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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP031248 Streptococcus pneumoniae strain M26365 chromosome, complete genome 3 crisprs DinG,cas3,PrimPol,DEDDh 0 0 157 0

Results visualization

1. NZ_CP031248
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP031248_1 419076-419155 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP031248_2 1387670-1387765 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP031248_3 1975910-1975993 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 5812 6 Planktothrix_phage(33.33%) NA NA
DBSCAN-SWA_2 9354 : 16113 8 Streptococcus_phage(50.0%) protease NA
DBSCAN-SWA_3 21590 : 32945 9 unidentified_phage(20.0%) tRNA NA
DBSCAN-SWA_4 36136 : 40374 5 Moumouvirus(33.33%) tRNA NA
DBSCAN-SWA_5 50170 : 50854 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_6 54117 : 57216 1 Choristoneura_rosaceana_nucleopolyhedrovirus(100.0%) NA NA
DBSCAN-SWA_7 75453 : 79386 4 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_8 84770 : 88554 2 Aureococcus_anophage(50.0%) NA NA
DBSCAN-SWA_9 91877 : 92720 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_10 98279 : 100150 2 Lactobacillus_phage(100.0%) NA NA
DBSCAN-SWA_11 105661 : 114500 12 Streptococcus_phage(42.86%) holin NA
DBSCAN-SWA_12 118028 : 130056 10 Bacillus_virus(28.57%) NA NA
DBSCAN-SWA_13 147860 : 157120 10 Mycoplasma_phage(40.0%) protease NA
DBSCAN-SWA_14 160230 : 174026 11 Streptococcus_phage(50.0%) tRNA NA
DBSCAN-SWA_15 188238 : 191713 2 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_16 194779 : 195034 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_17 201670 : 207506 5 Bacillus_phage(66.67%) NA NA
DBSCAN-SWA_18 211432 : 212943 2 Staphylococcus_phage(50.0%) transposase NA
DBSCAN-SWA_19 219013 : 224922 6 Staphylococcus_phage(33.33%) NA NA
DBSCAN-SWA_20 231802 : 242016 11 Enterobacteria_phage(25.0%) protease NA
DBSCAN-SWA_21 245779 : 247394 2 Indivirus(100.0%) holin NA
DBSCAN-SWA_22 252726 : 269567 17 Bacillus_phage(14.29%) NA NA
DBSCAN-SWA_23 276042 : 278419 2 Cyanophage(50.0%) NA NA
DBSCAN-SWA_24 287202 : 287754 1 Penguinpox_virus(100.0%) NA NA
DBSCAN-SWA_25 291912 : 300090 8 Bacillus_phage(40.0%) NA NA
DBSCAN-SWA_26 306189 : 308296 2 Catovirus(50.0%) NA NA
DBSCAN-SWA_27 312265 : 314896 2 Caulobacter_phage(50.0%) NA NA
DBSCAN-SWA_28 326737 : 330346 3 Enterococcus_phage(66.67%) NA NA
DBSCAN-SWA_29 338251 : 338905 1 Beluga_whale_alphaherpesvirus(100.0%) NA NA
DBSCAN-SWA_30 348574 : 358345 10 Streptococcus_phage(28.57%) transposase,integrase attL 342330:342345|attR 359189:359204
DBSCAN-SWA_31 362054 : 368031 5 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_32 373026 : 375255 2 Aeromonas_phage(50.0%) integrase attL 365901:365918|attR 383590:383607
DBSCAN-SWA_33 379744 : 381868 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_34 389205 : 389940 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_35 401164 : 422066 22 Streptococcus_phage(94.74%) integrase attL 400751:400766|attR 413180:413195
DBSCAN-SWA_36 430561 : 432784 2 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_37 440832 : 444483 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_38 448904 : 462310 19 Streptococcus_phage(87.5%) integrase attL 433251:433266|attR 470750:470765
DBSCAN-SWA_39 473484 : 482174 6 Ralstonia_phage(25.0%) NA NA
DBSCAN-SWA_40 494085 : 501187 7 Tupanvirus(33.33%) NA NA
DBSCAN-SWA_41 512622 : 516343 3 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_42 535102 : 549465 15 Anomala_cuprea_entomopoxvirus(16.67%) NA NA
DBSCAN-SWA_43 572012 : 578010 7 Enterococcus_phage(50.0%) NA NA
DBSCAN-SWA_44 587644 : 599335 12 Staphylococcus_phage(20.0%) NA NA
DBSCAN-SWA_45 602514 : 607771 5 Agrobacterium_phage(33.33%) NA NA
DBSCAN-SWA_46 611627 : 612596 1 Erwinia_phage(100.0%) NA NA
DBSCAN-SWA_47 616726 : 631533 16 Streptococcus_phage(58.33%) protease NA
DBSCAN-SWA_48 637891 : 642347 4 unidentified_phage(50.0%) transposase NA
DBSCAN-SWA_49 654316 : 657418 1 Streptomyces_phage(100.0%) NA NA
DBSCAN-SWA_50 661066 : 664417 1 Gordonia_phage(100.0%) NA NA
DBSCAN-SWA_51 668452 : 669946 1 Bodo_saltans_virus(100.0%) NA NA
DBSCAN-SWA_52 676334 : 678560 1 Mycobacterium_phage(100.0%) NA NA
DBSCAN-SWA_53 684945 : 693635 8 Stx2-converting_phage(20.0%) NA NA
DBSCAN-SWA_54 701912 : 706747 2 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_55 711011 : 719355 10 Staphylococcus_phage(33.33%) NA NA
DBSCAN-SWA_56 727311 : 732647 5 Enterococcus_phage(33.33%) protease NA
DBSCAN-SWA_57 740210 : 763637 22 Bacillus_virus(11.11%) tRNA NA
DBSCAN-SWA_58 772699 : 783084 9 Indivirus(16.67%) NA NA
DBSCAN-SWA_59 787509 : 791912 5 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_60 795596 : 800326 6 Streptococcus_phage(40.0%) protease NA
DBSCAN-SWA_61 806322 : 810548 2 Micromonas_sp._RCC1109_virus(50.0%) NA NA
DBSCAN-SWA_62 816027 : 817413 1 Pithovirus(100.0%) NA NA
DBSCAN-SWA_63 823219 : 824710 1 Catovirus(100.0%) tRNA NA
DBSCAN-SWA_64 828241 : 832421 6 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_65 837113 : 837755 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_66 844522 : 845491 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_67 850334 : 855744 5 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_68 862354 : 864046 1 Enterobacteria_phage(100.0%) NA NA
DBSCAN-SWA_69 870940 : 871498 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_70 893273 : 894266 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_71 914917 : 918175 2 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_72 923165 : 927537 4 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_73 931498 : 978041 43 Moumouvirus(14.29%) transposase,bacteriocin,protease,tRNA NA
DBSCAN-SWA_74 985221 : 986568 1 Streptococcus_phage(100.0%) transposase NA
DBSCAN-SWA_75 991409 : 997015 6 Staphylococcus_phage(25.0%) NA NA
DBSCAN-SWA_76 1000310 : 1002644 1 Enterococcus_phage(100.0%) NA NA
DBSCAN-SWA_77 1005744 : 1008386 3 Erysipelothrix_phage(50.0%) NA NA
DBSCAN-SWA_78 1020324 : 1021932 1 Only_Syngen_Nebraska_virus(100.0%) NA NA
DBSCAN-SWA_79 1027080 : 1028763 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_80 1055199 : 1058844 2 Streptococcus_phage(50.0%) transposase NA
DBSCAN-SWA_81 1066437 : 1067178 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_82 1071897 : 1073598 1 Yellowstone_lake_phycodnavirus(100.0%) NA NA
DBSCAN-SWA_83 1077207 : 1129092 56 Streptococcus_phage(12.5%) transposase,integrase,tRNA,protease,holin attL 1083407:1083442|attR 1114867:1114902
DBSCAN-SWA_84 1133209 : 1133806 1 Aeribacillus_phage(100.0%) NA NA
DBSCAN-SWA_85 1145116 : 1148559 4 Escherichia_phage(50.0%) NA NA
DBSCAN-SWA_86 1155132 : 1156104 1 Catovirus(100.0%) NA NA
DBSCAN-SWA_87 1160191 : 1163770 4 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_88 1168954 : 1171060 1 Enterobacteria_phage(100.0%) protease NA
DBSCAN-SWA_89 1176351 : 1176546 1 Thermoanaerobacterium_phage(100.0%) NA NA
DBSCAN-SWA_90 1203545 : 1204982 1 Pandoravirus(100.0%) NA NA
DBSCAN-SWA_91 1208655 : 1209210 1 Pneumococcus_phage(100.0%) NA NA
DBSCAN-SWA_92 1212345 : 1216124 3 Moraxella_phage(50.0%) NA NA
DBSCAN-SWA_93 1224020 : 1230597 2 Clostridium_phage(50.0%) NA NA
DBSCAN-SWA_94 1237559 : 1247512 8 Paramecium_bursaria_Chlorella_virus(25.0%) protease,tRNA NA
DBSCAN-SWA_95 1250739 : 1257927 4 Staphylococcus_phage(33.33%) tRNA NA
DBSCAN-SWA_96 1264868 : 1265600 1 Mycoplasma_phage(100.0%) NA NA
DBSCAN-SWA_97 1285814 : 1289307 3 Enterococcus_phage(100.0%) NA NA
DBSCAN-SWA_98 1297208 : 1358125 59 Streptococcus_phage(36.84%) protease,bacteriocin,tRNA,integrase attL 1301290:1301306|attR 1313484:1313500
DBSCAN-SWA_99 1367708 : 1367894 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_100 1380045 : 1385221 6 Enterococcus_phage(50.0%) NA NA
DBSCAN-SWA_101 1399874 : 1400573 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_102 1407011 : 1407776 1 Streptococcus_phi-m46.1-like_phage(100.0%) NA NA
DBSCAN-SWA_103 1422600 : 1441172 15 Synechococcus_phage(22.22%) NA NA
DBSCAN-SWA_104 1446335 : 1446569 1 Vibrio_phage(100.0%) NA NA
DBSCAN-SWA_105 1451416 : 1456723 5 uncultured_virus(50.0%) NA NA
DBSCAN-SWA_106 1460137 : 1462721 3 Clostridium_botulinum_D_phage(50.0%) NA NA
DBSCAN-SWA_107 1470631 : 1474438 3 Ostreococcus_tauri_virus(33.33%) tRNA NA
DBSCAN-SWA_108 1481892 : 1488799 8 Streptococcus_phage(75.0%) integrase attL 1475208:1475223|attR 1487369:1487384
DBSCAN-SWA_109 1493466 : 1498333 4 Aurantimonas_phage(33.33%) protease NA
DBSCAN-SWA_110 1506665 : 1518424 11 Streptococcus_phage(28.57%) tRNA NA
DBSCAN-SWA_111 1525565 : 1528760 3 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_112 1532648 : 1534001 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_113 1538015 : 1541755 3 Bacillus_virus(50.0%) protease NA
DBSCAN-SWA_114 1554119 : 1554824 1 Paramecium_bursaria_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_115 1560378 : 1565983 6 Tupanvirus(33.33%) NA NA
DBSCAN-SWA_116 1584274 : 1585159 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_117 1614691 : 1615549 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_118 1625924 : 1627688 1 Klosneuvirus(100.0%) tRNA NA
DBSCAN-SWA_119 1630926 : 1642996 18 Streptococcus_phage(81.82%) capsid,integrase attL 1628612:1628649|attR 1651995:1652032
DBSCAN-SWA_120 1649738 : 1651997 1 Iris_mild_mosaic_virus(100.0%) NA NA
DBSCAN-SWA_121 1655697 : 1659095 2 Streptococcus_phage(50.0%) tRNA NA
DBSCAN-SWA_122 1667611 : 1687584 18 Bacillus_phage(50.0%) transposase,tRNA NA
DBSCAN-SWA_123 1700159 : 1706705 9 Streptococcus_phage(50.0%) integrase attL 1690753:1690767|attR 1703169:1703183
DBSCAN-SWA_124 1714050 : 1723741 9 Gordonia_phage(25.0%) tRNA NA
DBSCAN-SWA_125 1751045 : 1752455 1 Pandoravirus(100.0%) NA NA
DBSCAN-SWA_126 1771843 : 1772728 1 Brazilian_cedratvirus(100.0%) NA NA
DBSCAN-SWA_127 1778013 : 1779402 1 Geobacillus_virus(100.0%) NA NA
DBSCAN-SWA_128 1788253 : 1788895 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_129 1800873 : 1802948 3 Heterosigma_akashiwo_virus(50.0%) NA NA
DBSCAN-SWA_130 1808913 : 1818322 5 Tetraselmis_virus(25.0%) NA NA
DBSCAN-SWA_131 1826731 : 1830907 3 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_132 1839217 : 1842631 3 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_133 1851499 : 1852531 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_134 1857514 : 1860102 3 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_135 1864876 : 1866232 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_136 1889579 : 1893640 4 Acanthocystis_turfacea_Chlorella_virus(50.0%) NA NA
DBSCAN-SWA_137 1899839 : 1909828 13 uncultured_Mediterranean_phage(28.57%) NA NA
DBSCAN-SWA_138 1913517 : 1916910 3 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_139 1924797 : 1954256 26 Streptococcus_phage(21.43%) NA NA
DBSCAN-SWA_140 1957859 : 1959011 1 Clostridium_phage(100.0%) NA NA
DBSCAN-SWA_141 1967904 : 1968753 1 Microcystis_phage(100.0%) NA NA
DBSCAN-SWA_142 1985925 : 1990402 6 Streptococcus_phage(50.0%) integrase attL 1980765:1980778|attR 1987188:1987201
DBSCAN-SWA_143 1995033 : 1998584 3 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_144 2001589 : 2002741 2 Pneumococcus_phage(50.0%) NA NA
DBSCAN-SWA_145 2019159 : 2019786 1 Abalone_herpesvirus(100.0%) NA NA
DBSCAN-SWA_146 2025592 : 2027572 1 Acanthocystis_turfacea_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_147 2038250 : 2047149 9 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_148 2053348 : 2062634 8 Pandoravirus(40.0%) NA NA
DBSCAN-SWA_149 2077245 : 2078763 1 Vibrio_phage(100.0%) NA NA
DBSCAN-SWA_150 2099751 : 2102544 1 Klosneuvirus(100.0%) tRNA NA
DBSCAN-SWA_151 2107267 : 2107969 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_152 2113194 : 2120059 4 Staphylococcus_phage(25.0%) NA NA
DBSCAN-SWA_153 2126849 : 2129816 2 Feldmannia_species_virus(50.0%) tRNA NA
DBSCAN-SWA_154 2134710 : 2137047 1 Paramecium_bursaria_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_155 2144422 : 2145694 1 Bacillus_phage(100.0%) transposase NA
DBSCAN-SWA_156 2150505 : 2152480 2 Tupanvirus(50.0%) NA NA
DBSCAN-SWA_157 2164000 : 2168509 3 Erysipelothrix_phage(50.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage