CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP031238	Haemophilus haemolyticus strain M28486 chromosome, complete genome	3 crisprs	DEDDh,DinG,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	0	5	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP031238_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP031238_1

184272-184396

Orphan

Consensus_repeat	Method
CCGCATTTACCTTCTGCGGCTTT	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP031238_1

>merge|NZ_CP031238|1|184272-184396|CRISPRCasFinder
CCGCATTTACCTTCACCACATTTACCTTCTGCAGCTTTTGGTTTGCTCGCACCGCATTTACCTTCTGCGGCTTTCGTTTCGTTTGCACCACATTTGCCTTCTCCGCATTTACCTTCTGCAGCTTT

>NZ_CP031238|1|1|184272-184396|CRISPRCasFinder
CCGCATTTACCTTCACCACATTT	ACCTTCTGCAGCTTTTGGTTTGCTCGCA
CCGCATTTACCTTCTGCGGCTTT	CGTTTCGTTTGCACCACATTTGCCTTCT
CCGCATTTACCTTCTGCAGCTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP031238.1\|WP_005626006.1\|179619_180996_-\|DNA-repair-protein-RadA	unknown	unknown	gnl\|CDD\|273067
NZ_CP031238.1\|WP_046953479.1\|182557_183274_-\|DUF2063-domain-containing-protein	unknown	unknown	gnl\|CDD\|225760
NZ_CP031238.1\|WP_046953480.1\|183263_184184_-\|DUF692-family-protein	unknown	unknown	gnl\|CDD\|225761
NZ_CP031238.1\|WP_032826499.1\|171990_172827_+\|formyltetrahydrofolate-deformylase	unknown	unknown	gnl\|CDD\|235676
NZ_CP031238.1\|WP_114892297.1\|172826_174125_+\|3-phosphoshikimate-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|235037
NZ_CP031238.1\|WP_114892299.1\|175609_176227_-\|outer-membrane-lipoprotein-chaperone-LolA	unknown	unknown	gnl\|CDD\|129638
NZ_CP031238.1\|WP_114892298.1\|174208_175549_-\|replication-associated-recombination-protein-A	unknown	unknown	gnl\|CDD\|237355
NZ_CP031238.1\|WP_162790457.1\|189808_190762_+\|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase	unknown	unknown	gnl\|CDD\|234731
NZ_CP031238.1\|WP_005625687.1\|185918_187181_+\|inorganic-phosphate-transporter	unknown	unknown	gnl\|CDD\|376541
NZ_CP031238.1\|WP_046953482.1\|193179_193896_-\|DNA/RNA-nuclease-SfsA	unknown	unknown	gnl\|CDD\|234733
NZ_CP031238.1\|WP_046953477.1\|176244_179016_-\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|236669
NZ_CP031238.1\|WP_046953481.1\|187866_189117_+\|multifunctional-CCA-addition/repair-protein	unknown	unknown	gnl\|CDD\|182810
NZ_CP031238.1\|WP_005625698.1\|184568_185024_-\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
NZ_CP031238.1\|WP_005641811.1\|190763_191711_+\|ribose-phosphate-pyrophosphokinase	unknown	unknown	gnl\|CDD\|234929
NZ_CP031238.1\|WP_005638079.1\|185213_185894_+\|TIGR00153-family-protein	unknown	unknown	gnl\|CDD\|272932
NZ_CP031238.1\|WP_005625679.1\|191793_192981_-\|tyrosine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235645
NZ_CP031238.1\|WP_046953478.1\|181121_182159_-\|inorganic-triphosphatase	unknown	unknown	gnl\|CDD\|225569
NZ_CP031238.1\|WP_005626005.1\|179017_179497_-\|leucine-responsive-transcriptional-regulator-Lrp	unknown	unknown	gnl\|CDD\|183009
NZ_CP031238.1\|WP_005625686.1\|187248_187860_+\|SH3-domain-containing-protein	unknown	unknown	gnl\|CDD\|225645
NZ_CP031238.1\|WP_032825338.1\|189188_189809_+\|outer-membrane-lipoprotein-LolB	unknown	unknown	gnl\|CDD\|129639

Protein	Function_ID	Function_description	E-value
NZ_CP031238.1\|WP_005626006.1\|179619_180996_-\|DNA-repair-protein-RadA	gnl\|CDD\|273067	TIGR00416, DNA_repair_protein_RadA_homolog, DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus (SP:P45266) and in Listeria monocytogenes (SP:Q48761) . for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP031238.1\|WP_046953479.1\|182557_183274_-\|DUF2063-domain-containing-protein	gnl\|CDD\|225760	COG3219, COG3219, Uncharacterized protein conserved in bacteria [Function unknown].	7.41259e-106
NZ_CP031238.1\|WP_046953480.1\|183263_184184_-\|DUF692-family-protein	gnl\|CDD\|225761	COG3220, COG3220, Uncharacterized protein conserved in bacteria [Function unknown].	4.22304e-151
NZ_CP031238.1\|WP_032826499.1\|171990_172827_+\|formyltetrahydrofolate-deformylase	gnl\|CDD\|235676	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed.	1.73889e-177
NZ_CP031238.1\|WP_114892297.1\|172826_174125_+\|3-phosphoshikimate-1-carboxyvinyltransferase	gnl\|CDD\|235037	PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional.	0
NZ_CP031238.1\|WP_114892299.1\|175609_176227_-\|outer-membrane-lipoprotein-chaperone-LolA	gnl\|CDD\|129638	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself. [Protein fate, Protein and peptide secretion and trafficking].	2.97667e-117
NZ_CP031238.1\|WP_114892298.1\|174208_175549_-\|replication-associated-recombination-protein-A	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
NZ_CP031238.1\|WP_162790457.1\|189808_190762_+\|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase	gnl\|CDD\|234731	PRK00343, ipk, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional.	1.1599e-178
NZ_CP031238.1\|WP_005625687.1\|185918_187181_+\|inorganic-phosphate-transporter	gnl\|CDD\|376541	pfam01384, PHO4, Phosphate transporter family. This family includes PHO-4 from Neurospora crassa which is a is a Na(+)-phosphate symporter. This family also contains the leukaemia virus receptor.	1.01934e-52
NZ_CP031238.1\|WP_046953482.1\|193179_193896_-\|DNA/RNA-nuclease-SfsA	gnl\|CDD\|234733	PRK00347, PRK00347, DNA/RNA nuclease SfsA.	3.74858e-130
NZ_CP031238.1\|WP_046953477.1\|176244_179016_-\|DNA-translocase-FtsK	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	0
NZ_CP031238.1\|WP_046953481.1\|187866_189117_+\|multifunctional-CCA-addition/repair-protein	gnl\|CDD\|182810	PRK10885, cca, multifunctional CCA addition/repair protein.	0
NZ_CP031238.1\|WP_005625698.1\|184568_185024_-\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	2.07658e-26
NZ_CP031238.1\|WP_005641811.1\|190763_191711_+\|ribose-phosphate-pyrophosphokinase	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	0
NZ_CP031238.1\|WP_005638079.1\|185213_185894_+\|TIGR00153-family-protein	gnl\|CDD\|272932	TIGR00153, UPF0111_protein_MTH_1689, TIGR00153 family protein. An apparent homolog with a suggested function is Pit accessory protein from Sinorhizobium meliloti, which may be involved in phosphate (Pi) transport. [Hypothetical proteins, Conserved].	2.06048e-86
NZ_CP031238.1\|WP_005625679.1\|191793_192981_-\|tyrosine--tRNA-ligase	gnl\|CDD\|235645	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated.	0
NZ_CP031238.1\|WP_046953478.1\|181121_182159_-\|inorganic-triphosphatase	gnl\|CDD\|225569	COG3025, COG3025, Uncharacterized conserved protein [Function unknown].	9.32041e-135
NZ_CP031238.1\|WP_005626005.1\|179017_179497_-\|leucine-responsive-transcriptional-regulator-Lrp	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	9.96197e-108
NZ_CP031238.1\|WP_005625686.1\|187248_187860_+\|SH3-domain-containing-protein	gnl\|CDD\|225645	COG3103, COG3103, SH3 domain protein [Signal transduction mechanisms].	1.01521e-82
NZ_CP031238.1\|WP_032825338.1\|189188_189809_+\|outer-membrane-lipoprotein-LolB	gnl\|CDD\|129639	TIGR00548, Outer-membrane_lipoprotein_lolB_precursor., outer membrane lipoprotein LolB. This protein, LolB, is known so far only in the gamma and beta subdivisions of the Proteobacteria. It is a processed, lipid-modified outer membrane protein. It is required in E. coli for insertion of the major outer lipoprotein (Lpp) into the outer membrane. Lpp is transferred to LolB from the carrier protein LolA in the periplasm. Previously, this protein was thought to play in role in 5-aminolevulinic acid synthesis and was designated HemM. [Protein fate, Protein and peptide secretion and trafficking].	2.81081e-101

>NZ_CP031238.1|WP_046953480.1|183263_184184_-|DUF692-family-protein
MLQGAGLGYRRDLADDFLNLSSNNAIQFMEVAPENWVKMGGAARYKFDQAAERYPLAVHGLSLSLGGQAPLDRELLKNTKALMTQYNSTFFSEHLSYCECEGHLYDLLPMPFTEEAVKHVAQRIRYVQDFLGLQISLENTSYYLHSPTSTMNEVEFLNAIAQEADCGIHLDVNNIYVNGVNHGLLDPYVFLDQVDVKRVNYIHIAGHDEEHSAAQVVEDLEGESFNKIKGAYRHLPELLIDTHGEAVKGTVWDLLEYAYQRLPVIPPTLLERDFNFPPFAELYAEVEHIAQLQQKYAQKEVISYAA
>NZ_CP031238.1|WP_046953479.1|182557_183274_-|DUF2063-domain-containing-protein
MQPKPSLIETQKALATAVRLAHAQPLNGYAPNRIAVYARLVRNNIFGFIDRCFVEAPKHVSAESWSQTKETFVLTGKSHSPYFQDIAGEFLLFCQEKESFDANILALMDFENTQLLAEVSLAKVPEKFEWDKHSVMQLSDAAYLKSYEVDFLSSDFKQFDENPMQAVIWRDSDFNILQQRLSELDFWLLTYIQEQPSSLEEVLSALNTVVEDSTPLIPLLENTWVNWINAEVLYPKEG
>NZ_CP031238.1|WP_046953478.1|181121_182159_-|inorganic-triphosphatase
MLQEIELKLAISPQISIELPQYLAKFTILDHQDLFLSNTYYDYPDHFLAKQKMGLRIRQEDQELTLTLKTNGEVVGGLHSRPEYNLPLTEKETPTNAQLRELYPFEQLPSSTLQPIFSTDFNRTFWLVEFQQSKIEVAFDQGKIISGVSEQPICEIEFELKSGNVQDLFDFVETLPFERDIYFSSASKAKRGYLLGSKQFLTDWLNKWRDFLKEEREESAVDFGAKFNSVLKMEQKLLEETLSFSPALFSQDFMKTVERVGAFFNLYHYYDENGKILDAVATEKQKETLLSALLERNQKIFAEIRDLIRFHSETKDNEKTIEKLTALLKSRVYFERMIKLMRFSA
>NZ_CP031238.1|WP_005626006.1|179619_180996_-|DNA-repair-protein-RadA
MAKASKTAYVCNDCGAEFSRWQGQCSACKAWNTITEVRLISIAKSKNDRFSGYAGETQAKIQTLSEISLQETPRFSSGFNELDRVLGGGIVPGSAILIGGHPGAGKSTLLLQVMCGLAKNMTALYVTGEESLQQVAMRASRLGLPNDQLKMLSETSVEQICNLADQLKPQIIVVDSIQVMHLADIQSSPGSVAQVRECASFLTRYAKTRQVAIIMVGHVTKDGTLAGPKVLEHAIDCSLLLEGEADSRYRTLRSHKNRFGAVNELGVFGMTEQGLREVKNPSAIFLSRGDEITSGSSVMVLWEGTRPLLVEIQALVDHSMLANPRRVAVGLEQNRLALLLAVLHRHGGLQMADQDVFVNVVGGVKVSETSADLALLLALISSFRNRPLPQDLVIFGEVGLAGEIRPVPSGQERISEAAKHGFKRAIVPFGNKPKSAVENMQVFTVKKLSDALAVLDNF
>NZ_CP031238.1|WP_005626005.1|179017_179497_-|leucine-responsive-transcriptional-regulator-Lrp
MEKKLNKALDAIDRKILNELQRNGKISNIDLSKKVGLSPTPCLERVKRLEKQGVIMGYRALLNPELLEAPLLVIVEITLVRGKPDVFEEFNAAIQELEEIQECHLVSGDFDYLLKTRVADMAEYRKLLGTTLLRLPGVNDTRTYVVMEEVKQTNFLVLK
>NZ_CP031238.1|WP_046953477.1|176244_179016_-|DNA-translocase-FtsK
MIRQITERFTPRQYLAELLLGLTALFGLYLIIAWSSYTPLDNSWATAGAHGETINKVGAFGAWIIDLSFVFLGYVAHVIPFAVFFVPVYLLKTRAVKNLSCTRIILRSFGFTMLIIGLCVMSMLLLSSNAFYLSGGVVGGSLVVNWLYPALGKFGAILIGFTFALIGFIFCSGASLIRLIVAFYHWLTMKNEQEERVEQEMSTEELEQIVIVKSDSSETENLDQNNLNVEPNSEIETQKSSLEAEDNSVEQPSHLINIHGLNSEVSIKSEYEVSPEESVKPQFSLEFESESLPSVNLSSDSHGQTVSKNDFVPVWNKSVKPTVQDDESIYESADDFTKVSLLTHDEMPTVSLKPTHESLNTEMADNNFNVQADEKVRLGDDELKFNVSLQDDIRDVQLDKNQEESPNYKGYSGSLIHPAFQQQTTKREKPSTPLPSLDLLSKHPAVEQNITQEEVFETSQRIEQQLRNFNVKATVKDVLVGPVVTRYELELQPGVKASKVTSIDTDLARALMFRSIRVAEAIPGKPYIGIETPNLHRQMVPLRDVLDSSEFRDTHATLPMALGKDISGKAVIVDLAKMPHLLVAGSTGSGKSVGVNTMILSLLYRVQPEDVKFIMIDPKVVELSVYNDIPHLLTPVVTDMKKAANALRWCVDEMERRYQLLSALRVRNIEGFNEKIDEYEAMGMPVPNPIWRPGDTMDAMPPALKKLSYIVVIVDEFADLMMVAGKQIEELIARLAQKARAIGIHLILATQRPSVDVITGLIKANIPSRIAFTVASKIDSRTILDQGGAEALLGRGDMLYSGQGSSDLVRVHGAFMSDDEVIRIADDWRARGKPDYIDGILESADDEEGTEKGISSGGELDPLFDEVMDFVINTGTTSVSSIQRKFSVGFNRAARIMDQMEEQGIVSPMQNGKREILSRRPDY
>NZ_CP031238.1|WP_114892299.1|175609_176227_-|outer-membrane-lipoprotein-chaperone-LolA
MKKTALKFAALALLGLSNLALADAASELQMRLAKVDVLSAEFVQTVTSGSGKNVQQGSGKLQIKRPNLFRMDTKTPQETQIISDGKTLWFYDPFVQQVTAQWVKDAVNNTPFVLLTSNDKSHWDQYSVMQQVDTFVLKPKSSKSNIKQFDIRVDVNGVLRNFSTTEKDGQTNLYVLRNITNQTLSDSLFQFKPEKGVEVDDQRKK
>NZ_CP031238.1|WP_114892298.1|174208_175549_-|replication-associated-recombination-protein-A
MSNLNFDFAENDFRPLAAKMRPTSLEQYFGQTHLIGEGKPLRKAIQAGHIHSMIFWGPPGTGKTTLAEIIAQRINADVERISAVTSGIKEIREAIDRAKQNRLADCKTILFVDEVHRFNKSQQDAFLPHIEDGTVIFIGATTENPSFELNNALLSRARVYVLKSLTTAEIEQVLQQAVEDPERGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMADETENGKKIDRTLLKEVLGERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAYEGERAIAQAIIYLAVAPKSNAVYTAFNTAKQQAKDLPDYDVPPHLRNAPTNLMKELGYGAEYRYAHDEPNAYAAGENYFPPELKDTQYYFPMNRGMEIQIREKLERLREQDKSAVKKRYK
>NZ_CP031238.1|WP_114892297.1|172826_174125_+|3-phosphoshikimate-1-carboxyvinyltransferase
MEKITLAPISAVEGTINLPGSKSLSNRALLLAALSKGITKVTNLLDSDDIRHMLNALKALGVRYQLSDDKTICEIEGLGGAFNIQDNLSLFLGNAGTAMRPLTSALCLKGTSEVEIILTGEPRMKERPILHLVDALRQVGADIRYLENEGYPPLAIRNKGIKGGNVKIDGSISSQFLTALLMSAPLAENDTEIEIIGELVSKPYIDITLAMMRDFGVHVENHHYQKFQVKGNQSYVSPGKYLVEGDASSASYFLAAGAIKGKVKVTGIGKNSIQGDRLFADVLEKMGAKITWGEDFIQAERAELHGIDMDMNHIPDAAMTIATTALFAKGESVIRNIYNWRVKETDRLAAMATELRKVGAEVEEGEDFIRIQPLALNQFKHADIETYNDHRIAMCFSLIALSNTAVTILDPKCTAKTFPTFFSQFEKICLGG
>NZ_CP031238.1|WP_032826499.1|171990_172827_+|formyltetrahydrofolate-deformylase
MIEKKILLTDCPDDKGLIAKITNICYKHQLNILHNNEFVDFETKHFFMRTELEGIFNEATLLEDLKYSLPEGTHCRLISTQRKRIVILVTKEAHCLGDILMKNYYGALDVEIAAVIGNHDNLRELVERFNIPFHLVSHEGLTRIEHDKLLAEKIDEYTPDYIVLAKYMRVLNPEFVARYPNRVINIHHSFLPAFIGAKPYQQAYERGVKIIGATAHFINNELDQGPIIMQNVINVDHTYSAEAMMRAGRDVEKTVLSRALDLALHDRIFVYKNKTVVL
>NZ_CP031238.1|WP_005625698.1|184568_185024_-|DoxX-family-protein
MKDCKIQSISSGVSLLILRFFLAWEFLEAGLEKWNGQNWFTEIQDRFPFPFNLIPADINWLVAMGSELILPFLLIFGVLTRFSALGLTILISVAWYSIHADSGYNVCDNGYKLPLIYVVTLLILITQGAGKLSLDTLIKKVYPTKSWLKFL
>NZ_CP031238.1|WP_005638079.1|185213_185894_+|TIGR00153-family-protein
MAMNNILGLFAHSPLKPLQKHSEKVTECSDLLIPFFETTFSKDWEKAEEKRLEISQREREADSLKREIRLKLPRGLFLPIDRTDLLELVTQQDKLANFAKDIAGRMIGRQFGIPEEMQEEFLHYVKRSLDAIHQAHRVIEEMDQLLETGFKGRELKLVNDMIQELDAIEDDTDQMQIKLRKMLYTIESRYNPIDVMFLYKIIEWVGVLADQAQRVGSRIELMLARS
>NZ_CP031238.1|WP_005625687.1|185918_187181_+|inorganic-phosphate-transporter
MEVISQYGSCLVWITAAFGFFMAFGIGANDVSNSMGTSVGSGTVTAKQAIIIALIFESAGAYLAGGEVTETIKSGVIDPMQFVDTPDILALGMLSALFASGAWLFIATKMGWPVSGTHTIIGAIIGFACITIGPGAVDWSNIGSIVGSWFITPVIAGILAYAIFASTQKLIFDTEHPLKNAQKYGPYYMGITVFVLCIVTMTKGLKHVGLNLSNKETLVISLIISLVGMLFFHFYFKSKTFTQSASKGTFGAVEKVFSILMLLTACAMAFAHGSNDVANAIGPLSAVVSIVEQGGKIVSGGALTWWILPLGALGIAVGLITMGQKVMATVGSGITDLTPSRGFAAQFATAMTVVVASGTGLPISTTQTLVGAILGIGFARGIAALNLTVIRNIISSWIITLPAGAFFAIIIFYLLRAVFN
>NZ_CP031238.1|WP_005625686.1|187248_187860_+|SH3-domain-containing-protein
MKKIYNTLLSCALLGTGIATAHAETQYVTENLSTFLRRGAGEQFKIAGSIQAGEAVNVLDRQGKYTLIRDNKNREAWILNSDLSSTPSSKEENPKLKAQVQELTLKLNRLDGDWQQRTVEMQRRTKQAEQQSADLLEQNSQLKRELEMTKNKNRDLEAMLDAGKREIAIQWFIYGGSVLGVGLLFGLLIPYVLPKRRRRDGWA
>NZ_CP031238.1|WP_046953481.1|187866_189117_+|multifunctional-CCA-addition/repair-protein
MRVYLVGGAVRDQLLGLPVKDRDWIVVGAVPATLLSLGYQQVGKDFPVFLNPKTKEEYALARTERKSSAGYTGFICDFSPTITLEQDLIRRDLTINAMAQSEEGEIIDPYGGKQDLENRILRHISPAFSEDPLRVLRVARFAARYHSLGFKIASETLSLMAELAQSGELQHLTAERVWLETEKALNEKNPEIYFETLHKTGALRVLFPEIDALYGVPNPVKHHPEVDSFIHTMLVLKQAVNLTENNPILNRSAVRFAAICHDLGKALTPQNILPHHYGHEQAGIKPTRSLCRRLKVPSYFQELAELTCEFHTHIHKAFELRAETVITLFNRFDVWRKAQRFQEFLQVCLADTRGRTGFENKDYPQIDYINQLLQAANEVDVQQVIADGFEKQEIRNELTKRRILAVKQTKANYPQN
>NZ_CP031238.1|WP_032825338.1|189188_189809_+|outer-membrane-lipoprotein-LolB
MKTFKFLTALFVTSILTACTMDAERPVNVQYIDKTDATWQQHLQKIQKIQSYQAKGQIGYISPTERFSSRFEWQYQNPKSYTLKLYSLISKSTLWIQMHQSGMTISDNNGNQQSAANAKLLLQEIIGMDVPLEHLAYWLKGQPAMNADYQVGTNHLLGAFTYHVDGSQWTADYLTYHSNNSMPENILLKNDSTKQTLKIRVDEWIY
>NZ_CP031238.1|WP_162790457.1|189808_190762_+|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase
MNTLMKSHQFSTALCQNTTQSNGKPLRFPSPAKLNLFLYINGKLPNGYHELQTLFQFLDFGDWLEMSIREEDNQIVLTPEIPNLKTENNLIYRAAKLLQEKANIQLGANIHLDKILPMGGGVGGGSSNAATALVALNYLWQANLSIDELAKLGLTLGADVPIFVHGHAAFAEGVGEKITYCEPAEKWFVVLKPDDSISTAAIFQDPNLPRNTPKKSLEQLLSESYVNDCEKIVINHYSNVEKALNWLLQYAPARLTGTGACVFAEFEHEAEAQAVFRQKPKEFFGFVTKGLNVSPLHAMLKQLSSTYTHRQSKPEVL
>NZ_CP031238.1|WP_005641811.1|190763_191711_+|ribose-phosphate-pyrophosphokinase
MPDIKLFAGNATPELAKRISERLYISLGDATVARFSDGEIQVQINENVRGADVFIIQSTCAPTNDNLMELIVMVDALRRASAGRITAVIPYFGYARQDRRVRSARVPITAKVVADLLSTVGIDRVLTCDLHAEQIQGFFDVPVDNVFGSPVLIHDILKKSDLENPIVVSPDIGGVVRARAVAKLLNDTDMAIIDKRRPRANVAQVMHIIGDVADRDCILVDDMIDTGGTLCKAAEALKERGAKRVFAYATHAVFSGAAAKNLASDAIDEIVVTDTIPLSEEMKAIGKVRVLTLSSMLAEAIRRISNEESISAMFN
>NZ_CP031238.1|WP_005625679.1|191793_192981_-|tyrosine--tRNA-ligase
MTDINTVLAELKRGTDEILSEADLIEKLKENRPLKVKLGADPTAPDIHLGHTVVLNKLRQFQQLGHEVYFLIGDFTGMVGDPSGKNATRPPLSREDVLRNAETYKEQIYKILDPQKTKIVFNSEWLSKLGTEGMIRLASNYTVARMLERDDFKKRFSNNQPIAIHEFIYPLLQGYDSVALDADVELGGTDQKFNLLVGRELQKSAGKKPQVAITLPLLVGLDGEKKMSKSLGNYIGVTEAPSDMFGKVMSISDELMWDWYNLLSFRPLSEIAQLKSEVENGKNPRDVKILLAKELIARFHNEEAANAAEQEFINRFQKGAMPDEMPEFTFSGEIGLATLLKEAGLVPSTSEAIRSAQQGGVKINGEKVDNVKDNAPKGTNVYQVGKRKFARVTVE
>NZ_CP031238.1|WP_046953482.1|193179_193896_-|DNA/RNA-nuclease-SfsA
MQLPALQSAKLIRRYKRFLADIELPTGDVMTIHCANTGAMTGCGEKGDIIWYSHSDSQTRKYPHSWELTQLENGQLCCINTHRSNQLVFEALQNKQIKELAMYEEIYPEVKYGEENSRIDFLLKGEGLPDCYVEVKSITLVKGNLGMFPDAVTTRGQKHVRELLAMKKQGHRAVVLFAGLHNGFDRFKIAEYIDPEYDRLLKEAMEQGVEAYAYAGKFEISNGIPTALSLTESVPYIK

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Crispr_ID: NZ_CP031238_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP031238_2

1204030-1204462

TypeI

Consensus_repeat	Method
GCAGCCGCCTTCGCGCGGCTGTGTGTTGAAACCA	PILER-CR
GCAGCCGCCTTCGCGCGGCTGTGTGTTGAAAC	CRISPRCasFinder
GCAGCCGCCTTCGCGCGGCTGTGTGTTGAAAC	CRT

6 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NZ_CP031238_2

>merge|NZ_CP031238|2|1204030-1204462|PILER-CR,CRISPRCasFinder,CRT
GCAGCCGCCTTCGCGCGGCTGTGTGTTGAAACTAAAATTTTAGGCACGTTATTAAGACTTGGTAACTCGCAGCCGCCTTCGCGCGGCTGTGTGTTGAAACCAAGTATTAGTGCCGGGTGCGGTGGGATTGATGCGCAGCCGCCTTCGCGCGGCTGTGTGTTGAAACTATGCCTTTCTTCAGCTCAAGGTAGAGGCATTAAGCAGCCGCCTTCGCGCGGCTGTGTGTTGAAACCAGTTATTATGCTATTTATTAGCAAAAAAAGAAAAAGCAGCCGCCTTCGCGCGGCTGTGTGTTGAAACCAACGTATCTTATATCCACCGACAAACAGGTGTATGCAGCCGCCTTCGCGCGGCTGTGTGTTGAAACAAAAAAGGCGCGAAAACGGGAAGGCTTTTTCCTTGCAGCCATCTTCGGGTGGCTGTGTGTTGAAAC

