240_+|DUF1249-family-protein
MKRYTPDFPEMMRLCETNFAQLRRLLPQTDAPGETVSYQVANAQYRLTISESTRYTTLVEIEQTVPAVSYWSLPSMTVRLYHDAMVAEVCSSQQIFRFKARYDYPNKKLHQRDEKHQINQFLADWLRYCLAHGAMAIPVC
>NZ_CP054058.1|WP_125353315.1|669188_669821_+|ADP-ribose-diphosphatase
MTTKNQSVVTYAKNDVEIIARETLYSGFFSLDLYRFRHRLFNGEMSGEVRREIFERGHAAVLLPFDPVRDEVVLVEQIRIAAFDTSETPWLMEMVAGMIEEGESPEDVARREAVEEAGLDVKRVKPMLSYLASPGGTSERLSILVGEVDASTAQGIHGLADEHEDIRVHVVSREQAYQWVEEGKIDNAASVIALQWLQLHYQALRNEWTK
>NZ_CP054058.1|WP_125353317.1|667506_668985_-|outer-membrane-channel-protein-TolC
MKKLLPILIGLSLTGFSAVSHAENLLQVYQQARLSNPDLRKSAADRDAAFEKINEARSPLLPQLGLGADYTYTNGFRDNNGIDSNETSAALTLTQTIFDMSKWRALTLQEKSAGIQDVTYQTDQQTLILNTATAYFNVLSAIDSLSFTEANKQAVYRQLDQTTQRFNVGLVAITDVQNARSQYDTVLANEVTARNNLDNAVEQLRQVTGNYYPELSSLNVSTLKMDKPQPVNALLKEAEGRNLALLQARLSQDLAREQIRYAETGHMPTVGLTASTGVSDTSYDGSNATSSQYTDRNIGQNQIGLNFNLPLYSGGSVTSQVKQAQYNFVGASEQLESAHRNVVQTVRSSFNNINASISSINAYKQAVVSAQSSLDAMEAGYQVGTRTIVDVLDATTTLYNAKQQLSSARYSYLINQLNVKSALGTLNENDLLALNGTLGKAVSTSPEAVAPENAQQDANADGYNGASAAPAAQPAAQRTNTTSSNSSNPFKN
>NZ_CP054058.1|WP_125353318.1|666665_667334_-|DUF1190-family-protein
MKRTKTINHASFRKNWGARHMTPVALAITAVFMLAGCEKTDETVSMYQNADDCSSANPGKSAECTASYNNALKEAERTAPKYTSREDCIAEFGEGQCQQAPAQAGMAPEGQQAQAQSSGSFWMPLMAGYMMGRMMSGSGFQQQPLFSSKNPKSPAYGQYTDASGKGYGAAQSGRSMNVPKTAMAPKPATTNTVTRGGFGESVAKQSTMQRSASGTSSRSMGG
>NZ_CP054058.1|WP_125353320.1|665499_666660_-|glutathionylspermidine-synthase-family-protein
MERVSIVERPDWREKATEYGFNFHTLYGEPYWCEDAYYKLTLEQVEKLEDVTAELHQMCLKVVERVVASDELLAKFRIPKHTWNFVRQAWQTQQPSLYSRLDLAWNGKGEPKLLENNADTPTSLYEAAFFQWIWLEDQQNAGNLPAGSDQFNSLQEKLIERFAELREQHGFGLLHFACCRDTTEDRGTVQYLQDCANEGGVASEFLYIEDIGLGERGQFTDTQDQVIGNLFKLYPWEFMLREIFSTKLEDAGVRWLEPAWKSIISNKALLPMLWEMFPDHPNLLPAYFAEDSYPPMDKYVIKPIFSREGANVSIVENGNVVEAVEGPYGEEGMIVQQFYELPKFGDSYTLIGSWLINDQPAGIGIREDRALITQDLSRFYPHIFVE
>NZ_CP054058.1|WP_125353322.1|664636_665428_+|4,5-DOPA-dioxygenase-extradiol
MSSSRMPALFLGHGSPMNVLEDNVYTRAWQHLGETLPRPKAIVAISAHWFTRGTGVTAMEAPKTIHDFGGFPQALYDTHYPAPGSPELAQRLVELLAPVPVALDKEAWGFDHGSWGVLIKMYPDADIPMVQLSIDSTKPPAWHMEKGRKLAALREEGIMLVASGNVVHNLRTARWHGENTPYPWATSFNEFVKDNLSWQGPTEEHPLVNYLDHEGGSLSNPTADHYLPLLYVLGAWDGKEPMTLPTDGIEMGSLSMLSVQIGR
>NZ_CP054058.1|WP_125353307.1|674909_675338_-|hypothetical-protein
MATILNTECDLLTLPFSAATDFTDLADFCDRFAETLIDCSDPTYKMALLGRMGACLALLRPTLDEPIPPHLIDRFTVETLPDPQPFFEPDAHALCEYCQTLTQLLCEQSLLSETEKSLKGLLCELMWMFAADLKAPRWSASH
>NZ_CP054058.1|WP_125353377.1|675288_675588_-|ash-family-protein
MASAKSGAGIGLLVYKPYWRHTTRFASFLCCSLCCTSMVGRAGASQDAPVSSKAGKTNSVWFHHPQDWSLRWWFKSSLTGGCPYGDNPQYRMRFTDTSL
>NZ_CP054058.1|WP_125353305.1|675841_676519_+|type-A-chloramphenicol-O-acetyltransferase
MEKTTLEYTPVDLSRWARKEHFEVFQSFAQSTFNQTVLLDITALLKHIKEVGWKFYPTIIFLLSKIVNSHAEFRMAMKNNELVIWNEVHPNYTIFHNETETFSALWSHYDGNIHHFQSVYSEDVARYGNNLSYWPKAESRENIFFISAIPWVSFTSFNVNVANMQNFFAPMFTLGKYYKQDGKILLPLAVQVHHSVCDGFHVARLINELQEMSDNIRHLSEDLNT
>NZ_CP054058.1|WP_125353303.1|676546_678475_-|phosphodiesterase
MNRILAGIIFFLFISTAYISFLVHERQQELQKLTHYAASWSAAQMVSEYYRFESLLGLYTIDQTMSLDDVRMRLDIMLSQSDLMKEGDLRNYIESNKSHLAVAQQLEKTLEYLDIHLEKMNRSELQAYLKKMQMLDAQLGRLSSSALDKDINSINDANLKIKTLYYIYSATSLLLIIMSAILGVLIFYQNRNILKAHLQVKSLANALQDSKEKLQLQNAKLEYDVYHDSLTEMNNRHFFWGNLNETIDTAVKSNVPVNVMLFDLDRFKEVNDTYGHDVGDMLLRQISQRLISMGLMPDTLYRLGGDEFAFLSSGLTESSAVSRAQNICDAINQPYTIYNTIINITTSVGIVISDTERRSDYLYKFADLALYEAKKEGAGKIKVFRQWMLDKLQESRTLEHDMAQALVNKEFVVYYQPIVDSFTQEIYSYEALIRWIHPLKGLLSPDNFIPVAEKTGMINEMGKSVLEMACREAASWVIPAKISVNVSPVQLSSKAFAGIVLSILNETGLPAERLELEVTESSLFTESNTPLNTLNRLRALGVKLSIDDFGTGYSSLSRLSRLAFDKIKIDKSFVQSISTQEDALNIIRLITGMAKSLNMKAVAEGVETQEQLESLQLLGCDFTQGYLFGKPQPYIDERIRYG
>NZ_CP054058.1|WP_125353301.1|678492_678987_-|molybdopterin-dependent-oxidoreductase
MRLIVMLLSFVLSTQVWAGEFSRPTGKVLLTLSGNIENTNEAGKAVFDLASLEKLGMVSFQTTSPWYDGRTTFTGIPLQKLMDYVGAKGSVVKVTALNDYTTEIPLNDFKKFNVILALKINGEYMRIRDKGPLFVVYPYDSIPELNNQIYYSRSAWQVSRMNIE
>NZ_CP054058.1|WP_110510417.1|679296_679611_-|antibiotic-biosynthesis-monooxygenase
MLTVIAEIRTRPGQHHRQAVLDEFAKIIPTVLKEEGCHGYAPMVDHAAGVSFQATAPDSIIMVELWETVAHLEAHLQTPHMKAWSAAVKGDVLESHIRILEPAL
>NZ_CP054058.1|WP_125353299.1|679644_680226_-|NAD(P)H-dependent-oxidoreductase
MSNILIINGGKKFGHSNGQLNDTMTEVADGFLRDAGHEVRVVRADSDYDVKAEVQNFLWADTIIWQMPGWWMGAPWTVKKYIDDVFTEGHGSLYASDGRTRSDASKKYGSGGLIQGKTYMLSLTWNAPMEAFTEKDQFFHGVGVDGAYLPFHKANQFLGMDALPTFIANDVIKMPDVPRYVAEYRKHLAEIFA
>NZ_CP054058.1|WP_125353297.1|680330_681680_-|two-component-system-sensor-histidine-kinase-QseC
MRFLRHMSLRLRLTLLFIVLTLVAWSCASFIAWQQTTDKLDKLFDTQQMLFAKRLSVMDFNELHVTSPQLRTKKKIKHGHLDDDALAFAIYTIDGRMVLNDGDNGQDIPYHYRREGFDDGRINNDDDEWRLLWITTADEKYRIVVGQEWDYRQEMALEIITSQLAPWLVALPLMVLLLILLLSRELAPLKKLTRTLRSRTPGSDEQLDTTGVPGEVRPLVDALNQLFNRSHEMIIRERRFTSDAAHELRSPLTALKVQTEVAQMSMDDPQSREKALSQLHFGIDRATRLVEQLLTLSRLDSLAGLDDVEQISLADLLQSAVMDIYHPAHQAGIELRLHSNASDVTRKGQALLLSLLVRNLLDNAVRYSPRGSTVDVTLNAHDFTVRDNGPGISADALARIGERFYRPPGQDEPGSGLGLSIVQRIAALHHMTVVFNNAPEGGFVARVSW
>NZ_CP054058.1|WP_125353295.1|681680_682340_-|two-component-system-response-regulator-QseB
MRILLVEDDKLIGDGLKAGLVKMGFTLDWFTRGEDGKAALFTAPYDAVILDLTLPGIDGLDILRGWRAEGRKEPVLILTARDALAQRVEGLRAGADDYLCKPFALIEVAARLEALIRRVHGQASNALCHGAVTLNPDSLTAFLNDEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYNWDDDVSSNAVEVHVHHLRRKLGTPFIRTVHGIGYTLGEQ
>NZ_CP054058.1|WP_125353293.1|682491_682902_+|YgiW/YdeI-family-stress-tolerance-OB-fold-protein
MKKTLAVAAIVALMSAPVFAANTQGGFSGPGAVPTAAQTSQNGGFIGPNGSVTTVEKAKSMRDDAWVTLRGNIVERISDDLYTFKDATGTMNVDIDHKRWNGVTITPQDVVEIQGEVDKDWNSVEIDVKQVNKVSK

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Crispr_ID: NZ_CP054058_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP054058_2

828589-828733

Orphan

Consensus_repeat	Method
CCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGACCGCACAAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP054058_2

>merge|NZ_CP054058|2|828589-828733|CRISPRCasFinder
CCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGACCGCACAAGGTAAAAGTAAAACCGTCTCATAATGAGACGGTTTTTAGTGTTTGCACCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGACCGCACAAGG

>NZ_CP054058|2|1|828589-828733|CRISPRCasFinder
CCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGACCGCACAAGG	TAAAAGTAAAACCGTCTCATAATGAGACGGTTTTTAGTGTTTGCA
CCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGACCGCACAAGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP054058.1\|WP_125354912.1\|823327_823780_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|173926
NZ_CP054058.1\|WP_125354918.1\|831054_831741_-\|DNA-mismatch-repair-endonuclease-MutH	unknown	unknown	gnl\|CDD\|179923
NZ_CP054058.1\|WP_125354907.1\|816051_816999_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|236819
NZ_CP054058.1\|WP_125354910.1\|819685_821020_+\|PTS-sugar-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|224372
NZ_CP054058.1\|WP_110511456.1\|835398_836274_+\|prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|234599
NZ_CP054058.1\|WP_125354909.1\|818351_819386_-\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380494
NZ_CP054058.1\|WP_125354920.1\|837238_837709_+\|prepilin-peptidase-dependent-protein	unknown	unknown	gnl\|CDD\|236704
NZ_CP054058.1\|WP_125354911.1\|821027_822455_+\|glycoside-hydrolase-family-1-protein	unknown	unknown	gnl\|CDD\|225343
NZ_CP054058.1\|WP_125354916.1\|828734_829775_-\|NADP(H)-dependent-aldo-keto-reductase	unknown	unknown	gnl\|CDD\|236727
NZ_CP054058.1\|WP_125354919.1\|832971_835218_+\|phosphoenolpyruvate--protein-phosphotransferase	unknown	unknown	gnl\|CDD\|182937
NZ_CP054058.1\|WP_174081223.1\|825204_827364_+\|bifunctional-acyl-ACP--phospholipid-O-acyltransferase/long-chain-fatty-acid--ACP-ligase	unknown	unknown	gnl\|CDD\|181207
NZ_CP054058.1\|WP_110511455.1\|836280_837075_+\|thymidylate-synthase	unknown	unknown	gnl\|CDD\|234984
NZ_CP054058.1\|WP_125354908.1\|817119_818382_+\|diaminopimelate-decarboxylase	unknown	unknown	gnl\|CDD\|236867
NZ_CP054058.1\|WP_110511458.1\|832425_832959_+\|RNA-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|234820
NZ_CP054058.1\|WP_125354913.1\|823767_824784_-\|HTH-type-transcriptional-regulator-GalR	unknown	unknown	gnl\|CDD\|182681
NZ_CP054058.1\|WP_125354921.1\|837699_838257_+\|prepilin-peptidase-dependent-protein	unknown	unknown	gnl\|CDD\|236714
NZ_CP054058.1\|WP_125354915.1\|827356_828565_+\|lysophospholipid-transporter-LplT	unknown	unknown	gnl\|CDD\|236879
NZ_CP054058.1\|WP_110511503.1\|822557_823331_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182318
NZ_CP054058.1\|WP_125354929.1\|829929_830148_-\|YgdI/YgdR-family-lipoprotein	unknown	unknown	gnl\|CDD\|380215
NZ_CP054058.1\|WP_125354917.1\|830275_830986_-\|TerC-family-protein	unknown	unknown	gnl\|CDD\|223930

Protein	Function_ID	Function_description	E-value
NZ_CP054058.1\|WP_125354912.1\|823327_823780_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|173926	cd04301, NAT_SF, N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransferase, Myristoyl-CoA: protein N-myristoyltransferase, and Acyl-homoserinelactone synthase which have a similar catalytic mechanism but differ in types of acyl groups transferred. Leucyl/phenylalanyl-tRNA-protein transferase and FemXAB nonribosomal peptidyltransferases which catalyze similar peptidyltransferase reactions are also included.	1.80644e-09
NZ_CP054058.1\|WP_125354918.1\|831054_831741_-\|DNA-mismatch-repair-endonuclease-MutH	gnl\|CDD\|179923	PRK05070, PRK05070, DNA mismatch repair protein; Provisional.	3.14526e-166
NZ_CP054058.1\|WP_125354907.1\|816051_816999_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|236819	PRK11013, PRK11013, DNA-binding transcriptional regulator LysR; Provisional.	0
NZ_CP054058.1\|WP_125354910.1\|819685_821020_+\|PTS-sugar-transporter-subunit-IIC	gnl\|CDD\|224372	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism].	6.03849e-126
NZ_CP054058.1\|WP_110511456.1\|835398_836274_+\|prolipoprotein-diacylglyceryl-transferase	gnl\|CDD\|234599	PRK00052, PRK00052, prolipoprotein diacylglyceryl transferase; Reviewed.	1.08033e-113
NZ_CP054058.1\|WP_125354909.1\|818351_819386_-\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380494	cd06270, PBP1_GalS-like, ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type 1 periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar binding of ABC-type transport systems.	1.19218e-127
NZ_CP054058.1\|WP_125354920.1\|837238_837709_+\|prepilin-peptidase-dependent-protein	gnl\|CDD\|236704	PRK10506, PRK10506, prepilin peptidase-dependent protein.	3.06331e-72
NZ_CP054058.1\|WP_125354911.1\|821027_822455_+\|glycoside-hydrolase-family-1-protein	gnl\|CDD\|225343	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism].	2.6846e-146
NZ_CP054058.1\|WP_125354916.1\|828734_829775_-\|NADP(H)-dependent-aldo-keto-reductase	gnl\|CDD\|236727	PRK10625, tas, putative aldo-keto reductase; Provisional.	0
NZ_CP054058.1\|WP_125354919.1\|832971_835218_+\|phosphoenolpyruvate--protein-phosphotransferase	gnl\|CDD\|182937	PRK11061, PRK11061, phosphoenolpyruvate--protein phosphotransferase.	0
NZ_CP054058.1\|WP_174081223.1\|825204_827364_+\|bifunctional-acyl-ACP--phospholipid-O-acyltransferase/long-chain-fatty-acid--ACP-ligase	gnl\|CDD\|181207	PRK08043, PRK08043, bifunctional acyl-ACP--phospholipid O-acyltransferase/long-chain-fatty-acid--ACP ligase.	0
NZ_CP054058.1\|WP_110511455.1\|836280_837075_+\|thymidylate-synthase	gnl\|CDD\|234984	PRK01827, thyA, thymidylate synthase; Reviewed.	0
NZ_CP054058.1\|WP_125354908.1\|817119_818382_+\|diaminopimelate-decarboxylase	gnl\|CDD\|236867	PRK11165, PRK11165, diaminopimelate decarboxylase; Provisional.	0
NZ_CP054058.1\|WP_110511458.1\|832425_832959_+\|RNA-pyrophosphohydrolase	gnl\|CDD\|234820	PRK00714, PRK00714, RNA pyrophosphohydrolase; Reviewed.	1.78726e-106
NZ_CP054058.1\|WP_125354913.1\|823767_824784_-\|HTH-type-transcriptional-regulator-GalR	gnl\|CDD\|182681	PRK10727, PRK10727, HTH-type transcriptional regulator GalR.	0
NZ_CP054058.1\|WP_125354921.1\|837699_838257_+\|prepilin-peptidase-dependent-protein	gnl\|CDD\|236714	PRK10557, PRK10557, prepilin peptidase-dependent protein.	1.17237e-89
NZ_CP054058.1\|WP_125354915.1\|827356_828565_+\|lysophospholipid-transporter-LplT	gnl\|CDD\|236879	PRK11195, PRK11195, lysophospholipid transporter LplT; Provisional.	0
NZ_CP054058.1\|WP_110511503.1\|822557_823331_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|182318	PRK10225, PRK10225, Uxu operon transcriptional regulator.	4.47213e-77
NZ_CP054058.1\|WP_125354929.1\|829929_830148_-\|YgdI/YgdR-family-lipoprotein	gnl\|CDD\|380215	NF033216, lipo_YgdI_YgdR, YgdI/YgdR family lipoprotein. Members of this family are exclusively lipoproteins of small size, including YgdI and YgdR from E. coli K-12.	5.06856e-34
NZ_CP054058.1\|WP_125354917.1\|830275_830986_-\|TerC-family-protein	gnl\|CDD\|223930	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism].	3.0978e-78

>NZ_CP054058.1|WP_125354915.1|827356_828565_+|lysophospholipid-transporter-LplT
MSESVHTNTSLRSKGMMAVLCAQFLSAFGDNALLFAVLALMKEQFYPDWSQPVLQMVFVGAYILFAPFVGQFADSFPKGRVMMVANGMKLIGAAAIYMGVNPFIGYTLVGVGAAAYSPAKYGILGELTTGDKLVKANGMMESSTIAAILLGSVAGGVLADWHVLAALGVCALVYAGAVVANLFITRLPAARSGQSWRFNAMTGSFFSACKTLWFSRETRFSLVGTSLFWGAGVTLRFLLVLWVPAALGITDNATPTYLNAMVAVGIVVGAGAAAKLVTLETVARCMPAGVLIGVAVVIFALQHALLPAYVLLLLLGICGGFFVVPLNALLQERGKHTVGAGNAIAVQNLGENSAMLIMLGLYSLAVMVGIPVVGVGIGFGTLFAVAILVLWVWGRGKSKTVS
>NZ_CP054058.1|WP_174081223.1|825204_827364_+|bifunctional-acyl-ACP--phospholipid-O-acyltransferase/long-chain-fatty-acid--ACP-ligase
MLLGFFRFLFRVMFRVKVTGNAAALRQPKVLITPNHVSFIDGILLALFLPVRPVFAVYSSISQKWFMRWLAPLIDFVPLDPTKPMSIKHLVRLVEQGRPVVIFPEGRISITGSLMKIYDGAAFVAAKSQAVVVPIRIEGAELTFASRLKGLVKRRFFPQIQLHILPPTSLPMPDAPRARDRRKIAGEMLHQIMMEARMAVRPRETLYEALLSAQHRYGDRKPCIEDINFQPDNYRKLLTKTLFVARILEKYSAKDEKIGLMLPNAGISAAVIFGAIARGRIPAMMNYTAGIKGLSSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVRWVFLEDLKGDVKLTDKLWIFGHLLMPHLAQVKQQPEDAAIVLFTSGSEGNPKGVVHSHKSILANVEQIKTIADFTARDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGHYARFANPYDFHKVRYVVAGAEKLQDSTRQIWQDKFGLRILEGYGVTECAPVVSINVPMAAKPGTVGRILPGMDARLLAVPGIEEGGRLQLKGPNIMNGYLRVENPGVLEQPTAENPNGELETGWYDTGDIVLFDEQGFVKIQGRAKRFAKIAGEMVSLEMVEQLALAVSPDKLHATVIKQDASKGEALVLFTTDAELTRDKLQQQARASGIPELAVPRDIRCLKQLPLLGSGKPDFVALKEQVDQVEKPNE
>NZ_CP054058.1|WP_125354913.1|823767_824784_-|HTH-type-transcriptional-regulator-GalR
MATIKDVARMAGVSVATVSRVINNSPKASEASRQAVFSAMETLSYHPNANARALAQQSTETVGLVVGDVSDPFFGAMVKAVEQVAYHTGNFLLIGNGYHNEKKERQAIEQLIRHRCAALVVHAKVLPDEELIGLMNQIPGMVLINRIVAGFEERCVALDDRYGAWLATRHLIQQGHTRIGYLCSNHAISDAEDRLQGYYDALKESGLPCNERLVTFAEPDESGGEQAMTELLGRGKNFTAVACYNDSMAAGAMGVLNDNGIDVPGEISLIGFDDVLISRYVRPRLTTVRYPIVTMATQAAELALALADKRPLPEITHLFSPTLVRRHSVISPVETQSS
>NZ_CP054058.1|WP_125354912.1|823327_823780_+|GNAT-family-N-acetyltransferase
MKIQPLHDVPQHSRQVIDWLWQAFGGVAMPREFFASIIEHSQTPDALPFTFVLTDGDTLLATVGLWRCDLISRQDLFPWMAALYVDESVRGQGIAGRLQAHVIEYARGKGYSQLHLYSACRDFYERFGWQYIGDGIEYPATTVHLYRYEL
>NZ_CP054058.1|WP_110511503.1|822557_823331_+|GntR-family-transcriptional-regulator
MEKAVVPPEKKPYQEIGEDLRAQIMQGLYPVGSRLPPERNIAEKYGVSRTIVREALLMLELQGTVDIRQGSGVYVMRIPQENDSEEEQMLNSDVGPFEILQARQLLESNIAAFAAKMATRADIDNLKRIIEQEQRAIAANDTTQDNSKMFHLVLAGATQNQMLLTTVEKIWLQMDSSPLWQQFNAHIASRAYRLKWLGDRQTILAALRRRDVMGAWQATWQHLENVKNSLLELSDEDAPDFDGYLFESVPIFQGKLV
>NZ_CP054058.1|WP_125354911.1|821027_822455_+|glycoside-hydrolase-family-1-protein
MSQKTITIPQDFILGAAASAWQTEGWSGKKEGQDSWPDLWYKNDRHVWHDGYGPAVATDFINRFREDVALMKQAGLTHYRTSINWSRFLTDYENVTVDEEYAAYYDALFDELNANGITPMICLEHYELPGYLLETYGGWASKKVVDLFVGYVEKVFERYHHKVTRWFTFNEPIVVQTRVYLDALRWPYEQNTGTWMQWNHHKVLATARVVKLFREKGYRGSVGCILNPEVTYPRSRAVHDVRAAERYDLFYNRVFLDPMVKGEYPPELITLLEQHHVAWDHTEEELEIICENTVDELGINLYYPHRVKAPSRAWHPETPFHPAYYYEPFELPGRRMNKSRGWEIYPQIVYDMAMRIKNEYRNIPWFVAESGMGIENEGQFRNSDGVIEDDYRINFISEHLWQTLRAKQDGANCHGYMLWAFTDNVSPMNAFKNRYGLIEIDLANNRARRAKKSASWFRRLRDTRMLTLNVDDELK
>NZ_CP054058.1|WP_125354910.1|819685_821020_+|PTS-sugar-transporter-subunit-IIC
MAFQEKLIDSLGSFATKFNSYRYIMAIKSSFITLMPVIIVGAFSVLISNMVLDPKNGLASFQSLSFLAALKPITGAINYATLNFLNIGAVFLIGIELGRINGIKTLFPGLLAVICFICVTPTTVEMMVDGQMHQVKDVLLRQFSDTRSLFLGMFIAILSVEVYCWLEKRPGLKIKMPDTVPPNVSASFSALIPAIITTTVIATFGFVFHQLTGMYLYDAVYQVVQQPLERVMQSLPGILLLMFVAQLFWVIGIHGNQMIKPIREPLLLGAITVNMSAFEQGKEVPNIITMPFWDVYMSIGGSGLTLGLLVAVMIASKRKEMKEIAKLSIGPGLFNINEPVIFGMPIMLNPILAIPFIITPLVTGSIGYFATAAGFAGKAVVMVPWTTPPLINAWLSTAGSMGAVVTQLVCIVTSIIIYLPFVKIASRRAEQAQLQAQQQATENA
>NZ_CP054058.1|WP_125354909.1|818351_819386_-|LacI-family-DNA-binding-transcriptional-regulator
MATMLDVSLRAGVSKATVSRVLNGTGQVKESTRKQVYKAMEDLGYRPNFLARSLANRTSNSIGLVVSTFDGFYFGRLLQQASRQTETHGKQLIVTDGHDTPEREEQAVQMLADRQCDAIVLYTRFMSEKAIMKLINSINMPVVVINRDVSQARDRCVFFEQQDAAFQAVEYLISQGHRDIACITVPIHTPTGKARLQGYRSALEKHGIAWDPDKVKYGDSGMTRGYELCQQLLEENATFSALFACNDDMALGASKALHQAGLRIPQDISLFGFDDAPSAKWLEPGLSTVYLPIDNMITTAIDQAIKLANDLPIETLPPFTGKLVLRESVTTGPFYQNSSSASSS
>NZ_CP054058.1|WP_125354908.1|817119_818382_+|diaminopimelate-decarboxylase
MPRPLNTTDTDLNAENLLRLPAEFGCPVWVYDAAIIRQQIAQLSQFDVVRFAQKACSNIHILRLMREQGVKVDSVSLGEIERALAAGYDPETHPDDIVFTADMIDEATLARVAELKIPVNAGSVDMLAQLGEVSPGHRVWLRVNPGFGHGHSQKTNTGGENSKHGIWYSDLPAALEVIQRYQLTLVGIHMHIGSGVDYGHLEQVCGAMVRQVVEFGQDLEAISAGGGLSIPYCYDDETIDTQHYFGLWNAAREQIAKHLGHPVKLEIEPGRFLVAESGVLVAQVRSVKNMGSRHFVLIDAGFNDLMRPSMYGSYHHISALAGDGRDLSQAALVETVVAGPLCESGDVFTQQEGGKVETRELPQVVPGDYLVLHDTGAYGASMSSNYNSRPLLPEVLYDNGSARLIRRRQTIQELLALELF
>NZ_CP054058.1|WP_125354907.1|816051_816999_-|LysR-family-transcriptional-regulator
MPAVNLRHIEIFHAVMTTGNLTEAATMLHTSQPTVSRELARLEKVLGLKLFERNRGRLHPTVQGLRLFEEVQRSWYGLDRILSTAESLREFRQGELSVVCLPVFSQSFLPALLQPFLARYPDVSLQIVPQESPLLEEWLSAQRHDLGLTETLHTPPGTERTPLLSMNEVCVLPAAHPLAEKTVLTPQDFEGQNYISLSRTDSYRQLLDGLFAEHGVHRRMVVETHSAASICAMVRAGVGISVVNPFTALDYAYGGDNSGIAIRRFSVDVPFTVSLIRPLHRPGSALVDAFIAHLQNGVPSLVTPLEETLNRVRKG
>NZ_CP054058.1|WP_125354916.1|828734_829775_-|NADP(H)-dependent-aldo-keto-reductase
MHYHRIPHSSLEISTLGLGTMTFGEQNSEADAHTQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYVGNWLAKHGNREKLVLASKVSGPTRNNDNGIRPNQALDRKNIRDALHNSLTRLQTDYLDLYQVHWPQRATNCFGKLGYEWTESQPVITLLETLEALTEFQRAGKIRYIGVSNETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSYEVALAEVSQFEGVELLAYSCLAFGTLTGKYLNGAQPAGARNTLFSRFTRYSSEQSQKAVAAYVDIAKRHNLDPAQMALAFVRRQPFVASTLLGATTMEQLKTNVESLHLELSEEVLVEIEAVHKVYTYPAP
>NZ_CP054058.1|WP_125354929.1|829929_830148_-|YgdI/YgdR-family-lipoprotein
MKKWAVLISAVGLAFAVSGCSSDYVMATKDGRMILTDGKPEVDDDTGLISYDDQQGNSMQINRDDVSQIIKR
>NZ_CP054058.1|WP_125354917.1|830275_830986_-|TerC-family-protein
MFAWVTDPNAWMALGTLTIMEIVLGIDNIIFLSLVVAKLPTAQRNHARRIGLFAAMMMRLGLLASIAWVVRLTNPLFTLFDHSFSARDLILLAGGLFLIWKASKEIHESIEGEEEGLKTNVHSFFGAIVQIMLLDIIFSLDSVITAVGLSDHLFIMMAAVVIAVGVMMFAARPIGEFVDRHPSVKMLALAFLILVGFTLMLESFSIHVPKGYIYFAMFFSIAVETLNLLRNKKNPL
>NZ_CP054058.1|WP_125354918.1|831054_831741_-|DNA-mismatch-repair-endonuclease-MutH
MSPLSPLRHSPQSEAQLLAQAQQLAGYSLGELAAMANLPIPPDLKRDKGWIGVLLEIWLGASAGSKPEQDFAALGVELKTIPVDRNGRPLETTFVCVAPLTGNSGVTWETSHVRHKLKRVLWIPVEGERAIPLAERHVGTPLLWSPSAEEEHQLRMDWEELMDLIVLGQVERITARHGEVLQLRPKAANSKALTEAVGTHGEPILTLPRGFYLKKNFTAALLAQHFLL
>NZ_CP054058.1|WP_110511458.1|832425_832959_+|RNA-pyrophosphohydrolase
MIDDDGYRPNVGIVICNRQGQVMWARRYGQHSWQFPQGGINPGESAEQAMYRELFEEVGLSRKDVRILASTRNWLRYKLPKRLVRWDTKPVCIGQKQKWFLLQLIGNDADINMQTSSTPEFDGWRWVSYWYPVRQVVSFKRDVYRRVMKEFAGVVLALTESTPKPQNTAPAYRRKRG
>NZ_CP054058.1|WP_125354919.1|832971_835218_+|phosphoenolpyruvate--protein-phosphotransferase
MLTRLREIVEKVASAPRVNEALDILVTDICQAMETEVCSVYLADHDRRCYYLMATRGLKKPRGRTITLAFDEGVVGLVGRLAEPINLADAQKHPSFKYIPSVKEEKYRAFLGVPIIQRRQLLGVLVVQQRELRQFDESEESFLVTLATQMAAILSQSQLTALFGQYRQTRIRALAAASGVAIAQGWMDSTLPLMEQVYEASTLDTALERERLTGALEEAAGEFRRYSKRFAAGAQKETAAIFDLYSHLLSDARLRKELFAEVDKGSVAEWAVKTIIEKFAAQFAALSDGYLKERAGDLRALGQRLLFHLDDSVQGPNAWPERFVLVADELSATTLAEVPQDRLMGVVVRDGAANSHAAIMVRALGIPTVMGADIQPSVLHGRMLVVDGYRGELLVDPEPVLLQEYQRLVTEENELSRIAEDDVDRPAQLKSGERVKVMLNAGLSPEHEEKLGSRIDGIGLYRTEIPFMLQSGFPSEEEQVSQYQGMLQMFNDKPVTLRTLDVGADKQLPYMPISEENPCLGWRGIRITLDQPEIFLVQVRAMLRANAATGNLSILLPMITSIDEVDEAKRLIERAGREVEEMIGYEIPKPRIGVMLEVPSMVFMLPHLTRRVDFISVGTNDLTQYLLAVDRNNTRVANMYDSLHPALLRALSMIAQDAERLDIDLRVCGEMAGDPMCVTILIGLGFRHLSMNGRSVARVKYLLRHIELEDAKNLAQRSLDAQLATEVRHQVAAFMERRGLGGLIRGGR
>NZ_CP054058.1|WP_110511456.1|835398_836274_+|prolipoprotein-diacylglyceryl-transferase
MNSGYLHFPEFDPVIFSIGPVALHWYGLMYLVGFIFAMWLASRRANRPGSGWTKNEVENLLYAGFLGVFLGGRIGYVLFYNMPVFLSDPLYLFRVWDGGMSFHGGLIGVIVVMIVFAKRTKRTFFQVADFIAPLIPFGLGAGRLGNFINGELWGRVDPSFHYTMLFPGSRAEDLALLPSHPEWQSLFDQYGVLPRHASQLYELALEGVVLFIILNLFIRKPRPTGSVSGLFLIGYGLFRIIVEFFRQPDAQFTGEWVQYISMGQILSIPMVLAGIIMMVWAYRHRPQQQVS
>NZ_CP054058.1|WP_110511455.1|836280_837075_+|thymidylate-synthase
MKQYLELMQKVLDEGTPKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELLWFLKGDTNVAYLHENNVSIWDEWADDQGNLGPVYGKQWRAWPTPDGRHIDQITTVIEQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQLYQRSCDVFLGLPFNIASYALLVHMVAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSRETRALPKLVIKRKPASIFDYQFDDFEIEGYDPHPGIKAPVAI
>NZ_CP054058.1|WP_125354920.1|837238_837709_+|prepilin-peptidase-dependent-protein
MKREQGYTLIEMLVAISLVIILSSGGLYGWQRWQQQQRLWQTAGQVRDYLVMLRNDANWHHRDRLLRVERAEQGWCLSALSEETSGCTAQSIFVLRPRWPEVVLSEITPNLGFYGLRSTAWPGHITLKSSTGSWSLIVSGWGRVRLCQGGSDKSCQ
>NZ_CP054058.1|WP_125354921.1|837699_838257_+|prepilin-peptidase-dependent-protein
MPVNQQGFSLIEVLIAMAIGSTLLLATARFLPALQMATLRQTQQQVLEEEIWQRLFAVSSHLQRAGFCRGACSGEAVLIENHCLRVRWDSNLNGVWEETPAANSDVTGFRLNDGALETLRGATECNAKGWEKMTDPDFLVVDGFKVQRHNISGFSPEFEVTLLAHLKGRPTVQVSASHTVTGHNL

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Crispr_ID: NZ_CP054058_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP054058_3

3037423-3037539

Orphan

Consensus_repeat	Method
AAAACGGCAATCTACGGATTGCCGTTTGCATTTACCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP054058_3

>merge|NZ_CP054058|3|3037423-3037539|CRISPRCasFinder
AAAACGGCAATCTACGGATTGCCGTTTGCATTTACCTCGTGCGGTCTGATGCCCTCCCACCGGGAGAGGGAGCAAACACTAAAACGGCAATCTATGGATTGCCGTTTGCATTTACCT

>NZ_CP054058|3|2|3037423-3037539|CRISPRCasFinder
AAAACGGCAATCTACGGATTGCCGTTTGCATTTACCT	CGTGCGGTCTGATGCCCTCCCACCGGGAGAGGGAGCAAACACT
AAAACGGCAATCTATGGATTGCCGTTTGCATTTACCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP054058.1\|WP_125354558.1\|3030924_3032160_+\|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl\|CDD\|182643
NZ_CP054058.1\|WP_110509994.1\|3045005_3046601_-\|ABC-F-family-ATPase	unknown	unknown	gnl\|CDD\|237894
NZ_CP054058.1\|WP_125354554.1\|3034769_3037202_+\|formate-C-acetyltransferase/glycerol-dehydratase-family-glycyl-radical-enzyme	unknown	unknown	gnl\|CDD\|273798
NZ_CP054058.1\|WP_125354551.1\|3039881_3040973_-\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NZ_CP054058.1\|WP_125354549.1\|3042577_3044944_+\|glycoside-hydrolase-family-31-protein	unknown	unknown	gnl\|CDD\|224418
NZ_CP054058.1\|WP_125354553.1\|3037619_3038435_+\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|272905
NZ_CP054058.1\|WP_125354548.1\|3048025_3048853_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|132997
NZ_CP054058.1\|WP_125354552.1\|3038619_3039885_+\|DUF1479-domain-containing-protein	unknown	unknown	gnl\|CDD\|369327
NZ_CP054058.1\|WP_125354557.1\|3032159_3032912_+\|molybdopterin-synthase-adenylyltransferase-MoeB	unknown	unknown	gnl\|CDD\|180204
NZ_CP054058.1\|WP_125354560.1\|3027928_3029785_-\|glutathione-ABC-transporter-ATP-binding-protein-GsiA	unknown	unknown	gnl\|CDD\|182342
NZ_CP054058.1\|WP_125354556.1\|3033068_3033731_-\|fructose-6-phosphate-aldolase	unknown	unknown	gnl\|CDD\|183653
NZ_CP054058.1\|WP_125354555.1\|3033865_3034765_+\|glycyl-radical-enzyme-activating-protein	unknown	unknown	gnl\|CDD\|274163
NZ_CP054058.1\|WP_125354559.1\|3029796_3030735_-\|beta-aspartyl-peptidase	unknown	unknown	gnl\|CDD\|182319
NZ_CP054058.1\|WP_110509995.1\|3048849_3049563_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225099
NZ_CP054058.1\|WP_125354550.1\|3041258_3042560_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340877
NZ_CP054058.1\|WP_125353823.1\|3024426_3025338_-\|glutathione-ABC-transporter-permease-GsiD	unknown	unknown	gnl\|CDD\|185040
NZ_CP054058.1\|WP_125354547.1\|3049574_3050894_-\|PTS-sugar-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|224372
NZ_CP054058.1\|WP_125354563.1\|3046829_3047750_+\|L,D-transpeptidase	unknown	unknown	gnl\|CDD\|182341
NZ_CP054058.1\|WP_125353822.1\|3025338_3026259_-\|glutathione-ABC-transporter-permease-GsiC	unknown	unknown	gnl\|CDD\|185039
NZ_CP054058.1\|WP_125354561.1\|3026370_3027912_-\|glutathione-ABC-transporter-substrate-binding-protein-GsiB	unknown	unknown	gnl\|CDD\|185311

Protein	Function_ID	Function_description	E-value
NZ_CP054058.1\|WP_125354558.1\|3030924_3032160_+\|molybdopterin-molybdotransferase-MoeA	gnl\|CDD\|182643	PRK10680, PRK10680, molybdopterin biosynthesis protein MoeA; Provisional.	0
NZ_CP054058.1\|WP_110509994.1\|3045005_3046601_-\|ABC-F-family-ATPase	gnl\|CDD\|237894	PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional.	0
NZ_CP054058.1\|WP_125354554.1\|3034769_3037202_+\|formate-C-acetyltransferase/glycerol-dehydratase-family-glycyl-radical-enzyme	gnl\|CDD\|273798	TIGR01774, Putative_formate_acetyltransferase_3, glycyl radical enzyme, PFL2/glycerol dehydratase family. This family previously was designated pyruvate formate-lyase, but it now appears that members include the B12-independent glycerol dehydratase. Therefore, the functional definition of the family is being broadened. This family includes the PflF and PflD proteins of E. coli, described as isoforms of pyruvate-formate lyase found in a limited number additional species. PFL catalyzes the reaction pyruvate + CoA -> acetyl-CoA + formate, which is a step in the fermentation of glucose.	0
NZ_CP054058.1\|WP_125354551.1\|3039881_3040973_-\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	5.25515e-59
NZ_CP054058.1\|WP_125354549.1\|3042577_3044944_+\|glycoside-hydrolase-family-31-protein	gnl\|CDD\|224418	COG1501, COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism].	0
NZ_CP054058.1\|WP_125354553.1\|3037619_3038435_+\|HAD-family-hydrolase	gnl\|CDD\|272905	TIGR00099, Uncharacterized_protein_MCAP_0867, Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. This subfamily of sequences falls within the Class-IIB subfamily (TIGR01484) of the Haloacid Dehalogenase superfamily of aspartate-nucleophile hydrolases. The use of the name "Cof" as an identifier here is arbitrary and refers to the E. coli Cof protein. This subfamily is notable for the large number of recent paralogs in many species. Listeria, for instance, has 12, Clostridium, Lactococcus and Streptococcus pneumoniae have 8 each, Enterococcus and Salmonella have 7 each, and Bacillus subtilus, Mycoplasma, Staphylococcus and E. coli have 6 each. This high degree of gene duplication is limited to the gamma proteobacteria and low-GC gram positive lineages. The profusion of genes in this subfamily is not coupled with a high degree of divergence, so it is impossible to determine an accurate phylogeny at the equivalog level. Considering the relationship of this subfamily to the other known members of the HAD-IIB subfamily (TIGR01484), sucrose and trehalose phosphatases and phosphomannomutase, it seems a reasonable hypothesis that these enzymes act on phosphorylated sugars. Possibly the diversification of genes in this subfamily represents the diverse sugars and polysaccharides that various bacteria find in their biological niches. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences. [Unknown function, Enzymes of unknown specificity].	4.35059e-68
NZ_CP054058.1\|WP_125354548.1\|3048025_3048853_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|132997	cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it also includes families GT-43, GT-6, GT-8, GT13 and GT-7; which are evolutionarily related to GT-2 and share structure similarities.	0.00518163
NZ_CP054058.1\|WP_125354552.1\|3038619_3039885_+\|DUF1479-domain-containing-protein	gnl\|CDD\|369327	pfam07350, DUF1479, Protein of unknown function (DUF1479). This family consists of several hypothetical Enterobacterial proteins, of around 420 residues in length. Members of this family are often known as YbiU. The function of this family is unknown.	0
NZ_CP054058.1\|WP_125354557.1\|3032159_3032912_+\|molybdopterin-synthase-adenylyltransferase-MoeB	gnl\|CDD\|180204	PRK05690, PRK05690, molybdopterin biosynthesis protein MoeB; Provisional.	3.55458e-174
NZ_CP054058.1\|WP_125354560.1\|3027928_3029785_-\|glutathione-ABC-transporter-ATP-binding-protein-GsiA	gnl\|CDD\|182342	PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional.	0
NZ_CP054058.1\|WP_125354556.1\|3033068_3033731_-\|fructose-6-phosphate-aldolase	gnl\|CDD\|183653	PRK12653, PRK12653, fructose-6-phosphate aldolase; Reviewed.	2.3592e-139
NZ_CP054058.1\|WP_125354555.1\|3033865_3034765_+\|glycyl-radical-enzyme-activating-protein	gnl\|CDD\|274163	TIGR02494, PFLE_PFLC, glycyl-radical enzyme activating protein. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA), benzylsuccinate synthase (BssD), gycerol dehydratase (DhaB2) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0 to 8 additional cysteines.	3.21589e-141
NZ_CP054058.1\|WP_125354559.1\|3029796_3030735_-\|beta-aspartyl-peptidase	gnl\|CDD\|182319	PRK10226, PRK10226, isoaspartyl peptidase; Provisional.	0
NZ_CP054058.1\|WP_110509995.1\|3048849_3049563_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	2.0201e-61
NZ_CP054058.1\|WP_125354550.1\|3041258_3042560_+\|MFS-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.93735e-75
NZ_CP054058.1\|WP_125353823.1\|3024426_3025338_-\|glutathione-ABC-transporter-permease-GsiD	gnl\|CDD\|185040	PRK15082, PRK15082, glutathione ABC transporter permease GsiD; Provisional.	0
NZ_CP054058.1\|WP_125354547.1\|3049574_3050894_-\|PTS-sugar-transporter-subunit-IIC	gnl\|CDD\|224372	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism].	2.50118e-115
NZ_CP054058.1\|WP_125354563.1\|3046829_3047750_+\|L,D-transpeptidase	gnl\|CDD\|182341	PRK10260, PRK10260, L,D-transpeptidase; Provisional.	0
NZ_CP054058.1\|WP_125353822.1\|3025338_3026259_-\|glutathione-ABC-transporter-permease-GsiC	gnl\|CDD\|185039	PRK15081, PRK15081, glutathione ABC transporter permease GsiC; Provisional.	0
NZ_CP054058.1\|WP_125354561.1\|3026370_3027912_-\|glutathione-ABC-transporter-substrate-binding-protein-GsiB	gnl\|CDD\|185311	PRK15413, PRK15413, glutathione ABC transporter substrate-binding protein GsiB; Provisional.	0

>NZ_CP054058.1|WP_125354554.1|3034769_3037202_+|formate-C-acetyltransferase/glycerol-dehydratase-family-glycyl-radical-enzyme
MTTLKLDHLTDRIQAHKNALVHIVKPPVCTERAQHYTTVYQHNMDKPIAVRRALALAHHLAERTIWIKHDELIIGNQASEVRAAPIFPEYTVSWIEKEIDDLADRPGAGFAVSEENKRVLHEICPWWNGQTVQDRCYGMFTDEQKALLATGIIKAEGNMTSGDAHLAVNFPLLLEKGLDGLREKVAERRSRINLTVLEDLHGEQFLKGIDIVLEAVSLHITRFAELARKMASEEPREARRDELLAMAENCDVIAHEPPKTFWQALQLCYFIQLILQIESNGHSVSFGRMDQYLYPFYRRDVELNHSLDRELAIELLHSCWLKLLEVNKIRSGSHSKASAGSPLYQNVTIGGQKLVNGDAMDAVNPLSYAILESCGRLRSTQPNLSVRYHAGMSSDFLDACVQVIRCGFGMPAFNNDEIVIPEFIKLGVEKEDAYDYAAIGCIETAVGGKWGYRCTGMSFINFARVMLAAMEGGRDATSGEVFLPQAKALSQGNFGGFEEMMSAWDTQIRYYTRKSIEIEYVVDTMLEENVPDILCSALVDDCIERAKSIKEGGAKYDWVSGLQVGIANLGNSLAAVKKLVFEQGAIGQQQLAAALADDFDGLTHEQLRQRLINGAPKYGNDDDTVDELLVRAYQTYIEELKQYHNPRHGRGPIGGDYYAGTSSISANVPFGAATMATPDGRKAHTPLAEGASPASGTDHLGPTAVIGSVGKLPTAAILGGVLLNQKLNPATLDNDSDRQKLMALLRTFFEVHKGWHIQYNIVSRETLLEAKKHPDQYRDLVVRVAGYSAFFTALSPDAQDDIIARTEHTL
>NZ_CP054058.1|WP_125354555.1|3033865_3034765_+|glycyl-radical-enzyme-activating-protein
MIFNIQRYSTHDGPGIRTVVFMKGCSLGCRWCQNPESRARTQDLLFDARLCLDGCDLCQQAVPGVIERALNGLVIHREKLEQSHLDALVECCPTQALTVCGELKSVDDIMATVLRDKPFYDRSGGGLTLSGGEPFMNPALALQLLKISHEQGIHTAVETCLHVPWKYLEPALPYIDLFLADLKHVDADKFMQWTDGSSKRVLDNLKRLAEAGKKMTIRVPLIQGFNADEASIEAITEFAATELQVSDIHFLPYHTLGMNKYSLLGVPYSAPDKPLDAPELLEFAQQTARAKGLTATLRG
>NZ_CP054058.1|WP_125354556.1|3033068_3033731_-|fructose-6-phosphate-aldolase
MELYLDTSDVAAVKKLARIFPLAGVTTNPSIVAAGKKPLESLLPELQEALGGQGRLFAQVMANTAEGMVNDARKLRGIIADIVVKVPVTAEGLAAIKMLKAEGIPTLGTAVYGAAQGMMAALAGAEYVAPYVNRIDAQGGSGIRSVEELQQLLELHAPESKVLAASFKTPRQALDCLLVGCQSITLPLDVAQQFIASPAVDAAIDKFEQDWLAAFGRTEL
>NZ_CP054058.1|WP_125354557.1|3032159_3032912_+|molybdopterin-synthase-adenylyltransferase-MoeB
MSVELSDAEMLRYNRQIVLRGFDFDGQEKLKASRALIVGLGGLGCAAAQYLAAAGVGQMTLLDFDTVSLSNLQRQTLHSDATIDQPKVESARDSLSRINPHVQFTCLDAHLDDAALAEQIAAHDVVLDCTDNVQIRNQLNAGCFQHKTPLVSGAAIRMEGQISVFTYQAGEPCYRCLSRLFGENALTCVEAGVMAPLVGVIGSMQAMEAIKLLAHYGTPAAGKIVMYDAMTCQFREMKLMQFVECEVCGG
>NZ_CP054058.1|WP_125354558.1|3030924_3032160_+|molybdopterin-molybdotransferase-MoeA
MDFNAGLMPLDVALTQMLSRISPLNDTETLPLMQAFGRITAEDVVSPLDVPGFDNSAMDGYAVRLADLADGKPLPLAGKAFAGQPFDGEWPAGTCVRIMTGAPVPTGCDAVVMQEETEQNNHGVRFTARVNAGQNIRRRGEDITAGSAVFPRGTRLTVAELPVLASLGIPQVEVVRKVRVAVFSTGDELKLPGEPLAAGQIYDTNRLAVHLMLEQLGCEVINLGIIPDSQEKLRAAFIAADSQADVVISSGGVSVGEADYTKTILDELGEIAFWKLAIKPGKPFAFGKLKHSWFCGLPGNPVSAALTFYQLVQPLLAKLSGNPESGLSPRLRVQTTTRLKKSPGRLDFQRGVLTRNAEGDLSVATTGHQGSHVFSSFSQGNCFIVLERDRGNVDAGEWVEVEPFNALFGGL
>NZ_CP054058.1|WP_125354559.1|3029796_3030735_-|beta-aspartyl-peptidase
MSQAAIAIHGGAGAITRGNMSPEREQQYVLALSSIVETGQKMLEAGASALDVVTEAVRLLEECPLFNAGTGAVFTADETHELDACVMDGYSLQAGAVAGIKHLRNPVLAARLVLEQSPHVLLIGEGAEKFAVQHGMEKVRNDLFSTPERLSQLRQAQAAGETRLDHSDSPLDEQTKMGTVGAVALDKAGNLAAATSTGGMTNKLPGRVGDSPLPGAGCYANNASVAVSCTGTGEVFMRTLAAYDISALMEYSDLSLQDACERVVMEKLPALGGSGGLIAIDREGNVVMPFNSEGMYRAYAYVGDTPTVGIYR
>NZ_CP054058.1|WP_125354560.1|3027928_3029785_-|glutathione-ABC-transporter-ATP-binding-protein-GsiA
MPHSHEIDPSEVLVVRDLNITFQQERQSVQAVKHLSFSLKRGETLAIVGESGSGKSVTALALMRLLEQSGGEVNSDTLMLRRRNREVIDVPAQSASQMRRVRGADIAMIFQEPMTSLNPVFTVGEQIAESIRLHQGLGRDDALKAAKKMLDQVRIPEAETILARYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIDVLQKEMEMGVIFITHDMGVVADIADRVLVMYRGEAVETGSVEQIFHAPQHPYTQALLAAVPRLGAMRGSALPRSFPLLNTDAIPAEQDTVVPGEPILQVRDLVTRFPLRSGILNRITREVHAVEKVSFDLWPGETLALVGESGSGKSTTGRALLRLVASQSGNITFNGKRIDTLPDSQLQPLRRDIQFIFQDPWASLDPRQTIGYSILEPLRVHNMMPEADAQRRVAWLLERVGLQPEHAWRYPHEFSGGQRQRICIARALALNPKVVIADEAVSALDVSIRAQIINLLLDLQREMGMAYLFISHDMAVVERISHRVAVMYRGQIVEIGPRNAVFENPQHPYTRKLMAAVPVADPTHHRPQRVLLSDEMPGNIYPRGEEIASVPLVQVSPGHFVARDETPSALSRL
>NZ_CP054058.1|WP_125354561.1|3026370_3027912_-|glutathione-ABC-transporter-substrate-binding-protein-GsiB
MTQQNSGKWLLALGVVSALAAAPAFAAKDVVVAVGSNFTTLDPYDANDTLSQAVAKSFYQGLFGLDKDMKMHNVLAESYTVSDDGLVYTLKLRSGVKFQDGTDFNAEAVKINLDRASNPDNHLKRFNLYKDIASTEAVDPQTVKITLKQPFSAFINILAHPATAMISPAAIKKFGKDIGFHPVGTGPYSLETWNQTDFVKVKKFDGYWQKGLPKLDTITWRPVVDNNTRAAMLQTGEAQFAFPIPYEQAPLLEKNSKLELVASPSIMQRYISMNVTQKPFDNPKVREAINYAINRQALVKVAFAGYATPATGVVPPSIAYAQTYKPWPYDPARARELLKEAGFPNGFSTTLWSSHNHSTAQKVLQFTQQQLAQVGIKAQLTAMDAGQRASEVEAKGQKESGVRMFYTGWSASTGEADWALSPLFASQNWPPTLFNTAFYSNPQVDKDLAGALKTNDPKEKAHLYKEAQDTIWKESPWVPLVVEKLVSAHSKNLTGFYIMPDTGFSFDEADLAQ
>NZ_CP054058.1|WP_125353822.1|3025338_3026259_-|glutathione-ABC-transporter-permease-GsiC
MLNYVIKRLFGLIPTLLIVAVLVFLFVHLLPGDPARLIAGPEADAQVVAMVRQQLGLDQPLYVQFGHYIVNVLQGDFGTSMVSHRPVSEEIASRFMPTLWLTLCSMIWAVIFGMGMGVAAAVWRNRWPDRLGMAIAVTGISFPAFALGMLLMQVFSVELGWLPTVGADSWRHYILPSITLGAAVAAVMARFTRASFVDVLNEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEVLLFSLEFILINLVVDVLYAAINPAIRYK
>NZ_CP054058.1|WP_125353823.1|3024426_3025338_-|glutathione-ABC-transporter-permease-GsiD
MRLLNWRRQAIMNALPGVAPGQVRTPWHEFWRKFRKQPVAMAAAVFVLLLILVAFLAPWIAPFDAENYFDYDRLNEGPSMMHWFGVDSLGRDIFSRVLVGARISLAAGVFAVLIGAVVGTVLGLLAGYYEGWWDRVIMRICDVLFAFPGILLAIAVVAVMGSGMANVIIAVAIFSVPAFARLVRGNTLVLKQQTFIESSRSIGASDSTILFRHILPGTVSSIVVYFTMRIGVSIISAASLSFLGLGAQPPTPEWGAMLNEARADMVMSPHVALFPALAIFLTVLAFNLLGDGLRDALDPKIKG
>NZ_CP054058.1|WP_125354553.1|3037619_3038435_+|HAD-family-hydrolase
MTVKVIVTDMDGTFLNDAKQYSRERFLTQFEQLKQRGIEFVVASGNQYYQLISFFPEIRDQISFVAENGALVYQHGQELFHGELTRHESQVVIGELLKDPQLNFVACGLESAYISDKAPEEFVKLMSKHYHRLKPVSDYQQIDDKIFKFSLNLPDSEIPQLIDALHVSLDGIMKPVTSGFGFVDLIIPGLHKANGISRLLKNWQLSPSDCVGIGDSGNDAEMLKLVKYSFAMANAADSIKAIARYQTDDNNHDGALNVIQAVLDNASPFDA
>NZ_CP054058.1|WP_125354552.1|3038619_3039885_+|DUF1479-domain-containing-protein
MALTFTRSTLPADHKAAIREMKKALRAQIGDVQAVFDQLTAHIEARVAEIDALKAAGKPVWPVVAYDDLASGKVTEAQREEIKRRGCAVIKGQFPREQALDWDRSMLDYLDRNRFDEVYKGPGDNFFGTLTASRPEIYPIYWSQAQMQARQSNEMAAVQSFLNRLWCFESEGKQWFNPDVSVIYPDRIRRRPPGTTSKGLGAHTDSGALERWLLPAYQQVFANVFNGDFTKFDPWDAAHRTEVEEYTVENTTKCSVFRTFQGWTALSEMIPDQGLLHVVPIPEAMAYVLLRPLLDDVPDNELCGVAPGRVLPISAQWHPLLIKAQTSIPALEPGDSVWWHCDVIHSVAPVTEQQGWGNVMYIPAAPMCDKNLAYAQKVKIALENGASPGDFPREDYEATWEDRFTLDDLNNHGKRALGMEI
>NZ_CP054058.1|WP_125354551.1|3039881_3040973_-|LacI-family-DNA-binding-transcriptional-regulator
MEVDHRMDKKLKIAEIATRTGLSASTVSRVLAGKANTSEKARDKVLSCARELGVMEGMAAGRMLLNSLIVFAPQRAFDERSDIFYYRVIQSINKALSPHEVRLRYCALEENDSDANLFLARMNEGETQAAILLGIDDPHIHDLAADFAKPCVLINCRDERMRLPSIAPDHRLIGQFAASYLFDMGHRAVVNVMCLRRYTMELRLVGIREAWKNGNLRFQDARDLIAVPSFSAKETEEKVGAWLDAQGGKPLPTAFLVGGDFMAAGTISALQKRGLRVPQDVSVMSIDGFNLAAIQDVPLTAIHVPRDELGTEAMQMLQQRLIRPEAPRGSLLLHGTLAVRESVRRIRPGTRRTAVEREGLYDD
>NZ_CP054058.1|WP_125354550.1|3041258_3042560_+|MFS-transporter
MSQGINNDLTASKPRRVVKNLRWWVLVLFLLGVTVNYITRNSLGILAPELEKELGINSAQYSYIVGAFQLAYTIFQPLCGWLIDVIGLKLGFMICATLWAIACIAHAGAGSWLHMAVLRFGMGASEAAATPANAKTIGEWFPKSERPVAAGWAGVGFSIGAMLAPPIIYFAHASFGWQGAFMFTGFLALLWVALWWAFYHNPEQHPNLSKEELAFIQQDNEPPAVRLPFLKALSNISKNKRFYGIAIPAFMAEPAWAVMSFWVPLYLAKTYGMELKQIALFAWLPFLAADLGSVASGYLTKLYVRVFGCTRVNSVVASSVSGAFLMLSLAMMAFTTNPYVAIALISVGGFGHQIISCMLSALVVESFDKGQMATVNGMRGSAAWIASFAFSLIIGVTADKIGFNPLFIAMGFFDLIGAVFLVAFIAERRAKRA
>NZ_CP054058.1|WP_125354549.1|3042577_3044944_+|glycoside-hydrolase-family-31-protein
MKTLKHWTFEKQSAHHVELRVDGQHTLCLYMLEENLFRVLLKRQGKLALDKTWSIAPDQDVPWEGRSRDDISGFSLPSWTLDKQADKLTISTAQLRVTVHQPLWLEWHYRNEAGEWQYLTGDRPTSAYLVNAHGDGVAHYLKRQKDERFYGLGEKAGDLQRTGKRFEMRNLDAMGYNAASTDPLYKHIPFTITRRDDVSVGLFYDNLSSSWLDLGNELDNYHTAYRRWQAEAGDIDYYLFTGKRVLDITKAFVRLTGKTLFGPKWSLGYSGSTMHYTDAPDAQNQLMNFIRLCDEHAIPCDSFQLSSGYTSINGKRYVFNWNYDKVPQPKVMSQAFHDAGLKLAANIKPCLLQDHPRYNEVAEKGLFVRDSDANAPERSVFWDDEGSHLDFTNPATVAWWQDGVTRQLLEMGIDSTWNDNNEYEVWDGEARCHGFGKEIAIKHVRPVMPLLMMRASMEAQQRFAPEKRPYLISRSGCAGMQRYVQTWSGDNRTNWQTLRYNTRMGVGMSLSGLFNVGHDVGGFSGDKPDAELFVRWVQNGVMHPRFTIHSWNDDQTVNEPWMYPGVTPAIRGAIELRYRLLPYLYTLLWQAHADDEPMLRPTFLDHEHDAQTFEECDDFMLGRDLLVASVVEQGQRQRTLWLPDNETGWYDFYTGEWFSGGQQITVDAPLEKLPLLVRAGAGLPLSDRIKHVNPETDTHRELNLLPLKGVGRDHGMLFEDDGETWGYKEGNALWLEWDMECSASTINLTFNPRGDFRPAWKALLVTLPAGEKRQLLINGEAASEWRLM
>NZ_CP054058.1|WP_110509994.1|3045005_3046601_-|ABC-F-family-ATPase
MLVTSNVTMQFGSKPLFENISVKFGGGNRYGLIGANGSGKSTFMKILGGDLDPTLGNVSLDPNERIGKLRQDQFAFEEFTVLDTVIMGHAELWEVKQERDRIYGLAEMTEEDGYKVADLEVTYGEMDGYTAESRAGELLLGVGIPLEQHYGPMSEVAPGWKLRVLLAQALFANPDILLLDEPTNNLDIDTIRWLESVLNERNSTMIIISHDRHFLNMVCTHMADLDYGELRVYSGNYDEYMTAATQARERLLSDNAKKKAQIADLQSFVSRFSANASKSRQATSRARQIDKIKLDEVKASSRQNPFMRFEQDKKLFRNALEVENLTKGFDNGPLFKNVKLLMEVGEKLAILGTNGVGKSTLLKTLVGDLTPESGTVKWSENAKIGYYAQDHEYEFENDLSVFDWMSQWKQEGDDEQVVRSFLGRLLFSQDDIKKPAKVLSGGEKGRMLFGKLMMEKPNILVMDEPTNHLDMESIESLNMALEMYQGTLIFVSHDREFVSSLATRVIEITPERVIDFSGNYEDYLRSKGIDD
>NZ_CP054058.1|WP_125354563.1|3046829_3047750_+|L,D-transpeptidase
MKMKISTLFAAALAVMGFCNTASAVTYPLPTDGSRLIGQNQVITIPDENKQPLEYFAAQYQMGLSNMTEANPGIDVYLPKGGSVLNIPQQLILPDTPHEGIVINSAEMRLYYYPAGTNTVIVLPIGIGQLGKDTPINWVTKVERKKAGPTWTPTAKMHAEYAEAGNPLPAVVPAGPDNPMGLYALYIGRLYAIHGTNANFGIGLRVSHGCVRLRNEDIKFLFQNVPVGTRVQFIDEPVKATTEPDGSRYIEVHNPLSTTDAQFNGGEVVPISLNKSVQTVTGQADVDTKVVDQAVQDRSGMPVRLN
>NZ_CP054058.1|WP_125354548.1|3048025_3048853_+|glycosyltransferase-family-2-protein
MISINLTTTKSRLYLCSQTVWSLANQSVPVDQIVVWVSREAYLSDEGITEEPAWAEKIRKTGTSLIFKWVKNTGPYRKLFPALRDATEDDILIYADDDAIYSELWTQSLLSDFERHDQKCVVAARVRETVKKKNDILDTYRKFPLISLPIVVQDNYIITGLGGVVLKKSHINPMFLDNEDYLTICPRADDIWISKLVQLSKTPLYVSAPTIKHVHEIEHEYGLSRTNTRKISYSVIQKLRSTFGQKKKVSTICQNDLYIQDTNEYFASCAPEGSF
>NZ_CP054058.1|WP_110509995.1|3048849_3049563_-|GntR-family-transcriptional-regulator
MAAKYLTIAREIKKRIISQRYPASSPLPDQFALAAEFQTSRMTIQQAIRQLIVEGLIYTRQGQGTFVRKNFLQLSQWDLPGSDYFGATKTWEHLGTVSSQVVRFDLRFPNEKEQSSLLINADAPVYDFVRLRLLNGEPMSLDATVMPVNLVPGLNKGHLESSVFQYVETLGLKIMGSYRVVRAIKPGELEQQHLICEAGDPVLEVEQVIYLEDGTPLEYAHCHYRYDHGGIVIVNNG
>NZ_CP054058.1|WP_125354547.1|3049574_3050894_-|PTS-sugar-transporter-subunit-IIC
MSDNVTSNMQSFTDRFVEFSARIANQVHLRSLRDAFAGVMPIFILAGLAVLVNNVVFPWIFEGETLVRFKVWGEAIINGTLNIAALLIAPMIAWSLARNKNFGNPVSAVVIALCSFIIMMPMQVDMVPVGGKVAVSLTSILTFANIGSTGIFAGVIIGLLSTEVFIRIAQFKRLEINLGDNVPPAVSQSFSSLLPTIITLSLFAVFAALLSNLLHTDLIHLITMLIQQPLRLINTSLPGTLFIYSFGNFLFTLGIHQSVVNSVVLEPFLLINTNENMLAYAAGQPIPHIINNIFVPTFGMVGGTGSTISLLIAIFLFSRQKASKQVARLAITPGLFNINEPVIFGLPIVFNVPLMIPFVLLPAIGIFFAWVCTTLGLMSRCVVMIPWTTPPILSAWLATAGDWRAVVVQLIIIVFGVFFYLPFLKIAEKVALRNNGITD

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP054058_1	1.7\|674758\|29\|NZ_CP054058\|CRT	674758-674786	29	NZ_CP054058.1	674807-674835	2	0.931

1. spacer 1.7|674758|29|NZ_CP054058|CRT matches to position: 674807-674835, mismatch: 2, identity: 0.931

gcgcgggcctacgaggacgggatgttgtc	CRISPR spacer
gcacgggcctacgaggccgggatgttgtc	Protospacer
**.************* ************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP054058_1	1.3\|674562\|29\|NZ_CP054058\|CRT	674562-674590	29	NZ_CP007795	Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence	803808-803836	6	0.793
NZ_CP054058_1	1.5\|674660\|29\|NZ_CP054058\|CRT	674660-674688	29	NZ_CP007795	Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence	803808-803836	6	0.793
NZ_CP054058_1	1.5\|674660\|29\|NZ_CP054058\|CRT	674660-674688	29	NC_024970	Streptomyces aureofaciens strain CCM3239 plasmid pSA3239, complete sequence	114436-114464	6	0.793
NZ_CP054058_1	1.5\|674660\|29\|NZ_CP054058\|CRT	674660-674688	29	NZ_KJ396772	Streptomyces lavendulae subsp. lavendulae strain CCM3239 plasmid pSA3239, complete sequence	114436-114464	6	0.793
NZ_CP054058_1	1.5\|674660\|29\|NZ_CP054058\|CRT	674660-674688	29	NZ_CP024986	Streptomyces lavendulae subsp. lavendulae strain CCM 3239 plasmid pSA3239, complete sequence	126613-126641	6	0.793
NZ_CP054058_1	1.6\|674709\|29\|NZ_CP054058\|CRT	674709-674737	29	NZ_CP007795	Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence	803808-803836	6	0.793
NZ_CP054058_1	1.6\|674709\|29\|NZ_CP054058\|CRT	674709-674737	29	NC_024970	Streptomyces aureofaciens strain CCM3239 plasmid pSA3239, complete sequence	114436-114464	6	0.793
NZ_CP054058_1	1.6\|674709\|29\|NZ_CP054058\|CRT	674709-674737	29	NZ_KJ396772	Streptomyces lavendulae subsp. lavendulae strain CCM3239 plasmid pSA3239, complete sequence	114436-114464	6	0.793
NZ_CP054058_1	1.6\|674709\|29\|NZ_CP054058\|CRT	674709-674737	29	NZ_CP024986	Streptomyces lavendulae subsp. lavendulae strain CCM 3239 plasmid pSA3239, complete sequence	126613-126641	6	0.793
NZ_CP054058_1	1.4\|674611\|29\|NZ_CP054058\|CRT	674611-674639	29	NZ_CP009292	Novosphingobium pentaromativorans US6-1 plasmid pLA3, complete sequence	267481-267509	7	0.759
NZ_CP054058_1	1.5\|674660\|29\|NZ_CP054058\|CRT	674660-674688	29	NZ_CP043499	Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence	723912-723940	7	0.759
NZ_CP054058_1	1.6\|674709\|29\|NZ_CP054058\|CRT	674709-674737	29	NZ_CP043499	Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence	723912-723940	7	0.759
NZ_CP054058_1	1.3\|674562\|29\|NZ_CP054058\|CRT	674562-674590	29	NZ_CP013255	Kocuria flava strain HO-9041 plasmid 1, complete sequence	108544-108572	8	0.724
NZ_CP054058_1	1.5\|674660\|29\|NZ_CP054058\|CRT	674660-674688	29	NZ_CP013255	Kocuria flava strain HO-9041 plasmid 1, complete sequence	108544-108572	8	0.724
NZ_CP054058_1	1.6\|674709\|29\|NZ_CP054058\|CRT	674709-674737	29	NZ_CP013255	Kocuria flava strain HO-9041 plasmid 1, complete sequence	108544-108572	8	0.724

1. spacer 1.3|674562|29|NZ_CP054058|CRT matches to NZ_CP007795 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence) position: , mismatch: 6, identity: 0.793

ccgcgggcctacggggccgggatgttgtc	CRISPR spacer
atgaaggcctacggggccggaatgttgtt	Protospacer
 .* .***************.*******.

2. spacer 1.5|674660|29|NZ_CP054058|CRT matches to NZ_CP007795 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence) position: , mismatch: 6, identity: 0.793

acacgggcctacggggccgggatgttgtc	CRISPR spacer
atgaaggcctacggggccggaatgttgtt	Protospacer
*.. .***************.*******.

3. spacer 1.5|674660|29|NZ_CP054058|CRT matches to NC_024970 (Streptomyces aureofaciens strain CCM3239 plasmid pSA3239, complete sequence) position: , mismatch: 6, identity: 0.793

acacgggcctacggggccgggatgttgtc	CRISPR spacer
gcgctcgcctacggggccggggtggtgtc	Protospacer
.*.*  ***************.** ****

4. spacer 1.5|674660|29|NZ_CP054058|CRT matches to NZ_KJ396772 (Streptomyces lavendulae subsp. lavendulae strain CCM3239 plasmid pSA3239, complete sequence) position: , mismatch: 6, identity: 0.793

acacgggcctacggggccgggatgttgtc	CRISPR spacer
gcgctcgcctacggggccggggtggtgtc	Protospacer
.*.*  ***************.** ****

5. spacer 1.5|674660|29|NZ_CP054058|CRT matches to NZ_CP024986 (Streptomyces lavendulae subsp. lavendulae strain CCM 3239 plasmid pSA3239, complete sequence) position: , mismatch: 6, identity: 0.793

acacgggcctacggggccgggatgttgtc	CRISPR spacer
gcgctcgcctacggggccggggtggtgtc	Protospacer
.*.*  ***************.** ****

6. spacer 1.6|674709|29|NZ_CP054058|CRT matches to NZ_CP007795 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence) position: , mismatch: 6, identity: 0.793

acacgggcctacggggccgggatgttgtc	CRISPR spacer
atgaaggcctacggggccggaatgttgtt	Protospacer
*.. .***************.*******.

7. spacer 1.6|674709|29|NZ_CP054058|CRT matches to NC_024970 (Streptomyces aureofaciens strain CCM3239 plasmid pSA3239, complete sequence) position: , mismatch: 6, identity: 0.793

acacgggcctacggggccgggatgttgtc	CRISPR spacer
gcgctcgcctacggggccggggtggtgtc	Protospacer
.*.*  ***************.** ****

8. spacer 1.6|674709|29|NZ_CP054058|CRT matches to NZ_KJ396772 (Streptomyces lavendulae subsp. lavendulae strain CCM3239 plasmid pSA3239, complete sequence) position: , mismatch: 6, identity: 0.793

acacgggcctacggggccgggatgttgtc	CRISPR spacer
gcgctcgcctacggggccggggtggtgtc	Protospacer
.*.*  ***************.** ****

9. spacer 1.6|674709|29|NZ_CP054058|CRT matches to NZ_CP024986 (Streptomyces lavendulae subsp. lavendulae strain CCM 3239 plasmid pSA3239, complete sequence) position: , mismatch: 6, identity: 0.793

acacgggcctacggggccgggatgttgtc	CRISPR spacer
gcgctcgcctacggggccggggtggtgtc	Protospacer
.*.*  ***************.** ****

10. spacer 1.4|674611|29|NZ_CP054058|CRT matches to NZ_CP009292 (Novosphingobium pentaromativorans US6-1 plasmid pLA3, complete sequence) position: , mismatch: 7, identity: 0.759

gcacgggcctatgaggacggggtgttgtc	CRISPR spacer
gcacgggcctttgaggacgggctcatcga	Protospacer
********** ********** *  *

11. spacer 1.5|674660|29|NZ_CP054058|CRT matches to NZ_CP043499 (Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.759

acacgggcctacggggccgggatgttgtc	CRISPR spacer
acacgggcctacggcgacgggatcgagag	Protospacer
************** * ******   *

12. spacer 1.6|674709|29|NZ_CP054058|CRT matches to NZ_CP043499 (Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.759

acacgggcctacggggccgggatgttgtc	CRISPR spacer
acacgggcctacggcgacgggatcgagag	Protospacer
************** * ******   *

13. spacer 1.3|674562|29|NZ_CP054058|CRT matches to NZ_CP013255 (Kocuria flava strain HO-9041 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.724

ccgcgggcctacggggccgggatgttgtc	CRISPR spacer
ggccgggcctacgggggcgggatgctcaa	Protospacer
   ************* *******.*

14. spacer 1.5|674660|29|NZ_CP054058|CRT matches to NZ_CP013255 (Kocuria flava strain HO-9041 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.724

acacgggcctacggggccgggatgttgtc	CRISPR spacer
ggccgggcctacgggggcgggatgctcaa	Protospacer
.  ************* *******.*

15. spacer 1.6|674709|29|NZ_CP054058|CRT matches to NZ_CP013255 (Kocuria flava strain HO-9041 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.724

acacgggcctacggggccgggatgttgtc	CRISPR spacer
ggccgggcctacgggggcgggatgctcaa	Protospacer
.  ************* *******.*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

972221 : 1074752

Escherichia_phage(14.63%)

plate,protease,terminase,tail,portal,tRNA,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_174081236.1\|972221_973388_-	DUF3596 domain-containing protein	I6PDJ1	Cronobacter_phage	7.6e-143	65.7
WP_125356014.1\|973594_974164_-	3'-5' exoribonuclease	K7PLW7	Enterobacteria_phage	2.2e-79	73.0
WP_174081237.1\|974166_974340_-	hypothetical protein	NA	NA	NA	NA
WP_125356028.1\|974583_975126_-	HD family hydrolase	A0A192Y8M4	Salmonella_phage	2.1e-74	75.8
WP_174081238.1\|975907_976534_-	LexA family transcriptional regulator	K7PM82	Enterobacteria_phage	4.2e-47	49.8
WP_174081239.1\|976635_976833_+	cell division protein	NA	NA	NA	NA
WP_174081423.1\|976873_977431_+	DNA-binding protein	A0A1C9II13	Salmonella_phage	1.2e-64	64.8
WP_125355967.1\|977605_977797_+	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_174081240.1\|977793_978678_+	conserved phage C-terminal domain-containing protein	A0A1C9IHW0	Salmonella_phage	2.8e-52	76.7
WP_174081241.1\|978674_978932_+	hypothetical protein	NA	NA	NA	NA
WP_174081242.1\|979005_979689_+	phage antirepressor KilAC domain-containing protein	G0ZND1	Cronobacter_phage	2.5e-61	58.7
WP_174081243.1\|979685_980717_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	1.2e-110	56.0
WP_174081244.1\|980733_981084_+	antitermination protein	A0A0P0ZCW0	Stx2-converting_phage	4.4e-54	85.8
WP_174081245.1\|981515_982400_-	hypothetical protein	NA	NA	NA	NA
WP_174081246.1\|982680_982875_+	TrmB family transcriptional regulator	Q8SBE3	Shigella_phage	6.1e-21	79.7
WP_125351760.1\|983022_984075_+	site-specific DNA-methyltransferase	Q8SBE2	Shigella_phage	2.7e-171	79.5
WP_125351759.1\|984217_985081_+	cell envelope biogenesis protein OmpA	NA	NA	NA	NA
WP_125351758.1\|985273_986116_+	cell envelope biogenesis protein OmpA	NA	NA	NA	NA
WP_125351757.1\|986209_986428_+	hypothetical protein	Q3HQX5	Burkholderia_phage	9.9e-12	64.9
WP_168713813.1\|986688_986826_-	hypothetical protein	NA	NA	NA	NA
WP_125351756.1\|986930_987344_-	type II toxin-antitoxin system HicB family antitoxin	A0A0D4DCG1	Acinetobacter_phage	2.3e-17	37.0
WP_125351755.1\|987402_987585_-	type II toxin-antitoxin system HicA family toxin	A0A0D4DC32	Acinetobacter_phage	2.2e-12	54.2
WP_174081247.1\|987690_989157_+	glycosyltransferase family 2 protein	S4TSQ9	Salmonella_phage	2.6e-220	72.8
WP_125351753.1\|989363_989888_+	KilA-N domain-containing protein	A0A2H4FQV0	Salmonella_phage	3.9e-46	51.7
WP_174081248.1\|989888_990488_+	hypothetical protein	K7PGW6	Enterobacterial_phage	7.5e-70	66.7
WP_125351751.1\|990663_991158_+	DUF1441 family protein	A0A291AWV8	Escherichia_phage	1.9e-50	66.9
WP_174081249.1\|991157_993263_+\|terminase	phage terminase large subunit family protein	A0A291AWY5	Escherichia_phage	0.0e+00	75.1
WP_174081250.1\|993264_993483_+	hypothetical protein	NA	NA	NA	NA
WP_174081251.1\|993482_995015_+\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	4.1e-136	51.5
WP_174081424.1\|995007_997011_+\|protease	Clp protease ClpP	K7PKX4	Enterobacterial_phage	1.3e-177	49.2
WP_174081252.1\|997075_997405_+	DUF2190 family protein	Q9EYD5	Enterobacteria_phage	5.0e-07	34.3
WP_125351746.1\|997404_997761_+	hypothetical protein	NA	NA	NA	NA
WP_174081253.1\|997757_998396_+	hypothetical protein	NA	NA	NA	NA
WP_174081254.1\|998392_998959_+	hypothetical protein	NA	NA	NA	NA
WP_125351743.1\|998958_999465_+\|tail	phage major tail tube protein	NA	NA	NA	NA
WP_174081255.1\|999461_1000079_+\|tail	phage tail protein	NA	NA	NA	NA
WP_174081256.1\|1000071_1000686_+\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
WP_174081257.1\|1000710_1001046_+	GPW/gp25 family protein	D4HTV2	Vibrio_phage	2.6e-19	43.2
WP_174081425.1\|1001108_1001969_+\|plate	baseplate J/gp47 family protein	A0A088FQL4	Escherichia_phage	2.0e-63	48.2
WP_174081258.1\|1001943_1002483_+\|tail	phage tail protein I	A0A088FVH1	Escherichia_phage	3.5e-34	40.4
WP_174081259.1\|1002475_1003951_+\|tail	phage tail protein	F1BUP1	Erwinia_phage	2.1e-20	42.6
WP_125355902.1\|1003979_1004384_+\|tail	tail fiber assembly protein	U5P083	Shigella_phage	3.3e-21	48.2
WP_125355893.1\|1004397_1005234_+	peptidoglycan-binding protein	D6QWP0	uncultured_phage	1.6e-33	53.3
WP_168713908.1\|1005230_1005401_+	hypothetical protein	NA	NA	NA	NA
WP_168713909.1\|1005397_1005571_+	hypothetical protein	NA	NA	NA	NA
WP_125355894.1\|1005627_1007121_+\|tail	phage tail sheath subtilisin-like domain-containing protein	R9TMQ0	Vibrio_phage	6.5e-70	35.2
WP_125355896.1\|1007133_1007643_+\|tail	phage major tail tube protein	Q7M2A5	Pseudomonas_phage	1.8e-11	28.1
WP_125355898.1\|1007837_1008275_-	hypothetical protein	NA	NA	NA	NA
WP_125355900.1\|1008525_1008813_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_174081260.1\|1008928_1010587_+	hypothetical protein	R9TRP8	Vibrio_phage	1.2e-24	29.5
WP_174081261.1\|1010597_1010804_+\|tail	tail protein X	NA	NA	NA	NA
WP_174081262.1\|1010807_1011851_+	late control protein	R9TNM7	Vibrio_phage	1.3e-29	30.6
WP_174081263.1\|1012081_1012942_+	hypothetical protein	NA	NA	NA	NA
WP_133461249.1\|1013900_1015064_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
WP_174081264.1\|1015071_1017264_-	type I secretion system permease/ATPase	F2Y2R6	Organic_Lake_phycodnavirus	9.0e-20	29.6
WP_174081265.1\|1017260_1018670_-	TolC family outer membrane protein	NA	NA	NA	NA
WP_174081266.1\|1018745_1030313_-	BapA prefix-like domain-containing protein	NA	NA	NA	NA
WP_110512046.1\|1031088_1031571_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	5.6e-31	48.7
WP_110512047.1\|1031717_1032155_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_125352756.1\|1032144_1032432_+	RnfH family protein	NA	NA	NA	NA
WP_125352754.1\|1032473_1032818_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_125352752.1\|1032955_1034617_-	DNA repair protein RecN	NA	NA	NA	NA
WP_110512051.1\|1034703_1035582_-	NAD(+) kinase	NA	NA	NA	NA
WP_148098772.1\|1035704_1036298_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_125352748.1\|1036353_1037640_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_110512053.1\|1037659_1038451_-	inner membrane protein YpjD	NA	NA	NA	NA
WP_125352746.1\|1038616_1039978_+	signal recognition particle protein	NA	NA	NA	NA
WP_110512055.1\|1040222_1040471_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_125352744.1\|1040489_1041038_+	ribosome maturation factor RimM	NA	NA	NA	NA
WP_110512057.1\|1041083_1041851_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_031374778.1\|1041892_1042240_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_125352742.1\|1042368_1042773_+	DUF2946 domain-containing protein	NA	NA	NA	NA
WP_125352740.1\|1042831_1044199_+	PepSY domain-containing protein	NA	NA	NA	NA
WP_125352738.1\|1044334_1044709_-	DUF2799 domain-containing protein	NA	NA	NA	NA
WP_125352736.1\|1044929_1046000_+	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0B6VT43	Edwardsiella_phage	6.9e-90	50.9
WP_125352734.1\|1046009_1047131_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_125352732.1\|1047195_1048068_+	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_125352730.1\|1048064_1049225_-	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_110512077.1\|1049324_1049372_-	hypothetical protein	NA	NA	NA	NA
WP_110512068.1\|1049494_1049827_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_110512069.1\|1050095_1050839_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_110512070.1\|1050970_1051951_+	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_125352728.1\|1051947_1052679_+	polyphenol oxidase	NA	NA	NA	NA
WP_125352726.1\|1052807_1055381_+	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	2.7e-124	34.6
WP_125352785.1\|1061148_1062447_+	MFS transporter	Q6JIH2	Burkholderia_virus	1.2e-40	30.0
WP_125352787.1\|1062448_1062772_-	YfiM family lipoprotein	NA	NA	NA	NA
WP_125352789.1\|1062818_1064174_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_125352791.1\|1064288_1066946_-	protein lysine acetyltransferase	NA	NA	NA	NA
WP_125352793.1\|1066981_1067680_-	DTW domain-containing protein	NA	NA	NA	NA
WP_110508823.1\|1067749_1068175_-	thioredoxin TrxC	A0A0K2FIM3	Achromobacter_phage	1.2e-13	36.5
WP_125352795.1\|1068383_1069481_+\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
WP_174081267.1\|1069535_1070852_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_125355265.1\|1070958_1071648_-	uracil-DNA glycosylase	A0A077BCN4	Equid_alphaherpesvirus	7.4e-53	50.9
WP_110508829.1\|1071966_1072350_+	autonomous glycyl radical cofactor GrcA	A0A193GZ98	Escherichia_phage	8.0e-33	70.9
WP_110508832.1\|1072539_1073880_-	ATP-dependent RNA helicase SrmB	A0A1B1IS59	uncultured_Mediterranean_phage	5.0e-45	30.0
WP_125355268.1\|1074014_1074752_+\|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN	NA	NA	NA	NA

DBSCAN-SWA_2

1633866 : 1728387

Salmonella_phage(78.38%)

plate,holin,integrase,terminase,tail,portal,head,coat,transposase,capsid

attL 1642123:1642139|attR 1702201:1702217

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_125351954.1\|1633866_1635035_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	3.5e-172	91.8
WP_174081282.1\|1635096_1636041_+	hypothetical protein	NA	NA	NA	NA
WP_148098766.1\|1636074_1637952_-	hypothetical protein	NA	NA	NA	NA
WP_174081283.1\|1638081_1639050_-	glycosyltransferase family 2 protein	A0A2H5BFL1	Salmonella_phage	1.6e-53	39.8
WP_125351950.1\|1639049_1639436_-	GtrA family protein	NA	NA	NA	NA
WP_125351949.1\|1639569_1639959_+	LexA family transcriptional regulator	K7P6F7	Enterobacteria_phage	7.6e-55	78.1
WP_168713820.1\|1640202_1641222_-	acyltransferase family protein	NA	NA	NA	NA
WP_125351947.1\|1641617_1642436_-	hypothetical protein	NA	NA	NA	NA
1642123:1642139	attL	NA	NA	NA	NA
WP_125351946.1\|1643188_1643602_+	lipoprotein	NA	NA	NA	NA
WP_174081284.1\|1643663_1645151_-	alpha-amylase	NA	NA	NA	NA
WP_110509627.1\|1645232_1645610_-	flagella biosynthesis regulatory protein FliT	NA	NA	NA	NA
WP_125351945.1\|1645609_1646020_-	flagellar export chaperone FliS	NA	NA	NA	NA
WP_125351944.1\|1646042_1647449_-	flagellar filament capping protein FliD	NA	NA	NA	NA
WP_125351943.1\|1647716_1648922_+	FliC/FljB family flagellin	NA	NA	NA	NA
WP_110509631.1\|1649085_1649817_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA
WP_125351942.1\|1649869_1650418_+	flagella biosynthesis regulatory protein FliZ	NA	NA	NA	NA
WP_125351941.1\|1650502_1651303_+	cystine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_125351940.1\|1651584_1653576_+	hypothetical protein	NA	NA	NA	NA
WP_125351939.1\|1653680_1654667_+	D-cysteine desulfhydrase	NA	NA	NA	NA
WP_110509634.1\|1654679_1655348_+	cystine ABC transporter permease	NA	NA	NA	NA
WP_110509635.1\|1655344_1656097_+	L-cystine ABC transporter ATP-binding protein YecC	G3M9Y6	Bacillus_virus	6.4e-26	34.9
WP_110509636.1\|1656356_1657079_+	transcriptional regulator SdiA	NA	NA	NA	NA
WP_110509637.1\|1657128_1657353_-	DUF2594 family protein	NA	NA	NA	NA
WP_110509638.1\|1657817_1658474_+	UvrY/SirA/GacA family response regulator transcription factor	NA	NA	NA	NA
WP_125351938.1\|1658470_1660303_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_110509640.1\|1660358_1660907_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_125351937.1\|1661603_1662200_+	hypothetical protein	NA	NA	NA	NA
WP_125351936.1\|1662165_1662354_+	hypothetical protein	NA	NA	NA	NA
WP_125351935.1\|1662476_1663481_-\|integrase	tyrosine-type recombinase/integrase	P79671	Haemophilus_phage	9.3e-105	58.7
WP_125351934.1\|1663467_1663803_-	hypothetical protein	NA	NA	NA	NA
WP_125351933.1\|1663827_1664463_-	hypothetical protein	NA	NA	NA	NA
WP_125351932.1\|1664488_1664881_-	helix-turn-helix transcriptional regulator	A0A2H4JFL3	uncultured_Caudovirales_phage	8.3e-09	38.3
WP_125351929.1\|1665378_1665579_+	DUF4761 family protein	A0A0M5M1I3	Salmonella_phage	6.5e-26	87.3
WP_125351928.1\|1665571_1665802_+	DUF2724 domain-containing protein	A0A0M4S6M9	Salmonella_phage	1.3e-30	80.3
WP_125351927.1\|1665892_1666105_+	hypothetical protein	A0A0M4R514	Salmonella_phage	1.1e-20	73.5
WP_125351926.1\|1666106_1666994_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A0M4QWR0	Salmonella_phage	1.6e-124	77.0
WP_125351925.1\|1666990_1669390_+	replication endonuclease	A0A0M4RTM8	Salmonella_phage	0.0e+00	81.8
WP_125351924.1\|1669462_1670953_+	hypothetical protein	NA	NA	NA	NA
WP_125351923.1\|1671044_1672397_-	hypothetical protein	R9TRQ8	Vibrio_phage	3.6e-19	27.0
WP_125351922.1\|1672812_1673862_-\|portal	phage portal protein	A0A0M5M1H6	Salmonella_phage	1.6e-192	92.0
WP_125351921.1\|1675729_1676575_+\|capsid	GPO family capsid scaffolding protein	A0A1J0I2E9	Salmonella_phage	5.0e-136	88.3
WP_125351920.1\|1676615_1677671_+\|capsid	phage major capsid protein, P2 family	A0A0M3ULA3	Salmonella_phage	4.9e-189	95.1
WP_125351919.1\|1677713_1678562_+\|terminase	terminase	A0A0M4R523	Salmonella_phage	2.1e-121	94.1
WP_125351918.1\|1678664_1679153_+\|head	head completion/stabilization protein	A0A0M4QWR7	Salmonella_phage	4.4e-84	96.3
WP_125351917.1\|1679152_1679353_+\|tail	tail protein X	A0A0M4RTN6	Salmonella_phage	1.9e-30	95.5
WP_059339042.1\|1679363_1679696_+\|holin	phage holin, lambda family	A0A0M3ULH4	Salmonella_phage	2.1e-45	84.5
WP_125351916.1\|1679682_1680123_+	lysozyme	A0A0M5M782	Salmonella_phage	2.2e-71	90.4
WP_125351915.1\|1680198_1680726_+	DUF2514 family protein	A0A0M4S5V1	Salmonella_phage	5.1e-38	87.9
WP_125351914.1\|1680725_1681220_+\|tail	phage tail protein	A0A0M4R2U5	Salmonella_phage	1.9e-74	90.8
WP_125351913.1\|1681180_1681819_+	phage virion morphogenesis protein	A0A0M4RCU1	Salmonella_phage	3.9e-109	91.5
WP_125355022.1\|1681941_1682562_+\|plate	phage baseplate assembly protein V	A0A0M3ULA5	Salmonella_phage	8.6e-93	85.5
WP_125355021.1\|1682558_1682921_+	GPW/gp25 family protein	A0A0M4S6L5	Salmonella_phage	3.0e-53	88.3
WP_125355020.1\|1682917_1683829_+\|plate	baseplate assembly protein	A0A0M4REB7	Salmonella_phage	5.8e-154	93.1
WP_125355019.1\|1683821_1684436_+\|tail	phage tail protein I	A0A1J0I2I4	Salmonella_phage	5.7e-105	93.8
WP_125355018.1\|1685365_1685806_+\|tail	tail fiber assembly protein	A0A218M4J2	Erwinia_phage	5.6e-14	56.1
WP_174081285.1\|1685942_1686392_-\|tail	phage tail protein	A0A1J0I2L5	Salmonella_phage	2.0e-75	93.3
WP_125351868.1\|1686402_1689330_-\|tail	phage tail tape measure protein	A0A0M4R2V3	Salmonella_phage	0.0e+00	85.3
WP_125351869.1\|1689330_1689447_-\|tail	GpE family phage tail protein	A0A0M3ULA8	Salmonella_phage	1.5e-14	97.4
WP_125351870.1\|1689455_1689791_-\|tail	phage tail assembly protein	A0A0M4RCV2	Salmonella_phage	6.3e-50	95.5
WP_125351871.1\|1689805_1690321_-\|tail	phage major tail tube protein	A0A0M5M1I5	Salmonella_phage	4.8e-89	93.6
WP_125351872.1\|1690333_1691527_-\|tail	phage tail sheath subtilisin-like domain-containing protein	A0A0M4S6M1	Salmonella_phage	2.4e-216	94.5
WP_125351873.1\|1691684_1692803_+	phage late control D family protein	A0A0M4REC6	Salmonella_phage	1.0e-189	98.1
WP_125351874.1\|1692851_1693094_+	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA
WP_125351875.1\|1693181_1693565_+	hypothetical protein	A0A0M4QWT0	Salmonella_phage	1.9e-58	87.4
WP_125351876.1\|1693646_1694282_+	type VI secretion protein	NA	NA	NA	NA
WP_125351877.1\|1694626_1695292_+	YecA family protein	NA	NA	NA	NA
WP_125351878.1\|1695336_1695696_-	DUF4156 domain-containing protein	NA	NA	NA	NA
WP_125351879.1\|1695910_1697122_-	tyrosine transporter TyrP	NA	NA	NA	NA
WP_110509647.1\|1697300_1697798_-	non-heme ferritin	NA	NA	NA	NA
WP_125351880.1\|1697989_1698328_-	hypothetical protein	NA	NA	NA	NA
WP_110509649.1\|1698647_1699286_+	RpiB/LacA/LacB family sugar-phosphate isomerase	NA	NA	NA	NA
WP_125351881.1\|1699324_1700746_-	MFS transporter	NA	NA	NA	NA
WP_125351882.1\|1700881_1701136_+	DUF2766 domain-containing protein	NA	NA	NA	NA
WP_125351883.1\|1701269_1702406_+	hypothetical protein	NA	NA	NA	NA
1702201:1702217	attR	NA	NA	NA	NA
WP_125351884.1\|1702399_1702663_+	hypothetical protein	NA	NA	NA	NA
WP_125351885.1\|1702769_1704113_-	anaerobic C4-dicarboxylate transporter	NA	NA	NA	NA
WP_125351886.1\|1704278_1704782_-	non-heme ferritin-like protein	NA	NA	NA	NA
WP_125351887.1\|1705044_1705602_+	DJ-1/PfpI family protein	NA	NA	NA	NA
WP_110512325.1\|1705886_1706867_+	arabinose ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_125351888.1\|1706926_1708441_+	L-arabinose ABC transporter ATP-binding protein AraG	A0A2H4PQG7	Staphylococcus_phage	1.6e-12	27.5
WP_110512327.1\|1708463_1709444_+	L-arabinose ABC transporter permease AraH	NA	NA	NA	NA
WP_168713819.1\|1709713_1710508_+	trehalose-phosphatase	NA	NA	NA	NA
WP_125351890.1\|1710482_1711907_+	alpha,alpha-trehalose-phosphate synthase	NA	NA	NA	NA
WP_125351891.1\|1711962_1712391_-	universal stress protein UspC	NA	NA	NA	NA
WP_110512331.1\|1713179_1713539_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA
WP_110512332.1\|1713541_1714120_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA
WP_125351892.1\|1714245_1715136_+	flagellar motor stator protein MotA	NA	NA	NA	NA
WP_125351893.1\|1715132_1716062_+	flagellar motor protein MotB	NA	NA	NA	NA
WP_125351894.1\|1716066_1718106_+	chemotaxis protein CheA	NA	NA	NA	NA
WP_125351895.1\|1718127_1718631_+	chemotaxis protein CheW	NA	NA	NA	NA
WP_174081426.1\|1718704_1719679_-	hypothetical protein	NA	NA	NA	NA
WP_174081286.1\|1719869_1720964_-	hypothetical protein	NA	NA	NA	NA
WP_125351896.1\|1720984_1722652_-	acetyltransferase	NA	NA	NA	NA
WP_125351897.1\|1723148_1723718_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_125351898.1\|1723726_1724278_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_125351899.1\|1724294_1725062_+	molecular chaperone	NA	NA	NA	NA
WP_125351900.1\|1725037_1727425_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_125351901.1\|1727424_1728387_+\|coat	spore coat U domain-containing protein	NA	NA	NA	NA

DBSCAN-SWA_3

1956576 : 1966918

Tupanvirus(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_125353177.1\|1956576_1958505_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	1.3e-126	37.1
WP_110508565.1\|1958508_1959051_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	1.1e-14	31.4
WP_001124225.1\|1959147_1959345_+	50S ribosomal protein L35	NA	NA	NA	NA
WP_002440151.1\|1959397_1959754_+	50S ribosomal protein L20	NA	NA	NA	NA
WP_001386830.1\|1959888_1959933_+	pheST operon leader peptide PheM	NA	NA	NA	NA
WP_110508563.1\|1960070_1961054_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	1.4e-33	42.6
WP_125353175.1\|1961069_1963457_+\|tRNA	phenylalanine--tRNA ligase subunit beta	A0A1L3IZU3	BeAn_58058_virus	1.6e-06	26.8
WP_006820203.1\|1963461_1963761_+	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	7.2e-13	40.0
WP_125353174.1\|1964055_1964427_+	DUF4760 domain-containing protein	NA	NA	NA	NA
WP_125353172.1\|1964611_1965589_+	vitamin B12 ABC transporter permease BtuC	NA	NA	NA	NA
WP_125353170.1\|1965617_1966169_+	glutathione peroxidase	NA	NA	NA	NA
WP_168713836.1\|1966168_1966918_+	vitamin B12 ABC transporter ATP-binding protein BtuD	A0A2R8FG22	Brazilian_cedratvirus	4.9e-10	30.3

DBSCAN-SWA_4

2422142 : 2465390

Enterobacteria_phage(34.15%)

plate,holin,terminase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_125353991.1\|2422142_2422811_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	4.9e-78	59.0
WP_125353990.1\|2422811_2423132_-	hypothetical protein	K7PGV5	Enterobacterial_phage	2.0e-24	52.8
WP_174081321.1\|2423545_2424607_+	acyltransferase	NA	NA	NA	NA
WP_125353988.1\|2424637_2424835_-	hypothetical protein	NA	NA	NA	NA
WP_125353987.1\|2424834_2425875_-	hypothetical protein	Q6IWQ6	Burkholderia_phage	9.2e-15	38.1
WP_125353986.1\|2425877_2426531_-	DUF2612 domain-containing protein	Q6IWQ4	Burkholderia_phage	1.1e-34	39.5
WP_125353985.1\|2426527_2427739_-\|plate	baseplate J/gp47 family protein	Q6IWQ3	Burkholderia_phage	1.2e-74	45.6
WP_125353984.1\|2427725_2428076_-	hypothetical protein	NA	NA	NA	NA
WP_125353983.1\|2428072_2428723_-	hypothetical protein	Q6IWQ1	Burkholderia_phage	3.3e-34	36.6
WP_125353982.1\|2428703_2429582_-	hypothetical protein	I2GUF4	Acinetobacter_phage	3.0e-14	24.5
WP_125353981.1\|2429574_2429877_-	hypothetical protein	NA	NA	NA	NA
WP_125353980.1\|2429873_2430497_-	hypothetical protein	NA	NA	NA	NA
WP_125353979.1\|2430496_2432335_-\|tail	phage tail tape measure protein	A0A068CCM7	Acinetobacter_phage	2.9e-11	20.4
WP_125353978.1\|2432392_2433100_-	hypothetical protein	NA	NA	NA	NA
WP_125353977.1\|2433295_2433748_-	hypothetical protein	NA	NA	NA	NA
WP_125353976.1\|2433749_2434199_-	hypothetical protein	A0A2H4P6T4	Pseudomonas_phage	1.7e-37	50.0
WP_125353975.1\|2434247_2435759_-	DUF3383 domain-containing protein	A0A2H4P782	Pseudomonas_phage	2.0e-79	35.6
WP_125353974.1\|2435771_2436305_-	hypothetical protein	NA	NA	NA	NA
WP_148098777.1\|2436301_2436673_-	hypothetical protein	NA	NA	NA	NA
WP_125353972.1\|2436669_2437119_-	hypothetical protein	A0A077KC03	Edwardsiella_phage	2.9e-18	41.5
WP_125353971.1\|2437118_2437550_-	DUF4054 domain-containing protein	B7VFH0	Pseudomonas_phage	1.4e-17	41.2
WP_125353970.1\|2437553_2437919_-	hypothetical protein	NA	NA	NA	NA
WP_125353969.1\|2437964_2439101_-	DUF2184 domain-containing protein	Q6IWU6	Burkholderia_phage	3.1e-80	43.3
WP_125353968.1\|2439174_2439423_-	hypothetical protein	NA	NA	NA	NA
WP_125353967.1\|2439509_2440037_-	hypothetical protein	NA	NA	NA	NA
WP_125353966.1\|2440046_2441216_-	DUF2213 domain-containing protein	Q6IWU4	Burkholderia_phage	4.9e-41	42.2
WP_168713854.1\|2441215_2441854_-	hypothetical protein	A0A077KGU5	Edwardsiella_phage	5.1e-24	42.5
WP_125353964.1\|2441834_2443403_-	DUF1073 domain-containing protein	A0A0F6WD88	Pseudomonas_phage	4.5e-114	48.8
WP_125353963.1\|2443399_2444692_-\|terminase	PBSX family phage terminase large subunit	A0A1V0E5Q3	Salmonella_phage	2.0e-216	83.4
WP_125353962.1\|2444675_2445290_-\|terminase	terminase small subunit	I3PUX8	Vibrio_phage	2.4e-31	42.5
WP_125353961.1\|2445398_2445596_+	DUF2158 domain-containing protein	NA	NA	NA	NA
WP_125353960.1\|2445643_2445880_+	ATP-dependent RNA helicase HrpA	NA	NA	NA	NA
WP_125353959.1\|2445970_2446207_-	hypothetical protein	NA	NA	NA	NA
WP_125353958.1\|2446366_2446573_-	hypothetical protein	Q76H62	Enterobacteria_phage	9.9e-22	83.6
WP_125353957.1\|2446792_2447356_-	lysozyme	M9P0E5	Enterobacteria_phage	4.6e-85	91.5
WP_125354011.1\|2447333_2447558_-\|holin	class II holin family protein	M9NZI9	Enterobacteria_phage	1.7e-30	87.8
WP_125353956.1\|2447816_2448008_-	hypothetical protein	NA	NA	NA	NA
WP_125353955.1\|2448209_2448899_-	antiterminator	I6PDF8	Cronobacter_phage	6.5e-57	51.1
WP_125353954.1\|2448895_2449036_-	YlcG family protein	NA	NA	NA	NA
WP_125353953.1\|2449032_2449395_-	RusA family crossover junction endodeoxyribonuclease	K7PM48	Enterobacteria_phage	2.8e-51	82.4
WP_125353952.1\|2449391_2449682_-	DUF1364 domain-containing protein	K7PGZ6	Enterobacteria_phage	3.1e-45	89.6
WP_125353951.1\|2449674_2449845_-	NinE family protein	G8C7V4	Escherichia_phage	6.1e-17	72.7
WP_125353950.1\|2449844_2450300_-	hypothetical protein	K7P7B8	Enterobacteria_phage	1.0e-55	71.5
WP_125353948.1\|2450820_2451081_-	hypothetical protein	NA	NA	NA	NA
WP_125353947.1\|2451098_2451353_-	DNA polymerase III subunit theta	G8C7V1	Escherichia_phage	6.7e-28	76.2
WP_125353946.1\|2451352_2451679_-	hypothetical protein	NA	NA	NA	NA
WP_174081430.1\|2451825_2452674_-	ATP-binding protein	K7PLU3	Enterobacteria_phage	4.6e-97	69.6
WP_125353944.1\|2452676_2453531_-	replication protein	K7PGT1	Enterobacteria_phage	1.7e-59	47.9
WP_125353943.1\|2453564_2453864_-	hypothetical protein	A5VW96	Enterobacteria_phage	2.5e-26	64.6
WP_125353942.1\|2453897_2454122_-	helix-turn-helix domain-containing protein	G8C7U2	Escherichia_phage	9.4e-34	94.7
WP_125353941.1\|2454232_2454922_+	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	3.2e-88	68.9
WP_125353940.1\|2455020_2455494_+	hypothetical protein	K7PLT9	Enterobacteria_phage	8.1e-51	58.0
WP_125353939.1\|2455490_2456423_+	hypothetical protein	K7PGT0	Enterobacteria_phage	1.1e-88	55.0
WP_125353938.1\|2457163_2457628_-	hypothetical protein	NA	NA	NA	NA
WP_125353937.1\|2457653_2457884_-	hypothetical protein	NA	NA	NA	NA
WP_125353935.1\|2458604_2459600_+	hypothetical protein	M9P0E1	Enterobacteria_phage	4.2e-57	70.6
WP_168713853.1\|2459608_2459779_+	hypothetical protein	NA	NA	NA	NA
WP_125353934.1\|2459787_2460414_+	ERF family protein	A0A1W6JP21	Morganella_phage	7.2e-63	61.4
WP_125353933.1\|2460452_2460734_+	hypothetical protein	NA	NA	NA	NA
WP_125353932.1\|2461191_2462640_+	phage N-6-adenine-methyltransferase	A0A2H4J5Y9	uncultured_Caudovirales_phage	1.4e-93	51.1
WP_125353931.1\|2462636_2462861_+	hypothetical protein	NA	NA	NA	NA
WP_125353930.1\|2462862_2463081_+	TraR/DksA family transcriptional regulator	A0A0N7C211	Escherichia_phage	7.1e-18	61.1
WP_125353929.1\|2463080_2463320_+	DUF4222 domain-containing protein	Q6H9Z8	Enterobacteria_phage	3.7e-12	50.0
WP_125353928.1\|2463325_2463538_-	hypothetical protein	NA	NA	NA	NA
WP_125353927.1\|2463790_2464036_+	excisionase family protein	S4TND0	Salmonella_phage	1.1e-32	80.8
WP_125353926.1\|2464088_2465390_+	DUF3596 domain-containing protein	S4TSP2	Salmonella_phage	5.0e-159	62.4

DBSCAN-SWA_5

2540615 : 2596991

Salmonella_phage(17.65%)

plate,protease,integrase,terminase,tail,portal,tRNA,transposase

attL 2558861:2558877|attR 2590842:2590858

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_125355228.1\|2540615_2541635_+\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_110507932.1\|2541723_2544399_-	aconitate hydratase AcnA	NA	NA	NA	NA
WP_174081330.1\|2544652_2545696_-	late control protein	R9TNM7	Vibrio_phage	7.8e-30	31.8
WP_168713891.1\|2545699_2545906_-\|tail	tail protein X	NA	NA	NA	NA
WP_174081331.1\|2545916_2547575_-	hypothetical protein	R9TRP8	Vibrio_phage	3.5e-24	32.6
WP_125355869.1\|2547690_2547978_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_125355871.1\|2548138_2549197_-	HNH endonuclease	A0A1S6KZY3	Salmonella_phage	6.1e-14	32.3
WP_125355873.1\|2549520_2550234_-	hypothetical protein	NA	NA	NA	NA
WP_125355874.1\|2550487_2550997_-\|tail	phage major tail tube protein	A0A1B2LRS4	Wolbachia_phage	8.8e-11	30.3
WP_125355876.1\|2551009_2552503_-\|tail	phage tail sheath subtilisin-like domain-containing protein	R9TMQ0	Vibrio_phage	1.4e-69	35.4
WP_159465391.1\|2552559_2552733_-	hypothetical protein	NA	NA	NA	NA
WP_168713905.1\|2552729_2552900_-	hypothetical protein	NA	NA	NA	NA
WP_125355878.1\|2552896_2553733_-	peptidoglycan-binding protein	D6QWP0	uncultured_phage	7.9e-33	52.7
WP_168713906.1\|2553746_2554178_-\|tail	tail fiber assembly protein	U5P083	Shigella_phage	5.0e-23	43.3
WP_174081332.1\|2554179_2555655_-\|tail	phage tail protein	A0A193GYM0	Enterobacter_phage	7.2e-21	37.4
WP_174081333.1\|2555647_2556187_-\|tail	phage tail protein I	A0A088FVH1	Escherichia_phage	2.3e-33	39.2
WP_174081334.1\|2556161_2557088_-\|plate	baseplate J/gp47 family protein	A0A193GYM8	Enterobacter_phage	7.1e-67	47.2
WP_125351740.1\|2557084_2557420_-	GPW/gp25 family protein	D4HTV2	Vibrio_phage	3.4e-19	43.2
WP_159465397.1\|2557444_2558059_-\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
WP_174081335.1\|2558051_2558669_-\|tail	phage tail protein	NA	NA	NA	NA
WP_174081336.1\|2558665_2559172_-\|tail	phage major tail tube protein	NA	NA	NA	NA
2558861:2558877	attL	NA	NA	NA	NA
WP_174081337.1\|2559171_2559738_-	hypothetical protein	NA	NA	NA	NA
WP_125351745.1\|2559734_2560343_-	hypothetical protein	R9TR34	Vibrio_phage	4.1e-15	29.9
WP_174081338.1\|2560339_2560696_-	hypothetical protein	NA	NA	NA	NA
WP_125351747.1\|2560695_2561025_-	DUF2190 family protein	Q9EYD5	Enterobacteria_phage	6.5e-07	34.3
WP_174081432.1\|2561088_2563092_-\|protease	Clp protease ClpP	K7PKX4	Enterobacterial_phage	1.8e-176	49.1
WP_125351748.1\|2563084_2564617_-\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	4.4e-138	51.9
WP_125351749.1\|2564616_2564835_-	hypothetical protein	NA	NA	NA	NA
WP_174081433.1\|2564836_2566942_-\|terminase	phage terminase large subunit family protein	A0A291AWY5	Escherichia_phage	1.2e-298	70.9
WP_174081339.1\|2566941_2567433_-	DUF1441 family protein	A0A291AWV8	Escherichia_phage	4.3e-55	69.9
WP_174081340.1\|2567609_2568224_-	hypothetical protein	K7PGW6	Enterobacterial_phage	4.1e-71	65.6
WP_174081341.1\|2568205_2569663_-	glycosyltransferase family 2 protein	S4TSQ9	Salmonella_phage	1.6e-219	72.6
WP_047043763.1\|2569761_2569944_+	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_174081342.1\|2569968_2570400_+	type II toxin-antitoxin system HicB family antitoxin	A0A0R6PJ17	Moraxella_phage	2.4e-17	35.2
WP_125355697.1\|2570419_2571451_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_125355278.1\|2571588_2571807_-	hypothetical protein	NA	NA	NA	NA
WP_125355279.1\|2571805_2572246_+	hypothetical protein	NA	NA	NA	NA
WP_125355282.1\|2572506_2573352_-	cell envelope biogenesis protein OmpA	NA	NA	NA	NA
WP_125355280.1\|2573450_2574332_-	cell envelope biogenesis protein OmpA	NA	NA	NA	NA
WP_125355281.1\|2574474_2575527_-	site-specific DNA-methyltransferase	Q8SBE2	Shigella_phage	3.1e-167	78.4
WP_125354763.1\|2576053_2576245_-	hypothetical protein	NA	NA	NA	NA
WP_125354764.1\|2576509_2577025_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_125354765.1\|2577190_2581210_-	ATP-binding protein	NA	NA	NA	NA
WP_125354766.1\|2581468_2582221_-	antitermination protein	A0A0M4S661	Salmonella_phage	4.1e-97	66.8
WP_125354767.1\|2582217_2582577_-	RusA family crossover junction endodeoxyribonuclease	K7P6W0	Enterobacteria_phage	1.3e-37	60.9
WP_125354768.1\|2582569_2582881_-	DUF968 domain-containing protein	C5IHK8	Burkholderia_virus	8.3e-20	54.0
WP_125354769.1\|2583432_2583690_-	lF-82	J9Q7T5	Salmonella_phage	1.2e-16	48.3
WP_125354770.1\|2583922_2584231_-	hypothetical protein	NA	NA	NA	NA
WP_125354771.1\|2584227_2584458_-	hypothetical protein	NA	NA	NA	NA
WP_125354772.1\|2584557_2585178_-	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	1.6e-35	40.3
WP_174081343.1\|2585198_2586176_-	primosomal protein I	A0A1C9IHW0	Salmonella_phage	4.1e-41	70.6
WP_125354773.1\|2586172_2586418_-	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_125354774.1\|2586432_2586882_-	hypothetical protein	NA	NA	NA	NA
WP_125354775.1\|2586881_2587121_-	transcriptional regulator	K7PHK4	Enterobacteria_phage	9.5e-08	49.2
WP_174081344.1\|2587199_2587607_+	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	7.2e-24	46.9
WP_125354776.1\|2587808_2588639_+	hypothetical protein	NA	NA	NA	NA
WP_125354777.1\|2588694_2588901_+	cell division protein FtsZ	G8C7T2	Escherichia_phage	3.1e-15	52.9
WP_125354873.1\|2589091_2589352_+	DUF4224 domain-containing protein	Q8HAA9	Salmonella_phage	9.7e-06	35.1
WP_125354778.1\|2589320_2590331_+\|integrase	tyrosine-type recombinase/integrase	H9C152	Pectobacterium_phage	2.2e-122	63.4
WP_110507931.1\|2590981_2591143_-	YmiA family putative membrane protein	NA	NA	NA	NA
2590842:2590858	attR	NA	NA	NA	NA
WP_097161090.1\|2591467_2592442_-	HTH-type transcriptional regulator CysB	NA	NA	NA	NA
WP_110507929.1\|2592636_2595237_-	type I DNA topoisomerase	A0A2K9L1Q2	Tupanvirus	3.5e-87	34.1
WP_125354779.1\|2595661_2595913_+	YciN family protein	NA	NA	NA	NA
WP_125354780.1\|2595944_2596991_-\|protease	protease SohB	A0A2H4UUF9	Bodo_saltans_virus	1.6e-19	30.3

DBSCAN-SWA_6

2889105 : 2899597

uncultured_Caudovirales_phage(25.0%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_125355646.1\|2889105_2890308_+	nicotinate phosphoribosyltransferase	A0A2L0UZQ6	Agrobacterium_phage	4.2e-43	31.1
WP_110509884.1\|2890479_2891880_+\|tRNA	asparagine--tRNA ligase	A0A167RLM0	Powai_lake_megavirus	8.5e-80	35.4
WP_168713900.1\|2892486_2893659_+	porin	Q1MVN1	Enterobacteria_phage	4.7e-100	51.5
WP_125355650.1\|2893831_2894119_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A2H4JBF4	uncultured_Caudovirales_phage	7.3e-31	68.4
WP_125355652.1\|2894118_2894358_-	type II toxin-antitoxin system antitoxin RelB	A0A2H4JBG1	uncultured_Caudovirales_phage	4.1e-19	55.7
WP_056780970.1\|2894564_2895155_+	GrpB family protein	A0A2K5B2B6	Erysipelothrix_phage	6.4e-13	33.3
WP_125355658.1\|2895251_2895701_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_125355654.1\|2895875_2896346_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_125355656.1\|2896467_2897100_+	Vat family streptogramin A O-acetyltransferase	M1I2A5	Paramecium_bursaria_Chlorella_virus	4.0e-13	29.9
WP_125355789.1\|2898432_2899597_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	8.3e-73	49.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP054057

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1704 : 56205

Stx2-converting_phage(43.75%)

plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_125355789.1\|1704_2869_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	8.3e-73	49.5
WP_168713910.1\|5259_5649_+\|transposase	transposase	B6DZU5	Stx2-converting_phage	1.6e-60	90.7
WP_052908738.1\|5645_5993_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	8.2e-61	97.4
WP_174081175.1\|6042_7578_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.9e-266	89.6
WP_168713897.1\|7948_8575_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_168713896.1\|9109_9508_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_125355465.1\|12467_13579_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	7.2e-50	41.5
WP_125355463.1\|13993_14554_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_125355461.1\|14622_15147_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_125355459.1\|15178_17767_+	outer membrane usher protein	NA	NA	NA	NA
WP_125355457.1\|17849_18584_+	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_125355455.1\|18639_19230_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_125355453.1\|19238_19739_+	hypothetical protein	NA	NA	NA	NA
WP_125355451.1\|19754_20255_+	fimbrial protein	NA	NA	NA	NA
WP_125355449.1\|20267_20831_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_125355447.1\|20878_21652_+	hypothetical protein	NA	NA	NA	NA
WP_168713895.1\|21815_21923_+	hypothetical protein	NA	NA	NA	NA
WP_174081177.1\|22137_23895_+	O-antigen ligase family protein	NA	NA	NA	NA
WP_168713898.1\|23919_24255_+	hypothetical protein	A0A222YXE6	Synechococcus_phage	1.1e-06	29.8
WP_125355441.1\|24248_25019_+	NTP transferase domain-containing protein	A0A1D8KNV9	Synechococcus_phage	6.5e-50	42.3
WP_148098784.1\|25015_26725_+	hypothetical protein	NA	NA	NA	NA
WP_125355437.1\|26728_27211_+	hypothetical protein	NA	NA	NA	NA
WP_125355435.1\|27207_28221_+	hypothetical protein	NA	NA	NA	NA
WP_125355433.1\|28232_29048_+	ABC transporter permease	NA	NA	NA	NA
WP_125355431.1\|29044_29758_+	ABC transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	3.0e-09	24.3
WP_125355429.1\|29786_30428_+	hypothetical protein	NA	NA	NA	NA
WP_125355428.1\|30420_31056_+	HAD family phosphatase	M1H491	Acanthocystis_turfacea_Chlorella_virus	2.3e-40	44.5
WP_125355426.1\|31052_31478_+	hypothetical protein	NA	NA	NA	NA
WP_125355424.1\|32199_32820_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_125355789.1\|33885_35050_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	8.3e-73	49.5
WP_174081179.1\|35055_35532_+	hypothetical protein	NA	NA	NA	NA
WP_168713904.1\|35568_36366_+	hypothetical protein	NA	NA	NA	NA
WP_125355838.1\|36393_37170_+	thioredoxin domain-containing protein	NA	NA	NA	NA
WP_125355836.1\|37542_39081_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	5.2e-272	90.4
WP_042922210.1\|39129_39477_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	4.8e-61	98.3
WP_125355834.1\|39473_39866_-\|transposase	transposase	A0A0P0ZCV4	Stx2-converting_phage	5.5e-45	66.4
WP_125355832.1\|40627_41407_-	Sua5/YciO/YrdC/YwlC family protein	NA	NA	NA	NA
WP_125355844.1\|41625_42441_-	ABC transporter permease	NA	NA	NA	NA
WP_125355831.1\|42454_43285_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	4.0e-29	35.8
WP_125355829.1\|43271_44297_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_125355827.1\|44502_45054_-	chorismate mutase	NA	NA	NA	NA
WP_125355842.1\|45601_45895_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.5e-50	97.9
WP_125355789.1\|46701_47867_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	8.3e-73	49.5
WP_174081181.1\|47877_49119_+	hypothetical protein	NA	NA	NA	NA
WP_125353758.1\|49758_50373_+	hypothetical protein	NA	NA	NA	NA
WP_125353746.1\|50696_51182_-	hypothetical protein	NA	NA	NA	NA
WP_125353747.1\|51509_52121_-	DUF2913 family protein	NA	NA	NA	NA
WP_125353748.1\|52763_53261_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_125353749.1\|53298_54849_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_125353750.1\|54867_56205_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA

DBSCAN-SWA_2

76205 : 138815

Shigella_phage(44.44%)

plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_125354378.1\|76205_77969_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_125354379.1\|77923_79027_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_168713861.1\|79007_79544_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_125354381.1\|79536_79989_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_125354382.1\|80010_80484_+	hypothetical protein	NA	NA	NA	NA
WP_125354383.1\|80532_81882_+	type VI secretion system ImpA family N-terminal domain-containing protein	NA	NA	NA	NA
WP_125354384.1\|81885_82650_+	hypothetical protein	NA	NA	NA	NA
WP_125354385.1\|83132_84203_+	alkene reductase	NA	NA	NA	NA
WP_125352770.1\|87159_88267_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	3.6e-49	42.9
WP_125352772.1\|88480_88768_+	hypothetical protein	NA	NA	NA	NA
WP_125352773.1\|89119_89395_-	hypothetical protein	NA	NA	NA	NA
WP_125352775.1\|89822_90896_-	butyrate kinase	NA	NA	NA	NA
WP_125352777.1\|90892_91807_-	phosphate acetytransferase	NA	NA	NA	NA
WP_125352779.1\|91852_92590_-	beta-ketoacyl-ACP reductase	Q06VL0	Trichoplusia_ni_ascovirus	1.1e-17	29.0
WP_125352781.1\|92632_93820_-	acetyl-CoA C-acetyltransferase	NA	NA	NA	NA
WP_168713832.1\|93910_94552_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_174081174.1\|97055_97367_-	hypothetical protein	NA	NA	NA	NA
WP_125355697.1\|97347_98379_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_125355083.1\|99584_100208_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_125355084.1\|100271_100664_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_125355085.1\|100822_103936_-	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	1.7e-43	21.4
WP_125355094.1\|103979_105080_-	efflux RND transporter periplasmic adaptor subunit	S5VL44	Leptospira_phage	1.7e-06	22.6
WP_168713886.1\|105387_105564_+	hypothetical protein	NA	NA	NA	NA
WP_125355086.1\|105799_106639_+	small-conductance mechanosensitive channel MscS	NA	NA	NA	NA
WP_125355087.1\|106859_108034_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	4.7e-132	71.9
WP_125355088.1\|110226_110733_+	DUF417 family protein	NA	NA	NA	NA
WP_168713887.1\|110761_112018_+	beta-propeller fold lactonase family protein	NA	NA	NA	NA
WP_125355090.1\|112188_112971_+	hypothetical protein	NA	NA	NA	NA
WP_125355091.1\|112970_113522_+	hypothetical protein	NA	NA	NA	NA
WP_125355092.1\|113558_113825_+	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_125355093.1\|113875_114730_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	2.3e-80	55.8
WP_174081188.1\|114726_115038_-\|transposase	transposase	U5P4I9	Shigella_phage	3.5e-10	45.3
WP_125355789.1\|115048_116213_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	8.3e-73	49.5
WP_174081190.1\|116443_116647_-	hypothetical protein	NA	NA	NA	NA
WP_125354385.1\|117727_118798_+	alkene reductase	NA	NA	NA	NA
WP_125355882.1\|119594_120620_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_125355884.1\|120789_121944_-	low temperature requirement protein A	NA	NA	NA	NA
WP_168713907.1\|124008_124482_-	conjugal transfer protein TraF	NA	NA	NA	NA
WP_125355913.1\|127749_127965_-	hypothetical protein	NA	NA	NA	NA
WP_125355911.1\|128412_128571_-	type I toxin-antitoxin system Hok family toxin	NA	NA	NA	NA
WP_125355910.1\|128777_129044_+	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_125355908.1\|129031_129523_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_125355906.1\|129948_130728_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_125355904.1\|130856_131831_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_001567383.1\|132158_132425_+	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_125355976.1\|132521_133079_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_125355974.1\|133291_133552_+	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_125355972.1\|133582_134095_+	DUF417 family protein	NA	NA	NA	NA
WP_021243014.1\|134162_134300_+	hypothetical protein	NA	NA	NA	NA
WP_174081191.1\|134323_134785_+	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA
WP_001567377.1\|134774_135269_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA
WP_125355571.1\|135852_137193_-\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_125355569.1\|137282_138815_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.1e-48	39.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP054058

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP054057

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection