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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP022905 Staphylococcus aureus strain 628 chromosome, complete genome 11 crisprs cas3,DEDDh,csa3,DinG,RT,WYL 10 3 11 2

Results visualization

1. NZ_CP022905
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP022905_1 170181-170265 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP022905_2 429971-430072 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP022905_3 787356-787438 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP022905_4 830143-830221 Unclear NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP022905_5 835598-835867 Unclear NA
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP022905_6 897427-897508 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP022905_7 984211-984292 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP022905_8 1420896-1420980 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP022905_9 2292165-2292245 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP022905_10 2304486-2304571 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP022905_11 2412529-2412609 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP022905_1 1.1|170207|33|NZ_CP022905|CRISPRCasFinder 170207-170239 33 NZ_CP022905.1 1693617-1693649 0 1.0
NZ_CP022905_4 4.1|830167|31|NZ_CP022905|CRISPRCasFinder 830167-830197 31 NZ_CP022905.1 295083-295113 0 1.0
NZ_CP022905_5 5.1|835634|22|NZ_CP022905|CRT 835634-835655 22 NZ_CP022905.1 170168-170189 0 1.0
NZ_CP022905_5 5.1|835634|22|NZ_CP022905|CRT 835634-835655 22 NZ_CP022905.1 295008-295029 0 1.0
NZ_CP022905_5 5.1|835634|22|NZ_CP022905|CRT 835634-835655 22 NZ_CP022905.1 295118-295139 0 1.0
NZ_CP022905_5 5.1|835634|22|NZ_CP022905|CRT 835634-835655 22 NZ_CP022905.1 660644-660665 0 1.0
NZ_CP022905_5 5.1|835634|22|NZ_CP022905|CRT 835634-835655 22 NZ_CP022905.1 786397-786418 0 1.0
NZ_CP022905_5 5.1|835634|22|NZ_CP022905|CRT 835634-835655 22 NZ_CP022905.1 897500-897521 0 1.0
NZ_CP022905_5 5.1|835634|22|NZ_CP022905|CRT 835634-835655 22 NZ_CP022905.1 1086559-1086580 0 1.0
NZ_CP022905_5 5.1|835634|22|NZ_CP022905|CRT 835634-835655 22 NZ_CP022905.1 1406349-1406370 0 1.0
NZ_CP022905_5 5.1|835634|22|NZ_CP022905|CRT 835634-835655 22 NZ_CP022905.1 1420883-1420904 0 1.0
NZ_CP022905_5 5.1|835634|22|NZ_CP022905|CRT 835634-835655 22 NZ_CP022905.1 1693725-1693746 0 1.0
NZ_CP022905_5 5.3|835751|22|NZ_CP022905|CRT 835751-835772 22 NZ_CP022905.1 170168-170189 0 1.0
NZ_CP022905_5 5.3|835751|22|NZ_CP022905|CRT 835751-835772 22 NZ_CP022905.1 295008-295029 0 1.0
NZ_CP022905_5 5.3|835751|22|NZ_CP022905|CRT 835751-835772 22 NZ_CP022905.1 295118-295139 0 1.0
NZ_CP022905_5 5.3|835751|22|NZ_CP022905|CRT 835751-835772 22 NZ_CP022905.1 660644-660665 0 1.0
NZ_CP022905_5 5.3|835751|22|NZ_CP022905|CRT 835751-835772 22 NZ_CP022905.1 786397-786418 0 1.0
NZ_CP022905_5 5.3|835751|22|NZ_CP022905|CRT 835751-835772 22 NZ_CP022905.1 897500-897521 0 1.0
NZ_CP022905_5 5.3|835751|22|NZ_CP022905|CRT 835751-835772 22 NZ_CP022905.1 1086559-1086580 0 1.0
NZ_CP022905_5 5.3|835751|22|NZ_CP022905|CRT 835751-835772 22 NZ_CP022905.1 1406349-1406370 0 1.0
NZ_CP022905_5 5.3|835751|22|NZ_CP022905|CRT 835751-835772 22 NZ_CP022905.1 1420883-1420904 0 1.0
NZ_CP022905_5 5.3|835751|22|NZ_CP022905|CRT 835751-835772 22 NZ_CP022905.1 1693725-1693746 0 1.0
NZ_CP022905_7 7.1|984235|34|NZ_CP022905|CRISPRCasFinder 984235-984268 34 NZ_CP022905.1 830142-830175 0 1.0
NZ_CP022905_7 7.1|984235|34|NZ_CP022905|CRISPRCasFinder 984235-984268 34 NZ_CP022905.1 1906633-1906666 0 1.0
NZ_CP022905_4 4.1|830167|31|NZ_CP022905|CRISPRCasFinder 830167-830197 31 NZ_CP022905.1 295028-295058 1 0.968
NZ_CP022905_4 4.1|830167|31|NZ_CP022905|CRISPRCasFinder 830167-830197 31 NZ_CP022905.1 1386468-1386498 1 0.968
NZ_CP022905_5 5.1|835634|22|NZ_CP022905|CRT 835634-835655 22 NZ_CP022905.1 1386389-1386410 1 0.955
NZ_CP022905_5 5.1|835634|22|NZ_CP022905|CRT 835634-835655 22 NZ_CP022905.1 1386622-1386643 1 0.955
NZ_CP022905_5 5.1|835634|22|NZ_CP022905|CRT 835634-835655 22 NZ_CP022905.1 2176840-2176861 1 0.955
NZ_CP022905_5 5.2|835692|23|NZ_CP022905|CRT 835692-835714 23 NZ_CP022905.1 787347-787369 1 0.957
NZ_CP022905_5 5.2|835692|23|NZ_CP022905|CRT 835692-835714 23 NZ_CP022905.1 787625-787647 1 0.957
NZ_CP022905_5 5.2|835692|23|NZ_CP022905|CRT 835692-835714 23 NZ_CP022905.1 1086500-1086522 1 0.957
NZ_CP022905_5 5.2|835692|23|NZ_CP022905|CRT 835692-835714 23 NZ_CP022905.1 1693608-1693630 1 0.957
NZ_CP022905_5 5.2|835692|23|NZ_CP022905|CRT 835692-835714 23 NZ_CP022905.1 2401700-2401722 1 0.957
NZ_CP022905_5 5.3|835751|22|NZ_CP022905|CRT 835751-835772 22 NZ_CP022905.1 1386389-1386410 1 0.955
NZ_CP022905_5 5.3|835751|22|NZ_CP022905|CRT 835751-835772 22 NZ_CP022905.1 1386622-1386643 1 0.955
NZ_CP022905_5 5.3|835751|22|NZ_CP022905|CRT 835751-835772 22 NZ_CP022905.1 2176840-2176861 1 0.955
NZ_CP022905_5 5.4|835809|23|NZ_CP022905|CRT 835809-835831 23 NZ_CP022905.1 787347-787369 1 0.957
NZ_CP022905_5 5.4|835809|23|NZ_CP022905|CRT 835809-835831 23 NZ_CP022905.1 787625-787647 1 0.957
NZ_CP022905_5 5.4|835809|23|NZ_CP022905|CRT 835809-835831 23 NZ_CP022905.1 1086500-1086522 1 0.957
NZ_CP022905_5 5.4|835809|23|NZ_CP022905|CRT 835809-835831 23 NZ_CP022905.1 1693608-1693630 1 0.957
NZ_CP022905_5 5.4|835809|23|NZ_CP022905|CRT 835809-835831 23 NZ_CP022905.1 2401700-2401722 1 0.957
NZ_CP022905_6 6.1|897451|34|NZ_CP022905|CRISPRCasFinder 897451-897484 34 NZ_CP022905.1 1693617-1693650 1 0.971
NZ_CP022905_7 7.1|984235|34|NZ_CP022905|CRISPRCasFinder 984235-984268 34 NZ_CP022905.1 1294349-1294382 1 0.971
NZ_CP022905_8 8.1|1420922|33|NZ_CP022905|CRISPRCasFinder 1420922-1420954 33 NZ_CP022905.1 1693617-1693649 1 0.97
NZ_CP022905_11 11.1|2412554|31|NZ_CP022905|CRISPRCasFinder 2412554-2412584 31 NZ_CP022905.1 842886-842916 1 0.968
NZ_CP022905_1 1.1|170207|33|NZ_CP022905|CRISPRCasFinder 170207-170239 33 NZ_CP022905.1 1605295-1605327 2 0.939
NZ_CP022905_5 5.2|835692|23|NZ_CP022905|CRT 835692-835714 23 NZ_CP022905.1 984189-984211 2 0.913
NZ_CP022905_5 5.2|835692|23|NZ_CP022905|CRT 835692-835714 23 NZ_CP022905.1 1605314-1605336 2 0.913
NZ_CP022905_5 5.4|835809|23|NZ_CP022905|CRT 835809-835831 23 NZ_CP022905.1 984189-984211 2 0.913
NZ_CP022905_5 5.4|835809|23|NZ_CP022905|CRT 835809-835831 23 NZ_CP022905.1 1605314-1605336 2 0.913
NZ_CP022905_7 7.1|984235|34|NZ_CP022905|CRISPRCasFinder 984235-984268 34 NZ_CP022905.1 1689243-1689276 2 0.941
NZ_CP022905_7 7.1|984235|34|NZ_CP022905|CRISPRCasFinder 984235-984268 34 NZ_CP022905.1 2870555-2870588 2 0.941
NZ_CP022905_11 11.1|2412554|31|NZ_CP022905|CRISPRCasFinder 2412554-2412584 31 NZ_CP022905.1 70386-70416 2 0.935
NZ_CP022905_11 11.1|2412554|31|NZ_CP022905|CRISPRCasFinder 2412554-2412584 31 NZ_CP022905.1 374957-374987 2 0.935
NZ_CP022905_11 11.1|2412554|31|NZ_CP022905|CRISPRCasFinder 2412554-2412584 31 NZ_CP022905.1 660699-660729 2 0.935
NZ_CP022905_11 11.1|2412554|31|NZ_CP022905|CRISPRCasFinder 2412554-2412584 31 NZ_CP022905.1 897762-897792 2 0.935
NZ_CP022905_11 11.1|2412554|31|NZ_CP022905|CRISPRCasFinder 2412554-2412584 31 NZ_CP022905.1 1087898-1087928 2 0.935
NZ_CP022905_11 11.1|2412554|31|NZ_CP022905|CRISPRCasFinder 2412554-2412584 31 NZ_CP022905.1 1406286-1406316 2 0.935
NZ_CP022905_11 11.1|2412554|31|NZ_CP022905|CRISPRCasFinder 2412554-2412584 31 NZ_CP022905.1 1605253-1605283 2 0.935
NZ_CP022905_11 11.1|2412554|31|NZ_CP022905|CRISPRCasFinder 2412554-2412584 31 NZ_CP022905.1 1693661-1693691 2 0.935
NZ_CP022905_11 11.1|2412554|31|NZ_CP022905|CRISPRCasFinder 2412554-2412584 31 NZ_CP022905.1 1899703-1899733 2 0.935
NZ_CP022905_11 11.1|2412554|31|NZ_CP022905|CRISPRCasFinder 2412554-2412584 31 NZ_CP022905.1 2401753-2401783 2 0.935
NZ_CP022905_11 11.1|2412554|31|NZ_CP022905|CRISPRCasFinder 2412554-2412584 31 NZ_CP022905.1 2577298-2577328 2 0.935

1. spacer 1.1|170207|33|NZ_CP022905|CRISPRCasFinder matches to position: 1693617-1693649, mismatch: 0, identity: 1.0

tgggccccaacaaagagaaattggattcccaat	CRISPR spacer
tgggccccaacaaagagaaattggattcccaat	Protospacer
*********************************

2. spacer 4.1|830167|31|NZ_CP022905|CRISPRCasFinder matches to position: 295083-295113, mismatch: 0, identity: 1.0

ctgtgttggggccccgccaacttgcattgcc	CRISPR spacer
ctgtgttggggccccgccaacttgcattgcc	Protospacer
*******************************

3. spacer 5.1|835634|22|NZ_CP022905|CRT matches to position: 170168-170189, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

4. spacer 5.1|835634|22|NZ_CP022905|CRT matches to position: 295008-295029, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

5. spacer 5.1|835634|22|NZ_CP022905|CRT matches to position: 295118-295139, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

6. spacer 5.1|835634|22|NZ_CP022905|CRT matches to position: 660644-660665, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

7. spacer 5.1|835634|22|NZ_CP022905|CRT matches to position: 786397-786418, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

8. spacer 5.1|835634|22|NZ_CP022905|CRT matches to position: 897500-897521, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

9. spacer 5.1|835634|22|NZ_CP022905|CRT matches to position: 1086559-1086580, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

10. spacer 5.1|835634|22|NZ_CP022905|CRT matches to position: 1406349-1406370, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

11. spacer 5.1|835634|22|NZ_CP022905|CRT matches to position: 1420883-1420904, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

12. spacer 5.1|835634|22|NZ_CP022905|CRT matches to position: 1693725-1693746, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

13. spacer 5.3|835751|22|NZ_CP022905|CRT matches to position: 170168-170189, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

14. spacer 5.3|835751|22|NZ_CP022905|CRT matches to position: 295008-295029, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

15. spacer 5.3|835751|22|NZ_CP022905|CRT matches to position: 295118-295139, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

16. spacer 5.3|835751|22|NZ_CP022905|CRT matches to position: 660644-660665, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

17. spacer 5.3|835751|22|NZ_CP022905|CRT matches to position: 786397-786418, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

18. spacer 5.3|835751|22|NZ_CP022905|CRT matches to position: 897500-897521, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

19. spacer 5.3|835751|22|NZ_CP022905|CRT matches to position: 1086559-1086580, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

20. spacer 5.3|835751|22|NZ_CP022905|CRT matches to position: 1406349-1406370, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

21. spacer 5.3|835751|22|NZ_CP022905|CRT matches to position: 1420883-1420904, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

22. spacer 5.3|835751|22|NZ_CP022905|CRT matches to position: 1693725-1693746, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

23. spacer 7.1|984235|34|NZ_CP022905|CRISPRCasFinder matches to position: 830142-830175, mismatch: 0, identity: 1.0

ccaacacagagaatttcgaaaagaaattctacaa	CRISPR spacer
ccaacacagagaatttcgaaaagaaattctacaa	Protospacer
**********************************

24. spacer 7.1|984235|34|NZ_CP022905|CRISPRCasFinder matches to position: 1906633-1906666, mismatch: 0, identity: 1.0

ccaacacagagaatttcgaaaagaaattctacaa	CRISPR spacer
ccaacacagagaatttcgaaaagaaattctacaa	Protospacer
**********************************

25. spacer 4.1|830167|31|NZ_CP022905|CRISPRCasFinder matches to position: 295028-295058, mismatch: 1, identity: 0.968

ctgtgttggggccccgccaacttgcattgcc	CRISPR spacer
ctgtgttggggccccgccaacttgcattacc	Protospacer
****************************.**

26. spacer 4.1|830167|31|NZ_CP022905|CRISPRCasFinder matches to position: 1386468-1386498, mismatch: 1, identity: 0.968

ctgtgttggggccccgccaacttgcattgcc	CRISPR spacer
ctgtgttggggccccgccaacttccattgcc	Protospacer
*********************** *******

27. spacer 5.1|835634|22|NZ_CP022905|CRT matches to position: 1386389-1386410, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttctttacgaaa	Protospacer
**************** *****

28. spacer 5.1|835634|22|NZ_CP022905|CRT matches to position: 1386622-1386643, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttctttacgaaa	Protospacer
**************** *****

29. spacer 5.1|835634|22|NZ_CP022905|CRT matches to position: 2176840-2176861, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttagaaa	Protospacer
***************** ****

30. spacer 5.2|835692|23|NZ_CP022905|CRT matches to position: 787347-787369, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

31. spacer 5.2|835692|23|NZ_CP022905|CRT matches to position: 787625-787647, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

32. spacer 5.2|835692|23|NZ_CP022905|CRT matches to position: 1086500-1086522, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

33. spacer 5.2|835692|23|NZ_CP022905|CRT matches to position: 1693608-1693630, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

34. spacer 5.2|835692|23|NZ_CP022905|CRT matches to position: 2401700-2401722, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

35. spacer 5.3|835751|22|NZ_CP022905|CRT matches to position: 1386389-1386410, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttctttacgaaa	Protospacer
**************** *****

36. spacer 5.3|835751|22|NZ_CP022905|CRT matches to position: 1386622-1386643, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttctttacgaaa	Protospacer
**************** *****

37. spacer 5.3|835751|22|NZ_CP022905|CRT matches to position: 2176840-2176861, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttagaaa	Protospacer
***************** ****

38. spacer 5.4|835809|23|NZ_CP022905|CRT matches to position: 787347-787369, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

39. spacer 5.4|835809|23|NZ_CP022905|CRT matches to position: 787625-787647, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

40. spacer 5.4|835809|23|NZ_CP022905|CRT matches to position: 1086500-1086522, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

41. spacer 5.4|835809|23|NZ_CP022905|CRT matches to position: 1693608-1693630, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

42. spacer 5.4|835809|23|NZ_CP022905|CRT matches to position: 2401700-2401722, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

43. spacer 6.1|897451|34|NZ_CP022905|CRISPRCasFinder matches to position: 1693617-1693650, mismatch: 1, identity: 0.971

attgagaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
****.*****************************

44. spacer 7.1|984235|34|NZ_CP022905|CRISPRCasFinder matches to position: 1294349-1294382, mismatch: 1, identity: 0.971

ccaacacagagaatttcgaaaagaaattctacaa	CRISPR spacer
ccaacacaaagaatttcgaaaagaaattctacaa	Protospacer
********.*************************

45. spacer 8.1|1420922|33|NZ_CP022905|CRISPRCasFinder matches to position: 1693617-1693649, mismatch: 1, identity: 0.97

tgggccccaacacagagaaattggattcccaat	CRISPR spacer
tgggccccaacaaagagaaattggattcccaat	Protospacer
************ ********************

46. spacer 11.1|2412554|31|NZ_CP022905|CRISPRCasFinder matches to position: 842886-842916, mismatch: 1, identity: 0.968

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
***********************.*******

47. spacer 1.1|170207|33|NZ_CP022905|CRISPRCasFinder matches to position: 1605295-1605327, mismatch: 2, identity: 0.939

tgggccccaacaaagagaaattggattcccaat	CRISPR spacer
tggaccccaacaaagagaaattgtattcccaat	Protospacer
***.******************* *********

48. spacer 5.2|835692|23|NZ_CP022905|CRT matches to position: 984189-984211, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgttgaaattgggaatccaat	Protospacer
***** ********.********

49. spacer 5.2|835692|23|NZ_CP022905|CRT matches to position: 1605314-1605336, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatacaat	Protospacer
**************.*** ****

50. spacer 5.4|835809|23|NZ_CP022905|CRT matches to position: 984189-984211, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgttgaaattgggaatccaat	Protospacer
***** ********.********

51. spacer 5.4|835809|23|NZ_CP022905|CRT matches to position: 1605314-1605336, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatacaat	Protospacer
**************.*** ****

52. spacer 7.1|984235|34|NZ_CP022905|CRISPRCasFinder matches to position: 1689243-1689276, mismatch: 2, identity: 0.941

ccaacacagagaatttcgaaaagaaattctacaa	CRISPR spacer
ccaacacagagaatttcgataagaaattccacaa	Protospacer
******************* *********.****

53. spacer 7.1|984235|34|NZ_CP022905|CRISPRCasFinder matches to position: 2870555-2870588, mismatch: 2, identity: 0.941

ccaacacagagaatttcgaaaagaaattctacaa	CRISPR spacer
ccaacaaaaagaatttcgaaaagaaattctacaa	Protospacer
****** *.*************************

54. spacer 11.1|2412554|31|NZ_CP022905|CRISPRCasFinder matches to position: 70386-70416, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

55. spacer 11.1|2412554|31|NZ_CP022905|CRISPRCasFinder matches to position: 374957-374987, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

56. spacer 11.1|2412554|31|NZ_CP022905|CRISPRCasFinder matches to position: 660699-660729, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

57. spacer 11.1|2412554|31|NZ_CP022905|CRISPRCasFinder matches to position: 897762-897792, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

58. spacer 11.1|2412554|31|NZ_CP022905|CRISPRCasFinder matches to position: 1087898-1087928, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

59. spacer 11.1|2412554|31|NZ_CP022905|CRISPRCasFinder matches to position: 1406286-1406316, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

60. spacer 11.1|2412554|31|NZ_CP022905|CRISPRCasFinder matches to position: 1605253-1605283, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

61. spacer 11.1|2412554|31|NZ_CP022905|CRISPRCasFinder matches to position: 1693661-1693691, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

62. spacer 11.1|2412554|31|NZ_CP022905|CRISPRCasFinder matches to position: 1899703-1899733, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

63. spacer 11.1|2412554|31|NZ_CP022905|CRISPRCasFinder matches to position: 2401753-2401783, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

64. spacer 11.1|2412554|31|NZ_CP022905|CRISPRCasFinder matches to position: 2577298-2577328, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP022905_5 5.2|835692|23|NZ_CP022905|CRT 835692-835714 23 AP014226 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, *** SEQUENCING IN PROGRESS *** 28490-28512 3 0.87
NZ_CP022905_5 5.2|835692|23|NZ_CP022905|CRT 835692-835714 23 AP014225 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, *** SEQUENCING IN PROGRESS *** 24653-24675 3 0.87
NZ_CP022905_5 5.4|835809|23|NZ_CP022905|CRT 835809-835831 23 AP014226 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, *** SEQUENCING IN PROGRESS *** 28490-28512 3 0.87
NZ_CP022905_5 5.4|835809|23|NZ_CP022905|CRT 835809-835831 23 AP014225 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, *** SEQUENCING IN PROGRESS *** 24653-24675 3 0.87
NZ_CP022905_10 10.1|2304512|34|NZ_CP022905|CRISPRCasFinder 2304512-2304545 34 JN882286 Cronobacter phage vB_CsaP_GAP52, complete genome 23034-23067 8 0.765
NZ_CP022905_10 10.1|2304512|34|NZ_CP022905|CRISPRCasFinder 2304512-2304545 34 CP030544 Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence 7567-7600 8 0.765

1. spacer 5.2|835692|23|NZ_CP022905|CRT matches to AP014226 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

2. spacer 5.2|835692|23|NZ_CP022905|CRT matches to AP014225 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

3. spacer 5.4|835809|23|NZ_CP022905|CRT matches to AP014226 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

4. spacer 5.4|835809|23|NZ_CP022905|CRT matches to AP014225 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

5. spacer 10.1|2304512|34|NZ_CP022905|CRISPRCasFinder matches to JN882286 (Cronobacter phage vB_CsaP_GAP52, complete genome) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgcatatctttagctttatagcttttatatgct	Protospacer
******************** *.** .*  **  

6. spacer 10.1|2304512|34|NZ_CP022905|CRISPRCasFinder matches to CP030544 (Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgaataactttagctttattgttataaacagta	Protospacer
*** *** ****************   *** * .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 398446 : 461407 71 Staphylococcus_phage(70.0%) coat,terminase,transposase,integrase attL 399982:399999|attR 416253:416270
DBSCAN-SWA_2 765475 : 773296 10 Hokovirus(16.67%) NA NA
DBSCAN-SWA_3 788085 : 801748 13 uncultured_Caudovirales_phage(50.0%) transposase NA
DBSCAN-SWA_4 852600 : 869562 24 Staphylococcus_phage(81.25%) coat,terminase,transposase,integrase attL 853972:853987|attR 861370:861385
DBSCAN-SWA_5 977807 : 1062492 107 Staphylococcus_phage(90.79%) tail,integrase,terminase,portal,protease,capsid,transposase,head,holin attL 989503:989520|attR 1014041:1014058
DBSCAN-SWA_6 1122543 : 1232375 102 Staphylococcus_phage(92.86%) tRNA,protease,transposase NA
DBSCAN-SWA_7 1362266 : 1371309 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_8 1900612 : 1985535 108 Staphylococcus_phage(71.23%) tail,holin,tRNA,terminase,capsid,portal,transposase,head,plate NA
DBSCAN-SWA_9 2037339 : 2045812 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_10 2065810 : 2119538 54 Streptococcus_phage(28.57%) tRNA,bacteriocin,protease,transposase NA
DBSCAN-SWA_11 2744984 : 2774133 29 Streptococcus_phage(69.23%) transposase,integrase attL 2766936:2766955|attR 2774976:2774995
Click the colored protein region to show detailed information
Click the colored protein region to show detailed information
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_CP022905.1|WP_000642492.1|1978468_1978678_+|hypothetical-protein 1978468_1978678_+ 69 aa aa NA NA NA 1900612-1985535 yes
NZ_CP022905.1|WP_023487065.1|1978825_1979269_-|hypothetical-protein 1978825_1979269_- 147 aa aa NA NA NA 1900612-1985535 yes