>NZ_CP031238|2|1|1204030-1204398|PILER-CR
GCAGCCGCCTTCGCGCGGCTGTGTGTTGAAACTA	AAATTTTAGGCACGTTATTAAGACTTGGTAACTC
GCAGCCGCCTTCGCGCGGCTGTGTGTTGAAACCA	AGTATTAGTGCCGGGTGCGGTGGGATTGATGC
GCAGCCGCCTTCGCGCGGCTGTGTGTTGAAACTA	TGCCTTTCTTCAGCTCAAGGTAGAGGCATTAA
GCAGCCGCCTTCGCGCGGCTGTGTGTTGAAACCA	GTTATTATGCTATTTATTAGCAAAAAAAGAAAAA
GCAGCCGCCTTCGCGCGGCTGTGTGTTGAAACCA	ACGTATCTTATATCCACCGACAAACAGGTGTAT
GCAGCCGCCTTCGCGCGGCTGTGTGTTGAAACAA

>NZ_CP031238|2|2|1204030-1204462|CRISPRCasFinder
GCAGCCGCCTTCGCGCGGCTGTGTGTTGAAAC	TAAAATTTTAGGCACGTTATTAAGACTTGGTAACTC
GCAGCCGCCTTCGCGCGGCTGTGTGTTGAAAC	CAAGTATTAGTGCCGGGTGCGGTGGGATTGATGC
GCAGCCGCCTTCGCGCGGCTGTGTGTTGAAAC	TATGCCTTTCTTCAGCTCAAGGTAGAGGCATTAA
GCAGCCGCCTTCGCGCGGCTGTGTGTTGAAAC	CAGTTATTATGCTATTTATTAGCAAAAAAAGAAAAA
GCAGCCGCCTTCGCGCGGCTGTGTGTTGAAAC	CAACGTATCTTATATCCACCGACAAACAGGTGTAT
GCAGCCGCCTTCGCGCGGCTGTGTGTTGAAAC	AAAAAAGGCGCGAAAACGGGAAGGCTTTTTCCTT
GCAGCCATCTTCGGGTGGCTGTGTGTTGAAAC

>NZ_CP031238|2|1|1204030-1204462|CRT
GCAGCCGCCTTCGCGCGGCTGTGTGTTGAAAC	TAAAATTTTAGGCACGTTATTAAGACTTGGTAACTC
GCAGCCGCCTTCGCGCGGCTGTGTGTTGAAAC	CAAGTATTAGTGCCGGGTGCGGTGGGATTGATGC
GCAGCCGCCTTCGCGCGGCTGTGTGTTGAAAC	TATGCCTTTCTTCAGCTCAAGGTAGAGGCATTAA
GCAGCCGCCTTCGCGCGGCTGTGTGTTGAAAC	CAGTTATTATGCTATTTATTAGCAAAAAAAGAAAAA
GCAGCCGCCTTCGCGCGGCTGTGTGTTGAAAC	CAACGTATCTTATATCCACCGACAAACAGGTGTAT
GCAGCCGCCTTCGCGCGGCTGTGTGTTGAAAC	AAAAAAGGCGCGAAAACGGGAAGGCTTTTTCCTT
GCAGCCATCTTCGGGTGGCTGTGTGTTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP031238.1\|WP_114892522.1\|1212972_1214043_-\|chemotaxis-protein	unknown	unknown	gnl\|CDD\|237537
NZ_CP031238.1\|WP_114892516.1\|1197819_1199598_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|187887
NZ_CP031238.1\|WP_046952758.1\|1200493_1201150_+\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
NZ_CP031238.1\|WP_114892518.1\|1209841_1210603_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031238.1\|WP_114892515.1\|1193269_1195561_+\|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688
NZ_CP031238.1\|WP_114892521.1\|1211287_1212925_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031238.1\|WP_046952750.1\|1208817_1209768_+\|cysteine-synthase-A	unknown	unknown	gnl\|CDD\|273465
NZ_CP031238.1\|WP_046952751.1\|1207899_1208718_+\|sulfate-transporter-CysZ	unknown	unknown	gnl\|CDD\|179898
NZ_CP031238.1\|WP_114892517.1\|1206760_1207747_-\|cell-division-protein-ZipA	unknown	unknown	gnl\|CDD\|234977
NZ_CP031238.1\|WP_114892523.1\|1214077_1214770_-\|DUF3944-domain-containing-protein	unknown	unknown	gnl\|CDD\|227078
NZ_CP031238.1\|WP_046952756.1\|1201442_1202384_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031238.1\|WP_114892520.1\|1211004_1211298_-\|YkgJ-family-cysteine-cluster-protein	unknown	unknown	gnl\|CDD\|308985
NZ_CP031238.1\|WP_046952753.1\|1204631_1206650_-\|NAD-dependent-DNA-ligase-LigA	unknown	unknown	gnl\|CDD\|236137
NZ_CP031238.1\|WP_046952755.1\|1202527_1203541_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_CP031238.1\|WP_114892519.1\|1210568_1210880_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031238.1\|WP_046952762.1\|1195657_1196980_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|179385
NZ_CP031238.1\|WP_046952754.1\|1203544_1203838_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP031238.1\|WP_046952761.1\|1197142_1197823_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
NZ_CP031238.1\|WP_046952757.1\|1201175_1201439_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031238.1\|WP_046952759.1\|1199609_1200476_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458

Protein	Function_ID	Function_description	E-value
NZ_CP031238.1\|WP_114892516.1\|1197819_1199598_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|187887	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Zn-finger domain containing protein, distant homologs of Cas8 proteins; signature gene for I-C subtype; also known as Csd1 family.	0
NZ_CP031238.1\|WP_046952758.1\|1200493_1201150_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	8.62445e-44
NZ_CP031238.1\|WP_114892515.1\|1193269_1195561_+\|CRISPR-associated-helicase-Cas3'	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	3.42186e-55
NZ_CP031238.1\|WP_114892523.1\|1214077_1214770_-\|DUF3944-domain-containing-protein	gnl\|CDD\|227078	COG4735, COG4735, Uncharacterized protein conserved in bacteria [Function unknown].	9.81669e-41
NZ_CP031238.1\|WP_046952750.1\|1208817_1209768_+\|cysteine-synthase-A	gnl\|CDD\|273465	TIGR01139, Cysteine_synthase, cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate. [Amino acid biosynthesis, Serine family].	6.23109e-178
NZ_CP031238.1\|WP_046952751.1\|1207899_1208718_+\|sulfate-transporter-CysZ	gnl\|CDD\|179898	PRK04949, PRK04949, putative sulfate transport protein CysZ; Validated.	4.0881e-149
NZ_CP031238.1\|WP_114892520.1\|1211004_1211298_-\|YkgJ-family-cysteine-cluster-protein	gnl\|CDD\|308985	pfam03692, CxxCxxCC, Putative zinc- or iron-chelating domain. This family of proteins contains 8 conserved cysteines. It has in the past been annotated as being one of the complex of proteins of the flagellar Fli complex. However this was due to a mis-annotation of the original Salmonella LT2 Genbank entry of 'fliB'. With all its conserved cysteines it is possibly a domain that chelates iron or zinc ions.	9.67735e-05
NZ_CP031238.1\|WP_114892522.1\|1212972_1214043_-\|chemotaxis-protein	gnl\|CDD\|237537	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional.	2.70784e-05
NZ_CP031238.1\|WP_046952753.1\|1204631_1206650_-\|NAD-dependent-DNA-ligase-LigA	gnl\|CDD\|236137	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated.	0
NZ_CP031238.1\|WP_046952755.1\|1202527_1203541_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NZ_CP031238.1\|WP_046952762.1\|1195657_1196980_+\|hypothetical-protein	gnl\|CDD\|179385	PRK02224, PRK02224, DNA double-strand break repair Rad50 ATPase.	0.000418292
NZ_CP031238.1\|WP_046952754.1\|1203544_1203838_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	5.58346e-30
NZ_CP031238.1\|WP_046952761.1\|1197142_1197823_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	3.15475e-117
NZ_CP031238.1\|WP_114892517.1\|1206760_1207747_-\|cell-division-protein-ZipA	gnl\|CDD\|234977	PRK01741, PRK01741, cell division protein ZipA; Provisional.	3.24227e-149
NZ_CP031238.1\|WP_046952759.1\|1199609_1200476_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	1.16086e-152

>NZ_CP031238.1|WP_046952754.1|1203544_1203838_+|CRISPR-associated-endonuclease-Cas2
MLMLITYDISFDDPNGQARLRRIAKHCLDYGVRAQYSVFECDVTPDQWVILKNKLLETYDPTCDSLRFYHLGSKWRNKVEHHGAKPAVDVFKDVLII
>NZ_CP031238.1|WP_046952755.1|1202527_1203541_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MRKLQNTLYITTQGSYLHKERETLVVEQEHKKVAQLPVHSIGHIFCFGNVLVSPFLLRFCGENNVNLAFFTENGRYLGRLQGRQSGNVLLRRAQYRVSEQNPVPIARNIIAAKIQASKRVLQRQIRNYGENTAIQSAVDSLNISLRQLKGAADLDVVRGIEGDAAARYFGVFWQLLSEKSGFTFDGRNRRPPRDGVNALLSFVYSILGKDISGALQGVGLDPQVGFLHADRPGRDSLAQDILEEFRAWWADRLVLSLINRGQIKPQDFVTEASGAVSLKADARKLLFQALQAKKQEKIVHPFLDEEVEIGLLPYIQAMLLARHLRGDLAEYPPFLMR
>NZ_CP031238.1|WP_046952756.1|1201442_1202384_+|hypothetical-protein
MVLGKNLTLSQGENSVSLQNQGEITGNVNIGLSFSEIQDLFEKLFSAKLPSLIADARSESYKAIADFAFKFHEKLNSTVDEAVSGRIDEEMEKRFASSEVQSLISEMVNQVGTKNDISLNEVLANLLMDKLSSNNNDYLINQAISYLKYLNKDQVFFLCFIKCLRKPLYVSVQHDDGEFYSNFFDVYQQIVSNVNSIESQTDLMQQAKELYKKYINGISKFFMENISSPVNIDLLALNNMVFSDKSYKINTLKLLGDSLGVNDYKTENIKTDFPDFIEFIEFMKIDASELDELIKPLTPFGECIAENCNIKID
>NZ_CP031238.1|WP_046952757.1|1201175_1201439_+|hypothetical-protein
MKIFFVIVWLLLAFITNIFDKSFLGLNPNSWSMIFSALSLLFGASYMRDRFVKNNISANLNGDNIQNIQNSGKINGNININQINKKD
>NZ_CP031238.1|WP_046952758.1|1200493_1201150_+|CRISPR-associated-protein-Cas4
MTALLTKTQGENQDTRLIPLSALQHYAFCPRQCALIHNEQAWAENYLTAQGKALHERVDSGEPETRKGVRFERTVHVSAEKLGISGVLDLVEVETKTGRLKPVEYKRGKPKPDPMDEIQLCAQGLCLEEMTGQTVSEGALWYMQTRHRVPVVFSDDLRTQTLATIAAVRELLESGQTPPPNYGKRCKACSLVEICQPELLGKRDRSLGYVAGLFGKCF
>NZ_CP031238.1|WP_046952759.1|1199609_1200476_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MSAIQNRYEFVYFFDVTNGNPNGDPDAGNMPRLDPESSKGLVTDVCLKRKIRNFVEISSENEAGYEIYVKEKSVLNLQNKRAYEALGIESEAKKLPKDEAKARDITAWMCKNFFDIRTFGAVMTTEVNSGQVRGPVQLAFAQSIDPIVPLEVSITRMAVTNEKDLEKERTMGRKYIVPYALYRVHGFISANLAAKTGFSDDDLAKLWQALQLMFEHDRSAARGEMAARKLIVFKHDSALGSQPAHKLFDAVKVERVNGESGTPASGFGDYNISVVSDGLNGVSVEELL
>NZ_CP031238.1|WP_114892516.1|1197819_1199598_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MILASLARYYRRLAAETDEMGNPKVPPYGFSEEKISWILVLDKEGRLKTAVPNLTADKKPQPKLMSVPRHEKRTSGIKPNFLWDKTAYALGVEANKNKAEAKEKPFTSSEKTFDAFKQYHLDLLQNSEDEGLQALCRFLQNWQPDNFATENLPAEMLDANIAFSFEKTTACIHKREAAQAIWANCLKSDEAEEGLCLISGDTAPIARLHPAIKGVFGGQSSGGSIISFNKEAFASFGKEQGANAPVSEQSAFAYTTALNYLLRRENNHCLTIGDASTVFWAEADDNATAQAAEGFFAHVFTPPDDEQESAKIFNVLEQIGKGRPLQEIAPELSPNTRFYILGLAPNAARISVRFWLDTTFGQLAENLAQHWQDLALEPCAWKTPPSIWRLLLQTAVLGKSENISPVLAGEMTRAVICGTPYPLSLLSQLIARIRADGDVNGLRVAMMKAVLERRFRKGFIEEGVPMSLNNESPNRAYLLGRLFAVLERIQYQALGELNAGIADRYYGSASAVPFSVFPRLLSGAKHHLSRLRKDKAGMAVNLDKDLGEIIAKLPETFPRHLSIDEQGRFAIGYYHQKQSYFAKKETAETIEN
>NZ_CP031238.1|WP_046952761.1|1197142_1197823_+|type-I-C-CRISPR-associated-protein-Cas5
MNQIRLHIWGDYACFTRPEMKVERVSYDVITPSAARGILAAVHWKPAIRWVIDKIYVLKPIRFESVRRNELGGKISAGKVSGAMKRKNVADLYTLIEDDRQQRAATVLKDVAYVIEAHAVLTAKAGADETVTKHIEMFKRRAKKGQCFQQPCLGVREFPADFALIDEGEPLPLPLPALSESETNRDLGWMLHDIDFDHGNTPHFFRAEMKDGVIDVPPFYAEEVKA
>NZ_CP031238.1|WP_046952762.1|1195657_1196980_+|hypothetical-protein
MNQVLLDIKDELNNIIQQLESSISSEDVLNYARNGWAYPGIAREELVTEAQKVITLIETKGNDEINDENNVLSRYVKALEFLRANTIPQIWGNPHEAVSAYIITINALRTALEPFLIKDDSKELAIRLKNQRKRVRSLEATLNDLEPRTSPLKDMVSSIEQAHETAEQLPTDLESLREARKTISQLVTESTADKTAVSNTKTEIEKLQAELKDASQEAKDILEECKSTYAAATSVGLAAAFSERSDSLSTSMWVWVGGLVLSLSAGGYFGSVQLQKLLELMAQQDISSLSMSINFIMAILSIGAPIWFSWLATKQIGQRFKLSEDYAFKASVSRAYEGFRKETTRFDNEMEAKLLSSALTRLDELPLRLVEAESHGSPWHELASSNIVKQAMSKIPSFPDKVKELAGNVMSERQESIKVNQGKNKSIPRKNDDSSDEDDV
>NZ_CP031238.1|WP_114892515.1|1193269_1195561_+|CRISPR-associated-helicase-Cas3'
MFTKPFYYAHSAQDKLGNLLPYEHWQTLQSHSVNVGEMAAEFARVFGAQEIACQTGQLHDLGKYSEAFDQRLHGALSVDHAIAGAKIAVERWGNVIGKLMAFCIAGHHAGLANGSGEGDNRRTLKQRLALQFGADIPTLDNLWQQEIKLPQNLSAPPLKADAHHPYFSYAFFTRMLYSCLVDADYLDTEAFYLKLENKAVERGGYPDLNALQHNFNQFINAFRRRITQAPEQTEAEKRNAALNRLRSEILEHAVEQAAQAQGLFTLTVPTGGGKTFTSMAFALEHAKRHGMRRVIYVIPFTSIIEQNAAEFRKAFGELGEQAVLEHHSTFDDGKLQNKATKDKLRLASENWDAPIVVTTAVQFFESLFADRSSRCRKLHNITGSVIILDEAQMLPLNLLLPIMQAIKELAQNYRCSVVMCTATQPAVQAENGFYRGFENVREIAPKPTALFDKLRRTTVQHIGSQTDADLLAKLAEHLQMLVIVNNRRHAHSLYDQAKHLEGTFHLTTLMCAKHRSQKLDEIRGRLKNGEPCRVIATSLIEAGVDVDFPLVMRAEAGLDSVAQAAGRCNREGKRPSENSFVWIFAPEEQWKAPPELAAQAAVMRLTADSFSDDLLSTQAVAAYFAELYQLKGSELDNKKILKMHNDTGQSLDFPFQTIADKFRMIESHMQPLIVPFDGEAENLISSLRYADHIGGLLRKLQPYTVQIPESALAALYKAGRIEPINEKNFGKQFYTLIGLDLYDQVAGLSWDDTEFLKGESLVF
>NZ_CP031238.1|WP_046952753.1|1204631_1206650_-|NAD-dependent-DNA-ligase-LigA
MTNIQTQIDNLRKTLRQYEYEYHVLDNPTVPDSEYDRLFHQLKALELEHPEFLTSDSPTQRVGAKPLSGFSQIRHEIPMLSLDNAFSDEEFKAFVKRIEDRLIVLPKPLTFCCEPKLDGLAVSILYVNGILTQAATRGDGTTGEDITANIRTIRNIPLQLLTDNPPARLEVRGEVFMPHAGFERLNEYALEHGEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVELPSNHYARLQWLKSIGIPVNSEIRLCNGTNEVLDFYRDIQNKRSSLGYDIDGTVLKINDIALQNKLGFISKAPRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLHNGDEIERLNIAIRDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIFPTNCPVCDSQIIRIEGEAVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGGKLIEQLVDRELIHTPADLFKLDLTTLTRLERMGEKSAENALNSLEKAKSTTLARFIFALGIREVGEATALNLANHFKTLDALKAADLEELQQVPDVGEVVANRIFVFWREAHNVAVVDDLIAQGVHWETVEVKEASENLFKDKTVVLTGTLTQMGRNEAKALLQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVLTEDEFLEQVNILN
>NZ_CP031238.1|WP_114892517.1|1206760_1207747_-|cell-division-protein-ZipA
MDLNTILIIVGILALVALIVHGLWSNRREKSKYFDKANKFDRTSHVQRSHTQEEMQPTNANLSHVTTAQANAPIRHQVMPNSAVIQEPVDYRQSEKSVDDIKISIPNVQPVYDMGNHRSEPLKPTQPQYDMPTPNSVANMTLEQIEEQSQNASFDGINSSSPELRAQLAELAHEERQVDYNVSFNEPKAETTTKHKQTTGYIQLYLIPKSSDQFNGAKLVQALENLGFILGEDEMYHRHLDLSVASPVLFSVANLEQPGTFDAYNLVDFSTVGIVFFMQLPSPGNNLANLRMMIRAAHTLAEDLQGIVLTEEQEIFDENAEQAYLARV
>NZ_CP031238.1|WP_046952751.1|1207899_1208718_+|sulfate-transporter-CysZ
MLNPNELKSGFHYFVMGWHYITQKGLRRFVIIPILLNTVLLCGLFWLFISQITSAIDWVMNFIPDWLSFLSVILLTLSILTILLLFYFTFTTLSGFIAAPFNGLLAEKVEKMLTGENINDDSLVDVMRDVPRMLAREWQKLRYSLPKIVALFLLSFIPLVGQTIVPVLTFLFTCWMMAIQYCDYPFDNHKVSFDIMKNALGNQRTQSLTFGGLVTCCTFVPVINLLIMPVAVCGATVMWVENYRNDLRFNMNRPSSAQTGIEVRSENTGIVK
>NZ_CP031238.1|WP_046952750.1|1208817_1209768_+|cysteine-synthase-A
MTIYADNSYSIGNTPLVRLKHFGHNGNVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTLTKGKEIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLRGLGVNLVLTEGAKGMKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVIVAGVGTGGTITGISRAIKLDFGKQITSVAVEPVESPVITQTLAGEEVKPGPHKIQGIGAGFIPKNLDLSIIDRVETVDSDTALATARRLMAEEGILAGISSGAAVAAADRLAKLPEFADKLIVVILPSASERYLSTALFEGIEG
>NZ_CP031238.1|WP_114892518.1|1209841_1210603_-|hypothetical-protein
MKFIRLTLYIFEGADAWDYIHAEDPLNIFELTQTKGRTIDYLRFIAETLPGLQQTSRLLYIIKEVERIRKRQENPIYDLNQIPSAKFQDIGLKLAVINQLMFKDETLRPKFFLEIFREEYKKYFLNPLYGLDREKSGEYMKNLDIPVSLLNKIKSLEINPTSEFYQQIYIKKIFDHSEFFLKAPRNSQYIPLFNIEYSTSDIENELSLLPNLKEIRINLSKENSNKKFSLSDLGLHEYVVKILENKNIKIVIN
>NZ_CP031238.1|WP_114892519.1|1210568_1210880_-|hypothetical-protein
MLGNILKIARAGVLAFGAKKIYELIQDKKLEPSEIEEHWKDDYREREARRAMKEEPDPAMKLAKGGTPNLLETEEFYQELKKTLPKRALEWTDEIYSFDIIYF
>NZ_CP031238.1|WP_114892520.1|1211004_1211298_-|YkgJ-family-cysteine-cluster-protein
MEANTPFPCNACGKCCRHVNLSEQTAYLDRGDGVCHYFNESTNLCSIYETRPLVCRVEDYYKTYLTHICDWDEFIVINQKICEQLQKCEPTLQSSYL
>NZ_CP031238.1|WP_114892521.1|1211287_1212925_-|hypothetical-protein
MTTTVVETEFDVLKEFEKTVLEKLVQSFGLDFILLNDKLGGDVDTIHNVRQGIFATEKEKEKYQNRSKYDSHQYHGDQRYIQYNKHLSELKKQGNLTDGYTHKQFDPNDIINLDHIISANEIHNDPARILAEQNGVALANDKSNFAPTHQAINKAKNASKMSNFVDSMDKRVAYKKEELQKIKEKLKDNSLSINEKQKLESKERNAEEYIKAFEAVDKKQMLEKDKKAREIYNTKINFAYYSSSKFFKNTAKEAGKKGLLMGGRQAIGMIIAEIWFELKEKLPLIYKEIKDNFKLEKFLERVKETLENIFERVKARFNDLINSFKNGILSGIISSLHMTVMNIFTTSTKMVGKIIREMWDTLVQTAKVAFFNPDNLATGDLLKEILKLISFGISTLIGTIINSQLQTYLKIPFGEEISMFLSGLVSGVLMLGFTYFLSYSQVMNKIWDYLNSFKTRYEKMIEHMKEINLELDRYLIELSKLEFNLNTDELSRFSTSLSQTNNELERKVLLIQEIEERGIDLGYDPKQKDGFKHHLVQIQKKYHGS
>NZ_CP031238.1|WP_114892522.1|1212972_1214043_-|chemotaxis-protein
MPLPFILGGAALLVAGAGVKKAADGFQKKSVADDIEKEADAEYQIAKYEFDKREKQTEEHLTILGNLQLKIGCDFLEFKTIAENLIKKLEHSSNKDIRVNVPEHKLNQITDVSISAAFYMSQVVYAGAAGAAAAYAVYGGVMALAAASTGTPIAALSGVSAYNATMAAIGGGAIAAGGFGMAGGAAVLGSVAAAPIIAVAGVAFDNFAKKKLESAKEFKTETEKAIKKLEIAEEYLLSVSTYSLKIQRALQEIYKIFTHYFNDLQKMDLLIRNGVNIDELEPAIINVVENGYLVAAILADIIDTPLFKVKKDKFGEPVLKDNALQIEVDEHGNQIINEEEIESDIQKALKDIEKFN
>NZ_CP031238.1|WP_114892523.1|1214077_1214770_-|DUF3944-domain-containing-protein
MAYRKDEDLEFLAKCSNEDLEPLVEILIKDKDGKTRYTEELTKSKKYMRYSPDHQKYWDDIAAEIQTFGANTIATIFRFGKGVTYKEILCDVCQDLKVNFNEKSSTSAIEKNLLDKVYTQAIEELSNEELKKLADAVDIPTTNLSHQATVAAVQYALMQMPYFVLQQMLINVIPMTIGRNLLLSRLIGVAAGPIGWALTGAWTAVDLAGAAKRVTVPAVIQVAVLRKKYR

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Crispr_ID: NZ_CP031238_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP031238_3

1592751-1592899

Orphan

Consensus_repeat	Method
TTGGAGCGGGAAACGAGGCTCGAACTCGCGACCCCGACCTTGGCAAGGT	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_CP031238_3

>merge|NZ_CP031238|3|1592751-1592899|CRISPRCasFinder
TTGGAGCGGGAAACGAGGCTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCAATAATGCTTCTATAATGTGAAATTGGAGCGGGAAACGAGGCTCGAACTCGCGACCCCAACCTTGGCAAGGT

>NZ_CP031238|3|3|1592751-1592899|CRISPRCasFinder
TTGGAGCGGGAAACGAGGCTCGAACTCGCGACCCCGACCTTGGCAAGGT	CGTGCTCTACCAACTGAGCTATTCCCGCAATAATGCTTCTATAATGTGAAA
TTGGAGCGGGAAACGAGGCTCGAACTCGCGACCCCAACCTTGGCAAGGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP031238.1\|WP_046953003.1\|1601391_1602156_+\|molybdate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|182641
NZ_CP031238.1\|WP_114892593.1\|1588886_1591478_+\|bifunctional-uridylyltransferase/uridylyl-removing-protein-GlnD	unknown	unknown	gnl\|CDD\|234980
NZ_CP031238.1\|WP_005628393.1\|1584786_1587144_-\|penicillin-binding-protein-1B	unknown	unknown	gnl\|CDD\|273952
NZ_CP031238.1\|WP_114892594.1\|1595178_1596906_+\|phosphoenolpyruvate-protein-phosphotransferase-PtsI	unknown	unknown	gnl\|CDD\|183017
NZ_CP031238.1\|WP_032825703.1\|1587150_1587504_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225654
NZ_CP031238.1\|WP_046953001.1\|1599840_1600296_+\|NfeD-family-protein	unknown	unknown	gnl\|CDD\|224501
NZ_CP031238.1\|WP_005628389.1\|1582234_1583569_-\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|235434
NZ_CP031238.1\|WP_005628403.1\|1593639_1594680_+\|small-ribosomal-subunit-biogenesis-GTPase-RsgA	unknown	unknown	gnl\|CDD\|237039
NZ_CP031238.1\|WP_046953543.1\|1583745_1584618_-\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	unknown	unknown	gnl\|CDD\|237571
NZ_CP031238.1\|WP_005628395.1\|1587505_1587850_-\|iron-sulfur-cluster-insertion-protein-ErpA	unknown	unknown	gnl\|CDD\|184186
NZ_CP031238.1\|WP_046953499.1\|1593020_1593569_-\|oligoribonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|235429
NZ_CP031238.1\|WP_046953544.1\|1581781_1582165_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031238.1\|WP_046953000.1\|1597560_1598760_+\|mannose-6-phosphate-isomerase,-class-I	unknown	unknown	gnl\|CDD\|380414
NZ_CP031238.1\|WP_005628387.1\|1580886_1581720_+\|PTS-mannose-transporter-subunit-IID	unknown	unknown	gnl\|CDD\|182965
NZ_CP031238.1\|WP_005628399.1\|1591553_1592621_+\|UDP-N-acetylglucosamine--undecaprenyl-phosphate-N-acetylglucosaminephosphotransferase	unknown	unknown	gnl\|CDD\|131433
NZ_CP031238.1\|WP_005628412.1\|1598839_1599757_+\|SPFH/Band-7/PHB-domain-protein	unknown	unknown	gnl\|CDD\|223407
NZ_CP031238.1\|WP_046952999.1\|1596966_1597467_+\|PTS-glucose-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|181859
NZ_CP031238.1\|WP_046953002.1\|1600387_1601155_-\|TOBE-domain-containing-protein	unknown	unknown	gnl\|CDD\|182640
NZ_CP031238.1\|WP_046953542.1\|1587986_1588793_+\|type-I-methionyl-aminopeptidase	unknown	unknown	gnl\|CDD\|235576
NZ_CP031238.1\|WP_005628404.1\|1594842_1595100_+\|phosphocarrier-protein-Hpr	unknown	unknown	gnl\|CDD\|182777

Protein	Function_ID	Function_description	E-value
NZ_CP031238.1\|WP_046953003.1\|1601391_1602156_+\|molybdate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|182641	PRK10677, modA, molybdate transporter periplasmic protein; Provisional.	1.4609e-98
NZ_CP031238.1\|WP_114892593.1\|1588886_1591478_+\|bifunctional-uridylyltransferase/uridylyl-removing-protein-GlnD	gnl\|CDD\|234980	PRK01759, glnD, bifunctional uridylyltransferase/uridylyl-removing protein GlnD.	0
NZ_CP031238.1\|WP_005628393.1\|1584786_1587144_-\|penicillin-binding-protein-1B	gnl\|CDD\|273952	TIGR02071, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1B. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of a particular bifunctional transglycosylase/transpeptidase in E. coli and other Proteobacteria, designated penicillin-binding protein 1B. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NZ_CP031238.1\|WP_114892594.1\|1595178_1596906_+\|phosphoenolpyruvate-protein-phosphotransferase-PtsI	gnl\|CDD\|183017	PRK11177, PRK11177, phosphoenolpyruvate-protein phosphotransferase PtsI.	0
NZ_CP031238.1\|WP_032825703.1\|1587150_1587504_-\|hypothetical-protein	gnl\|CDD\|225654	COG3112, COG3112, Uncharacterized protein conserved in bacteria [Function unknown].	5.19188e-56
NZ_CP031238.1\|WP_046953001.1\|1599840_1600296_+\|NfeD-family-protein	gnl\|CDD\|224501	COG1585, COG1585, Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	7.09863e-29
NZ_CP031238.1\|WP_005628389.1\|1582234_1583569_-\|argininosuccinate-synthase	gnl\|CDD\|235434	PRK05370, PRK05370, argininosuccinate synthase; Validated.	0
NZ_CP031238.1\|WP_005628403.1\|1593639_1594680_+\|small-ribosomal-subunit-biogenesis-GTPase-RsgA	gnl\|CDD\|237039	PRK12288, PRK12288, small ribosomal subunit biogenesis GTPase RsgA.	0
NZ_CP031238.1\|WP_046953543.1\|1583745_1584618_-\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	gnl\|CDD\|237571	PRK13961, PRK13961, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional.	0
NZ_CP031238.1\|WP_005628395.1\|1587505_1587850_-\|iron-sulfur-cluster-insertion-protein-ErpA	gnl\|CDD\|184186	PRK13623, PRK13623, iron-sulfur cluster insertion protein ErpA; Provisional.	9.95273e-82
NZ_CP031238.1\|WP_046953499.1\|1593020_1593569_-\|oligoribonuclease	gnl\|CDD\|235429	PRK05359, PRK05359, oligoribonuclease; Provisional.	7.61168e-133
NZ_CP031238.1\|WP_046952999.1\|1596966_1597467_+\|PTS-glucose-transporter-subunit-IIA	gnl\|CDD\|181859	PRK09439, PRK09439, PTS system glucose-specific transporter subunit; Provisional.	1.38862e-103
NZ_CP031238.1\|WP_046953000.1\|1597560_1598760_+\|mannose-6-phosphate-isomerase,-class-I	gnl\|CDD\|380414	cd07011, cupin_PMI_type_I_N, type I phosphomannose isomerase in eukaryotes and bacteria, N-terminal cupin domain. This subfamily contains type I phosphomannose isomerase (PMI; E.C. 5.3.1.8; also known as mannose-6-phosphate isomerase) found in eukaryotes and some bacteria such as Salmonella enterica. PMI catalyzes the reversible isomerization of fructose-6-phosphate (F6P) and mannose-6-phosphate (M6P), the first committed step in the synthesis of mannosylated glycoproteins. The active site, located within the N-terminal jelly roll-like beta-barrel cupin fold, contains a single essential zinc atom and forms a deep, open cavity large enough to contain M6P or F6P. PMI type I also has a C-terminal beta-barrel fold which has diverged considerably from the N-terminal domain and is not included here. This subfamily contains an alpha helical domain that is found in eukaryotic and some prokaryotic PMIs but is not present in their archaeal counterparts. F6P is a substrate for glycolysis and gluconeogenesis, while M6P is a substrate for production of activated mannose donor guanosine 5'-diphosphate D-mannose, an important precursor of mannosylated biomolecules such as glycoproteins, bacterial exopolysaccharides and fungal cell wall components. PMI is also essential for survival, virulence and possibly pathogenicity of some bacteria and protozoan parasites, as well as for cell wall integrity of certain yeasts. Thus, PMI is a potential target against fungal infections causing serious illness or death.	7.18724e-88
NZ_CP031238.1\|WP_005628387.1\|1580886_1581720_+\|PTS-mannose-transporter-subunit-IID	gnl\|CDD\|182965	PRK11103, PRK11103, PTS mannose transporter subunit IID.	7.51658e-147
NZ_CP031238.1\|WP_005628399.1\|1591553_1592621_+\|UDP-N-acetylglucosamine--undecaprenyl-phosphate-N-acetylglucosaminephosphotransferase	gnl\|CDD\|131433	TIGR02380, ECA_wecA, undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase. Members of this family are the WecA enzyme of enterobacterial common antigen biosynthesis, undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase. This family represents one narrow clade, and closely related sequences outside this clade may represent enzymes that catalyze the same specific reaction, but in the context of different pathways. A His-rich motif in a cytosolic loop of this integral membrane protein, shown critical to enzymatic activity for WecA is variously present or absent in the clade that includes Bacillus subtilis TagO teichoic acid biosynthesis enzyme, which may catalyze the same reaction as WecA. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	0
NZ_CP031238.1\|WP_005628412.1\|1598839_1599757_+\|SPFH/Band-7/PHB-domain-protein	gnl\|CDD\|223407	COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones].	7.3494e-78
NZ_CP031238.1\|WP_046953002.1\|1600387_1601155_-\|TOBE-domain-containing-protein	gnl\|CDD\|182640	PRK10676, PRK10676, DNA-binding transcriptional regulator ModE; Provisional.	6.94083e-83
NZ_CP031238.1\|WP_046953542.1\|1587986_1588793_+\|type-I-methionyl-aminopeptidase	gnl\|CDD\|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	3.68058e-161
NZ_CP031238.1\|WP_005628404.1\|1594842_1595100_+\|phosphocarrier-protein-Hpr	gnl\|CDD\|182777	PRK10850, PRK10850, phosphocarrier protein Hpr.	5.3974e-39

>NZ_CP031238.1|WP_005628399.1|1591553_1592621_+|UDP-N-acetylglucosamine--undecaprenyl-phosphate-N-acetylglucosaminephosphotransferase
MLSIFVTFLGAFLTLIVMRPVANWIGLVDKPNYRKRHQGAIPLIGGVSLFVGNLCYYLMEWDQLRLPYLYLFSIFVLLAIGILDDRFDISPFLRAGIQAILAILMIDLGNVYLDHLGQILGPFQLTLGSIGLIITVFATIAIINAFNMIDGIDGLLGGLSCVSFAAIGFLMYRDGQMDMAHWSFALIVSILPYLMLNLGIPFGPKYKVFMGDAGSTLIGFTIIWILLLSTQGKGHPMNPVTALWIIAIPLIDMVAIIYRRVRKGKSPFRPDRLHVHHLMVRAGLTSRQAFLLITFVSAICATIGILGEVYYVNEWAMFVGFFILFFLYVYSITRAWRITRWVRRMKRRAKRLKKA
>NZ_CP031238.1|WP_114892593.1|1588886_1591478_+|bifunctional-uridylyltransferase/uridylyl-removing-protein-GlnD
MLFPLSLSSPLTPSTVKIERENLKQFELENFSRYSIFELIENRCDFYDSLLIQLWQEIGLSEQQGISLIAVGGYGRREMFPLSDLDFLILVEQIPSPEIEEKITQFIQFLWDCGFEVGNSVRTLEQCESEGKQDITIATNLLEARFLTGNRPHFDALNELVKRADFWSKEDFFNAKVQEQIERYQRYHNTAYNLEPDIKYSPGGLRDLHLLYWVALRHSGALTLEAILQSGFIYPQEYQQLQESRAFLFKVRFALHLILKRYDNRLLFDRQIKVSELLGFRGEGNQAVEKMMKCFFQALHRISLISNLLIQHYRENVLSSNQDTVIDQLDDDFQLINQSLCLRNSLVFQEKPARILDIFFYLTQYEQADIHSDTLRQLQISLEQLPQKLCEIPEAREKFLRLFNQPNAIKRAFMPMHQYGVLTAYLPQWQAIEGLMQFDLFHIYTVDEHTLRVMLKLESFLSQESAEEHPIAHRIFSQLSDRSLLYIAALFHDIAKGRGGDHAELGVEDVADFAQLHGLDRREIDTLAWLVKSHLLMSITAQRRDIHDPEVVMNFAEAVQNQVRLDYLTCLTVADICATNSNLWNSWKRSLFASLYEFTEQQFAQGMKELLDYSEKSEENRKLAQQILTQDYSDIAPIFIEQLWACCPEDYFVRNTPKQIAWHTSLLVDFAESLLVKISNRFSLGGTEVFIYCQDQPHLFNKVVSTIGAKKFSIHDAQIITTQDGYVFDSFIITELNGELVEFDRRRELEQALTLALQSEKLPALSIAPNRQLQHFTVQTDVRFLHENKKEHTEMELVALDKPGLLAQVSQIFSELNLNLLNAKITTVGEKAEDFFILTNQFGQALDSQQREILRNVLYRNIG
>NZ_CP031238.1|WP_046953542.1|1587986_1588793_+|type-I-methionyl-aminopeptidase
MAIPIRTEKEIVKLREACKLASDVLVMIEPYVKAGVTTGELDRICHEYMVNEQKVIPACLNYHGFPKATCISINEVVCHGIPSEDKVLKNGDIVNIDVTVIKDGYFGDNSKMYIVGGETNIRSKKLVEAAQEALYVGLRTVKPGIRLNEIGKAVQKYTESQTFSVVREYCGHGVGTEFHCEPQVLHYYADDGGVILKPGMVFTIEPMINAGKKEVRVMGDGWTVKTKDRSHSAQYEHQIVVTETGCEVMTIRDEEIAEGRISRIMVNV
>NZ_CP031238.1|WP_005628395.1|1587505_1587850_-|iron-sulfur-cluster-insertion-protein-ErpA
MTDNIAVPLIFTDAAANKVKSLISEEENTNLKLRVYITGGGCSGFQYGFTFDEKVNEGDLTIEKSGVQLVIDPMSLQYLIGGTVDYTEGLEGSRFTVNNPNATSTCGCGSSFSI
>NZ_CP031238.1|WP_032825703.1|1587150_1587504_-|hypothetical-protein
MDFQFTHYQGNVSVKCSMEHIALANWFNTEVRSNPKAILTALSTAQSLSENQEEILIGAEYTLFLDADEIMVRANNLAIETDEILEDDFHYYDEESIAFCGTQDFIHFLEAYVDFIS
>NZ_CP031238.1|WP_005628393.1|1584786_1587144_-|penicillin-binding-protein-1B
MTTENVQKNPEEKIPKKRSSFKSFLLKVAFTGAVLTVFYGGYLDWQIRSKMDGQIWRLPAEVYSRIESVKIADNLAFDEVIQILLDNEYRQTTMVAAPGDFKLEDDTIVVLRRAFPFPDKPEPQRVLRLRFVDNKLNRIEDLVAVKAIDEFRLAPKLIAMLESDNEDRLAIPLQNYPRLLIDALILTEDRRFYDHHGINPVGIIRALITNIRAGQTVQGGSTLTQQLVKNLFLSSERTITRKANEALMSLVLDWRYDKNRILETYLNEIYLGQNGDTQIHGFELASQFYFGRSIREISLDQIALLVGMVKGPSLYNPWRNPQNALERRNVVLKLMLEHKMIGDELYQLLSQRPLGVQQKGQISRKYPSFIQTLQADLRRELGEHKISSLLGARIFTTMDLKQQAQAENAVVNTVSQLQLKTKNPYLEGAMIVADYRVGEIRAVVGGLQTQYAGFNRALMAKRQIGSLVKPSIYLTALSNPEQFRLNTPINNQPITINVKGSPPWQPRNYDKKYSGSVMLMDALARSLNIPTVNIGMKVGLSKVIDTQKAMGWDNVEIPKVPAMLLGAYTISPYDVTKLYQTIANQGGRIELTTVDTIADRQGNIIYQHDKTAKQVVPQEAAFQTLFAMQQTVERGTARSLQNDYADLRLAGKTGTTNDARDTWFVGIDGKNISTVWLGRDDNGETKLTGASGALQIYKDYLSHTYIEKLKLNKPANMKWVGITQHGSWDCDSNRVIPVWVNNGQNFCGGTPNASPSPATPPAETEISPRQESVWDVLDNPNPPAQ
>NZ_CP031238.1|WP_046953543.1|1583745_1584618_-|phosphoribosylaminoimidazolesuccinocarboxamide-synthase
MTQQLPTLSLKKIYSGKVRDLYEIDDKRMLMVASDRLSAFDVILDDPIPRKGEILTQISNFWFNKLAHIMPNHFTGESVYDVLPKEEADLVKDRAVVCKRLNPIKIESIVRGYLTGSGLKDYKQTGTICGLKLPEGLVEASKLPEPIFTPSSKEAVGNHDINISYAECEKLIGADLAAQVKEKAIALYTAAAEYALTKGIIICDTKFEFGLDENGTLTLMDEVLTPDSSRFWSIDTYQEGINPPSFDKQFVRDWLENSGWNKQAPAPKVPENIIQKTVDKYQEALDLLTK
>NZ_CP031238.1|WP_005628389.1|1582234_1583569_-|argininosuccinate-synthase
MSNTILQHLPEGQKVGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEDDYSAIPKKAMAYGAENARLIDCRSQLAHEGIAAIQCGAFHISTGGIPYFNTTPLGRAVTGTMLVAAMKEDDVNIWGDGSTFKGNDIERFYRYGLLTNPNLKIYKPWLDPQFIEELGGRFEMSQFLIENGFDYKMSVEKAYSTDSNMLGATHEAKDLEQLSTGMKIVKPIMGVAFWDDKVEIKPETVTVTFEEGVPVALNGKRFDNAVDIILEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALLHIAYERLVTGIHNEDTIEQYRINGIRLGRLLYQGRWFDPQALMLRETAQRWVAKAITGTVTLELRRGNDFTILNTESPNLTYEAERLSMEKVEDAPFDPIDRIGQLTMRNLDVSDTRGKLGIYAQTGLLSAIKDSVLPQLGKK
>NZ_CP031238.1|WP_046953544.1|1581781_1582165_+|hypothetical-protein
MKLSELIQAPPSETYIKNSSRLVSGLFVIGGLLYYPTNGYGTVIALALALIVLVGQKMLLTQANKDFADMYQAKALFEKTQNYDYLRFIMACSEQMLKDNKVLSDKAKNEIHKLQAFSQGELEKMGE
>NZ_CP031238.1|WP_005628387.1|1580886_1581720_+|PTS-mannose-transporter-subunit-IID
MSEQKVTLTKGDILSTYFRSTFLLGSFNFERMQSMGFCVSMIPTIKRLYSKKEDQAAALKRHLEFFNTQPWVGSAIMGVTAAMEQERANGAKDVDDAAISGVKVGLMGPLAGVGDPIFWGTLRPVLAALGAGIALTSSILGPLLFFILINVIRAVTRWYGFKYGYEKGTEIVSDMGGGRLQKITQGASILGLFVMGSLVSKWTSINVPLELTRYKNQLGEEVVVTLQGVLNDLLPGLLALLLTFLCMYLLRKKVNAMVIIFGLFGVGILGYWAGILA
>NZ_CP031238.1|WP_046953499.1|1593020_1593569_-|oligoribonuclease
MSFDKQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQSNELLNKMNDWCQKTHSENGLIERVKTSKLTERAAELQTLDFLKKWVPKGASPICGNSIAQDKRFLVKYMPDLADYFHYRHLDVSTLKELAARWKPEILEGFKKENTHLALDDIRESIKELAYYREHFMKLD
>NZ_CP031238.1|WP_005628403.1|1593639_1594680_+|small-ribosomal-subunit-biogenesis-GTPase-RsgA
MAKRKLTQNQTRRIQSNNAKTLHRHKKKEIEWSDEMLGESQEGVVVTRYSIHADVENEQGEIYRCNLRRTLSSLVVGDKVVWRKGNEQLQGVSGVIEAIHPRENEISRPDYYDGLKPIAANIDRIIIVSAVLPTLSLNIIDRYLVVCEIAGITPLIVLNKVDLLSQEQRQEVEKDLKIYQDIGYEILMISAKSGENMEKLTALLAQGTAIFVGQSGVGKSSLINHILPRVNAQVGDVSETSGLGQHTTTSSRLYHLPQGGNLIDSPGIREFGLWHLDAEQITKGYREFQYVLGTCKFRDCKHLSDPGCALREAVEQGKISPVRYDNYHRLIESLSETKSQRHFSAV
>NZ_CP031238.1|WP_005628404.1|1594842_1595100_+|phosphocarrier-protein-Hpr
MYSKDVEITAPNGLHTRPAAQFVKEAKAFSSDITVTSAGKSASAKSLFKLQTLGLTQGTVITISAEGEDEQQAVEHLVALIPTLE
>NZ_CP031238.1|WP_114892594.1|1595178_1596906_+|phosphoenolpyruvate-protein-phosphotransferase-PtsI
MISGILASPGIAFGKALVLKEEKIVLDTQKITDDQIDAEVARFYEGRALAVEQLNSIRERALISLGEEKAAIFEGHLMILEDEELEEEILDYLRSNKVNAAVAASKIIDQQVTMLSEIDDEYLKERAGDIRDIGNRLIKNILGMYIVDLGDIQEESILVAYDLTPSETAQLNLEKVLGVVTDIGGRTSHTSIMARSLELPAIVGTNNVTELVNTGDYLILDAINNQVYINPTQSQIDELKTLEAKISQEKAELAKLKDLPAITLDGHKVDVVANIGTIRDCEGADRNGAEGIGLYRTEFLFMDREQLPTEEEQFIAYKEVVEAMNGRLTVLRTMDIGGDKELPYLDLPKEMNPFLGWRAIRIVLDRREILNAQLRAVLRASAFGKLAVMFPMIISVEEIRELKAVIETLKAELRAEGKAFDEHIQVGVMVETPSAAVNAKFLAKEVDFFSIGTNDLTQYTLAVDRGNELISHLYNPMQPSVLGLIKQVINASHAEGKWTGMCGELAGDERATLLLLGMGLDEFSMSAISVPRIKKLIRNVNFQDAKALANAALQKPTASEIEQLIEEFLAENALN
>NZ_CP031238.1|WP_046952999.1|1596966_1597467_+|PTS-glucose-transporter-subunit-IIA
MGLFDKLFGSKENKSVEVEIYAPISGEIVNIEDVPDVVFSEKIVGDGVAIRPTGNKIVAPVDGVIGKIFETNHAFSMESKEGVELFVHFGIDTVELKGEGFTRIAQEGQSVKRGDTVIEFDLPLLESKAKSVLTPVVISNMDEISCIVKKLGEVVAGESVVLSLTK
>NZ_CP031238.1|WP_046953000.1|1597560_1598760_+|mannose-6-phosphate-isomerase,-class-I
MIYKLTGSLQNYVWGGHQYIPQLLNIPAEENQYYAEWWLGAHNSSPSTIEVDGKNVLLTEFLQKNPTALGAQSRASFGDELPYLLKILDVAQPLSIQLHPTKTQAEIGFSEENAKGIDLKASTRTYKDNNHKPEMMIALSDFWLLHGFKNKSDIIKTLEARSSLVPLAKKLHEQDLHAFYADIMQAEQAQLYQWLSPILLESQVAYEANNLDLTNPDYWVLYTIDAMNISLDKLDAGLICFYLFNIVHLKKGEGIYQDAGIPHAYLRGQNIELMACSDNVIRGGLTPKYVDIPELLKIVDCREVEPKIIPSAPQDTRIFTYATPAKDFALQNIQYECGETHHLKAQSASILLVMNGQLNLRSETTALSLKQGEAAFITANASYEVEGLIEGYAVVAKLP
>NZ_CP031238.1|WP_005628412.1|1598839_1599757_+|SPFH/Band-7/PHB-domain-protein
MLDGFAISTLIFVILVALILFSTVKTVPQGYNWTIERFGRYTRTLMPGLNLVVPFVDRIGRKINMMEQVLDIPSQEVISKDNANVSIDAVCFVQVIDARSAAYEVNHLEQAIINLTMTNIRTVLGSMELDEMLSQRDSINSRLLAIVDEATNPWGIKVTRIEIRDVRPPRELIDSMNAQMKAERNKRAEVLEAEGIRQAQILRAEGEKQARILKAEGERQEAFLQAEARERAAEAEAKATQMVSEAITSGDTKAINYFIAQKYTEALKEIGSSGNSKVVLMPLEAGNLIGSVAGIAELLKGDKKS
>NZ_CP031238.1|WP_046953001.1|1599840_1600296_+|NfeD-family-protein
MADWLINWTLWHWLILGFILLIGEVLTPGIFLLWWGLAALVTAFVQFLFPSLSLASLAIFYALLACILSVIWWKYQHGKDRHDQSHSTLNQRDHALLGKQGVVQELGANGIGRGAFGDTTWRIQGDNLTVGALIEVERVDGITLIVKNLSN
>NZ_CP031238.1|WP_046953002.1|1600387_1601155_-|TOBE-domain-containing-protein
MKNTEILLTIKLQQALFIDPKRVRLLKEIQQCGSINQAAKNAKVSYKSAWDHLEAMNKISPRPLLERNTGGKNGGGTALTTYAERLLQLYDLLERTQEHAFHILQDESVPLDSLLTATARFSLQSSARNQFFGRVAQQRIIDSRCVVDVNVQGLPTPLQVSITTKSSARLKLITEKEVMLMFKAPWVKISEKPLDNQSNQFPVNIKSLNEEEAILQFAESDIEFCATVHQPNQWQIGQQVWIHIDQEQIILATLG
>NZ_CP031238.1|WP_046953003.1|1601391_1602156_+|molybdate-ABC-transporter-substrate-binding-protein
MKKLTKISTALLIAGLGFSFAASAKVTVFAAASMTDALQQVAKDYAKQNPKNEIVFSFASSSTLAKQVEEGAPADIFVSASNKWMKYLSEKDLTVKETEKVLVGNDLVLIAPVKSAVNSVDIAKGEWINALKDSYLSVGDPAHVPAGQYAEEALTKLNLWDKVQDRLARAKDVRGALALVERAEAPYGIVYSTDAKVSQQVKTVAVFPADSHKPVVYPVSIVKGHDNADSRDFLKYLESDAAKKVLVGYGFSAK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP031238_2	2.3\|1204198\|32\|NZ_CP031238\|PILER-CR	1204198-1204229	32	NC_004846	Haemophilus influenzae biotype aegyptius plasmid pF3031, complete sequence	21080-21111	1	0.969
NZ_CP031238_2	2.3\|1204198\|32\|NZ_CP031238\|PILER-CR	1204198-1204229	32	NC_004058	Haemophilus influenzae biotype aegyptius BPF plasmid pF3028, complete sequence	21026-21057	1	0.969
NZ_CP031238_2	2.8\|1204196\|34\|NZ_CP031238\|CRISPRCasFinder,CRT	1204196-1204229	34	NC_004846	Haemophilus influenzae biotype aegyptius plasmid pF3031, complete sequence	21078-21111	1	0.971
NZ_CP031238_2	2.8\|1204196\|34\|NZ_CP031238\|CRISPRCasFinder,CRT	1204196-1204229	34	NC_004058	Haemophilus influenzae biotype aegyptius BPF plasmid pF3028, complete sequence	21024-21057	1	0.971
NZ_CP031238_2	2.3\|1204198\|32\|NZ_CP031238\|PILER-CR	1204198-1204229	32	NC_021776	Vibrio phage vpms1, complete genome	13492-13523	4	0.875
NZ_CP031238_2	2.2\|1204132\|32\|NZ_CP031238\|PILER-CR	1204132-1204163	32	NZ_CP017590	Pantoea stewartii subsp. stewartii DC283 plasmid pDSJ09, complete sequence	90020-90051	7	0.781
NZ_CP031238_2	2.3\|1204198\|32\|NZ_CP031238\|PILER-CR	1204198-1204229	32	MN693487	Marine virus AFVG_25M100, complete genome	25461-25492	7	0.781
NZ_CP031238_2	2.2\|1204132\|32\|NZ_CP031238\|PILER-CR	1204132-1204163	32	NZ_CP024882	Citrobacter freundii strain AR_0022 plasmid unitig_1_pilon, complete sequence	5462-5493	8	0.75
NZ_CP031238_2	2.2\|1204132\|32\|NZ_CP031238\|PILER-CR	1204132-1204163	32	NZ_CP032180	Citrobacter freundii strain AR_0116 plasmid unnamed2, complete sequence	135220-135251	8	0.75
NZ_CP031238_2	2.2\|1204132\|32\|NZ_CP031238\|PILER-CR	1204132-1204163	32	NZ_CP037863	Citrobacter sp. LY-1 plasmid unnamed2, complete sequence	100858-100889	8	0.75
NZ_CP031238_2	2.3\|1204198\|32\|NZ_CP031238\|PILER-CR	1204198-1204229	32	KX171213	Staphylococcus phage vB_SscM-2, complete genome	21309-21340	8	0.75
NZ_CP031238_2	2.3\|1204198\|32\|NZ_CP031238\|PILER-CR	1204198-1204229	32	NC_047767	Staphylococcus phage vB_SscM-1, complete genome	21309-21340	8	0.75
NZ_CP031238_2	2.3\|1204198\|32\|NZ_CP031238\|PILER-CR	1204198-1204229	32	MN694586	Marine virus AFVG_250M370, complete genome	24703-24734	8	0.75
NZ_CP031238_2	2.4\|1204264\|34\|NZ_CP031238\|PILER-CR	1204264-1204297	34	NZ_CP013615	Clostridium perfringens strain JP838 plasmid pJFP838A, complete sequence	197435-197468	9	0.735
NZ_CP031238_2	2.4\|1204264\|34\|NZ_CP031238\|PILER-CR	1204264-1204297	34	NZ_CP020064	Klebsiella pneumoniae strain AR_0117 plasmid unitig_3, complete sequence	55534-55567	9	0.735
NZ_CP031238_2	2.4\|1204264\|34\|NZ_CP031238\|PILER-CR	1204264-1204297	34	NZ_CP013238	Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence	520728-520761	9	0.735
NZ_CP031238_2	2.4\|1204264\|34\|NZ_CP031238\|PILER-CR	1204264-1204297	34	NZ_CP021753	Klebsiella pneumoniae strain AR_0113 plasmid unitig_2, complete sequence	16750-16783	9	0.735
NZ_CP031238_2	2.4\|1204264\|34\|NZ_CP031238\|PILER-CR	1204264-1204297	34	NZ_CP008791	Klebsiella oxytoca KONIH1 plasmid pKPC-727, complete sequence	197115-197148	9	0.735
NZ_CP031238_2	2.4\|1204264\|34\|NZ_CP031238\|PILER-CR	1204264-1204297	34	KY940546	Klebsiella pneumoniae plasmid pUCLA3, complete sequence	50067-50100	9	0.735
NZ_CP031238_2	2.4\|1204264\|34\|NZ_CP031238\|PILER-CR	1204264-1204297	34	NZ_CP021545	Klebsiella pneumoniae strain AR_0112 plasmid tig00000001, complete sequence	100139-100172	9	0.735
NZ_CP031238_2	2.4\|1204264\|34\|NZ_CP031238\|PILER-CR	1204264-1204297	34	NZ_CP006922	Klebsiella pneumoniae 30684/NJST258_2 plasmid pNJST258C1, complete sequence	28495-28528	9	0.735
NZ_CP031238_2	2.4\|1204264\|34\|NZ_CP031238\|PILER-CR	1204264-1204297	34	NZ_CP021857	Klebsiella pneumoniae strain AR_0125 plasmid tig00000002_pilon, complete sequence	88558-88591	9	0.735
NZ_CP031238_2	2.7\|1204130\|34\|NZ_CP031238\|CRISPRCasFinder,CRT	1204130-1204163	34	NZ_CP024882	Citrobacter freundii strain AR_0022 plasmid unitig_1_pilon, complete sequence	5460-5493	9	0.735
NZ_CP031238_2	2.7\|1204130\|34\|NZ_CP031238\|CRISPRCasFinder,CRT	1204130-1204163	34	NZ_CP032180	Citrobacter freundii strain AR_0116 plasmid unnamed2, complete sequence	135218-135251	9	0.735
NZ_CP031238_2	2.7\|1204130\|34\|NZ_CP031238\|CRISPRCasFinder,CRT	1204130-1204163	34	NZ_CP037863	Citrobacter sp. LY-1 plasmid unnamed2, complete sequence	100858-100891	9	0.735
NZ_CP031238_2	2.4\|1204264\|34\|NZ_CP031238\|PILER-CR	1204264-1204297	34	NZ_LR134421	Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 12	16316-16349	11	0.676

1. spacer 2.3|1204198|32|NZ_CP031238|PILER-CR matches to NC_004846 (Haemophilus influenzae biotype aegyptius plasmid pF3031, complete sequence) position: , mismatch: 1, identity: 0.969

tgcctttcttcagctcaaggtagaggcattaa	CRISPR spacer
tgcctttcttctgctcaaggtagaggcattaa	Protospacer
*********** ********************

2. spacer 2.3|1204198|32|NZ_CP031238|PILER-CR matches to NC_004058 (Haemophilus influenzae biotype aegyptius BPF plasmid pF3028, complete sequence) position: , mismatch: 1, identity: 0.969

tgcctttcttcagctcaaggtagaggcattaa	CRISPR spacer
tgcctttcttctgctcaaggtagaggcattaa	Protospacer
*********** ********************

3. spacer 2.8|1204196|34|NZ_CP031238|CRISPRCasFinder,CRT matches to NC_004846 (Haemophilus influenzae biotype aegyptius plasmid pF3031, complete sequence) position: , mismatch: 1, identity: 0.971

tatgcctttcttcagctcaaggtagaggcattaa	CRISPR spacer
tatgcctttcttctgctcaaggtagaggcattaa	Protospacer
************* ********************

4. spacer 2.8|1204196|34|NZ_CP031238|CRISPRCasFinder,CRT matches to NC_004058 (Haemophilus influenzae biotype aegyptius BPF plasmid pF3028, complete sequence) position: , mismatch: 1, identity: 0.971

tatgcctttcttcagctcaaggtagaggcattaa	CRISPR spacer
tatgcctttcttctgctcaaggtagaggcattaa	Protospacer
************* ********************

5. spacer 2.3|1204198|32|NZ_CP031238|PILER-CR matches to NC_021776 (Vibrio phage vpms1, complete genome) position: , mismatch: 4, identity: 0.875

-tgcctttcttcagctcaaggtagaggcattaa	CRISPR spacer
atgcctatc-tcagctgaaggtagcggcattaa	Protospacer
 ***** ** ****** ******* ********

6. spacer 2.2|1204132|32|NZ_CP031238|PILER-CR matches to NZ_CP017590 (Pantoea stewartii subsp. stewartii DC283 plasmid pDSJ09, complete sequence) position: , mismatch: 7, identity: 0.781

agtattagt----gccgggtgcggtgggattgatgc	CRISPR spacer
----tcactgacggccgggtgcggtggtattgatgc	Protospacer
    *.* *    ************** ********

7. spacer 2.3|1204198|32|NZ_CP031238|PILER-CR matches to MN693487 (Marine virus AFVG_25M100, complete genome) position: , mismatch: 7, identity: 0.781

tgcctttcttcagctcaaggtagaggcattaa	CRISPR spacer
ttccttcgttcagctcaaggtagagaatttac	Protospacer
* ****. *****************.  ***

8. spacer 2.2|1204132|32|NZ_CP031238|PILER-CR matches to NZ_CP024882 (Citrobacter freundii strain AR_0022 plasmid unitig_1_pilon, complete sequence) position: , mismatch: 8, identity: 0.75

agtattagtgccgggtgcggtgggattgatgc	CRISPR spacer
tccctcaatgccggctgcggtggcattgatgc	Protospacer
  . *.*.****** ******** ********

9. spacer 2.2|1204132|32|NZ_CP031238|PILER-CR matches to NZ_CP032180 (Citrobacter freundii strain AR_0116 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

agtattagtgccgggtgcggtgggattgatgc	CRISPR spacer
tccctcaatgccggctgcggtggcattgatgc	Protospacer
  . *.*.****** ******** ********

10. spacer 2.2|1204132|32|NZ_CP031238|PILER-CR matches to NZ_CP037863 (Citrobacter sp. LY-1 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

agtattagtgccgggtgcggtgggattgatgc	CRISPR spacer
tccctcaatgccggctgcggtggcattgatgc	Protospacer
  . *.*.****** ******** ********

11. spacer 2.3|1204198|32|NZ_CP031238|PILER-CR matches to KX171213 (Staphylococcus phage vB_SscM-2, complete genome) position: , mismatch: 8, identity: 0.75

tgcctttcttcagctcaaggtagaggcattaa	CRISPR spacer
ttagttatatcagttcaaggtagaggtattaa	Protospacer
*   ** . ****.************.*****

12. spacer 2.3|1204198|32|NZ_CP031238|PILER-CR matches to NC_047767 (Staphylococcus phage vB_SscM-1, complete genome) position: , mismatch: 8, identity: 0.75

tgcctttcttcagctcaaggtagaggcattaa	CRISPR spacer
ttagttatatcagttcaaggtagaggtattaa	Protospacer
*   ** . ****.************.*****

13. spacer 2.3|1204198|32|NZ_CP031238|PILER-CR matches to MN694586 (Marine virus AFVG_250M370, complete genome) position: , mismatch: 8, identity: 0.75

tgcctttcttcagctcaaggtagaggcattaa	CRISPR spacer
ttccttcgttcagctcaaggtagagaattttc	Protospacer
* ****. *****************.  **

14. spacer 2.4|1204264|34|NZ_CP031238|PILER-CR matches to NZ_CP013615 (Clostridium perfringens strain JP838 plasmid pJFP838A, complete sequence) position: , mismatch: 9, identity: 0.735

gttattatgctatttattagcaaaaaaagaaaaa	CRISPR spacer
cttttaatgctatttattagcaaaaaccttttaa	Protospacer
 ** * ********************      **

15. spacer 2.4|1204264|34|NZ_CP031238|PILER-CR matches to NZ_CP020064 (Klebsiella pneumoniae strain AR_0117 plasmid unitig_3, complete sequence) position: , mismatch: 9, identity: 0.735

gttattatgctatttattagcaaaaaaagaaaaa	CRISPR spacer
atcattattctttttattagcaaaaaacagaact	Protospacer
.*.***** ** *************** ..**

16. spacer 2.4|1204264|34|NZ_CP031238|PILER-CR matches to NZ_CP013238 (Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence) position: , mismatch: 9, identity: 0.735

gttattatgctatttattagcaaaaaaagaaaaa	CRISPR spacer
agcatcttcatatgtattagcaaaaacagaaaaa	Protospacer
. .**. *  *** ************ *******

17. spacer 2.4|1204264|34|NZ_CP031238|PILER-CR matches to NZ_CP021753 (Klebsiella pneumoniae strain AR_0113 plasmid unitig_2, complete sequence) position: , mismatch: 9, identity: 0.735

gttattatgctatttattagcaaaaaaagaaaaa	CRISPR spacer
atcattattctttttattagcaaaaaacagaact	Protospacer
.*.***** ** *************** ..**

18. spacer 2.4|1204264|34|NZ_CP031238|PILER-CR matches to NZ_CP008791 (Klebsiella oxytoca KONIH1 plasmid pKPC-727, complete sequence) position: , mismatch: 9, identity: 0.735

gttattatgctatttattagcaaaaaaagaaaaa	CRISPR spacer
atcattattctttttattagcaaaaaacagaact	Protospacer
.*.***** ** *************** ..**

19. spacer 2.4|1204264|34|NZ_CP031238|PILER-CR matches to KY940546 (Klebsiella pneumoniae plasmid pUCLA3, complete sequence) position: , mismatch: 9, identity: 0.735

gttattatgctatttattagcaaaaaaagaaaaa	CRISPR spacer
atcattattctttttattagcaaaaaacagaact	Protospacer
.*.***** ** *************** ..**

20. spacer 2.4|1204264|34|NZ_CP031238|PILER-CR matches to NZ_CP021545 (Klebsiella pneumoniae strain AR_0112 plasmid tig00000001, complete sequence) position: , mismatch: 9, identity: 0.735

gttattatgctatttattagcaaaaaaagaaaaa	CRISPR spacer
atcattattctttttattagcaaaaaacagaact	Protospacer
.*.***** ** *************** ..**

21. spacer 2.4|1204264|34|NZ_CP031238|PILER-CR matches to NZ_CP006922 (Klebsiella pneumoniae 30684/NJST258_2 plasmid pNJST258C1, complete sequence) position: , mismatch: 9, identity: 0.735

gttattatgctatttattagcaaaaaaagaaaaa	CRISPR spacer
atcattattctttttattagcaaaaaacagaact	Protospacer
.*.***** ** *************** ..**

22. spacer 2.4|1204264|34|NZ_CP031238|PILER-CR matches to NZ_CP021857 (Klebsiella pneumoniae strain AR_0125 plasmid tig00000002_pilon, complete sequence) position: , mismatch: 9, identity: 0.735

gttattatgctatttattagcaaaaaaagaaaaa	CRISPR spacer
atcattattctttttattagcaaaaaacagaact	Protospacer
.*.***** ** *************** ..**

23. spacer 2.7|1204130|34|NZ_CP031238|CRISPRCasFinder,CRT matches to NZ_CP024882 (Citrobacter freundii strain AR_0022 plasmid unitig_1_pilon, complete sequence) position: , mismatch: 9, identity: 0.735

caagtattagtgccgggtgcggtgggattgatgc	CRISPR spacer
cctccctcaatgccggctgcggtggcattgatgc	Protospacer
*   . *.*.****** ******** ********

24. spacer 2.7|1204130|34|NZ_CP031238|CRISPRCasFinder,CRT matches to NZ_CP032180 (Citrobacter freundii strain AR_0116 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.735

caagtattagtgccgggtgcggtgggattgatgc	CRISPR spacer
cctccctcaatgccggctgcggtggcattgatgc	Protospacer
*   . *.*.****** ******** ********

25. spacer 2.7|1204130|34|NZ_CP031238|CRISPRCasFinder,CRT matches to NZ_CP037863 (Citrobacter sp. LY-1 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.735

caagtattagtgccgggtgcggtgggattgatgc	CRISPR spacer
cctccctcaatgccggctgcggtggcattgatgc	Protospacer
*   . *.*.****** ******** ********

26. spacer 2.4|1204264|34|NZ_CP031238|PILER-CR matches to NZ_LR134421 (Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 12) position: , mismatch: 11, identity: 0.676

gttattatgctatttattagcaaaaaaagaaaaa	CRISPR spacer
aaatcgaaattatttattaactaaaaaagaaaaa	Protospacer
.   . * ..*********.* ************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

396820 : 403331

Streptomyces_phage(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005627940.1\|396820_397144_-	thioredoxin	A0A1J0GW78	Streptomyces_phage	8.9e-17	43.4
WP_005627942.1\|397264_398260_-	2-hydroxyacid dehydrogenase	M1H502	Paramecium_bursaria_Chlorella_virus	7.6e-67	40.2
WP_032825634.1\|398272_399382_-	methionine biosynthesis PLP-dependent protein	A0A141ZJM2	Faustovirus	4.1e-13	26.8
WP_114892344.1\|400111_400642_-	inorganic diphosphatase	A0A2H4J8U1	uncultured_Caudovirales_phage	3.7e-20	36.2
WP_005627949.1\|400875_402192_+	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	5.3e-185	82.1
WP_046953135.1\|402281_403331_-	ferric ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	9.6e-20	39.3

DBSCAN-SWA_2

962714 : 1078373

114

uncultured_Caudovirales_phage(21.21%)

capsid,protease,tRNA,tail,terminase,portal,head,integrase,transposase

attL 1014842:1014866|attR 1029430:1029454

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_114892487.1\|962714_963266_+\|tRNA	tRNA threonylcarbamoyladenosine biosynthesis protein RimN	NA	NA	NA	NA
WP_114892488.1\|963269_964088_+	shikimate dehydrogenase	NA	NA	NA	NA
WP_114892489.1\|964084_964642_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA
WP_114892490.1\|964638_965403_-	glycosyltransferase family 2 protein	A0A1V0SAJ8	Catovirus	3.7e-05	30.6
WP_114892491.1\|965465_966749_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA
WP_114892492.1\|966745_967216_+	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	2.9e-24	41.9
WP_114892493.1\|967212_967425_+	YceK/YidQ family lipoprotein	NA	NA	NA	NA
WP_114892494.1\|967430_969446_+	DNA helicase Rep	A7KV33	Bacillus_phage	7.8e-119	40.1
WP_046953183.1\|969545_970433_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_005626623.1\|970538_971117_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_005626621.1\|971179_972517_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA
WP_005626619.1\|972669_973386_+	MgtC/SapB family protein	G3MA03	Bacillus_virus	5.7e-16	34.5
WP_005626617.1\|973550_974666_+	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_046953182.1\|974744_975689_+	alpha/beta hydrolase	Q8V549	Monkeypox_virus	1.1e-06	25.3
WP_005626613.1\|976226_976538_+	DUF5389 domain-containing protein	NA	NA	NA	NA
WP_005626609.1\|976574_977945_-	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	A0A2K9L821	Tupanvirus	8.4e-32	33.1
WP_005626607.1\|978100_978472_-	50S ribosomal protein L7/L12	NA	NA	NA	NA
WP_005626605.1\|978526_979018_-	50S ribosomal protein L10	NA	NA	NA	NA
WP_005626599.1\|979289_980660_-	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	5.7e-113	48.0
WP_005626596.1\|980682_981300_-	high frequency lysogenization protein HflD	NA	NA	NA	NA
WP_046953181.1\|981428_982433_+\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_005636074.1\|982453_982744_+	YfcZ/YiiS family protein	NA	NA	NA	NA
WP_046953180.1\|982798_983782_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_005626584.1\|983793_985170_-	chloride channel protein	A0A1X9I5Z9	Streptococcus_phage	1.3e-08	26.7
WP_005543325.1\|985438_985813_+	30S ribosomal protein S12	NA	NA	NA	NA
WP_005626581.1\|985969_986440_+	30S ribosomal protein S7	NA	NA	NA	NA
WP_005626577.1\|986524_988627_+	elongation factor G	E4ZFJ7	Streptococcus_phage	2.9e-60	27.7
WP_046942883.1\|988691_989876_+	elongation factor Tu	A0A1V0SGC3	Hokovirus	6.1e-31	27.2
WP_005628063.1\|990107_991406_+	trigger factor	NA	NA	NA	NA
WP_005628065.1\|991532_992114_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	1.3e-58	60.8
WP_005628067.1\|992122_993364_+\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	3.2e-123	55.9
WP_005628069.1\|993503_993920_+	preprotein translocase subunit SecE	NA	NA	NA	NA
WP_005628071.1\|993921_994479_+	transcription termination/antitermination protein NusG	NA	NA	NA	NA
WP_046953179.1\|994696_995332_-	DUF421 domain-containing protein	NA	NA	NA	NA
WP_046953178.1\|995331_995787_-	DUF3290 family protein	NA	NA	NA	NA
WP_005639292.1\|995863_996685_-	MetQ/NlpA family lipoprotein	NA	NA	NA	NA
WP_005629721.1\|996723_997413_-	ABC transporter permease	NA	NA	NA	NA
WP_046953177.1\|997402_998440_-	methionine ABC transporter ATP-binding protein MetN	G9BWD6	Planktothrix_phage	4.2e-36	40.0
WP_005629725.1\|998615_999170_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA
WP_046953239.1\|1005246_1006386_+	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA
WP_005625824.1\|1006395_1007307_+	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA
WP_005625825.1\|1007334_1008177_-	divergent polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_005625826.1\|1008176_1009409_-	murein hydrolase activator EnvC	A0A292GJG6	Xanthomonas_phage	2.0e-08	40.2
WP_005625827.1\|1009584_1010268_+	2,3-diphosphoglycerate-dependent phosphoglycerate mutase	NA	NA	NA	NA
WP_046953238.1\|1010345_1010948_+	hypothetical protein	NA	NA	NA	NA
WP_005625828.1\|1011033_1011246_-	50S ribosomal protein L31	NA	NA	NA	NA
WP_046953237.1\|1011421_1012558_+	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_005625838.1\|1012535_1012808_+	oxidative damage protection protein	NA	NA	NA	NA
WP_046953236.1\|1012822_1013899_+	membrane-bound lytic murein transglycosylase MltC	W6ARS2	Escherichia_phage	1.1e-05	28.8
1014842:1014866	attL	NA	NA	NA	NA
WP_046953234.1\|1015229_1016420_+\|capsid	phage major capsid protein	A0A2H4JED2	uncultured_Caudovirales_phage	8.4e-129	62.0
WP_046953233.1\|1016464_1017031_+\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	1.1e-51	63.8
WP_046953232.1\|1017032_1018265_+\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	6.6e-145	62.8
WP_046953231.1\|1018248_1018593_+\|head	phage head closure protein	A0A1J0GUY4	Halomonas_phage	2.8e-08	33.0
WP_046953230.1\|1018579_1018888_+\|head,tail	phage gp6-like head-tail connector protein	A0A2H4JD08	uncultured_Caudovirales_phage	2.0e-18	49.0
WP_046953229.1\|1018904_1019267_+	HNH endonuclease	A0A2H4JAS8	uncultured_Caudovirales_phage	2.5e-28	52.7
WP_005626376.1\|1019368_1019743_+\|terminase	phage terminase small subunit P27 family	A0A2H4JHS3	uncultured_Caudovirales_phage	1.7e-35	64.9
WP_046953228.1\|1019750_1021418_+\|terminase	terminase large subunit	A0A2H4JB64	uncultured_Caudovirales_phage	4.6e-242	69.6
WP_046953242.1\|1021741_1022026_+	hypothetical protein	NA	NA	NA	NA
WP_046953227.1\|1022223_1022607_+	hypothetical protein	NA	NA	NA	NA
WP_046953226.1\|1022707_1023547_+	hypothetical protein	NA	NA	NA	NA
WP_005760675.1\|1023718_1023940_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_046953241.1\|1024134_1024629_+	host cell division inhibitor Icd-like protein	NA	NA	NA	NA
WP_046953225.1\|1024621_1024870_+	hypothetical protein	NA	NA	NA	NA
WP_046953224.1\|1024862_1025063_+	hypothetical protein	NA	NA	NA	NA
WP_005629564.1\|1025052_1025259_+	hypothetical protein	NA	NA	NA	NA
WP_046953223.1\|1025245_1025794_+	hypothetical protein	NA	NA	NA	NA
WP_052748876.1\|1025795_1026239_+	hypothetical protein	NA	NA	NA	NA
WP_046953221.1\|1028162_1029389_-\|integrase	tyrosine-type recombinase/integrase	A0A0R6PH06	Moraxella_phage	2.4e-46	33.4
WP_046939867.1\|1029687_1030026_-	preprotein translocase subunit SecG	NA	NA	NA	NA
1029430:1029454	attR	NA	NA	NA	NA
WP_046953220.1\|1030134_1032090_-	DNA topoisomerase III	A0A1X9I6W8	Streptococcus_phage	7.7e-39	30.4
WP_005626527.1\|1032105_1032708_-	recombination protein RecR	NA	NA	NA	NA
WP_005629464.1\|1032770_1033100_-	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA
WP_046953219.1\|1033267_1034113_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA
WP_046953218.1\|1034186_1036787_-	penicillin-binding protein 1A	NA	NA	NA	NA
WP_114892495.1\|1036886_1037666_+	competence protein ComA	NA	NA	NA	NA
WP_046953216.1\|1037684_1038194_+	competence protein B	NA	NA	NA	NA
WP_046953215.1\|1038190_1038712_+	competence protein ComC	NA	NA	NA	NA
WP_046953214.1\|1038708_1039122_+	competence protein	NA	NA	NA	NA
WP_114892496.1\|1039131_1040475_+	type IV pilus secretin PilQ family protein	D0U174	Enterobacteria_phage	2.5e-20	25.9
WP_005626546.1\|1040471_1040927_+\|transposase	IS200/IS605 family transposase	NA	NA	NA	NA
WP_005626547.1\|1041128_1041815_+	ComF family protein	NA	NA	NA	NA
WP_005626550.1\|1041890_1042487_+	Fe-S biogenesis protein NfuA	NA	NA	NA	NA
WP_005626553.1\|1042555_1043353_+	NAD(+) diphosphatase	NA	NA	NA	NA
WP_005626555.1\|1043385_1043976_+	YjaG family protein	NA	NA	NA	NA
WP_005626557.1\|1044113_1044386_+	HU family DNA-binding protein	A7KV42	Bacillus_phage	8.5e-21	60.0
WP_005626560.1\|1044513_1045287_+	DeoR family transcriptional regulator	NA	NA	NA	NA
WP_005626562.1\|1045342_1047175_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	A7IW18	Paramecium_bursaria_Chlorella_virus	3.9e-133	44.2
WP_114892497.1\|1047353_1048379_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_162790467.1\|1048457_1048607_+	hypothetical protein	NA	NA	NA	NA
WP_005629744.1\|1048751_1050407_-	LTA synthase family protein	NA	NA	NA	NA
WP_114892498.1\|1051155_1052598_+\|tRNA	glutamate--tRNA ligase	A0A222YZ70	Escherichia_phage	2.3e-11	34.4
WP_005628052.1\|1052961_1054488_+	catalase	A0A2K9L0T1	Tupanvirus	4.7e-100	47.3
WP_005628053.1\|1054552_1055266_-	UMP kinase	NA	NA	NA	NA
WP_046952878.1\|1055396_1056956_+	phosphoethanolamine transferase	NA	NA	NA	NA
WP_044233196.1\|1057083_1057488_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_005642748.1\|1057502_1058291_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_046952879.1\|1058333_1059935_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_046952880.1\|1060050_1061223_+	lipid-A-disaccharide synthase	NA	NA	NA	NA
WP_046952881.1\|1061215_1061809_+	ribonuclease HII	A0A0N9QYD4	Chrysochromulina_ericina_virus	2.4e-23	40.0
WP_046952882.1\|1062032_1062578_-	YggT family protein	NA	NA	NA	NA
WP_005629627.1\|1062577_1063525_-	magnesium/cobalt transporter CorA	NA	NA	NA	NA
WP_005629625.1\|1063820_1064312_-	YajQ family cyclic di-GMP-binding protein	NA	NA	NA	NA
WP_005629623.1\|1064329_1065274_-	phosphoserine phosphatase	NA	NA	NA	NA
WP_005629621.1\|1065330_1065969_+	hemolysin regulation protein AhpA	NA	NA	NA	NA
WP_046952883.1\|1066080_1068078_+	transketolase	NA	NA	NA	NA
WP_005629617.1\|1068378_1069764_+	DASS family sodium-coupled anion symporter	NA	NA	NA	NA
WP_005629614.1\|1069869_1070718_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	4.0e-32	36.3
WP_046952884.1\|1071208_1073980_+	RNA polymerase-associated protein RapA	A0A1B1IUI1	uncultured_Mediterranean_phage	1.5e-19	33.6
WP_005629608.1\|1073982_1074642_+\|tRNA	bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA	NA	NA	NA
WP_005629606.1\|1074668_1075247_+\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_005643940.1\|1075276_1076029_+	DeoR/GlpR family transcriptional regulator	NA	NA	NA	NA
WP_005629599.1\|1076156_1076909_+	VacJ family lipoprotein	NA	NA	NA	NA
WP_005629596.1\|1076965_1077355_+	RidA family protein	NA	NA	NA	NA
WP_005629592.1\|1077521_1078373_+\|protease	protease HtpX	NA	NA	NA	NA

DBSCAN-SWA_3

1786400 : 1793626

Vibrio_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046953305.1\|1786400_1787390_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	9.3e-33	38.0
WP_005628674.1\|1787423_1789811_+\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_005628676.1\|1789812_1790103_+	integration host factor subunit alpha	Q2A099	Sodalis_phage	1.5e-10	38.2
WP_046953306.1\|1790155_1790641_+	endopeptidase	A0A2H5BM69	Streptomyces_phage	3.0e-16	38.5
WP_046953308.1\|1790968_1791859_+	5'-3'-deoxyribonucleotidase	A0A0D4DB39	Vibrio_phage	1.8e-43	58.1
WP_046953309.1\|1791862_1792594_+	NAD-dependent deacylase	R9TG77	Vibrio_phage	2.5e-27	37.1
WP_046953310.1\|1792624_1793626_-	cytochrome c	Q9JMN3	Wolbachia_phage	8.3e-21	40.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP031238

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection