CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP030097	Bacillus amyloliquefaciens strain SH-B74 chromosome, complete genome	2 crisprs	RT,DinG,casR,cas3,DEDDh,csa3	3	0	6	0
NZ_CP030098	Bacillus amyloliquefaciens strain SH-B74 plasmid pSH-B74, complete sequence	0 crisprs	NA	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP030097_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP030097_1

487072-488052

Orphan

Consensus_repeat	Method
CAACTGGGGTTACGGGAGATACCGGANCAACTGGGG	CRT

14 spacers

DinG

The CRISPR arrays of NZ_CP030097_1

>merge|NZ_CP030097|1|487072-488052|CRT
TAACAGGAATCACGGGAACTACGGGTCCAACCGGAGCCACTGGAGCGACGGGGTCAACTGGGCCGACGGGAATCACGGGTCCAACTGGAGCTACTGGAGCGACGGGTTCAACTGGGGTTACGGGGGATACCGGACCAACTGGGGTTACGGGAGATACCGGACCAACTGGGGCGACGGGAATCACGGGTCCAACCGGAGCTACTGGAGCGACGGGGTCAACCGGAGCCACTGGAGCGACGGGGTCAACCGGAGCCACTGGAGCGACGGGGTCAACTGGGGTTACGGGGGATACCGGACCAACTGGGGTTACGGGGGATACCGGACCAACTGGGGTTACGGGGGATACCGGACCAACTGGGGTTACGGGAGATACCGGACCAACTGGGGCGACGGGAATCACGGGTCCAACCGGAGCCACTGGAGCGACGGGGTCAACTGGGGTTACGGGAGATACCGGACCAACTGGGGTTACGGGGGATACCGGACCAACTGGGGTTACGGGAGATATCGGACCAACTGGGGCGACGGGAACTACGGGTCCAACCGGAGCCACTGGAGCGACGGGGTCAACTGGGGTTACGGGAGATACCGGATCAACTGGGGCGACGGGAATCACGGGTCCAACCGGAGCTACTGGAGCGACGGGGTCAACTGGGGTTACGGGAGATACCGGATCAACTGGGGCGACGGGAACTACGGGTCCAACCGGAGCCACTGGAGCGACGGGGTCAACTGGGGTTACGGGAGATACCGGACCAACTGGGCCGACGGGAATCACGGGTCCAACTGGAGCTACAGGAGATACCGGATCAACTGGGGCGACGGGAATCACGGGTCCAACCGGAGCCACTGGAGCGACGGGGTCAACTGGGGTTACGGGAGATACCGGATCAACTGGGGCGACGGGAATCACGGGTCCAACCGGAGCCACTGGAGCGACGGGGTCAACTGGGGTTACGGGAGATACCGGATCAACTGGGG

>NZ_CP030097|1|1|487072-488052|CRT
TAACAGGAATCACGGGAACTACGGGTCCAACCGGAG	CCACTGGAGCGACGGGGT
CAACTGGGCCGACGGGAATCACGGGTCCAACTGGAG	CTACTGGAGCGACGGGTT
CAACTGGGGTTACGGGGGATACCGGACCAACTGGGG	TTACGGGAGATACCGGACCAACTGGGGCGACGGGAATCACGGGTCCAACCGGAG
CTACTGGAGCGACGGGGTCAACCGGAGCCACTGGAG	CGACGGGGTCAACCGGAGCCACTGGAGCGACGGGGT
CAACTGGGGTTACGGGGGATACCGGACCAACTGGGG	TTACGGGGGATACCGGAC
CAACTGGGGTTACGGGGGATACCGGACCAACTGGGG	TTACGGGAGATACCGGAC
CAACTGGGGCGACGGGAATCACGGGTCCAACCGGAG	CCACTGGAGCGACGGGGT
CAACTGGGGTTACGGGAGATACCGGACCAACTGGGG	TTACGGGGGATACCGGAC
CAACTGGGGTTACGGGAGATATCGGACCAACTGGGG	CGACGGGAACTACGGGTCCAACCGGAGCCACTGGAGCGACGGGGT
CAACTGGGGTTACGGGAGATACCGGATCAACTGGGG	CGACGGGAATCACGGGTCCAACCGGAGCTACTGGAGCGACGGGGT
CAACTGGGGTTACGGGAGATACCGGATCAACTGGGG	CGACGGGAACTACGGGTCCAACCGGAGCCACTGGAGCGACGGGGT
CAACTGGGGTTACGGGAGATACCGGACCAACTGGGC	CGACGGGAATCACGGGTC
CAACTGGAGCTACAGGAGATACCGGATCAACTGGGG	CGACGGGAATCACGGGTCCAACCGGAGCCACTGGAGCGACGGGGT
CAACTGGGGTTACGGGAGATACCGGATCAACTGGGG	CGACGGGAATCACGGGTCCAACCGGAGCCACTGGAGCGACGGGGT
CAACTGGGGTTACGGGAGATACCGGATCAACTGGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP030097.1\|WP_007408963.1\|480680_481700_-\|NADP-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|176190
NZ_CP030097.1\|WP_162782342.1\|489977_492770_+\|collagen-like-repeat-preface-domain-containing-protein	unknown	unknown	gnl\|CDD\|274746
NZ_CP030097.1\|WP_113629794.1\|488636_489797_+\|NTTRR-F1-domain	unknown	unknown	gnl\|CDD\|189968
NZ_CP030097.1\|WP_003155658.1\|475535_475958_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133401
NZ_CP030097.1\|WP_007408961.1\|478977_480108_+\|DEAD/DEAH-box-helicase	DinG	COG1199_DinG_CAS-IV-A	gnl\|CDD\|223587
NZ_CP030097.1\|WP_007408966.1\|484269_485706_+\|anion-permease	unknown	unknown	gnl\|CDD\|279307
NZ_CP030097.1\|WP_015239384.1\|499756_500029_-\|acylphosphatase	unknown	unknown	gnl\|CDD\|237710
NZ_CP030097.1\|WP_007610021.1\|494555_495236_+\|response-regulator	unknown	unknown	gnl\|CDD\|226931
NZ_CP030097.1\|WP_007408959.1\|476021_477206_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341027
NZ_CP030097.1\|WP_032867808.1\|495248_496211_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|225722
NZ_CP030097.1\|WP_003155650.1\|482368_482716_+\|general-stress-protein	unknown	unknown	gnl\|CDD\|378584
NZ_CP030097.1\|WP_032867810.1\|492954_494559_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225827
NZ_CP030097.1\|WP_050498191.1\|481827_482178_-\|DUF3212-family-protein	unknown	unknown	gnl\|CDD\|288356
NZ_CP030097.1\|WP_007408486.1\|497753_498548_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293807
NZ_CP030097.1\|WP_061046501.1\|482879_484145_+\|pectate-lyase	unknown	unknown	gnl\|CDD\|226384
NZ_CP030097.1\|WP_007408962.1\|480179_480626_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|224168
NZ_CP030097.1\|WP_015239385.1\|500096_500756_+\|MOSC-domain-containing-protein	unknown	unknown	gnl\|CDD\|225167
NZ_CP030097.1\|WP_007408960.1\|477249_478806_-\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223562
NZ_CP030097.1\|WP_061046502.1\|498671_499763_+\|nitric-oxide-synthase-oxygenase	unknown	unknown	gnl\|CDD\|376957
NZ_CP030097.1\|WP_007408485.1\|496403_497702_+\|citrate-transporter	unknown	unknown	gnl\|CDD\|162036

Protein	Function_ID	Function_description	E-value
NZ_CP030097.1\|WP_007408963.1\|480680_481700_-\|NADP-dependent-oxidoreductase	gnl\|CDD\|176190	cd05288, PGDH, Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.	0
NZ_CP030097.1\|WP_162782342.1\|489977_492770_+\|collagen-like-repeat-preface-domain-containing-protein	gnl\|CDD\|274746	TIGR03721, exospore_TM, BclB C-terminal domain. This domain occurs as the C-terminal region in a number of proteins that have extensive collagen-like triple helix repeat regions. Member domains are predicted by TmHMM to have four or five transmembrane helices. Members are found mostly in the Firmicutes, but also in Acanthamoeba polyphaga mimivirus. Members include spore surface glycoprotein BclB from Bacillus anthracis, a protein of the exosporium. The exosporium is an additional outermost spore layer, lacking in B. subtilis and most other spore formers, consisting of a basal layer and, above it, a nap of fine filaments.	2.52225e-27
NZ_CP030097.1\|WP_113629794.1\|488636_489797_+\|NTTRR-F1-domain	gnl\|CDD\|189968	pfam01391, Collagen, Collagen triple helix repeat (20 copies). Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.	8.11078e-09
NZ_CP030097.1\|WP_003155658.1\|475535_475958_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133401	cd04774, HTH_YfmP, Helix-Turn-Helix DNA binding domain of the YfmP transcription regulator. Helix-turn-helix (HTH) transcription regulator, YfmP, and related proteins; N-terminal domain. YfmP regulates the multidrug efflux protein, YfmO, and indirectly regulates the expression of the Bacillus subtilis copZA operon encoding a metallochaperone, CopZ, and a CPx-type ATPase efflux protein, CopA. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.	1.84296e-35
NZ_CP030097.1\|WP_007408961.1\|478977_480108_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	4.52076e-108
NZ_CP030097.1\|WP_007408966.1\|484269_485706_+\|anion-permease	gnl\|CDD\|279307	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region. There are also some members in this family that do not match the Prosite motif, and belong to the subfamily SODIT1.	0
NZ_CP030097.1\|WP_015239384.1\|499756_500029_-\|acylphosphatase	gnl\|CDD\|237710	PRK14420, PRK14420, acylphosphatase; Provisional.	1.85537e-53
NZ_CP030097.1\|WP_007610021.1\|494555_495236_+\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	7.42185e-91
NZ_CP030097.1\|WP_007408959.1\|476021_477206_+\|MFS-transporter	gnl\|CDD\|341027	cd17474, MFS_YfmO_like, Bacillus subtilis multidrug efflux protein YfmO and similar transporters of the Major Facilitator Superfamily. This family is composed of Bacillus subtilis multidrug efflux protein YfmO, bacillibactin exporter YmfD/YmfE, uncharacterized MFS-type transporter YvmA, and similar proteins. YfmO acts to efflux copper or a copper complex, and could contribute to copper resistance. YmfD/YmfE is involved in secretion of bacillibactin. The YfmO-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.82425e-93
NZ_CP030097.1\|WP_032867808.1\|495248_496211_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl\|CDD\|225722	COG3181, COG3181, Uncharacterized protein conserved in bacteria [Function unknown].	1.16966e-82
NZ_CP030097.1\|WP_003155650.1\|482368_482716_+\|general-stress-protein	gnl\|CDD\|378584	pfam11181, YflT, Heat induced stress protein YflT. YflT is a heat induced protein.	1.36131e-33
NZ_CP030097.1\|WP_032867810.1\|492954_494559_+\|sensor-histidine-kinase	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	2.81102e-156
NZ_CP030097.1\|WP_050498191.1\|481827_482178_-\|DUF3212-family-protein	gnl\|CDD\|288356	pfam11486, DUF3212, Protein of unknown function (DUF3212). Members in this family of proteins are annotated as YfmB however currently no function for this protein is known.	1.7601e-47
NZ_CP030097.1\|WP_007408486.1\|497753_498548_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293807	cd07721, yflN-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis yflN; MBL-fold metallo hydrolase domain. This subgroup includes the uncharacterized Bacillus subtilis yflN protein. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	3.1625e-77
NZ_CP030097.1\|WP_061046501.1\|482879_484145_+\|pectate-lyase	gnl\|CDD\|226384	COG3866, PelB, Pectate lyase [Carbohydrate transport and metabolism].	3.71504e-91
NZ_CP030097.1\|WP_007408962.1\|480179_480626_+\|N-acetyltransferase	gnl\|CDD\|224168	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane].	6.52378e-26
NZ_CP030097.1\|WP_015239385.1\|500096_500756_+\|MOSC-domain-containing-protein	gnl\|CDD\|225167	COG2258, COG2258, Uncharacterized protein conserved in bacteria [Function unknown].	6.78912e-82
NZ_CP030097.1\|WP_007408960.1\|477249_478806_-\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	0
NZ_CP030097.1\|WP_061046502.1\|498671_499763_+\|nitric-oxide-synthase-oxygenase	gnl\|CDD\|376957	pfam02898, NO_synthase, Nitric oxide synthase, oxygenase domain.	0
NZ_CP030097.1\|WP_007408485.1\|496403_497702_+\|citrate-transporter	gnl\|CDD\|162036	TIGR00784, Mg2+/citrate_complex_secondary_transporter, citrate transporter, CitMHS family. This family includes two characterized citrate/proton symporters from Bacillus subtilis. CitM transports citrate complexed to Mg2+, while the CitH apparently transports citrate without Mg2+. The family also includes uncharacterized transporters, including a third paralog in Bacillus subtilis. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	0

>NZ_CP030097.1|WP_007408966.1|484269_485706_+|anion-permease
MASEKDAKKQQAVKIIPLLITVAVGLIIWFIPAPSGLEPKAWHLFAIFVATIIGFISKPLPMGAIAIFALAVTALTGTLSIENTLSGFGNKTIWLIVIAFFISRGFIKTGLGARISYVFVQRFGKKTLGLSYSLLFSDLILSPAIPSNTARAGGIIFPIIRSLSETFGSTPADGTERKIGAFLLKTGFQGNLITSAMFLTAMAANPLIAKLAHDVAGVDITWTSWAIAAIVPGLASLIITPLVIYKLYPPEIKETPDAAKIATEKLKEMGPFKKSELSMVIVFLLVLALWIFGGSLNIDATTTALIGLSVLLLSQVLTWEDIKKEQGAWDTLTWFAALVMLANFLNELGMVSWFSNMMKSSVSGFSWIVAFMILIVVYYYTHYFFASATAHISAMYAAFLAVIVAAGAPPLLAALSLAFFSNLFGSTTHYGSGAAPVFFGAGYISQSKWWSIGFILSIVHIVTWLVIGGLWWKVLGLW
>NZ_CP030097.1|WP_061046501.1|482879_484145_+|pectate-lyase
MKKMLFMLAVCLCMIPADVYAADLGRQTLGTNDGWGAASGGTTGGAKASSSNVYTVSNRQQLVSALGGSANSTPKIIYIQGTINMNTDDRNKTLGFDDYKDPAYDPNAYLKAYDPDKWGKKAPSGTQEDARQRSQKNQKARVVVDIPSNTTIIGSGSNAKVTGGNFNIKNGVDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSEYDNITINGATHIWIDHCTFNDGSNPDSSFPYYYGRKYQHHDGQTDIANGANYITLSYNKYHDHDKGSVIGNSDSKTSDEGKLKVTIHHNYYQNIVQRAPRVRYGQVHIYNNFYAGSKSAAYPFSYAWGAGHASKIYAQNNVFEVPGLAADKVISVFSGGKALHEDGTLLNGASINASAANGLSQSVGWTPSLHGSIGSSSNVKSDVISKAGSGILK
>NZ_CP030097.1|WP_003155650.1|482368_482716_+|general-stress-protein
MKPVVREYTNDQKLMQDVKELQQLGVAKEDVYVLSHDDDRTDRLADNTDVNTIGAKETGIKHAVGNMFNKKGDELRNKIHEIGFSEEEASQFEKRLDEGKVLLFVTDNEKVKSWA
>NZ_CP030097.1|WP_050498191.1|481827_482178_-|DUF3212-family-protein
MVPIHYFSPEQRFNAWVVSDLVKQVFRRHTRCPDGIKELTAFAEDTFHINIDFVFSIIINIGDIESVLPTEIENRLSSYLTALQPVITADMLHSSKTNAYEYLEHEKNTDVYRLFY
>NZ_CP030097.1|WP_007408963.1|480680_481700_-|NADP-dependent-oxidoreductase
MPNHQQQIQLARRPKGVPAHDDFRFETIAVPEPKDGEVLVKTSYVSVDPYMRGRMQDTKSYVEPFALDEAITGGVIAEVLTDGDKLKKGDVVIGNLAWQEYSAVNESALRKLDTDIAPAQAYLGILGMTGLTAYFGLLDIGRPKKGETVVVSGAAGAVGSTVGQIAKIKGARVVGIAGSDEKIAYLKEELQFDEAINYKTADDIQKALEQACPDGVDVYFDNVGGPISDAVINLLNEFARIPVCGAISSYNTESEEEDMGPRVQPKLIKTKALMQGFIVSDYADRFSEGAKQLAEWLKDGKLHYEETITEGFSHIPDAFLGLFKGENKGKQIIKVSDLS
>NZ_CP030097.1|WP_007408962.1|480179_480626_+|N-acetyltransferase
MVSIDRFQILKERELKILEHWFKNDNIRRRMDAMLPLDAWYARLNKDEDDTVIMAYDGECPAGMVSMEFVEERAYIGLIVNPLYQLQGYGKQMLQKLLTDPGFTSVREWAANIEKDNQISLACFQAAGFTLEDTEPDEDGFLTLILRG
>NZ_CP030097.1|WP_007408961.1|478977_480108_+|DEAD/DEAH-box-helicase
MTQTWPFLQHTQPFIAENWEASGFQEPTVIQEKAAQVIMEGKDVIAESPTGTGKTLAYTLPVLERINPEQKHPQVIILAPSRELVMQIFQVIQEWIKGSDLRALSLIGGANVKKQVEKLKNKPHIIAGTPGRVLELIQAKKLKMHEVKTIVLDEADQLVTQEHRETMKKIIKTTLKDRQLLSFSATLQPETEQVLNTIAHEPAVLKVERNTAEKARVTHQYLVCDQRDKVKLLQKLSRLNGMQALVFVRDIGNLSVYAEKLAYHHVDLGILHGEAKKMERAKILSAFERGEFPLLLATDIAARGLDIDDLPYVIHADIPNEDGYIHRSGRTGRAGKEGTVLSLVTPMEESKLKKMAKSLGIALKEAVYSGGKLSEK
>NZ_CP030097.1|WP_007408960.1|477249_478806_-|ABC-F-family-ATP-binding-cassette-domain-containing-protein
MSILSVKELSHGFGDRALFNNVSFRLLKGEHVGLIGANGEGKSTFMNIITGKLEPDEGKVEWAKNVRVGYLDQHTVLEKGKTIRDVLKDAFHYLFAMEEEMNEIYNKMGEADPDELEQLLEDVGVIQDALTNNDFYVIDSKVEEIARGLGLQDVGLDRDVTDLSGGQRTKVLLAKLLLEKPEILLLDEPTNYLDEQHIEWLKRYLQEYENAFILISHDIPFLNSVINLIYHVENQELTRYVGDYHQFMEVYEVKKQQLEAAYKKQQQEVAELKDFVARNKARVSTRNMAMSRQKKLDKMDMIELAAEKPKPEFHFKPARTSGKLIFETKDLVIGYDTPLSRPLNLRMERGQKVALYGANGIGKTTLLKSLLGEIQPLEGTVERGEHQYTGYFEQEVKETNNNTCIEEVWSEFPSFTQYEIRAALAKCGLTTKHIESRVSVLSGGEKAKVRLCKLINSETNLLVLDEPTNHLDVDAKEELKRALKEYKGSILLISHEPEFYMDIATETWNCESWTTKVL
>NZ_CP030097.1|WP_007408959.1|476021_477206_+|MFS-transporter
MDTSSQQKTGLFSQPKAVWAVAFACVISFMGIGLVDPILPAIAAQLHASPSEVSLLFTSYLLVTGFMMFFSGAISSRIGAKWTLLLGLIFIIVFAALGGSSSSIAQLVGYRGGWGLGNALFISTALAVIVGVSVGGSAKAIILYEAALGLGISVGPLAGGELGSISWRAPFFGVSVLMFIALCAISLMLPKLPKPAKRVGVFDAMKALKYKGLLTMAVSAFLYNFGFFILLAYSPFVLDLDEHGLGYVFFGWGLLLAITSVFTAPLVHKALGTVGSLVVLFIAFAVILIVMGIWTDHQTLIITCIVVAGAVLGMVNTIMTTAVMGSAPVERSIASSAYSSVRFIGGALAPWIAGMLSEHFTASTPYTVGGIVVFVGMLVLLMGRKHLAGIKAGH
>NZ_CP030097.1|WP_003155658.1|475535_475958_+|MerR-family-transcriptional-regulator
MEWMKIDQVAKRSGLTKRTIRFYEEIGLIPAPKRTEGGVRLYSEDDMEELEKVTSTKEVLGFSLQELQQFMEMSRQLELNKEGYLLSLDPKERKEKLEEIQHALNHQLEMIDEKISTFQHFKTRLNGMKEKADRAIQSIE
>NZ_CP030097.1|WP_113629794.1|488636_489797_+|NTTRR-F1-domain
MAIGNLIVNGGFESGDLTGWDVANATVNSIFAHSGTYSAQFLIETNTASLSQIVPVTVGQAYHFQVSLGTIGTASNPQVNLQILYLNSLGVPIATGLDAAITIGHLPNVIFNTWTEVYQTTSVVPDGTTDAQIMINKASVNTNTTILIDDVSLLQVIENSGPTGSTGSTGPTGRTGTTGVTGSTGATGVTGSTGATGATGVTGTTGPTGATGITGPTGRTGTTGVTGSTGATGVTGTTGPTGATGITGPTASAPTLLFTRTNGPLTVYPPLNTEVPVAELEIPVNTLQNVKFDYSVSVDVTSTANSNFVFEIRLYRGAVQIHTRLLSRSIISATTQRFAVADTTVDTAPTAGTNTYQLRVIFTTANNITTATALNIDFNSIRFPTT
>NZ_CP030097.1|WP_162782342.1|489977_492770_+|collagen-like-repeat-preface-domain-containing-protein
MRKGDTWYNRYDSWDCDCRHCNECCCHSQHKRRNQRRSYHNRAHCCEGCCCENSCCHERWCPCCHPNHFHVRGATGATGFTGATGLTGATGLTGATGFTGATGFTGATGLTGATGFTGATGVTGDPGATGATGATGVTGATGVTGATGITGATGVTGATGVTGATGVTGATGVTGSNGITGITGATGVTGAAGVTGATGITGATGVTGATGVTGVTGATGITGVTGDTGATGITGVTGDTGATGVTGVTGVTGATGITGVTGDTGATGVTGATGDTGSTGITGATGITGATGVTGATGITGATGATGATGATGVTGATGITGATGVTGATGDIGSTGITGATGITGATGVTGATGITGATGVTGATGVTGATGITGATGITGATGVTGATGITGVTGATGATGATGVIGATGITGVTGDTGATGVTGATGDTGSTGITGATGVTGATGVTGATGVTGDTGATGITGTTGVTGATGITGATGVTGATGVTGITGAIGVTGATGVTGDTGATGITGATGATGATGATGVTGSTGEIGATGVTGATGVTGVTGATGITGATGVTGATGVTGATGITGSTGATGITGSTGVTGITGSTGVTGITGSTGVTGITGSTGVTGITGATGITGATGITGATGITGSTGDTGATGVTGATGVTGSTGATGITGATGITGATGATGITGATGVTGVTGVTGSTGVTGATGVTGSTGATGDTGSTGITGATGVTGATGATGVTGTTGITGATGVTGVTGATGVTGATGAGAIIPFASGLPTAVTTIAGGLIGTVSLVGFGNSVTGVSVGGGGAIDLTGAGGTLLNFAFSVPRSGTITSIAAYFSTTAALSLVGSTVTITAQLYSSTVPNNTFTPIPGASVTLAPPLTGVLSIGSISNGITTGLNIAVTPQTRLLMVFSATATGLSLINTVAGYASAGVTIS
>NZ_CP030097.1|WP_032867810.1|492954_494559_+|sensor-histidine-kinase
MLEAKRFYVSLQMKIAGLITALLILVIGTLTVIFAFQQLKEGQKQAEQLAVQTAKTISYMPPVKEAFRLADQEAFTKLDVIEQMKEQAGAHAVYITDQKGHVAFHSARSSIPKENQNLQNKTIMFGGSPVSDGMKAVRGSAPVILEEKNHNEVVGTVTVEFLQDEIEKDMKAHLRHLGYFACLVFLIGIGGAAALAKSIRKDTLGLEPHEIAALYRERNAMLLAIKEGIIAVNKEGAVTMMNLSAADMLNLPEPMIGRHIKEIMPGANLMPVLAGGELPPNVEVRAGNKVFILNVKEMKQTGQVYGAVISFREKTELKKLINKLTEMKKYSEDLRAQTHEFSNKLYAILGLLELGEYNEAIELIKEEYAIQNEQHEILFQNIHSQRVQAILLGKMGKASEKKVKLSIDENSFLESLPEHVGSSQLITIIGNLIDNAFEAVAEKEKKEVAFFMTDIGRDIVIEVADSGDGVPQEKTKTIFEKGYSSKGTRRGYGLANLKEAVSELQGSIEISQQKSGGAVFTVFIPKETPKGESV
>NZ_CP030097.1|WP_007610021.1|494555_495236_+|response-regulator
MINIAIAEDDFRIAQIHEKFIEHLDGFNVIGKAINAKDTISLLEKRQPDLLLLDIYMPDELGTDLLPLIRGRFPSVDIIIITASAETRLLQEALRSGVSHYVIKPVSAHKFTEVLLQYREKREWLHSQPELSQSVIDMFFGSGQKEQKQLNDLPTGINSITLQKIKNALRAAQKGMTAEELGEKMGASRTTARRYAEFLVSREEALAELEYGIIGRPERKYYLAHE
>NZ_CP030097.1|WP_032867808.1|495248_496211_+|tripartite-tricarboxylate-transporter-substrate-binding-protein
MKRLGVLLVMLAALVSFDGRQMAGIRSAEGPVEIVVPAAPQGGWDVTAKALQSVIERKQILGRSVKIVYKPGGGGDSGWKYVNERKTDVISMNSSLLLSNEILGQSRLKAADFTPLAIIAKEWQTVALPKDSKIKSGKRLLGDIKAHPGGIKIGFAPGLGNDDQLSFARAAEMAGISPFDIRFFQYGSSNEVIEALISHEIDAASMTISEARDAYRKGKITLAAVTSDKRLSGFSDVPTWKEQGVPFVFAHWRGIMGPKDMTEGEIAYWDQALKQITSSAEWKQMLKKRDWESFYKNSSGAKRFLEEQTEFYKEMMSSEK
>NZ_CP030097.1|WP_007408485.1|496403_497702_+|citrate-transporter
MLAILGFLMMLVFMVLIMTKRLSVLTALVLTPIVFALFAGFSFNRVGEMMISGIEQVAPIAVMIMFAILYFGIMIDTGLFDPMVSRILKLVKGDPLKIVVGTAVLTMLVALDGDGSTTYMITTSAMLPLYIMLGIRPIILAGIAGVGMGIMNTIPWGGATPRAASALGVDPAELTGPMLPVIASGMVCMIVVAYVLGRMERKRLGVIELKQPSHTNETAAAAEDEWRRPKLWWFNLLLTLSLVGFLVSGKVNLTVLFIIAFCIALIVNYPKLNDQRERISAHSSNVLAIGSMIFAAGVFTGILTGTKMVDEMAISLVSLIPEQMGGFIPAIVALTSGIFTFLMPNDAYFYGVLPILSETAVAYGVDKVEIARASIIGQPIHMLSPLVPSTHLLVGLAGVTIDEHQKFAMKWAVLAVIVMTAFALIIGAITIF
>NZ_CP030097.1|WP_007408486.1|497753_498548_+|MBL-fold-metallo-hydrolase
MSDPFMPLFSVRSGAGFKAADGVYGLTVQIANVYFIENPSAPREIILVDAGMPQSAEMITEEMKRRFKEGYQLKAVILTHGHFDHVGAIEELLELWDVPVYIHEKELPYVTGKADYPPARPDAKKGLVAKLSPLFPRHTIRIPSVQALPSDGTVPFLEEWKWVHTPGHTPGHISLFRDKDRVLLAGDAVITVEQESLADVVIQKQELHGPPAYFTADTQTAAASVQKLAELEPEALLTGHGIPMTGKNYREDLLTLAEKLHSVL
>NZ_CP030097.1|WP_061046502.1|498671_499763_+|nitric-oxide-synthase-oxygenase
MKHTEILWDEAKDFIDVCYQELGMESQINARLHAIKDEIDRTGSYVHTAEELEHGAKMAWRNSNRCIGRLFWQSLNVIDRRGVKTKEEVRDALFEHIEIATNGGKIKPTITIFPPEKNGEKQVEIWNHQLIRYAGYETEKGRVGDPASYELTAVCEKLGWRGKRTDFDILPLLFRMKGDGQPVWYDLPQTLVKEVPITHPDIEEFADLNLRWYGVPIIADMRLEIGGLSYNAAPFNGWYMGTEIGARNLADEKRYDMLKKAAAVMGISASLNTDLWKDQVLVELNKAVLYSYKKHGVSIVDHHTAANQFKRFEEQEQDAGRKLTGDWTWLIPPISPASTHIFHKSYDDTIVKPNYYYQDKPYQ
>NZ_CP030097.1|WP_015239384.1|499756_500029_-|acylphosphatase
MLQYHMIADGRVQGVGFRYFVQMEADRHKVAGWVKNRDDGRVEILAEGPEESLKQFAEAVRKGSPFSNVTGVTIEESHRLKGYRTFTISY
>NZ_CP030097.1|WP_015239385.1|500096_500756_+|MOSC-domain-containing-protein
MTQDYSVLSINLGKPAIHEFAGRQINSGIIKRPADSPVMLYKTHFDGDGQADLKHHGGPDKAVCVYPAEHYSYWETTLARKLPAAAFGENVTVKGLAEQDVWIGDVFQLGEAVVQVSQPRQPCVKLALKYGIKDMVLRVQQTGFTGFYFRVLEEGYVDPRPVLKRLSRGKESISVWYANEVKYRDSGNLSAIEEILREEALSESWRESFLKKRDRLTNV

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Crispr_ID: NZ_CP030097_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP030097_2

3923874-3923962

Orphan

Consensus_repeat	Method
TGTGCATATATTTGTACTATACAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP030097_2

>merge|NZ_CP030097|2|3923874-3923962|CRISPRCasFinder
TGTGCATATATTTGTACTATACAAATATATGTATGCAAAATCTTTCTATATGTTTTCTGAGTAAATGTGCATATATTTGTATTATACAA

>NZ_CP030097|2|1|3923874-3923962|CRISPRCasFinder
TGTGCATATATTTGTACTATACAA	ATATATGTATGCAAAATCTTTCTATATGTTTTCTGAGTAAA
TGTGCATATATTTGTATTATACAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP030097.1\|WP_061047149.1\|3930093_3931302_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378925
NZ_CP030097.1\|WP_061047146.1\|3919546_3920428_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP030097.1\|WP_033575109.1\|3931304_3932471_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378925
NZ_CP030097.1\|WP_061047145.1\|3918790_3919444_+\|ABC-2-transporter-permease	unknown	unknown	gnl\|CDD\|379133
NZ_CP030097.1\|WP_015416701.1\|3920562_3921729_+\|DUF4885-family-protein	unknown	unknown	gnl\|CDD\|292843
NZ_CP030097.1\|WP_079891478.1\|3921781_3922627_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381358
NZ_CP030097.1\|WP_061047150.1\|3932772_3933468_+\|thioesterase	unknown	unknown	gnl\|CDD\|225749
NZ_CP030097.1\|WP_007408012.1\|3912263_3913703_+\|YbbR-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|227193
NZ_CP030097.1\|WP_003156751.1\|3923399_3923804_-\|CidA/LrgA-family-holin-like-protein	unknown	unknown	gnl\|CDD\|167253
NZ_CP030097.1\|WP_061047147.1\|3926333_3927038_+\|noncanonical-pyrimidine-nucleotidase,-YjjG-family	unknown	unknown	gnl\|CDD\|162788
NZ_CP030097.1\|WP_061047148.1\|3929145_3930078_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP030097.1\|WP_003156747.1\|3924855_3926241_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|182694
NZ_CP030097.1\|WP_033575107.1\|3928274_3928928_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP030097.1\|WP_007408011.1\|3913720_3915067_+\|phosphoglucosamine-mutase	unknown	unknown	gnl\|CDD\|237670
NZ_CP030097.1\|WP_020955242.1\|3917940_3918813_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP030097.1\|WP_007408979.1\|3923999_3924431_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP030097.1\|WP_061047144.1\|3915498_3917301_+\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	unknown	unknown	gnl\|CDD\|234729
NZ_CP030097.1\|WP_007408978.1\|3922737_3923430_-\|LrgB-family-protein	unknown	unknown	gnl\|CDD\|377236
NZ_CP030097.1\|WP_024084829.1\|3932520_3932700_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP030097.1\|WP_033575106.1\|3927093_3928251_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951

Protein	Function_ID	Function_description	E-value
NZ_CP030097.1\|WP_061047149.1\|3930093_3931302_+\|ABC-transporter-permease	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	1.08001e-22
NZ_CP030097.1\|WP_033575109.1\|3931304_3932471_+\|ABC-transporter-permease	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	1.29828e-22
NZ_CP030097.1\|WP_061047145.1\|3918790_3919444_+\|ABC-2-transporter-permease	gnl\|CDD\|379133	pfam13346, ABC2_membrane_5, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	1.24857e-17
NZ_CP030097.1\|WP_015416701.1\|3920562_3921729_+\|DUF4885-family-protein	gnl\|CDD\|292843	pfam16226, DUF4885, Domain of unknown function (DUF4885). This family consists of several uncharacterized proteins around 390 residues in length and is mainly found in various Bacillus subtillis species. This family is predicted to be functional in biosynthesis of rhizocticins and antifungal phosphonate oligopeptides, but the specific function of this family is still unknown.	6.12713e-155
NZ_CP030097.1\|WP_079891478.1\|3921781_3922627_-\|aldo/keto-reductase	gnl\|CDD\|381358	cd19132, AKR_AKR5D1_E1, AKR5D and AKR5E families of aldo-keto reductase (AKR). 2,5-diketo-D-gluconic acid reductase B (DkgB) from Corynebacterium sp. and 2,5-diketo-D-gluconic acid reductase Zymomonas mobilis are founding members of aldo-keto reductase family 5 member D1 (AKR5D1) and E1 (AKR5E1), respectively. DkgB (EC 1.1.1.274), also called 2,5-didehydrogluconate reductase (2-dehydro-D-gluconate-forming), or 2,5-DKG reductase B, or 2,5-DKGR B, or 25DKGR-B, catalyzes the reduction of 2,5-diketo-D-gluconic acid (25DKG) to 2-keto-L-gulonic acid (2KLG).	1.53605e-174
NZ_CP030097.1\|WP_061047150.1\|3932772_3933468_+\|thioesterase	gnl\|CDD\|225749	COG3208, GrsT, Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism].	8.23835e-55
NZ_CP030097.1\|WP_007408012.1\|3912263_3913703_+\|YbbR-like-domain-containing-protein	gnl\|CDD\|227193	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown].	5.87236e-132
NZ_CP030097.1\|WP_003156751.1\|3923399_3923804_-\|CidA/LrgA-family-holin-like-protein	gnl\|CDD\|167253	PRK01658, PRK01658, CidA/LrgA family holin-like protein.	1.26797e-35
NZ_CP030097.1\|WP_061047147.1\|3926333_3927038_+\|noncanonical-pyrimidine-nucleotidase,-YjjG-family	gnl\|CDD\|162788	TIGR02254, hydrolase_haloacid_dehalogenase-like_family, noncanonical pyrimidine nucleotidase, YjjG family. This HAD superfamily includes including YjjG from E. coli and YfnB from B. subtilis. YjjG has been shown to act as a house-cleaning enzyme, cleaving nucleotides with non-canonical nucleotide bases. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).	3.31552e-95
NZ_CP030097.1\|WP_007408979.1\|3923999_3924431_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.72625e-15
NZ_CP030097.1\|WP_061047148.1\|3929145_3930078_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	1.19626e-105
NZ_CP030097.1\|WP_033575107.1\|3928274_3928928_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	3.8998e-73
NZ_CP030097.1\|WP_007408011.1\|3913720_3915067_+\|phosphoglucosamine-mutase	gnl\|CDD\|237670	PRK14316, glmM, phosphoglucosamine mutase; Provisional.	0
NZ_CP030097.1\|WP_020955242.1\|3917940_3918813_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	4.78664e-69
NZ_CP030097.1\|WP_061047144.1\|3915498_3917301_+\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
NZ_CP030097.1\|WP_003156747.1\|3924855_3926241_+\|amino-acid-permease	gnl\|CDD\|182694	PRK10746, PRK10746, putative transport protein YifK; Provisional.	0
NZ_CP030097.1\|WP_007408978.1\|3922737_3923430_-\|LrgB-family-protein	gnl\|CDD\|377236	pfam04172, LrgB, LrgB-like family. The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control of murein hydrolase activity and penicillin tolerance.	4.88126e-81
NZ_CP030097.1\|WP_033575106.1\|3927093_3928251_+\|sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	1.25087e-45

>NZ_CP030097.1|WP_003156751.1|3923399_3923804_-|CidA/LrgA-family-holin-like-protein
MKVIRIILQIIILFAFSFIGGAVQQFFHLPIPGSIIGLILLIICLSVKIIPVKMIEDGAGFLLSFLPLLFIPAMTGVINYPSLFSASGAALFLIIVLSTIVTMIAAGYASQLLEHKANQRKEKKKCSKHVSQSL
>NZ_CP030097.1|WP_007408978.1|3922737_3923430_-|LrgB-family-protein
MQQACIAILIILFTAAAYLAMVKLYVRFPYPFLIPVLTTTIFIIAVLLVFHISYKDYMIGGQWINSLLGPAVVALAYPLYKQRRVLIKYMFPIIGGVLAGLFSGMVSGLLFAELFGISRSLILSIIPKSITTPVAIQIASGIGGVPSMTVVFVMIAGFSGVILGPLLLKWIRIRSSLGKGIAFGSASHALGTSKAMEYGELTVSMSSVSMTLCAVLGSVFGPVVAWMFQI
>NZ_CP030097.1|WP_079891478.1|3921781_3922627_-|aldo/keto-reductase
MMTGAIPQKKLLDGTSIPAIGFGTYALNGNNGVHAITSAIDIGYRLIDTAYNYENEGSVGEAIKRSSVPREQLYVTSKLPGRYHDYDKAVQTIQESLYRAGLDYYDLYLVHWPNPKQDRYTEAWQALIDAKKWGLIRSIGVCNFLPEHIERLERETGVKPGINQIELHPAFNQQQQRQWHEEQGIVTESWSPLSRAGEVLNDQKLGRIADKYGKTISQVILRWHIQLGAIPIPKSASPERQLENISVFDFSLDENDMSIIDSLTRPDGRINGQDPAEYEEF
>NZ_CP030097.1|WP_015416701.1|3920562_3921729_+|DUF4885-family-protein
MRLNARYIKNQVMAQQVLQRYSSKTNVKDAAKGSDSLLIQTGGSRDLSQVNYSRSGVTEKGSSLSRLYQSANQKTITDNGNETVIDANNPYESESDIASKILDEKYSRINEINKRKPDPLHYIKDKYQRADSPYFRSDLSESERQAAYHNETEWLFKGKAQSYDFRDAAFRGETLNGEIQVENEKVFQRGQVNQQIEMLFHRNHIQIPEGANLTFTISPIDYLLKVSGTDDKELTQQIEAVLNSGENSKELFAHIIRSRSDDSSQFTPETYEKYQVVREMYEVTGYHLKDLQIVDGKYVTEDGRDLLDVYKEALQQDPLLRHTAAEAAAHYGQGLTKLARTGYDAIPDLVLSIEYKNGSLRDVGQSRQYGSGDTDWLSEWKRELGVRI
>NZ_CP030097.1|WP_061047146.1|3919546_3920428_-|hypothetical-protein
MKKCILILFVSVIVLSGALFASSPSASASQKNSLQISAITGNHSFETANPVGYWKYKNIDTAILPKGEKDSYFTFTANKGERLYVRSSTRSEYKGMDIEIYNKNKVLISKGTEVINPDTALPFIYANTDAKENNETFYVKVSRGSYTDDMYFTLSIYDRIKSGSETFSFSGTAENKGNTSLSPNGSDSTVLRLDLTKQTSIPRDATVKRINTTATQTPSQGNTSHYIMSEENKVWHRALANSSTQGNYGITLDDNLSVSSIWNFKYNTLATAKSTMKNVKLKIDYEYDVTTQF
>NZ_CP030097.1|WP_061047145.1|3918790_3919444_+|ABC-2-transporter-permease
MRGLLLTNYYLVYRSFFAYTGLAILVSAVIFYFGDASMHRFVAMLIILFVVMPALEVIKYESKSGYDRYVLTLPVSRTNIVQSHYFFYLLIVVIGAVISYGIFLVYSLGSDEPIDGIFNIVSFGTFIVLFAGAIVYPLLYMIGPEKSDAIVIGGAMGGLFATFGLQSVVGYAAEQVPLSFLHINPSLYVPIIYLMIGVILYIISFFIATAIYHKKEF
>NZ_CP030097.1|WP_020955242.1|3917940_3918813_+|ABC-transporter-ATP-binding-protein
MSNLLEIRNISKSFGHKAVLKDVTFNVPAGSIVGFIGDNGAGKSTTFKTILGLISQDRGKVKIFGKENLDKHIKFKEDIGVVFDAMNLPAHLTIKQLNHVFKKLFGAWDQDHFYRLVHSFSLPMDKKVNTFSRGMSMKLSVAVALSHNAKLLLLDEATGGLDPSSRDDLLNELKSFVDKSNGGILLSSHIMTDVEKIASHIVIMKDGEILLNEEKDKVLESYTVIDVDEGQLAELDEEIVLAKRNHGSYWSVLVSDQQKLPNGVSANTISIEEISVFLTRSENIERSVTD
>NZ_CP030097.1|WP_061047144.1|3915498_3917301_+|glutamine--fructose-6-phosphate-transaminase-(isomerizing)
MCGIVGYIGQLDAKEILLKGLEKLEYRGYDSAGIAVANEQGVHVYKEKGRIADLREVVDHTVESQAGIGHTRWATHGEPSFLNAHPHQSALGRFTLVHNGVIENYVQLKREYLENVELKSDTDTEVVVQMIEQFVAGGLSTEEAFRKTLTLLKGSYAIALFDGENTDTIYVAKNKSPLLIGLGDTFNVVASDAMAMLQVTNEYVELLDKEMVIVTKDETVIKNLDGEVMTRASYIAELDASDIEKGTYPHYMLKETDEQPLVMRKIIQTYQDENGRLAVAGDVADAVAEADRIYIVACGTSYHAGLVGKQYIEMWANVPVEVHVASEFSYNMPLLSKKPLFIFLSQSGETADSRAVLVQVKALGHKALTITNVPGSTLSREADYTLLLHAGPEIAVASTKAYTAQIAVLAILASVAAERNGVDIGFDLVKELGIAANAMEALCDQKDEMEMIAREYLTVSRNAFFIGRGLDYFVCVEGALKLKEISYIQAEGFAGGELKHGTIALIEEGTPVFALATQEHVNLSIRGNVKEVAARGANTCIISLKGLEDADDRFILPEVNPALAPLVSVVPLQLIAYYAALHRGCDVDKPRNLAKSVTVE
>NZ_CP030097.1|WP_007408011.1|3913720_3915067_+|phosphoglucosamine-mutase
MGKYFGTDGVRGVANSELTPELAFKVGRFGGYVLTKDKQRPKVLIGRDTRISGHMLEGALVAGLLSIGAEVMRLGVISTPGVSYLTKAMDAEAGVMISASHNPVQDNGIKFFGGDGFKLSDEQEAEIERLMDEPEDKLPRPTGADLGLVNDYFEGVQKYLQFLKQTADEDFTGIHVALDCAHGATSSIATHLFADLDADVSTMGTSPNGLNINDGVGSTHPEALSAFVKEKNADIGLAFDGDGDRLIAVDEKGNIVDGDQIMYICAKYLKSEGRLKDDTVVSTVMSNLGFYKALEKEEIKSVQTAVGDRYVVEAMKKDGYNVGGEQSGHLIFLDYNTTGDGLLSAIMLVNTLKASGKTLSELADEMKKFPQLLVNVKVTDKYKVEENAKVKAVISEVEKEMNGDGRILVRPSGTEPLVRVMAEARTKELCDEYVTKIVDVVRTEMGAE
>NZ_CP030097.1|WP_007408012.1|3912263_3913703_+|YbbR-like-domain-containing-protein
MDKFLNNRWAVKIIALLFALLLYVAVNNNQAPTPKKPGESFFPTSTTDEATLTDIPVKAYYDEANYVVTGVPQTVNVTIKGSTSAVKKARQTKNFEIYADMNKLKTGTHKVELKAKNVSDGLTISINPSVTTVTIQEKTAESFPVEVEYYNKSKMKKGYTPQQPIISPKNVQITGSKNVIDNISLVKASVNLENANETIEKEVKVTVYDKDGNALPVDVEPSVIKVTVPVASPSKKLPFKIERKGSLPDGVSVASIDSNPSEVTVYGPQDVLDSLEFIDGVSLDLGKIDKDTDINADIPLPKGVTKVSPEKITLHVKVDSEDKKDFDNVGIKTVGLGGSQQIEFLDPESQAINITAKGSPANIKALKKSDIELYANVSDLDDGEHSVKLEVNGPQNVTWSLSKDTVKIKLTSKKNSSSNKNNGGSADSGNKNGTSGDADKDKNKNREDDTDSDQNKSQNQDQNQDQDEDGSSADSSSTE
>NZ_CP030097.1|WP_007408979.1|3923999_3924431_+|MarR-family-transcriptional-regulator
MSKQDPIELIEYELTTFIRRAVYLDNSDRKIGHLERAAYLLLRQLDEFGPARVKELAESFKLDISTLSRQAAALESKELIQRFSDPSDGRVSLFAITKLGKQRLKADKKMRLDRYQHMLDDWSGDEKEMFGRLLLRLNEAFID
>NZ_CP030097.1|WP_003156747.1|3924855_3926241_+|amino-acid-permease
MANKELKRGLGARHIQMIALGGTIGVGLFMGSSSTIGWTGPSVLLAYAISGIFIFFIMRAMGEMLYVEPSTGSFATFGHKYIHPLAGYMTAWSNWFQWVIVGMSEIIAVGSYMKYWFPDLPAWIPGIIAMAILGAANLISVKSFGEFEFWFAMIKIVTIILMIVAGIGIIFFGFGNGGHAIGLSNLWSHGGFFTNGFSGFFFALSLVVAAYQGVELIGITAGEAKDPQKTLRSAIQSIIWRILIFYIGAIFVIVTVYPWNELHSLGSPFVSTFAKVGITAAAGLINFVVITAAMSGCNSGIFSAGRMLYTLGVNGQAPKFFKKVSSSGVPIFGTLAVLIGLVIGVVLNYIAPPKIFVYVYSASVLPGMIPWFVILISHLGFRRAKGAELDKHPFKMPFAPFTNYLTIAFLLMVLIGMWFNKDTRISLVVGVIFLAIVTVSYYAFGIGKRMPGEKSKIEDAV
>NZ_CP030097.1|WP_061047147.1|3926333_3927038_+|noncanonical-pyrimidine-nucleotidase,-YjjG-family
MSHYRTLLFDIDNTLLDFTASETDALQKLFQGSKLELTAEVEARYKALNQGLWKAFEEGEMTRDEVVNTRFALLFKEYGLEADGVLMNQAYRQYLEEGHQMIDGAYELIERLSPLFDLYIVTNGVSRSQYKRLGDSGLYPFFKDVFVSEDTGFQKPMKEYFDYVFARIPGFSAEGGLIIGDSLSADIKGGQMAGIDTCWFNPGKKANESGIIPTYEIHSLDELYDVLNVEVVAL
>NZ_CP030097.1|WP_033575106.1|3927093_3928251_+|sensor-histidine-kinase
MKNLSSISTRVLIEKTIICFSLYSIISSIFKTPTFTASESAYLLIITIFLVVNDHIRLKYLSGQYSFRYYASFLVSNLLSGILLFKINCLGSQIYNIFLLIEIIVTTRKLPWTVVSLHFIIFFTALKAAGTSGKDILMSYLVIMAIIYLFRNVLLEKAKIQTLNKELQSVNTKLKNYSQKIQELTISKERTRIAQELHDSLGHYLIALTMNLEFADKIVSKNPSEAKQVINKSHDLSKECIINLREAVALLNDPAPQKGLLKSINEIFENFQQTNEIKFELDMDNKVESADPDIKNCLYKTVQESITNGIKHGNATFFSIRIRKSFEKISISITDNGTGCSEINKSNGIKGIEKRFAALGGEVDFHSGLDSGFTVEAVIPEIADL
>NZ_CP030097.1|WP_033575107.1|3928274_3928928_+|response-regulator-transcription-factor
MDIIIVDDQQIVREGLKMILSLHEEINIVGEASNGEHLLDLLKQIRPEIILMDIRMPIMDGIEATKLVKERYPDIKVIILTTFNDSEYIFTGLKSGADGYILKDSDSQEIIDSIKTACEGNILLNPKVTLKVVKALNSVEHNKELVQENNEKEQLVQLLTPREKEVAKQIMEGKSNKAISEALFITEGTVKNYVSRILEKLQMNNRTELSLYLQKHM
>NZ_CP030097.1|WP_061047148.1|3929145_3930078_+|ABC-transporter-ATP-binding-protein
MLELKKLTKKYDDFTAVNNISLTVEDGEVFGLLGPNGAGKSTMVSMISTVLAPTSGTIKVDNKSLKEKPIEIKKIMGVVPQDLALYETLSAKDNLNFFGSLYGLKGKKLKERTDEVLEIIELTDKKNQNVSEFSGGMKRRVNIGVALMNNPKLLILDEPTVGIDPQSRNHILETVKRLNKEKGMTVIYTSHYMEEVEYLCEKVAIVDHGSLIALGTKEELKENLNACDTLTVTFKGADEKALSRINSITGIDKVTVDHKQISMLVSTKERNIIEIVDDIKNLGIDLTSFKYEEVNLESIFLQITGKNLRD
>NZ_CP030097.1|WP_061047149.1|3930093_3931302_+|ABC-transporter-permease
MRKLFNLFFLDFKLLTKNKSFYLKLMLFPSLLILILGSVFSNSDSKIEAFDVAFYSADSGESVSLGDVLKDKVFKKGDLKDIIHLKEAESYNDGEKLVKERKAAAFIYVPEHFTKAVMNNGKTNIDLIGDNNKTIDKNIVQAVLEGFTKSVKTMSAEQQEVIKHISSGSSVPKEKIEKMMNDLADNDGISADIPKAATNKNAVPVDSMQYYSIAMVVMFSIMTAFVLVHSIVDERQNNTLFRIKSTPTLNIQYVLGKLTGIIFAILMQMTAVILISWVVFRMNWGNLFDIFVITVVYAFAIGSIVLFWGFTAKDHVAVSSMASPVLYIFSFLGGSFISKNGLPDSLRVVQEIIPNGKAINSYLKVKQNIGLSGMYIDLLELIGIGLIFVFINIMVFNRKKVA
>NZ_CP030097.1|WP_033575109.1|3931304_3932471_+|ABC-transporter-permease
MQLIAMIKHQLKLMLRNRLAIFATISVPLILTFLFSFSQDTDSKENLYIANADKSNYAAKLIEMIKEHKNIKVIKLTENELKKKVDDQDIPFGVVIEKGFGKDLTDNHKIKMKIIQNYENGSGTLLEQLVTNEAGTLKKVVKDSQYMSAQLHTDSKDIEKNIFKKLKNNSGIEVNDKTLSQGEHTQDNATVRLIGFLVMFIWFVVIQGLRTLIDEKENNTFSRLLSTPINYTKYVLSKMAATYISGIIHIIVIILAGKYLLKISIGHNIFAIAVMLAVYLFALTCITMIMVPFMRSQKQFTSAASIIIAVSGMIGGSFFSLEIAPKYMQVISKFTPEAWAIQSLNNIIFSKSTLGTEWLPIVIFASVGLLSIIVSFILISREIKKKKN
>NZ_CP030097.1|WP_024084829.1|3932520_3932700_+|hypothetical-protein
MGMEELFGMAELIIGVLMNVFIGKIGQVAFGKDNRTTRIILRVIGIFLIINGVSRAFHI
>NZ_CP030097.1|WP_061047150.1|3932772_3933468_+|thioesterase
MKKIFCLPYAGGSSAIYYKWRRLMSDSLTIHPIELKGRGTRINEDFYEHIDEAVNDIYDLIKDQIRECDYALFGHSMGGRLVYKLYSKISEMQQKKPNHIFFSGCGIPKTKKAEGMIHALPDNLFLQRIMDMGGTSEELLHNKELQQLYLPILRSDFKMLEGDVISENKTVMDCDITVLHGNNDKTISSDLICNWGHYTLGKCNFYTFEGNHFFIHQFSNEITDIINKTLR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP030097_1	1.2\|487162\|18\|NZ_CP030097\|CRT	487162-487179	18	NZ_CP030097.1	488080-488097	0	1.0
NZ_CP030097_1	1.12\|487837\|18\|NZ_CP030097\|CRT	487837-487854	18	NZ_CP030097.1	488053-488070	0	1.0
NZ_CP030097_1	1.3\|487216\|54\|NZ_CP030097\|CRT	487216-487269	54	NZ_CP030097.1	488026-488079	2	0.963

1. spacer 1.2|487162|18|NZ_CP030097|CRT matches to position: 488080-488097, mismatch: 0, identity: 1.0

ctactggagcgacgggtt	CRISPR spacer
ctactggagcgacgggtt	Protospacer
******************

2. spacer 1.12|487837|18|NZ_CP030097|CRT matches to position: 488053-488070, mismatch: 0, identity: 1.0

cgacgggaatcacgggtc	CRISPR spacer
cgacgggaatcacgggtc	Protospacer
******************

3. spacer 1.3|487216|54|NZ_CP030097|CRT matches to position: 488026-488079, mismatch: 2, identity: 0.963

ttacgggagataccggaccaactggggcgacgggaatcacgggtccaaccggag	CRISPR spacer
ttacgggagataccggatcaactggggcgacgggaatcacgggtccaactggag	Protospacer
*****************.*******************************.****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

393528 : 403419

Synechococcus_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016937017.1\|393528_394821_+	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	4.5e-19	27.3
WP_053104705.1\|394896_395616_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3G7P8	Synechococcus_phage	7.5e-48	44.7
WP_003155758.1\|395615_395870_+	phosphoribosylformylglycinamidine synthase subunit PurS	M4QPE7	Synechococcus_phage	4.7e-05	33.3
WP_007408898.1\|395866_396550_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_061046488.1\|396533_398762_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	5.5e-158	40.5
WP_007609856.1\|398737_400168_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	6.2e-54	32.7
WP_061046489.1\|400259_401300_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3F760	Synechococcus_phage	2.2e-64	41.7
WP_012116999.1\|401296_401884_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.0e-26	38.8
WP_007408903.1\|401880_403419_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	2.5e-77	50.5

DBSCAN-SWA_2

846640 : 927281

Bacillus_phage(33.33%)

integrase,holin,head,tail,portal,coat,tRNA,terminase

attL 891886:891936|attR 935119:935169

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039062893.1\|846640_847633_-\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_039062894.1\|848376_850011_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003155043.1\|850117_851053_+	ABC transporter permease	NA	NA	NA	NA
WP_007409113.1\|851056_851974_+	oligopeptide ABC transporter permease OppC	NA	NA	NA	NA
WP_003155039.1\|851986_853063_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.7e-16	29.9
WP_012117283.1\|853055_853973_+	oligopeptide ABC transporter ATP-binding protein OppF	M1HP82	Acanthocystis_turfacea_Chlorella_virus	1.5e-05	24.6
WP_052248589.1\|854079_855267_+	putative glycoside hydrolase	NA	NA	NA	NA
WP_007409110.1\|855384_855963_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_003155034.1\|856141_856537_+	transcriptional regulator Spx	NA	NA	NA	NA
WP_061046903.1\|856594_857251_-	TerC family protein	A0A0S4KZH7	Pseudomonas_phage	9.9e-31	41.0
WP_003155032.1\|857526_858183_+	adaptor protein MecA	NA	NA	NA	NA
WP_007409108.1\|858333_859494_+	competence protein CoiA	NA	NA	NA	NA
WP_113629831.1\|859721_861551_+	oligoendopeptidase F	NA	NA	NA	NA
WP_007409106.1\|862041_862944_-	DsbA family protein	NA	NA	NA	NA
WP_053104216.1\|862940_863339_-	thiol management oxidoreductase	NA	NA	NA	NA
WP_061046902.1\|863567_864254_-	lytic transglycosylase domain-containing protein	A0A1P8CWQ1	Bacillus_phage	7.9e-39	71.2
WP_061046901.1\|864258_864831_-	CYTH domain-containing protein	NA	NA	NA	NA
WP_003155020.1\|864955_865321_+	hypothetical protein	NA	NA	NA	NA
WP_003155019.1\|865348_865984_+	GTP diphosphokinase	NA	NA	NA	NA
WP_003155018.1\|866001_866802_+	NAD kinase	NA	NA	NA	NA
WP_053104219.1\|866816_867710_+	RluA family pseudouridine synthase	A0A2H4UV25	Bodo_saltans_virus	1.4e-06	31.2
WP_061046900.1\|867743_868493_-	bis(5'-nucleosyl)-tetraphosphatase PrpE	A0A1V0SJW2	Klosneuvirus	4.5e-11	26.8
WP_061046899.1\|868720_870565_+	sodium:proton antiporter	NA	NA	NA	NA
WP_007409099.1\|870814_871522_+	thiaminase II	NA	NA	NA	NA
WP_061046898.1\|871499_872117_+	thiazole tautomerase TenI	NA	NA	NA	NA
WP_061046897.1\|872100_873210_+	glycine oxidase ThiO	NA	NA	NA	NA
WP_007409096.1\|873206_873410_+	sulfur carrier protein ThiS	NA	NA	NA	NA
WP_100001371.1\|873406_874177_+	thiazole synthase	NA	NA	NA	NA
WP_061046896.1\|874173_875184_+	thiazole biosynthesis adenylyltransferase ThiF	NA	NA	NA	NA
WP_061046895.1\|875206_876019_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA
WP_003155001.1\|876149_876926_+	enoyl-ACP reductase FabI	NA	NA	NA	NA
WP_007409092.1\|877023_877632_+\|coat	spore coat protein	NA	NA	NA	NA
WP_007409091.1\|877690_878134_-\|coat	spore coat protein	NA	NA	NA	NA
WP_007610670.1\|878282_878765_-\|coat	spore coat protein	NA	NA	NA	NA
WP_007409089.1\|878915_879416_-\|coat	spore coat protein	NA	NA	NA	NA
WP_007409088.1\|879507_879819_-	hypothetical protein	NA	NA	NA	NA
WP_007409087.1\|879858_880245_-\|coat	spore coat protein	NA	NA	NA	NA
WP_007409086.1\|880415_880772_+	DUF1360 domain-containing protein	NA	NA	NA	NA
WP_003154990.1\|881058_881256_+	hypothetical protein	NA	NA	NA	NA
WP_007610678.1\|881348_881510_+	YjcZ family sporulation protein	NA	NA	NA	NA
WP_003154986.1\|881676_881931_+	sporulation protein	NA	NA	NA	NA
WP_061046894.1\|881999_884285_-	ATP-dependent helicase	A0A068EQC7	Bacillus_phage	3.1e-87	33.8
WP_061046893.1\|884404_884659_+	hypothetical protein	NA	NA	NA	NA
WP_061046892.1\|884727_885477_+	subclass B1 metallo-beta-lactamase	NA	NA	NA	NA
WP_039062912.1\|885518_886241_-	ABC transporter permease	NA	NA	NA	NA
WP_007409079.1\|886233_886971_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	2.6e-27	33.8
WP_007409078.1\|886971_887205_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_012117312.1\|887365_887797_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_007409076.1\|887801_888317_-	hypothetical protein	NA	NA	NA	NA
WP_007409075.1\|888342_889065_-	esterase family protein	NA	NA	NA	NA
WP_007409074.1\|889433_890555_+	methionine biosynthesis PLP-dependent protein	A0A0B5JD48	Pandoravirus	2.5e-18	26.7
WP_007409073.1\|890547_891723_+	cystathionine beta-lyase	NA	NA	NA	NA
891886:891936	attL	NA	NA	NA	NA
WP_061046891.1\|892066_893296_-\|integrase	site-specific integrase	A0A0K2CZ62	Paenibacillus_phage	4.6e-106	49.5
WP_061046890.1\|893300_893822_-	ImmA/IrrE family metallo-endopeptidase	A0A2H4JA43	uncultured_Caudovirales_phage	1.6e-55	65.2
WP_061046889.1\|893888_894461_-	hypothetical protein	NA	NA	NA	NA
WP_061046888.1\|894706_895072_-	helix-turn-helix transcriptional regulator	A0A2H4J6F9	uncultured_Caudovirales_phage	2.1e-14	41.9
WP_061046887.1\|895233_895464_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014470596.1\|895474_895666_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_015388430.1\|895816_896389_+	helix-turn-helix transcriptional regulator	A0A2H4J884	uncultured_Caudovirales_phage	2.0e-59	56.1
WP_061046886.1\|896385_896643_+	hypothetical protein	A0A2H4J4M9	uncultured_Caudovirales_phage	1.1e-06	37.2
WP_014470593.1\|896639_896843_+	hypothetical protein	NA	NA	NA	NA
WP_007408617.1\|896944_897133_+	hypothetical protein	NA	NA	NA	NA
WP_061046885.1\|897129_898047_+	hypothetical protein	A0A0A7S0A9	Clostridium_phage	1.1e-88	62.5
WP_076983708.1\|898066_898804_+	hypothetical protein	A0A0A7RUC1	Clostridium_phage	1.9e-51	44.9
WP_061046883.1\|899001_899703_+	DnaD domain protein	A0A2H4J6G9	uncultured_Caudovirales_phage	5.8e-05	34.1
WP_141228462.1\|899587_900535_+	ATP-binding protein	A0A0K2CPA5	Brevibacillus_phage	2.0e-56	50.7
WP_061046882.1\|900769_901198_+	RusA family crossover junction endodeoxyribonuclease	S6B1L9	Thermus_phage	9.6e-43	63.5
WP_003155894.1\|901480_901684_+	hypothetical protein	A0A2H4J4M6	uncultured_Caudovirales_phage	3.4e-22	75.4
WP_015388418.1\|901715_902000_+	hypothetical protein	NA	NA	NA	NA
WP_061046881.1\|901996_902257_+	hypothetical protein	F8WQ54	Bacillus_phage	7.4e-06	42.0
WP_031378527.1\|902725_903304_-	hypothetical protein	NA	NA	NA	NA
WP_061046880.1\|903816_904332_+	sigma-70 family RNA polymerase sigma factor	A0A1L2JY33	Aeribacillus_phage	6.4e-25	40.9
WP_042635075.1\|904456_904669_+	helix-turn-helix domain-containing protein	A0A1Z1LZP5	Bacillus_phage	9.6e-12	51.4
WP_061046878.1\|904987_905941_+	DUF2971 domain-containing protein	NA	NA	NA	NA
WP_061046877.1\|906076_906334_+	hypothetical protein	NA	NA	NA	NA
WP_061046876.1\|906489_907245_+	hypothetical protein	A0A2H4J4R0	uncultured_Caudovirales_phage	6.9e-52	56.3
WP_113629795.1\|907231_908506_+\|terminase	PBSX family phage terminase large subunit	A0A0K2CP71	Brevibacillus_phage	1.1e-179	72.6
WP_061046875.1\|908527_909976_+\|portal	phage portal protein	A0A1Q1PVT0	Bacillus_phage	5.4e-122	48.1
WP_061046874.1\|909962_910880_+\|head	phage head morphogenesis protein	A0A1Q1PVS0	Bacillus_phage	6.5e-81	51.2
WP_061046873.1\|911040_911706_+	scaffolding protein	I1TLE1	Bacillus_phage	1.0e-22	48.0
WP_061046872.1\|911718_912705_+	hypothetical protein	D2J006	Enterococcus_phage	2.1e-48	37.4
WP_076983707.1\|912682_912967_+	fibronectin type III domain-containing protein	Q0PDK9	Bacillus_phage	3.3e-23	65.4
WP_013351227.1\|912967_913159_+	hypothetical protein	NA	NA	NA	NA
WP_061046871.1\|913163_913460_+	hypothetical protein	Q4ZBR3	Staphylococcus_phage	7.4e-10	39.4
WP_061046870.1\|913456_913795_+\|head	phage head closure protein	NA	NA	NA	NA
WP_061046869.1\|913787_914204_+	HK97 gp10 family phage protein	O48447	Bacillus_phage	4.3e-32	54.2
WP_015239630.1\|914222_914621_+	DUF3168 domain-containing protein	W8EK61	Geobacillus_phage	4.9e-25	44.6
WP_053075464.1\|914634_915147_+\|tail	phage major tail protein, TP901-1 family	Q0PDK9	Bacillus_phage	1.5e-26	42.4
WP_076983182.1\|915088_915403_+	fibronectin type III domain-containing protein	Q0PDK9	Bacillus_phage	4.6e-26	77.8
WP_076983168.1\|915416_915659_+	fibronectin type III domain-containing protein	NA	NA	NA	NA
WP_061046868.1\|915715_916222_+	hypothetical protein	I6T7F0	Staphylococcus_virus	2.3e-11	33.9
WP_061046963.1\|916269_916578_+	hypothetical protein	NA	NA	NA	NA
WP_113629796.1\|916582_921724_+	hypothetical protein	Q4ZC60	Staphylococcus_virus	3.3e-36	26.9
WP_061046867.1\|921720_922485_+\|tail	phage tail family protein	NA	NA	NA	NA
WP_061046866.1\|922497_925881_+	hypothetical protein	Q5YA57	Bacillus_phage	1.3e-131	45.9
WP_061046865.1\|925894_926284_+	hypothetical protein	NA	NA	NA	NA
WP_015388395.1\|926422_926590_+	XkdX family protein	NA	NA	NA	NA
WP_007408578.1\|926602_926824_+	hypothetical protein	NA	NA	NA	NA
WP_061046864.1\|926858_927281_+\|holin	holin	D6R405	Bacillus_phage	3.9e-57	85.7
935119:935169	attR	NA	NA	NA	NA

DBSCAN-SWA_3

980972 : 1012732

Bacillus_phage(32.26%)

holin,plate,tail,portal,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_087920760.1\|980972_982109_+	tetratricopeptide repeat protein	A0A1P8CWN8	Bacillus_phage	1.3e-94	47.9
WP_003154881.1\|982098_982233_+	PhrA family phosphatase inhibitor	NA	NA	NA	NA
WP_003154880.1\|982375_983329_+	LysM peptidoglycan-binding domain-containing protein	A0A218KC88	Bacillus_phage	1.1e-62	69.3
WP_007610770.1\|983366_983744_-	PH domain-containing protein	A5GYQ0	Lactococcus_phage	1.5e-15	41.4
WP_020955680.1\|983856_984462_+	poly-gamma-glutamate hydrolase family protein	A0A0Y0AJU6	Bacillus_phage	3.0e-42	47.8
WP_032866122.1\|984600_985191_-	ImmA/IrrE family metallo-endopeptidase	A0A2H4JA43	uncultured_Caudovirales_phage	3.0e-39	51.7
WP_061046848.1\|985339_985678_-	helix-turn-helix transcriptional regulator	A0A2H4J6F9	uncultured_Caudovirales_phage	2.4e-17	44.9
WP_032866121.1\|985868_986048_+	hypothetical protein	NA	NA	NA	NA
WP_025284603.1\|986037_986865_+	hypothetical protein	S6BFM4	Thermus_phage	2.2e-19	49.0
WP_061046847.1\|986764_987565_+	ATP-binding protein	A6XMI1	Bacillus_virus	3.0e-58	45.3
WP_007407281.1\|987829_988171_+	hypothetical protein	NA	NA	NA	NA
WP_007407280.1\|988160_988364_+	hypothetical protein	A0A2H4J4M6	uncultured_Caudovirales_phage	1.9e-12	50.0
WP_012117362.1\|988477_988990_+	sigma-70 family RNA polymerase sigma factor	A0A0K2CNQ1	Brevibacillus_phage	2.9e-22	44.6
WP_007407278.1\|989102_989900_+\|terminase	terminase	A0A0S2MVB6	Bacillus_phage	4.0e-58	49.8
WP_032866117.1\|989896_991195_+\|terminase	PBSX family phage terminase large subunit	M4ZRM5	Bacillus_phage	9.4e-150	59.2
WP_106080344.1\|991243_992629_+\|portal	phage portal protein	A0A1B1P7C8	Bacillus_phage	1.1e-137	55.6
WP_007407275.1\|992654_993500_+\|portal	phage portal protein	A0A1B1P7E4	Bacillus_phage	2.5e-55	58.1
WP_053104250.1\|993526_994462_+\|portal	phage portal protein	A0A1B1P7E3	Bacillus_phage	4.3e-104	63.1
WP_020955683.1\|994478_994862_+	DUF3199 family protein	NA	NA	NA	NA
WP_020955684.1\|994858_995215_+	DUF3599 family protein	NA	NA	NA	NA
WP_020955685.1\|995211_995715_+	HK97 gp10 family phage protein	A0A249XXA4	Clostridium_phage	1.6e-36	40.4
WP_007407270.1\|995711_996158_+	hypothetical protein	NA	NA	NA	NA
WP_007407269.1\|996154_996364_+	hypothetical protein	NA	NA	NA	NA
WP_007407268.1\|996363_997761_+\|portal	phage portal protein	A0A0A7RTT5	Clostridium_phage	2.0e-81	40.4
WP_003154837.1\|997762_998206_+\|tail	phage tail tube protein	A0A0K2CNG3	Brevibacillus_phage	8.4e-26	45.2
WP_003154836.1\|998282_998729_+\|portal	phage portal protein	A0A0A7RTY8	Clostridium_phage	1.0e-10	35.8
WP_015239684.1\|998770_998923_+	hypothetical protein	NA	NA	NA	NA
WP_113629799.1\|998910_1003911_+	transglycosylase SLT domain-containing protein	A0A1L2JY60	Aeribacillus_phage	4.3e-41	46.6
WP_061046846.1\|1003903_1004563_+	LysM peptidoglycan-binding domain-containing protein	A0A090DBR9	Clostridium_phage	2.9e-22	33.5
WP_061046845.1\|1004576_1005554_+	hypothetical protein	A0A1L6BY20	Clostridium_phage	8.3e-34	30.2
WP_007407264.1\|1005553_1005820_+	DUF2577 family protein	S6C459	Thermus_phage	1.3e-05	37.5
WP_020955689.1\|1005923_1006349_+	DUF2634 domain-containing protein	A0A2H4J6K5	uncultured_Caudovirales_phage	2.5e-11	35.9
WP_039062947.1\|1006341_1007388_+\|plate	baseplate J/gp47 family protein	S6AVU3	Thermus_phage	1.1e-68	43.2
WP_039062948.1\|1007371_1007950_+	YmfQ family protein	A0A2H4J717	uncultured_Caudovirales_phage	3.1e-12	31.0
WP_003154822.1\|1007946_1008219_+	hypothetical protein	NA	NA	NA	NA
WP_061046843.1\|1008221_1009844_+	hypothetical protein	A0A1P8CWR7	Bacillus_phage	1.4e-41	39.7
WP_039062950.1\|1009856_1010228_+	YomQ/XkdW protein, phage-like element PBSX	NA	NA	NA	NA
WP_039062951.1\|1010232_1010430_+	XkdX family protein	A0A2H4JAA1	uncultured_Caudovirales_phage	7.3e-14	61.8
WP_039062952.1\|1010486_1011248_+	hypothetical protein	NA	NA	NA	NA
WP_003154815.1\|1011299_1011563_+	protein xhlA	A0A2H4JD40	uncultured_Caudovirales_phage	8.8e-23	63.1
WP_003154813.1\|1011576_1011840_+\|holin	phage holin	A0A2H4J6M0	uncultured_Caudovirales_phage	2.3e-23	65.5
WP_007407257.1\|1011853_1012732_+	LysM peptidoglycan-binding domain-containing protein	Q9ZXD7	Bacillus_phage	3.7e-81	60.5

DBSCAN-SWA_4

1651858 : 1812778

101

Bacillus_phage(62.96%)

integrase,bacteriocin,head,plate,holin,tail,protease,portal,capsid,tRNA,terminase

attL 1804966:1804981|attR 1806938:1806953

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_031379075.1\|1651858_1652068_+\|bacteriocin	bacteriocin-like WGxF protein	NA	NA	NA	NA
WP_052248596.1\|1652371_1652641_+	hypothetical protein	NA	NA	NA	NA
WP_039063171.1\|1652931_1654068_-\|holin	choline esterase	NA	NA	NA	NA
WP_032865987.1\|1654327_1655827_-	cellulase family glycosylhydrolase	NA	NA	NA	NA
WP_007410147.1\|1656274_1656586_+	DUF4870 domain-containing protein	A0A2H4J741	uncultured_Caudovirales_phage	5.9e-10	41.7
WP_032871589.1\|1656639_1658037_-	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	2.2e-27	28.4
WP_061046744.1\|1658039_1658747_-	response regulator transcription factor	W8CYM9	Bacillus_phage	4.0e-38	38.5
WP_020955895.1\|1658888_1660160_-	glucuronoxylanase	NA	NA	NA	NA
WP_053104450.1\|1660221_1661757_-	carbohydrate-binding protein	NA	NA	NA	NA
WP_061046743.1\|1661930_1669790_-	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	2.4e-91	28.1
WP_061046742.1\|1669873_1685998_-	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	1.5e-90	27.5
WP_061046741.1\|1686042_1697991_-	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	2.8e-115	28.4
WP_038458191.1\|1698010_1699213_-	ACP S-malonyltransferase	NA	NA	NA	NA
WP_007410137.1\|1699771_1700557_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA
WP_014305098.1\|1700569_1701232_-	CoA transferase subunit B	NA	NA	NA	NA
WP_007410135.1\|1701249_1701951_-	CoA transferase subunit A	NA	NA	NA	NA
WP_020954028.1\|1701975_1703412_-	GntP family permease	NA	NA	NA	NA
WP_015239958.1\|1703717_1704914_-	cytochrome P450	NA	NA	NA	NA
WP_007410132.1\|1704915_1705935_-	biotin synthase BioB	NA	NA	NA	NA
WP_061046740.1\|1705937_1706639_-	ATP-dependent dethiobiotin synthetase BioD	NA	NA	NA	NA
WP_061046739.1\|1706635_1707796_-	8-amino-7-oxononanoate synthase	D2TEZ5	Emiliania_huxleyi_virus	1.6e-31	26.5
WP_061046738.1\|1707785_1709132_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	A0A1V0SKB7	Klosneuvirus	2.9e-13	23.2
WP_047935774.1\|1709128_1709899_-	6-carboxyhexanoate--CoA ligase	NA	NA	NA	NA
WP_014418060.1\|1710166_1710574_+	GtrA family protein	NA	NA	NA	NA
WP_061046737.1\|1710580_1711480_+	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	4.0e-83	55.9
WP_061046736.1\|1711547_1712138_+	DedA family protein	NA	NA	NA	NA
WP_007410124.1\|1712192_1713722_-	acyl-CoA carboxylase subunit beta	NA	NA	NA	NA
WP_042635250.1\|1713739_1714519_-	enoyl-CoA hydratase	NA	NA	NA	NA
WP_007410122.1\|1714532_1715432_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA
WP_007410121.1\|1715447_1715660_-	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit	NA	NA	NA	NA
WP_032865960.1\|1715656_1717006_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
WP_042635251.1\|1717027_1718668_-	AMP-binding protein	Q75ZG1	Hepacivirus	1.4e-46	26.4
WP_007410118.1\|1718712_1719855_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_007410117.1\|1719995_1721534_-	family 10 glycosylhydrolase	NA	NA	NA	NA
WP_007410116.1\|1721655_1722036_-	DUF1360 domain-containing protein	NA	NA	NA	NA
WP_061046735.1\|1722109_1725913_-	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	1.8e-84	26.6
WP_113629804.1\|1725931_1736707_-	amino acid adenylation domain-containing protein	A0A2K9L3I8	Tupanvirus	1.3e-159	26.7
WP_061046733.1\|1736732_1744382_-	non-ribosomal peptide synthetase	A0A2K9L3I8	Tupanvirus	2.2e-73	26.0
WP_039063201.1\|1744397_1752095_-	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	5.9e-159	26.7
WP_113629805.1\|1752120_1759779_-	amino acid adenylation domain-containing protein	A0A2K9KZV5	Tupanvirus	1.9e-80	23.5
WP_061046732.1\|1760258_1761734_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA
WP_053104033.1\|1761752_1762721_-	aldose 1-epimerase	NA	NA	NA	NA
WP_042635256.1\|1762837_1764226_-	MATE family efflux transporter	NA	NA	NA	NA
WP_061046731.1\|1764454_1764997_+	hypothetical protein	NA	NA	NA	NA
WP_061046730.1\|1765339_1767166_+	hypothetical protein	A0A1P8CWI7	Bacillus_phage	1.3e-104	41.5
WP_061046729.1\|1767181_1767622_+	SMI1/KNR4 family protein	NA	NA	NA	NA
WP_061046728.1\|1767814_1768540_+	hypothetical protein	NA	NA	NA	NA
WP_061046727.1\|1768579_1769593_-	N-acetylmuramoyl-L-alanine amidase	A0A1J0MS59	Bacillus_phage	2.4e-185	96.1
WP_015239640.1\|1769640_1770063_-\|holin	holin	D6R405	Bacillus_phage	3.8e-60	89.5
WP_013353491.1\|1770112_1770301_-	XkdX family protein	Q9ZXD9	Bacillus_phage	5.3e-30	96.8
WP_061046726.1\|1770297_1770660_-	hypothetical protein	Q9ZXE0	Bacillus_phage	6.4e-56	92.5
WP_094031763.1\|1770656_1771934_-\|plate	BppU family phage baseplate upper protein	D6R402	Bacillus_phage	1.1e-153	82.1
WP_061046725.1\|1771950_1774512_-	peptidase G2	D6R401	Bacillus_phage	0.0e+00	94.4
WP_061046724.1\|1774551_1776255_-	alkaline phosphatase	D6R400	Bacillus_phage	4.0e-310	98.8
WP_061046723.1\|1776266_1777106_-\|tail	phage tail family protein	D6R3Z9	Bacillus_phage	1.3e-160	98.6
WP_061046722.1\|1777105_1780981_-\|tail	phage tail tape measure protein	D6R3Z8	Bacillus_phage	0.0e+00	97.4
WP_061046721.1\|1781181_1781520_-	hypothetical protein	Q9ZXE8	Bacillus_phage	2.3e-52	91.1
WP_061046720.1\|1781575_1782184_-\|tail	phage tail protein	Q9ZXE9	Bacillus_phage	2.0e-102	91.5
WP_081093610.1\|1782184_1782673_-	DUF3168 domain-containing protein	Q9ZXF0	Bacillus_phage	4.4e-84	97.5
WP_015968221.1\|1782561_1782945_-	HK97 gp10 family phage protein	Q9ZXF1	Bacillus_phage	3.8e-67	100.0
WP_061046718.1\|1782937_1783297_-\|head	phage head closure protein	Q9ZXF2	Bacillus_phage	3.2e-60	99.2
WP_024085414.1\|1783229_1783577_-\|head,tail	phage gp6-like head-tail connector protein	Q9ZXF3	Bacillus_phage	5.2e-55	93.0
WP_094031764.1\|1783591_1784182_-	collagen-like protein	D6R3Z0	Bacillus_phage	8.6e-34	84.7
WP_094031765.1\|1784208_1784520_-	hypothetical protein	Q9ZXF5	Bacillus_phage	2.9e-33	78.0
WP_032858696.1\|1784532_1785735_-\|capsid	phage major capsid protein	Q9ZXF6	Bacillus_phage	6.0e-159	72.8
WP_061046716.1\|1785774_1786401_-\|head,protease	HK97 family phage prohead protease	Q9ZXF7	Bacillus_phage	2.7e-110	96.6
WP_061046715.1\|1786390_1787641_-\|portal	phage portal protein	D6R3Y6	Bacillus_phage	3.5e-242	98.6
WP_032858702.1\|1787646_1787877_-	hypothetical protein	Q9ZXF9	Bacillus_phage	7.2e-21	81.7
WP_032858704.1\|1787888_1789598_-\|terminase	terminase large subunit	D6R3Y4	Bacillus_phage	0.0e+00	97.2
WP_015968210.1\|1789597_1790104_-\|terminase	phage terminase small subunit P27 family	Q9ZXG2	Bacillus_phage	8.8e-88	100.0
WP_061046714.1\|1790190_1790517_-	hypothetical protein	Q9T203	Bacillus_phage	7.0e-54	97.2
WP_061046713.1\|1790485_1790860_-	HNH endonuclease	Q38456	Bacillus_phage	3.0e-69	95.2
WP_022553324.1\|1790994_1791624_-	SLATT domain-containing protein	NA	NA	NA	NA
WP_061046712.1\|1791737_1792403_-	hypothetical protein	NA	NA	NA	NA
WP_038458303.1\|1792938_1793481_-\|integrase	tyrosine-type recombinase/integrase	D2XR58	Bacillus_phage	1.2e-61	65.6
WP_061046711.1\|1793477_1793930_-	ArpU family transcriptional regulator	S6AVV9	Thermus_phage	1.7e-37	56.6
WP_048367324.1\|1793948_1794164_-	hypothetical protein	NA	NA	NA	NA
WP_061046710.1\|1794262_1795477_-	DUF4935 domain-containing protein	NA	NA	NA	NA
WP_061046709.1\|1795754_1796189_-	hypothetical protein	A0A2H4J8A0	uncultured_Caudovirales_phage	5.3e-49	70.8
WP_017417491.1\|1796297_1796648_+	hypothetical protein	NA	NA	NA	NA
WP_061046708.1\|1796791_1797616_-	DNA adenine methylase	U5P0W8	Brevibacillus_phage	1.5e-89	58.3
WP_061046707.1\|1797619_1797880_-	hypothetical protein	F8WQ54	Bacillus_phage	7.4e-06	40.7
WP_061046706.1\|1797876_1798212_-	hypothetical protein	NA	NA	NA	NA
WP_061046705.1\|1798244_1798448_-	hypothetical protein	A0A2H4J4M6	uncultured_Caudovirales_phage	9.8e-14	55.4
WP_113629806.1\|1798695_1798836_-	BH0509 family protein	NA	NA	NA	NA
WP_061046704.1\|1798941_1799490_-	hypothetical protein	A0A0K2CYJ0	Paenibacillus_phage	7.8e-05	34.9
WP_024085441.1\|1799641_1799791_-	hypothetical protein	NA	NA	NA	NA
WP_061046959.1\|1799805_1800639_-	ATP-binding protein	Q2I8C8	Bacillus_phage	2.7e-33	34.8
WP_094031766.1\|1800622_1801495_-	replication protein	V9QKF6	Oenococcus_phage	1.3e-49	41.7
WP_061046703.1\|1801487_1801706_-	hypothetical protein	NA	NA	NA	NA
WP_014305165.1\|1801723_1802047_-	DUF771 domain-containing protein	Q9MC19	Lactococcus_phage	4.6e-13	40.7
WP_061046702.1\|1802113_1802317_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014305167.1\|1802481_1802880_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_061046701.1\|1803311_1804412_-	hypothetical protein	NA	NA	NA	NA
WP_061046700.1\|1804654_1805761_+\|integrase	site-specific integrase	Q5YAA6	Bacillus_phage	4.6e-113	58.3
1804966:1804981	attL	NA	NA	NA	NA
WP_007407359.1\|1806034_1806580_-\|integrase	site-specific integrase	A0A0S2GLG4	Bacillus_phage	5.5e-43	49.2
WP_003153848.1\|1806895_1807126_-	excisionase family DNA-binding protein	NA	NA	NA	NA
1806938:1806953	attR	NA	NA	NA	NA
WP_007407357.1\|1807369_1809145_+	gamma-glutamyltransferase	NA	NA	NA	NA
WP_007407356.1\|1809191_1810367_-	MFS transporter	NA	NA	NA	NA
WP_007407355.1\|1810509_1810812_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_020954032.1\|1810858_1812778_-\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	1.4e-138	39.8

DBSCAN-SWA_5

2044816 : 2051070

Staphylococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007409428.1\|2044816_2045410_-	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	2.6e-14	36.6
WP_007409427.1\|2045399_2046155_-	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	2.9e-10	25.7
WP_003153376.1\|2046362_2046452_+	YjcZ family sporulation protein	NA	NA	NA	NA
WP_020956020.1\|2046540_2047062_+	DUF309 domain-containing protein	NA	NA	NA	NA
WP_003153373.1\|2047127_2047502_-	GNAT family N-acetyltransferase RibT	NA	NA	NA	NA
WP_003153372.1\|2047618_2048083_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.2e-43	59.3
WP_047935905.1\|2048115_2049312_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	2.8e-116	54.9
WP_047935906.1\|2049326_2049974_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.5e-39	44.3
WP_061046646.1\|2049954_2051070_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	9.8e-55	36.6

DBSCAN-SWA_6

3376475 : 3421592

Cafeteria_roenbergensis_virus(11.11%)

coat,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003151043.1\|3376475_3377135_-\|protease	site-2 protease family protein	NA	NA	NA	NA
WP_003151042.1\|3377240_3377429_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA
WP_020957978.1\|3377466_3377886_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_032865071.1\|3378271_3379651_+	amino acid permease	NA	NA	NA	NA
WP_007407653.1\|3379716_3380217_-	YwgA family protein	NA	NA	NA	NA
WP_007407654.1\|3380256_3381558_-	HD domain-containing protein	E3T4P8	Cafeteria_roenbergensis_virus	1.0e-23	29.5
WP_003151034.1\|3381716_3381941_-	DUF1450 domain-containing protein	NA	NA	NA	NA
WP_007407656.1\|3382143_3382917_+	RsfA family transcriptional regulator	NA	NA	NA	NA
WP_079891039.1\|3383216_3383492_+	PadR family transcriptional regulator	NA	NA	NA	NA
WP_020957980.1\|3383492_3384047_+	DUF1700 domain-containing protein	NA	NA	NA	NA
WP_020957981.1\|3384144_3385065_+	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	1.7e-36	36.6
WP_025285429.1\|3385061_3386015_+	ABC transporter permease	NA	NA	NA	NA
WP_020957983.1\|3386004_3386841_-	hypothetical protein	NA	NA	NA	NA
WP_020957984.1\|3386831_3387629_-	hypothetical protein	NA	NA	NA	NA
WP_007407663.1\|3387597_3388521_-	hypothetical protein	NA	NA	NA	NA
WP_003151018.1\|3388569_3388749_-	hypothetical protein	NA	NA	NA	NA
WP_007407665.1\|3388900_3389764_-	lipoate--protein ligase family protein	NA	NA	NA	NA
WP_007407666.1\|3389810_3390710_-	LysR family transcriptional regulator	A0A2H4J8I9	uncultured_Caudovirales_phage	2.1e-07	40.2
WP_061047013.1\|3390825_3391803_+	putative sulfate exporter family transporter	NA	NA	NA	NA
WP_007407668.1\|3391840_3392812_-	phosphate acetyltransferase	NA	NA	NA	NA
WP_003151011.1\|3393074_3393839_+	heme-dependent peroxidase	NA	NA	NA	NA
WP_007407669.1\|3393958_3394738_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_032869430.1\|3394754_3395954_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_007407671.1\|3395966_3397148_-	MFS transporter	NA	NA	NA	NA
WP_020957989.1\|3397144_3398563_-	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_020957990.1\|3398580_3399342_-	dihydroanticapsin 7-dehydrogenase	Q06VL0	Trichoplusia_ni_ascovirus	1.7e-21	30.5
WP_032869426.1\|3399338_3400049_-	cupin domain-containing protein	NA	NA	NA	NA
WP_015418458.1\|3400038_3400653_-	bacilysin biosynthesis protein BacA	NA	NA	NA	NA
WP_061047012.1\|3400814_3402053_-	MFS transporter	NA	NA	NA	NA
WP_061047011.1\|3402275_3403478_+	multidrug effflux MFS transporter	S4TR35	Salmonella_phage	1.9e-27	26.9
WP_061047010.1\|3403510_3404929_-	amino acid permease	NA	NA	NA	NA
WP_007407678.1\|3404953_3406636_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA
WP_061047009.1\|3406707_3408255_-	L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_025285442.1\|3408462_3409749_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA
WP_022537147.1\|3409937_3410399_-	member of the processed secretome	NA	NA	NA	NA
WP_007407682.1\|3410614_3411070_-\|coat	spore coat protein	NA	NA	NA	NA
WP_007407683.1\|3411066_3411915_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	4.1e-37	37.3
WP_007407684.1\|3411935_3412883_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	5.9e-69	42.9
WP_003150981.1\|3412885_3413623_-	NTP transferase domain-containing protein	G3MA50	Bacillus_virus	5.0e-47	42.7
WP_061047008.1\|3413650_3414655_-\|coat	spore coat protein	NA	NA	NA	NA
WP_113629821.1\|3414656_3415400_-\|coat	spore coat protein	NA	NA	NA	NA
WP_061047006.1\|3415389_3416511_-\|coat	spore coat protein	NA	NA	NA	NA
WP_007407690.1\|3416510_3417374_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_007407691.1\|3417374_3418544_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA
WP_007407692.1\|3418566_3419991_-	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA
WP_015240806.1\|3419995_3420766_-	glycosyltransferase family 2 protein	A0A0F7L2F7	uncultured_marine_virus	5.8e-06	25.4
WP_007614539.1\|3421046_3421592_+\|coat	spore coat protein GerQ	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP030098

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1042 : 43033

Bacillus_phage(65.79%)

terminase,tail,portal,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_113629842.1\|1042_1345_+	hypothetical protein	A0A0S2SXL7	Bacillus_phage	1.4e-16	56.2
WP_162782346.1\|1344_1509_+	hypothetical protein	A0A0S2SXL7	Bacillus_phage	7.9e-14	70.4
WP_113629843.1\|1609_1849_+	hypothetical protein	A0A2H4JBR7	uncultured_Caudovirales_phage	8.6e-17	62.7
WP_113629844.1\|2204_2489_+	hypothetical protein	NA	NA	NA	NA
WP_113629845.1\|2476_2773_+	hypothetical protein	A0A2P1JTW1	Anoxybacillus_phage	5.3e-16	45.5
WP_113629847.1\|3061_3346_+	hypothetical protein	A0A288WG88	Bacillus_phage	4.7e-06	38.6
WP_162782347.1\|3315_3540_+	hypothetical protein	NA	NA	NA	NA
WP_162782348.1\|6163_6898_+	hypothetical protein	U5PU90	Bacillus_phage	9.0e-41	42.3
WP_048367533.1\|6884_7142_+	hypothetical protein	NA	NA	NA	NA
WP_048367534.1\|7211_7634_+\|holin	holin family protein	D6R405	Bacillus_phage	4.2e-51	78.6
WP_061046992.1\|9019_9829_+	hypothetical protein	NA	NA	NA	NA
WP_079979775.1\|10295_11135_+	poly-gamma-glutamate hydrolase family protein	O64134	Bacillus_phage	1.9e-74	57.7
WP_048367544.1\|11205_11439_+	hypothetical protein	NA	NA	NA	NA
WP_071182137.1\|11769_12642_+	hypothetical protein	NA	NA	NA	NA
WP_061046991.1\|12718_12898_-	hypothetical protein	NA	NA	NA	NA
WP_145925697.1\|12983_13859_+	AAA family ATPase	A0A0K2FLP4	Brevibacillus_phage	3.2e-53	42.5
WP_071182136.1\|13848_14163_+	hypothetical protein	NA	NA	NA	NA
WP_048367548.1\|14406_14622_+	hypothetical protein	NA	NA	NA	NA
WP_069013412.1\|14645_15041_-	helix-turn-helix transcriptional regulator	A0A1B0Y2R0	Lactobacillus_phage	2.3e-11	37.3
WP_061046990.1\|15270_15510_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_048367550.1\|15542_15734_+	hypothetical protein	NA	NA	NA	NA
WP_048367554.1\|16358_16958_+	hypothetical protein	D7RWM7	Brochothrix_phage	1.3e-24	37.4
WP_048367555.1\|16961_17624_+	single-stranded DNA-binding protein	A0A1J0MF78	Staphylococcus_phage	7.6e-31	36.8
WP_048367559.1\|17862_18081_+	hypothetical protein	NA	NA	NA	NA
WP_048367563.1\|18406_18943_+	hypothetical protein	Q0H273	Geobacillus_phage	6.2e-39	53.4
WP_048367565.1\|18936_19386_+	single-stranded DNA-binding protein	M5ABV5	Bacillus_phage	1.4e-52	71.3
WP_155641729.1\|19567_19741_+	hypothetical protein	NA	NA	NA	NA
WP_048367567.1\|20019_20355_+	hypothetical protein	NA	NA	NA	NA
WP_048367569.1\|20354_20660_+	hypothetical protein	NA	NA	NA	NA
WP_079979778.1\|20656_20968_+	hypothetical protein	F8WQ59	Bacillus_phage	1.5e-16	47.3
WP_048367575.1\|21456_21642_+	hypothetical protein	NA	NA	NA	NA
WP_048367577.1\|21638_22043_+	hypothetical protein	W8CYU3	Bacillus_phage	2.6e-18	40.5
WP_048367579.1\|22088_22307_+	hypothetical protein	NA	NA	NA	NA
WP_061046988.1\|22312_22753_+	hypothetical protein	M1HNE7	Bacillus_virus	7.6e-27	51.4
WP_053075460.1\|22767_23220_+	hypothetical protein	NA	NA	NA	NA
WP_061046987.1\|23216_23429_+	hypothetical protein	A0A2H4JDM6	uncultured_Caudovirales_phage	8.7e-13	52.9
WP_061046986.1\|23452_23908_+	hypothetical protein	NA	NA	NA	NA
WP_061046985.1\|24175_24520_+	hypothetical protein	Q38579	Bacillus_phage	1.3e-29	59.6
WP_061046984.1\|24884_25397_+	hypothetical protein	A0A0A7AQW8	Bacillus_phage	2.3e-14	35.8
WP_061046983.1\|25589_26237_+\|terminase	terminase small subunit	A0A2K9V3C4	Faecalibacterium_phage	3.6e-17	38.6
WP_061046982.1\|26217_27495_+\|terminase	PBSX family phage terminase large subunit	D2XPX9	Bacillus_virus	1.6e-181	70.8
WP_061046981.1\|27507_29019_+\|portal	phage portal protein	A0A1B1P863	Bacillus_phage	3.5e-140	54.3
WP_071182140.1\|29018_30134_+	hypothetical protein	A0A1B1P858	Bacillus_phage	3.9e-80	43.4
WP_155641728.1\|30148_30289_+	hypothetical protein	NA	NA	NA	NA
WP_061046980.1\|30367_31006_+	hypothetical protein	B3GW02	Streptococcus_phage	1.6e-17	43.2
WP_061046979.1\|31019_31922_+	hypothetical protein	A0A1B1P885	Bacillus_phage	5.1e-102	61.0
WP_071182139.1\|31854_32178_+	fibronectin type III domain-containing protein	Q0PDK9	Bacillus_phage	9.5e-27	72.6
WP_061046978.1\|32190_32454_+	hypothetical protein	A0A1B1P891	Bacillus_phage	1.7e-10	54.7
WP_061046977.1\|32469_32871_+	hypothetical protein	A0A1B1P889	Bacillus_phage	4.1e-19	41.8
WP_061046976.1\|32863_33202_+	hypothetical protein	I1TLE5	Bacillus_phage	1.8e-15	39.8
WP_048367517.1\|33198_33546_+	hypothetical protein	B5LPR8	Bacillus_virus	8.6e-26	47.0
WP_061046975.1\|33555_33945_+	hypothetical protein	NA	NA	NA	NA
WP_061046974.1\|33957_34419_+	hypothetical protein	I1TLE8	Bacillus_phage	6.1e-19	39.0
WP_076983588.1\|34378_34675_+	fibronectin type III domain-containing protein	Q0PDK9	Bacillus_phage	7.1e-21	61.7
WP_061046973.1\|34883_35171_+	fibronectin type III domain-containing protein	NA	NA	NA	NA
WP_061046972.1\|35228_35618_+	hypothetical protein	NA	NA	NA	NA
WP_061046971.1\|35625_36270_+	hypothetical protein	A0A1B1P868	Bacillus_phage	2.0e-23	41.4
WP_061046970.1\|36271_38920_+	hypothetical protein	A0A0S2SXL7	Bacillus_phage	3.2e-104	58.8
WP_071182138.1\|38916_39642_+\|tail	phage tail family protein	A0A1B1P894	Bacillus_phage	1.7e-28	37.9
WP_061046993.1\|39657_42297_+	hypothetical protein	Q5YA57	Bacillus_phage	2.9e-113	45.8
WP_048367533.1\|42283_42541_+	hypothetical protein	NA	NA	NA	NA
WP_048367534.1\|42610_43033_+\|holin	holin family protein	D6R405	Bacillus_phage	4.2e-51	78.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP030097

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP030098

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection