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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP029613 Lactobacillus reuteri strain Byun-re-01 chromosome, complete genome 2 crisprs csa3,RT,cas14j,cas3,DEDDh,DinG,PrimPol 0 0 122 0

Results visualization

1. NZ_CP029613
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP029613_1 1598296-1598490 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP029613_2 2224076-2224161 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 1866 1 Lactobacillus_phage(100.0%) NA NA
DBSCAN-SWA_2 17855 : 23929 6 Enterococcus_phage(33.33%) NA NA
DBSCAN-SWA_3 28642 : 34827 5 Paenibacillus_phage(50.0%) transposase NA
DBSCAN-SWA_4 40209 : 41091 1 Hokovirus(100.0%) NA NA
DBSCAN-SWA_5 44885 : 46814 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_6 51891 : 53274 1 Pseudomonas_phage(100.0%) NA NA
DBSCAN-SWA_7 59425 : 64934 4 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_8 75510 : 78572 2 Cyanophage(50.0%) NA NA
DBSCAN-SWA_9 85818 : 86811 1 Enterobacteria_phage(100.0%) NA NA
DBSCAN-SWA_10 94804 : 95557 1 Lactobacillus_phage(100.0%) NA NA
DBSCAN-SWA_11 98787 : 101363 3 Paenibacillus_phage(66.67%) transposase NA
DBSCAN-SWA_12 105106 : 111101 6 Bacillus_phage(40.0%) NA NA
DBSCAN-SWA_13 120683 : 124534 4 Brevibacillus_phage(33.33%) NA NA
DBSCAN-SWA_14 127720 : 270873 124 Staphylococcus_virus(12.82%) transposase,tRNA NA
DBSCAN-SWA_15 275349 : 338310 57 Bacillus_phage(18.18%) protease,transposase NA
DBSCAN-SWA_16 345691 : 347353 1 Staphylococcus_virus(100.0%) transposase NA
DBSCAN-SWA_17 351248 : 355427 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_18 363559 : 364225 1 Alteromonas_phage(100.0%) NA NA
DBSCAN-SWA_19 369137 : 370004 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_20 374124 : 376593 2 Staphylococcus_virus(50.0%) NA NA
DBSCAN-SWA_21 397494 : 400981 3 Lactobacillus_phage(66.67%) NA NA
DBSCAN-SWA_22 427995 : 431779 3 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_23 437063 : 443024 6 Pseudomonas_phage(25.0%) NA NA
DBSCAN-SWA_24 447381 : 457364 10 Bacillus_phage(40.0%) NA NA
DBSCAN-SWA_25 464742 : 469877 3 Pseudomonas_phage(50.0%) NA NA
DBSCAN-SWA_26 475732 : 487400 11 Prochlorococcus_phage(28.57%) NA NA
DBSCAN-SWA_27 491026 : 492277 1 Cronobacter_phage(100.0%) tRNA NA
DBSCAN-SWA_28 498007 : 503313 5 unidentified_phage(25.0%) transposase NA
DBSCAN-SWA_29 506724 : 510498 3 Pseudomonas_phage(50.0%) NA NA
DBSCAN-SWA_30 517393 : 518347 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_31 522553 : 529720 5 Pseudomonas_phage(33.33%) NA NA
DBSCAN-SWA_32 534294 : 535065 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_33 539801 : 548799 8 Planktothrix_phage(33.33%) NA NA
DBSCAN-SWA_34 552669 : 554114 2 Anguillid_herpesvirus(50.0%) NA NA
DBSCAN-SWA_35 558711 : 562812 3 Bacillus_phage(50.0%) tRNA NA
DBSCAN-SWA_36 567500 : 581332 13 Anomala_cuprea_entomopoxvirus(16.67%) NA NA
DBSCAN-SWA_37 586721 : 589103 1 Hokovirus(100.0%) NA NA
DBSCAN-SWA_38 596962 : 598456 1 Diachasmimorpha_longicaudata_entomopoxvirus(100.0%) NA NA
DBSCAN-SWA_39 613846 : 621973 9 Pseudomonas_phage(50.0%) NA NA
DBSCAN-SWA_40 632426 : 640364 6 Chrysochromulina_ericina_virus(25.0%) protease,tRNA NA
DBSCAN-SWA_41 649135 : 650635 1 Acinetobacter_phage(100.0%) NA NA
DBSCAN-SWA_42 657454 : 659761 2 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_43 663080 : 684214 18 Pseudomonas_phage(12.5%) transposase,tRNA NA
DBSCAN-SWA_44 690952 : 692074 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_45 699511 : 713118 15 Streptococcus_phage(44.44%) NA NA
DBSCAN-SWA_46 718153 : 723759 6 Streptococcus_phage(50.0%) tRNA NA
DBSCAN-SWA_47 728249 : 736073 6 Staphylococcus_virus(25.0%) transposase NA
DBSCAN-SWA_48 742512 : 744541 2 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_49 753285 : 754200 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_50 757546 : 758479 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_51 761527 : 763252 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_52 766688 : 777073 7 Streptococcus_phage(40.0%) NA NA
DBSCAN-SWA_53 780837 : 850572 58 Bacillus_phage(11.76%) protease,transposase,tRNA NA
DBSCAN-SWA_54 866194 : 871115 5 Enterococcus_phage(25.0%) NA NA
DBSCAN-SWA_55 875846 : 877118 1 Enterobacteria_phage(100.0%) NA NA
DBSCAN-SWA_56 884511 : 885894 1 Pseudomonas_phage(100.0%) NA NA
DBSCAN-SWA_57 897125 : 898550 1 Aichi_virus(100.0%) NA NA
DBSCAN-SWA_58 903134 : 918840 16 Streptococcus_phage(25.0%) transposase NA
DBSCAN-SWA_59 927965 : 939630 7 Pacmanvirus(25.0%) tRNA NA
DBSCAN-SWA_60 946813 : 947464 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_61 954298 : 1032024 64 Bacillus_phage(16.67%) transposase,tRNA NA
DBSCAN-SWA_62 1036139 : 1038470 1 Mycobacterium_phage(100.0%) NA NA
DBSCAN-SWA_63 1052977 : 1055773 1 Orpheovirus(100.0%) tRNA NA
DBSCAN-SWA_64 1136901 : 1150668 10 Flavobacterium_phage(25.0%) protease,tRNA NA
DBSCAN-SWA_65 1155325 : 1162404 4 Megavirus(25.0%) NA NA
DBSCAN-SWA_66 1169594 : 1171832 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_67 1177049 : 1178982 2 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_68 1189510 : 1193965 5 Planktothrix_phage(33.33%) NA NA
DBSCAN-SWA_69 1198496 : 1199504 1 Pseudomonas_phage(100.0%) NA NA
DBSCAN-SWA_70 1205538 : 1208548 2 Helicobacter_phage(50.0%) NA NA
DBSCAN-SWA_71 1213189 : 1225998 11 Streptomyces_phage(25.0%) integrase attL 1207213:1207230|attR 1229718:1229735
DBSCAN-SWA_72 1230487 : 1252195 20 Bacillus_virus(27.27%) tRNA NA
DBSCAN-SWA_73 1264302 : 1267964 3 Staphylococcus_virus(50.0%) transposase NA
DBSCAN-SWA_74 1274226 : 1281481 8 Staphylococcus_virus(20.0%) integrase,transposase attL 1277536:1277549|attR 1280757:1280770
DBSCAN-SWA_75 1290702 : 1294778 5 Staphylococcus_phage(80.0%) NA NA
DBSCAN-SWA_76 1301467 : 1308860 7 Staphylococcus_phage(33.33%) NA NA
DBSCAN-SWA_77 1312071 : 1312785 1 Paenibacillus_phage(100.0%) NA NA
DBSCAN-SWA_78 1318339 : 1320103 1 Enterobacteria_phage(100.0%) NA NA
DBSCAN-SWA_79 1332712 : 1336977 3 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_80 1340269 : 1340884 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_81 1344683 : 1346873 4 Escherichia_phage(50.0%) NA NA
DBSCAN-SWA_82 1350557 : 1357146 7 Paramecium_bursaria_Chlorella_virus(25.0%) NA NA
DBSCAN-SWA_83 1364970 : 1371315 6 Ostreococcus_tauri_virus(33.33%) NA NA
DBSCAN-SWA_84 1381432 : 1382815 1 Pseudomonas_phage(100.0%) NA NA
DBSCAN-SWA_85 1385944 : 1439996 54 Lactobacillus_phage(28.57%) integrase,transposase attL 1381347:1381406|attR 1443614:1445524
DBSCAN-SWA_86 1443699 : 1445082 1 Pseudomonas_phage(100.0%) NA NA
DBSCAN-SWA_87 1459233 : 1459794 1 Salmonella_phage(100.0%) NA NA
DBSCAN-SWA_88 1463745 : 1542949 57 Streptococcus_phage(37.5%) transposase NA
DBSCAN-SWA_89 1554301 : 1555003 1 Indivirus(100.0%) NA NA
DBSCAN-SWA_90 1563591 : 1648346 116 Lactobacillus_phage(26.67%) plate,capsid,protease,tRNA,tail,transposase,integrase,portal,terminase attL 1604889:1604948|attR 1652822:1654478
DBSCAN-SWA_91 1651934 : 1710902 58 Pseudomonas_phage(13.33%) integrase,protease,transposase,tRNA attL 1642685:1642712|attR 1703364:1703391
DBSCAN-SWA_92 1718314 : 1784918 64 Lactobacillus_phage(21.05%) integrase,protease,transposase,tRNA attL 1767823:1767842|attR 1782138:1782157
DBSCAN-SWA_93 1788175 : 1795138 6 Lactobacillus_virus(33.33%) transposase NA
DBSCAN-SWA_94 1800270 : 1804200 2 Staphylococcus_phage(100.0%) tRNA NA
DBSCAN-SWA_95 1810570 : 1821832 9 Streptococcus_phage(20.0%) transposase NA
DBSCAN-SWA_96 1826114 : 1828993 2 Enterococcus_phage(100.0%) NA NA
DBSCAN-SWA_97 1843963 : 1852210 8 Pseudomonas_phage(33.33%) protease NA
DBSCAN-SWA_98 1866544 : 1868122 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_99 1871657 : 1947998 68 Lactobacillus_phage(15.0%) transposase NA
DBSCAN-SWA_100 1955648 : 1957649 2 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_101 1964241 : 1966718 2 Erysipelothrix_phage(50.0%) NA NA
DBSCAN-SWA_102 1971215 : 1978118 5 Ralstonia_phage(33.33%) NA NA
DBSCAN-SWA_103 1981663 : 1983330 2 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_104 1998032 : 2002011 2 Pseudomonas_phage(50.0%) NA NA
DBSCAN-SWA_105 2006398 : 2020859 7 Pseudomonas_phage(20.0%) protease NA
DBSCAN-SWA_106 2026757 : 2031503 6 Lactobacillus_phage(50.0%) integrase attL 2024629:2024649|attR 2030272:2030292
DBSCAN-SWA_107 2036015 : 2036216 1 Lactococcus_phage(100.0%) NA NA
DBSCAN-SWA_108 2040552 : 2041287 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_109 2072952 : 2074347 1 Lactobacillus_phage(100.0%) NA NA
DBSCAN-SWA_110 2078995 : 2083695 4 Catovirus(50.0%) transposase NA
DBSCAN-SWA_111 2089680 : 2091342 1 Staphylococcus_virus(100.0%) transposase NA
DBSCAN-SWA_112 2096128 : 2097511 1 Pseudomonas_phage(100.0%) NA NA
DBSCAN-SWA_113 2107909 : 2108824 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_114 2123416 : 2124172 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_115 2127861 : 2128587 1 Indivirus(100.0%) NA NA
DBSCAN-SWA_116 2179299 : 2180682 1 Pseudomonas_phage(100.0%) NA NA
DBSCAN-SWA_117 2187932 : 2191260 4 Paenibacillus_phage(66.67%) transposase NA
DBSCAN-SWA_118 2197824 : 2198550 1 Salmonella_phage(100.0%) NA NA
DBSCAN-SWA_119 2203731 : 2210349 4 Hokovirus(33.33%) NA NA
DBSCAN-SWA_120 2221009 : 2222023 1 Paramecium_bursaria_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_121 2228135 : 2228708 1 Pandoravirus(100.0%) NA NA
DBSCAN-SWA_122 2237417 : 2239315 2 Mycoplasma_phage(100.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage