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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP029663 Staphylococcus aureus strain AR_0228 chromosome, complete genome 10 crisprs cas3,csa3,DinG,DEDDh,RT,WYL 7 4 8 2
NZ_CP029662 Staphylococcus aureus strain AR_0228 plasmid unnamed2, complete sequence 0 crisprs csa3 0 0 0 0
NZ_CP029661 Staphylococcus aureus strain AR_0228 plasmid unnamed1, complete sequence 0 crisprs csa3 0 0 0 0

Results visualization

1. NZ_CP029663
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP029663_1 425064-425165 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP029663_2 661559-661649 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP029663_3 821203-821281 Unclear NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP029663_4 826658-826927 Unclear NA
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP029663_5 869939-870020 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP029663_6 1211618-1211698 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP029663_7 2138136-2138217 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP029663_8 2267380-2267460 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP029663_9 2279701-2279786 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP029663_10 2387731-2387811 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP029663_4 4.1|826694|22|NZ_CP029663|CRT 826694-826715 22 NZ_CP029663.1 186967-186988 0 1.0
NZ_CP029663_4 4.1|826694|22|NZ_CP029663|CRT 826694-826715 22 NZ_CP029663.1 310031-310052 0 1.0
NZ_CP029663_4 4.1|826694|22|NZ_CP029663|CRT 826694-826715 22 NZ_CP029663.1 653304-653325 0 1.0
NZ_CP029663_4 4.1|826694|22|NZ_CP029663|CRT 826694-826715 22 NZ_CP029663.1 870012-870033 0 1.0
NZ_CP029663_4 4.1|826694|22|NZ_CP029663|CRT 826694-826715 22 NZ_CP029663.1 1231510-1231531 0 1.0
NZ_CP029663_4 4.1|826694|22|NZ_CP029663|CRT 826694-826715 22 NZ_CP029663.1 1429085-1429106 0 1.0
NZ_CP029663_4 4.1|826694|22|NZ_CP029663|CRT 826694-826715 22 NZ_CP029663.1 1519151-1519172 0 1.0
NZ_CP029663_4 4.1|826694|22|NZ_CP029663|CRT 826694-826715 22 NZ_CP029663.1 2037253-2037274 0 1.0
NZ_CP029663_4 4.3|826811|22|NZ_CP029663|CRT 826811-826832 22 NZ_CP029663.1 186967-186988 0 1.0
NZ_CP029663_4 4.3|826811|22|NZ_CP029663|CRT 826811-826832 22 NZ_CP029663.1 310031-310052 0 1.0
NZ_CP029663_4 4.3|826811|22|NZ_CP029663|CRT 826811-826832 22 NZ_CP029663.1 653304-653325 0 1.0
NZ_CP029663_4 4.3|826811|22|NZ_CP029663|CRT 826811-826832 22 NZ_CP029663.1 870012-870033 0 1.0
NZ_CP029663_4 4.3|826811|22|NZ_CP029663|CRT 826811-826832 22 NZ_CP029663.1 1231510-1231531 0 1.0
NZ_CP029663_4 4.3|826811|22|NZ_CP029663|CRT 826811-826832 22 NZ_CP029663.1 1429085-1429106 0 1.0
NZ_CP029663_4 4.3|826811|22|NZ_CP029663|CRT 826811-826832 22 NZ_CP029663.1 1519151-1519172 0 1.0
NZ_CP029663_4 4.3|826811|22|NZ_CP029663|CRT 826811-826832 22 NZ_CP029663.1 2037253-2037274 0 1.0
NZ_CP029663_7 7.1|2138160|34|NZ_CP029663|CRISPRCasFinder 2138160-2138193 34 NZ_CP029663.1 821202-821235 0 1.0
NZ_CP029663_7 7.1|2138160|34|NZ_CP029663|CRISPRCasFinder 2138160-2138193 34 NZ_CP029663.1 1730845-1730878 0 1.0
NZ_CP029663_4 4.1|826694|22|NZ_CP029663|CRT 826694-826715 22 NZ_CP029663.1 1211782-1211803 1 0.955
NZ_CP029663_4 4.1|826694|22|NZ_CP029663|CRT 826694-826715 22 NZ_CP029663.1 1923762-1923783 1 0.955
NZ_CP029663_4 4.2|826752|23|NZ_CP029663|CRT 826752-826774 23 NZ_CP029663.1 1246044-1246066 1 0.957
NZ_CP029663_4 4.2|826752|23|NZ_CP029663|CRT 826752-826774 23 NZ_CP029663.1 1519034-1519056 1 0.957
NZ_CP029663_4 4.2|826752|23|NZ_CP029663|CRT 826752-826774 23 NZ_CP029663.1 2037311-2037333 1 0.957
NZ_CP029663_4 4.2|826752|23|NZ_CP029663|CRT 826752-826774 23 NZ_CP029663.1 2376902-2376924 1 0.957
NZ_CP029663_4 4.3|826811|22|NZ_CP029663|CRT 826811-826832 22 NZ_CP029663.1 1211782-1211803 1 0.955
NZ_CP029663_4 4.3|826811|22|NZ_CP029663|CRT 826811-826832 22 NZ_CP029663.1 1923762-1923783 1 0.955
NZ_CP029663_4 4.4|826869|23|NZ_CP029663|CRT 826869-826891 23 NZ_CP029663.1 1246044-1246066 1 0.957
NZ_CP029663_4 4.4|826869|23|NZ_CP029663|CRT 826869-826891 23 NZ_CP029663.1 1519034-1519056 1 0.957
NZ_CP029663_4 4.4|826869|23|NZ_CP029663|CRT 826869-826891 23 NZ_CP029663.1 2037311-2037333 1 0.957
NZ_CP029663_4 4.4|826869|23|NZ_CP029663|CRT 826869-826891 23 NZ_CP029663.1 2376902-2376924 1 0.957
NZ_CP029663_5 5.1|869963|34|NZ_CP029663|CRISPRCasFinder 869963-869996 34 NZ_CP029663.1 1519043-1519076 1 0.971
NZ_CP029663_7 7.1|2138160|34|NZ_CP029663|CRISPRCasFinder 2138160-2138193 34 NZ_CP029663.1 1119523-1119556 1 0.971
NZ_CP029663_10 10.1|2387756|31|NZ_CP029663|CRISPRCasFinder 2387756-2387786 31 NZ_CP029663.1 833946-833976 1 0.968
NZ_CP029663_10 10.1|2387756|31|NZ_CP029663|CRISPRCasFinder 2387756-2387786 31 NZ_CP029663.1 834002-834032 1 0.968
NZ_CP029663_4 4.2|826752|23|NZ_CP029663|CRT 826752-826774 23 NZ_CP029663.1 1429201-1429223 2 0.913
NZ_CP029663_4 4.2|826752|23|NZ_CP029663|CRT 826752-826774 23 NZ_CP029663.1 2138217-2138239 2 0.913
NZ_CP029663_4 4.4|826869|23|NZ_CP029663|CRT 826869-826891 23 NZ_CP029663.1 1429201-1429223 2 0.913
NZ_CP029663_4 4.4|826869|23|NZ_CP029663|CRT 826869-826891 23 NZ_CP029663.1 2138217-2138239 2 0.913
NZ_CP029663_7 7.1|2138160|34|NZ_CP029663|CRISPRCasFinder 2138160-2138193 34 NZ_CP029663.1 1514669-1514702 2 0.941
NZ_CP029663_10 10.1|2387756|31|NZ_CP029663|CRISPRCasFinder 2387756-2387786 31 NZ_CP029663.1 88324-88354 2 0.935
NZ_CP029663_10 10.1|2387756|31|NZ_CP029663|CRISPRCasFinder 2387756-2387786 31 NZ_CP029663.1 386329-386359 2 0.935
NZ_CP029663_10 10.1|2387756|31|NZ_CP029663|CRISPRCasFinder 2387756-2387786 31 NZ_CP029663.1 653359-653389 2 0.935
NZ_CP029663_10 10.1|2387756|31|NZ_CP029663|CRISPRCasFinder 2387756-2387786 31 NZ_CP029663.1 834058-834088 2 0.935
NZ_CP029663_10 10.1|2387756|31|NZ_CP029663|CRISPRCasFinder 2387756-2387786 31 NZ_CP029663.1 870275-870305 2 0.935
NZ_CP029663_10 10.1|2387756|31|NZ_CP029663|CRISPRCasFinder 2387756-2387786 31 NZ_CP029663.1 1231447-1231477 2 0.935
NZ_CP029663_10 10.1|2387756|31|NZ_CP029663|CRISPRCasFinder 2387756-2387786 31 NZ_CP029663.1 1429024-1429054 2 0.935
NZ_CP029663_10 10.1|2387756|31|NZ_CP029663|CRISPRCasFinder 2387756-2387786 31 NZ_CP029663.1 1429140-1429170 2 0.935
NZ_CP029663_10 10.1|2387756|31|NZ_CP029663|CRISPRCasFinder 2387756-2387786 31 NZ_CP029663.1 1519087-1519117 2 0.935
NZ_CP029663_10 10.1|2387756|31|NZ_CP029663|CRISPRCasFinder 2387756-2387786 31 NZ_CP029663.1 1725250-1725280 2 0.935
NZ_CP029663_10 10.1|2387756|31|NZ_CP029663|CRISPRCasFinder 2387756-2387786 31 NZ_CP029663.1 1827774-1827804 2 0.935
NZ_CP029663_10 10.1|2387756|31|NZ_CP029663|CRISPRCasFinder 2387756-2387786 31 NZ_CP029663.1 2035905-2035935 2 0.935
NZ_CP029663_10 10.1|2387756|31|NZ_CP029663|CRISPRCasFinder 2387756-2387786 31 NZ_CP029663.1 2376955-2376985 2 0.935
NZ_CP029663_10 10.1|2387756|31|NZ_CP029663|CRISPRCasFinder 2387756-2387786 31 NZ_CP029663.1 2552538-2552568 2 0.935

1. spacer 4.1|826694|22|NZ_CP029663|CRT matches to position: 186967-186988, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

2. spacer 4.1|826694|22|NZ_CP029663|CRT matches to position: 310031-310052, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

3. spacer 4.1|826694|22|NZ_CP029663|CRT matches to position: 653304-653325, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

4. spacer 4.1|826694|22|NZ_CP029663|CRT matches to position: 870012-870033, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

5. spacer 4.1|826694|22|NZ_CP029663|CRT matches to position: 1231510-1231531, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

6. spacer 4.1|826694|22|NZ_CP029663|CRT matches to position: 1429085-1429106, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

7. spacer 4.1|826694|22|NZ_CP029663|CRT matches to position: 1519151-1519172, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

8. spacer 4.1|826694|22|NZ_CP029663|CRT matches to position: 2037253-2037274, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

9. spacer 4.3|826811|22|NZ_CP029663|CRT matches to position: 186967-186988, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

10. spacer 4.3|826811|22|NZ_CP029663|CRT matches to position: 310031-310052, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

11. spacer 4.3|826811|22|NZ_CP029663|CRT matches to position: 653304-653325, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

12. spacer 4.3|826811|22|NZ_CP029663|CRT matches to position: 870012-870033, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

13. spacer 4.3|826811|22|NZ_CP029663|CRT matches to position: 1231510-1231531, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

14. spacer 4.3|826811|22|NZ_CP029663|CRT matches to position: 1429085-1429106, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

15. spacer 4.3|826811|22|NZ_CP029663|CRT matches to position: 1519151-1519172, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

16. spacer 4.3|826811|22|NZ_CP029663|CRT matches to position: 2037253-2037274, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

17. spacer 7.1|2138160|34|NZ_CP029663|CRISPRCasFinder matches to position: 821202-821235, mismatch: 0, identity: 1.0

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctctgtgttgg	Protospacer
**********************************

18. spacer 7.1|2138160|34|NZ_CP029663|CRISPRCasFinder matches to position: 1730845-1730878, mismatch: 0, identity: 1.0

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctctgtgttgg	Protospacer
**********************************

19. spacer 4.1|826694|22|NZ_CP029663|CRT matches to position: 1211782-1211803, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttctttacgaaa	Protospacer
**************** *****

20. spacer 4.1|826694|22|NZ_CP029663|CRT matches to position: 1923762-1923783, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttagaaa	Protospacer
***************** ****

21. spacer 4.2|826752|23|NZ_CP029663|CRT matches to position: 1246044-1246066, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

22. spacer 4.2|826752|23|NZ_CP029663|CRT matches to position: 1519034-1519056, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

23. spacer 4.2|826752|23|NZ_CP029663|CRT matches to position: 2037311-2037333, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

24. spacer 4.2|826752|23|NZ_CP029663|CRT matches to position: 2376902-2376924, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

25. spacer 4.3|826811|22|NZ_CP029663|CRT matches to position: 1211782-1211803, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttctttacgaaa	Protospacer
**************** *****

26. spacer 4.3|826811|22|NZ_CP029663|CRT matches to position: 1923762-1923783, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttagaaa	Protospacer
***************** ****

27. spacer 4.4|826869|23|NZ_CP029663|CRT matches to position: 1246044-1246066, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

28. spacer 4.4|826869|23|NZ_CP029663|CRT matches to position: 1519034-1519056, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

29. spacer 4.4|826869|23|NZ_CP029663|CRT matches to position: 2037311-2037333, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

30. spacer 4.4|826869|23|NZ_CP029663|CRT matches to position: 2376902-2376924, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

31. spacer 5.1|869963|34|NZ_CP029663|CRISPRCasFinder matches to position: 1519043-1519076, mismatch: 1, identity: 0.971

attgagaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
****.*****************************

32. spacer 7.1|2138160|34|NZ_CP029663|CRISPRCasFinder matches to position: 1119523-1119556, mismatch: 1, identity: 0.971

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctttgtgttgg	Protospacer
*************************.********

33. spacer 10.1|2387756|31|NZ_CP029663|CRISPRCasFinder matches to position: 833946-833976, mismatch: 1, identity: 0.968

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
***********************.*******

34. spacer 10.1|2387756|31|NZ_CP029663|CRISPRCasFinder matches to position: 834002-834032, mismatch: 1, identity: 0.968

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
***********************.*******

35. spacer 4.2|826752|23|NZ_CP029663|CRT matches to position: 1429201-1429223, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatacaat	Protospacer
**************.*** ****

36. spacer 4.2|826752|23|NZ_CP029663|CRT matches to position: 2138217-2138239, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgttgaaattgggaatccaat	Protospacer
***** ********.********

37. spacer 4.4|826869|23|NZ_CP029663|CRT matches to position: 1429201-1429223, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatacaat	Protospacer
**************.*** ****

38. spacer 4.4|826869|23|NZ_CP029663|CRT matches to position: 2138217-2138239, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgttgaaattgggaatccaat	Protospacer
***** ********.********

39. spacer 7.1|2138160|34|NZ_CP029663|CRISPRCasFinder matches to position: 1514669-1514702, mismatch: 2, identity: 0.941

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtggaatttcttatcgaaattctctgtgttgg	Protospacer
****.********* *******************

40. spacer 10.1|2387756|31|NZ_CP029663|CRISPRCasFinder matches to position: 88324-88354, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

41. spacer 10.1|2387756|31|NZ_CP029663|CRISPRCasFinder matches to position: 386329-386359, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

42. spacer 10.1|2387756|31|NZ_CP029663|CRISPRCasFinder matches to position: 653359-653389, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

43. spacer 10.1|2387756|31|NZ_CP029663|CRISPRCasFinder matches to position: 834058-834088, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

44. spacer 10.1|2387756|31|NZ_CP029663|CRISPRCasFinder matches to position: 870275-870305, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

45. spacer 10.1|2387756|31|NZ_CP029663|CRISPRCasFinder matches to position: 1231447-1231477, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

46. spacer 10.1|2387756|31|NZ_CP029663|CRISPRCasFinder matches to position: 1429024-1429054, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

47. spacer 10.1|2387756|31|NZ_CP029663|CRISPRCasFinder matches to position: 1429140-1429170, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

48. spacer 10.1|2387756|31|NZ_CP029663|CRISPRCasFinder matches to position: 1519087-1519117, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

49. spacer 10.1|2387756|31|NZ_CP029663|CRISPRCasFinder matches to position: 1725250-1725280, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

50. spacer 10.1|2387756|31|NZ_CP029663|CRISPRCasFinder matches to position: 1827774-1827804, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

51. spacer 10.1|2387756|31|NZ_CP029663|CRISPRCasFinder matches to position: 2035905-2035935, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

52. spacer 10.1|2387756|31|NZ_CP029663|CRISPRCasFinder matches to position: 2376955-2376985, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

53. spacer 10.1|2387756|31|NZ_CP029663|CRISPRCasFinder matches to position: 2552538-2552568, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP029663_4 4.2|826752|23|NZ_CP029663|CRT 826752-826774 23 AP014226 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, *** SEQUENCING IN PROGRESS *** 28490-28512 3 0.87
NZ_CP029663_4 4.2|826752|23|NZ_CP029663|CRT 826752-826774 23 AP014225 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, *** SEQUENCING IN PROGRESS *** 24653-24675 3 0.87
NZ_CP029663_4 4.4|826869|23|NZ_CP029663|CRT 826869-826891 23 AP014226 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, *** SEQUENCING IN PROGRESS *** 28490-28512 3 0.87
NZ_CP029663_4 4.4|826869|23|NZ_CP029663|CRT 826869-826891 23 AP014225 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, *** SEQUENCING IN PROGRESS *** 24653-24675 3 0.87
NZ_CP029663_2 2.1|661589|31|NZ_CP029663|CRISPRCasFinder 661589-661619 31 NZ_LR135334 Enterococcus faecium isolate E7471 plasmid 4 57039-57069 8 0.742
NZ_CP029663_2 2.1|661589|31|NZ_CP029663|CRISPRCasFinder 661589-661619 31 NZ_LR135205 Enterococcus faecium isolate E7171 plasmid 3 1277-1307 8 0.742
NZ_CP029663_9 9.1|2279727|34|NZ_CP029663|CRISPRCasFinder 2279727-2279760 34 JN882286 Cronobacter phage vB_CsaP_GAP52, complete genome 23034-23067 8 0.765
NZ_CP029663_9 9.1|2279727|34|NZ_CP029663|CRISPRCasFinder 2279727-2279760 34 CP030544 Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence 7567-7600 8 0.765

1. spacer 4.2|826752|23|NZ_CP029663|CRT matches to AP014226 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

2. spacer 4.2|826752|23|NZ_CP029663|CRT matches to AP014225 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

3. spacer 4.4|826869|23|NZ_CP029663|CRT matches to AP014226 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

4. spacer 4.4|826869|23|NZ_CP029663|CRT matches to AP014225 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

5. spacer 2.1|661589|31|NZ_CP029663|CRISPRCasFinder matches to NZ_LR135334 (Enterococcus faecium isolate E7471 plasmid 4) position: , mismatch: 8, identity: 0.742

gtgaagaggaacgcagttggatgctaaggca	CRISPR spacer
ctttagaagaacgcagtttgatgctaattta	Protospacer
 *  ***.********** ********  .*

6. spacer 2.1|661589|31|NZ_CP029663|CRISPRCasFinder matches to NZ_LR135205 (Enterococcus faecium isolate E7171 plasmid 3) position: , mismatch: 8, identity: 0.742

gtgaagaggaacgcagttggatgctaaggca	CRISPR spacer
ctttagaagaacgcagtttgatgctaattta	Protospacer
 *  ***.********** ********  .*

7. spacer 9.1|2279727|34|NZ_CP029663|CRISPRCasFinder matches to JN882286 (Cronobacter phage vB_CsaP_GAP52, complete genome) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgcatatctttagctttatagcttttatatgct	Protospacer
******************** *.** .*  **  

8. spacer 9.1|2279727|34|NZ_CP029663|CRISPRCasFinder matches to CP030544 (Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgaataactttagctttattgttataaacagta	Protospacer
*** *** ****************   *** * .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 759793 : 767614 10 Hokovirus(16.67%) NA NA
DBSCAN-SWA_2 779585 : 792901 13 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_3 878341 : 925527 57 Staphylococcus_phage(67.27%) terminase,integrase,plate,holin attL 871801:871816|attR 927070:927085
DBSCAN-SWA_4 995339 : 1057549 59 Staphylococcus_phage(95.65%) tRNA,protease NA
DBSCAN-SWA_5 1187486 : 1196529 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_6 1817820 : 1826293 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_7 1982929 : 2025876 60 Staphylococcus_phage(66.67%) capsid,head,terminase,integrase,holin,portal,tail attL 2006226:2006241|attR 2028592:2028607
DBSCAN-SWA_8 2050150 : 2143100 113 Staphylococcus_phage(84.62%) head,capsid,terminase,integrase,holin,tRNA,portal,protease,tail attL 2046587:2046611|attR 2145386:2145410
Click the colored protein region to show detailed information
Click the colored protein region to show detailed information
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_CP029663.1|WP_000681968.1|2085909_2086086_-|hypothetical-protein 2085909_2086086_- 58 aa aa NA NA NA 2050150-2143100 yes
NZ_CP029663.1|WP_000990056.1|2086328_2086427_-|hypothetical-protein 2086328_2086427_- 32 aa aa NA NA NA 2050150-2143100 yes