CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP029686	Lacticaseibacillus paracasei strain Lpc10 chromosome, complete genome	3 crisprs	DEDDh,cas3,csa3,WYL,DinG,cas9,cas1,cas2,csn2,RT	0	9	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP029686_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029686_1

1222836-1222980

Orphan

Consensus_repeat	Method
TTTCGAAACGCGCAAACAGGCGCAGAAACCTGCTCATAAGGACCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029686_1

>merge|NZ_CP029686|1|1222836-1222980|CRISPRCasFinder
TTTCGAAACGCGCAAACAGGCGCAGAAACCTGCTCATAAGGACCCCAAGCCTAAATGCCAAAGCCCGGCCATTTAGGCTTGGGGCCGCTTATGCTCTACTTTCGAAACGCGCAAACAGGCGCAGAAACCTGCTCATAAGGACCCC

>NZ_CP029686|1|1|1222836-1222980|CRISPRCasFinder
TTTCGAAACGCGCAAACAGGCGCAGAAACCTGCTCATAAGGACCCC	AAGCCTAAATGCCAAAGCCCGGCCATTTAGGCTTGGGGCCGCTTATGCTCTAC
TTTCGAAACGCGCAAACAGGCGCAGAAACCTGCTCATAAGGACCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029686.1\|WP_003563026.1\|1220845_1221604_-\|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
NZ_CP029686.1\|WP_003563024.1\|1222048_1222735_+\|hydrolase	unknown	unknown	gnl\|CDD\|270620
NZ_CP029686.1\|WP_003568836.1\|1232000_1233353_-\|gluconate-permease	unknown	unknown	gnl\|CDD\|129873
NZ_CP029686.1\|WP_003568838.1\|1218775_1219108_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029686.1\|WP_004562160.1\|1228025_1228907_+\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224995
NZ_CP029686.1\|WP_003563013.1\|1228903_1229755_+\|metallophosphoesterase-family-protein	unknown	unknown	gnl\|CDD\|223695
NZ_CP029686.1\|WP_003563040.1\|1214942_1216490_-\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223562
NZ_CP029686.1\|WP_003563017.1\|1226229_1228029_+\|oligoendopeptidase-F	unknown	unknown	gnl\|CDD\|341071
NZ_CP029686.1\|WP_003563011.1\|1229822_1230620_-\|metal-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224033
NZ_CP029686.1\|WP_003563021.1\|1223476_1224856_+\|branched-chain-amino-acid-transport-system-II-carrier-protein	unknown	unknown	gnl\|CDD\|283235
NZ_CP029686.1\|WP_003563028.1\|1219978_1220761_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|366154
NZ_CP029686.1\|WP_003563009.1\|1230616_1231336_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213202
NZ_CP029686.1\|WP_110344355.1\|1214042_1214783_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NZ_CP029686.1\|WP_003563002.1\|1233537_1235106_-\|gluconokinase	unknown	unknown	gnl\|CDD\|130381
NZ_CP029686.1\|WP_003563019.1\|1225006_1226101_-\|LCP-family-protein	unknown	unknown	gnl\|CDD\|181811
NZ_CP029686.1\|WP_003563036.1\|1217885_1218485_+\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|274044
NZ_CP029686.1\|WP_003563030.1\|1219216_1219960_-\|DUF975-family-protein	unknown	unknown	gnl\|CDD\|227810
NZ_CP029686.1\|WP_003563007.1\|1231409_1231754_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029686.1\|WP_003568841.1\|1208362_1208677_-\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|239245
NZ_CP029686.1\|WP_003563038.1\|1216869_1217808_+\|ADP-ribosylglycohydrolase-family-protein	unknown	unknown	gnl\|CDD\|377122

Protein	Function_ID	Function_description	E-value
NZ_CP029686.1\|WP_003563026.1\|1220845_1221604_-\|DeoR/GlpR-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	4.33431e-57
NZ_CP029686.1\|WP_003563024.1\|1222048_1222735_+\|hydrolase	gnl\|CDD\|270620	cd14667, 3D_containing_proteins, Non-mltA associated 3D domain containing proteins, named for 3 conserved aspartate residues. This family contains the 3D domain, named for its 3 conserved aspartates, including similar uncharacterized proteins. These proteins contain the critical active site aspartate of mltA-like lytic transglycosylases where the 3D domain forms a larger domain with the N-terminal region. This domain is also found in conjunction with numerous other domains such as the Escherichia coli MltA, a membrane-bound lytic transglycosylase comprised of 2 domains separated by a large groove, where the peptidoglycan strand binds. Domain A is made up of an N-terminal and a C-terminal portion, corresponding to the 3D domain and Domain B is inserted within the linear sequence of domain A. MltA is distinct from other bacterial LTs, which are similar to each other. Escherichia coli peptidoglycan lytic transglycosylase (LT) initiates cell wall recycling in response to damage, during bacterial fission, and cleaves peptidoglycan (PG) to create functional spaces in its wall. PG chains (also known as murein), the major components of the bacterial cell wall, are comprised of alternating beta-1-4-linked N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), and lytic transglycosylases cleave this beta-1-4 bond.	2.76198e-08
NZ_CP029686.1\|WP_003568836.1\|1232000_1233353_-\|gluconate-permease	gnl\|CDD\|129873	TIGR00791, Gluconate_permease, gluconate transporter. This family includes known gluconate transporters of E. coli and Bacillus species as well as an idonate transporter from E. coli. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	4.50632e-167
NZ_CP029686.1\|WP_004562160.1\|1228025_1228907_+\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|224995	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism].	5.68511e-110
NZ_CP029686.1\|WP_003563013.1\|1228903_1229755_+\|metallophosphoesterase-family-protein	gnl\|CDD\|223695	COG0622, COG0622, Predicted phosphoesterase [General function prediction only].	2.75673e-13
NZ_CP029686.1\|WP_003563040.1\|1214942_1216490_-\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	1.45525e-169
NZ_CP029686.1\|WP_003563017.1\|1226229_1228029_+\|oligoendopeptidase-F	gnl\|CDD\|341071	cd09608, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF). Peptidase family M3B oligopeptidase F (PepF; Pz-peptidase B; EC 3.4.24.-) is mostly bacterial and includes oligoendopeptidase F from Lactococcus lactis. This enzyme hydrolyzes peptides containing between 7 and 17 amino acids with fairly broad specificity. The PepF gene is duplicated in L. lactis on the plasmid that bears it, while a shortened second copy is found in Bacillus subtilis. Most bacterial PepFs are cytoplasmic endopeptidases; however, the Bacillus amyloliquefaciens PepF oligopeptidase is a secreted protein and may facilitate the process of sporulation. Specifically, the yjbG gene encoding the homolog of the PepF1 and PepF2 oligoendopeptidases of Lactococcus lactis has been identified in Bacillus subtilis as an inhibitor of sporulation initiation when over-expressed from a multicopy plasmid. This PepF family includes Streptococcus agalactiae PepB, a group B streptococcal oligopeptidase which has been shown to degrade a variety of bioactive peptides as well as the synthetic collagen-like substrate N-(3-[2-furyl]acryloyl)-Leu-Gly- Pro-Ala in vitro.	0
NZ_CP029686.1\|WP_003563011.1\|1229822_1230620_-\|metal-ABC-transporter-permease	gnl\|CDD\|224033	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism].	1.10945e-41
NZ_CP029686.1\|WP_003563021.1\|1223476_1224856_+\|branched-chain-amino-acid-transport-system-II-carrier-protein	gnl\|CDD\|283235	pfam05525, Branch_AA_trans, Branched-chain amino acid transport protein. This family consists of several bacterial branched-chain amino acid transport proteins which are responsible for the transport of leucine, isoleucine and valine via proton motive force.	7.36575e-108
NZ_CP029686.1\|WP_003563036.1\|1217885_1218485_+\|signal-peptidase-I	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	6.78672e-47
NZ_CP029686.1\|WP_003563009.1\|1230616_1231336_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213202	cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.	5.1545e-66
NZ_CP029686.1\|WP_110344355.1\|1214042_1214783_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	2.69233e-07
NZ_CP029686.1\|WP_003563002.1\|1233537_1235106_-\|gluconokinase	gnl\|CDD\|130381	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway. [Energy metabolism, Sugars].	0
NZ_CP029686.1\|WP_003563019.1\|1225006_1226101_-\|LCP-family-protein	gnl\|CDD\|181811	PRK09379, PRK09379, LytR family transcriptional regulator.	1.41929e-91
NZ_CP029686.1\|WP_003563028.1\|1219978_1220761_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	5.11135e-36
NZ_CP029686.1\|WP_003563030.1\|1219216_1219960_-\|DUF975-family-protein	gnl\|CDD\|227810	COG5523, COG5523, Predicted integral membrane protein [Function unknown].	5.48812e-07
NZ_CP029686.1\|WP_003568841.1\|1208362_1208677_-\|thioredoxin-family-protein	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	2.32335e-29
NZ_CP029686.1\|WP_003563038.1\|1216869_1217808_+\|ADP-ribosylglycohydrolase-family-protein	gnl\|CDD\|377122	pfam03747, ADP_ribosyl_GH, ADP-ribosylglycohydrolase. This family includes enzymes that ADP-ribosylations, for example ADP-ribosylarginine hydrolase EC:3.2.2.19 cleaves ADP-ribose-L-arginine. The family also includes dinitrogenase reductase activating glycohydrolase. Most surprisingly the family also includes jellyfish crystallins, these proteins appear to have lost the presumed active site residues.	7.47758e-32

>NZ_CP029686.1|WP_003563024.1|1222048_1222735_+|hydrolase
MASNHSQKVEAIADHADADNDSSHVNAKSIVLSNEAKVEQANAHSLINPKKEITFTVGTNDIAEAAHQIADQKAAAAKAAEEQAAAEQAAAEQAAAEQAAAEKAQQEAQQAAQNAAAASAASAASASSSAATTASTETTTNKGTFKLSFYDPSVLGSGLGYGGVAANLSVFPKGTRLKITLSDGTVWYRTVNDTGSFAAGNPNQLDVAMPNSQIPSAGVLTATVEVVG
>NZ_CP029686.1|WP_003563026.1|1220845_1221604_-|DeoR/GlpR-transcriptional-regulator
MAMYREKRFEEIKKLLAARSELSIEDIMKAVGVSRDTARRDIVALDAQGVARRTRGGLVSLSFGHTIPSYSARLKRFSTQKTKMAKSALTLIKPGGVYFIDDSTTLLKLSQSIRQPVTVYTHSLDNAIALSVEERVNLHLFGGKLDHHARFFFEPTMLETLRRIAFDAAFIGATAIAEDGVYFSYMEDAQVKQAAALSARRVVVVSETEKFQIEAPYRGLELGQITTLITDKKLSQTHKQWFAPQTQFLLGD
>NZ_CP029686.1|WP_003563028.1|1219978_1220761_-|glycosyltransferase-family-2-protein
MVKPLVTIIVPVYNLEAYVAHGLKSLIEQTYSHLQIIVIDDASKDHSPQIIAHFAELDSRIQPILKQVNHGVSAARNSGLALAKGDLVAFMDGDDWYEPDFIAHAVDMMARGWDLIAMPFYRDDPDPRPVHEALRKPKQLTREGLIRQMLHPIGYIRGYLWNKVFRRDVIEQVRLRFDESMTIMEDELFTATYVMATHRFLYTGHPAYHHVVRRDSATQSLGIIGAVPQQLYALWRIHQVLRVARRTEKVTKKEAIKIEH
>NZ_CP029686.1|WP_003563030.1|1219216_1219960_-|DUF975-family-protein
MTEHLMTYRQLKQKAKGQLKEGTNRRDLMLAYLLPSLIQAAVAIITYLMVFALIQKFGIDKALTDPDGFQNYLQSGNRTGSMNTIQSLVNTMLIQGVNFGVLDLVRRKERVQPLHALLGLFNGQWFWGAISLWIFMYFLTLMGLSFFLIPGILLALGWRQAFWVFKDGHETNQRFSSISALIGSWRLMRGFKGDLLGLYVSMIGWYLLENITFHLFDWVINPYLQLVHANYYENRRAYKIAAQAAQS
>NZ_CP029686.1|WP_003568838.1|1218775_1219108_-|hypothetical-protein
METEAYMTLAEVKARQAALKDKVPLDQAIAENIQNWAQWLLDEGFEGSYFTAKIDGDTINITDLDGHPAASISTDAPSYVEAFKDSDRMTMMAIQTKLRRLIDRQVLKSQ
>NZ_CP029686.1|WP_003563036.1|1217885_1218485_+|signal-peptidase-I
MKNNSHSTLKTVLEFLVLFAVIFFASQLLMRYVLSKDVVQGTSMQPTLENGDRLYSIRVKKPKRNDIVVINAPDRPGSLYIKRVIGMPGDTVSSKDNQLSVNGKKIAEPYLNKKFATDEINKWASQQGLDASTIKFTNDFNIKTLSSTKSAKVPAGKYFVMGDNRLVSHDSRDFGFVDKSKIQSVVVWRYWPLNQMKLY
>NZ_CP029686.1|WP_003563038.1|1216869_1217808_+|ADP-ribosylglycohydrolase-family-protein
MGIMESRLIHGTVGFAIGDALGLPVKGQNAAELTAAPVTTMKGYGTFNQPAGTYSDETGLALAGLDALQHGFDEQALIKAYQAWFTAGKYAPYGKRSPDIWPSIETALKTGQSVASPKEPGALIRILPFAFFAYQTFDTSLFQKAEGVKVLETFVHITNQDAENLVAAGIYMQIAVELLGATPDLPSAIATGTDKAGSYFGTTQPYQPIFEAFQAALADDKWPDESATDPISLLARTLKALQSKPDYHDAVLQTVNQGGATDTTGALVGGLAGLAYGYTSLPHRWCLMLAEYAQIVDLCRQAENSGLFPKYD
>NZ_CP029686.1|WP_003563040.1|1214942_1216490_-|ABC-F-family-ATP-binding-cassette-domain-containing-protein
MSVLTVTGLSQRFLDKVLYQDASFQVNIEDHLGVIGQNGVGKSTLIKILTGTLTPDAGKIVWQKHLHVGYLDQYANLVPGQTVIEFLRTAFSDLYRKEAKMNQIYADYANHPDDDLLAKAGELQQELEAGDFYDLETTIQTVAEGLGITAMGMDHPVEALSGGQRSKLILAKLLLEKPDMLLLDEPTNYLDVSHIAWLTDWLQNFEGAFIVISHDFDFLENVTNAVLDIEFGQITKYTGTLKQAMRQKEADHETYLKAFAKQQETIKKTEAFIRKFKAGTRATMAKSREKQLARMDKLTPPGTRSKAHLAFPYAPVNRQILVDVNDLVVGYDKPLLQPMNFSVAKDQIIAFEGFNGVGKSTLLKTLLGLLPAISGNVEIADNVVFGYYEQELHWDQPKQSPVQYLEQRFPALTQKTVRQVLSRTALTSEEANNPLTMLSGGEQAKVKLADLMLQTTNILVMDEPTNHLDDDTKNALREGLQQYPGAVLLVSHEAGFYDSSWVDTVVNVEQLQVKA
>NZ_CP029686.1|WP_110344355.1|1214042_1214783_+|class-I-SAM-dependent-methyltransferase
MTEVQAFWNAFAPDYAAAEQASRLPIAHDVIAWLRSTQLLPAHSAVDLAAGTGRYAVQMMPWVQELTLIDWSSAMLAFAKERMHQQADTKAQFIVADWRKLHKPLNADMLFVSQLPTLKPQDLKMLMNWANQTVVLNFQTAQSDALLEQAASLLGLQLPPVYQADPARMTSFKVWLTAQRIPFQSHSLTYEIEEQTTLSDLLPDLATPIGLKTAASLAKTITGHENTHVQVTDRLTYTYTQLVWHV
>NZ_CP029686.1|WP_003568841.1|1208362_1208677_-|thioredoxin-family-protein
MAIEATKDNLKALTAEGTVVVDFWAPWCGPCKVLDPMLTALEQELPALKVVRYNVEKDHTLPSTMGIMSVPTLVIYQQGEAREKVTGVYPKDKLKRYFEQKLEA
>NZ_CP029686.1|WP_003563021.1|1223476_1224856_+|branched-chain-amino-acid-transport-system-II-carrier-protein
MSPQPTLTKRQYLTLGSLLFGMFFGAGNLIFPIHMGQLAGSAWLPAAIGFLLSAVLLPLLSIMAISLTRASSMYDLARPAGHSFALFFLLATHASLGLLIASPRTATVTYSIGIAPFLGKDQQQIGLLIFSFIFFLTTFLLARNESKITTYIGKLLNPLLLILLAVIFFWALVIKGDIRAISFTSSPKLMSSNLINGFLQGYNTMDALAGLGFGVTIITALKLMGLHQASTRAKAVAKVGSLAMGLEALIYMLLILLGAISLGFSKLTANGGTAFNQIMTHYTGLIGTALLGAMTLLACLTTAIGLVTSFSQDLGHRFPKLGYHFFLPMTTIGAFLIANFGLDQIIAYSTPILMLLYPLAIALIMLGLMHPWIGKNTRIYKTTVAFTMIPALLDAIHALPAGLAQLPIFSSIQQFATTYIPWFGIGMDFVPFLLIGFLTGFIAAKLSGHKLAPDLPDPD
>NZ_CP029686.1|WP_003563019.1|1225006_1226101_-|LCP-family-protein
MDKQPDSDQQTLKRKPKRRHPILRALAIIALVALFLAGGYAARFYSQAKKAVAKTYDPVSTKAVSSDLDGKKPISILLLGTDTGAFGRKDTGRSDTMMLVTINPKEKKTTMTSIPRDTLAEMVGTGSDSPTYEKINAAYAYGQSDAAIKTVEKLLDVPINYYVTVNMAGLSKIVDAVGGVDVNVPFSWTDWNTGGQTFKKGKAHLDGGMALAYARMRDEDPEGDYGRQKRQQEVINQIVKHLLSVKSLTNYQKVMDSLSSSMRTNLTFDDMMAIAQNYRASATTIDRQQLKGIGVYIDEAAYQVMTTETLQKMSNELRGQLGLESKTLSNFNTQQNEINNANGFDWTANNPVYTVSLDGATTGP
>NZ_CP029686.1|WP_003563017.1|1226229_1228029_+|oligoendopeptidase-F
MQHLPARAEVPTELTWDLTTIYPDDKAWQVDFEAVRQQAKEAAALKGTLGKSPEALVAGIKAVLAVFRRFEKVYVYSSLKSDQDTGNAAYQAMNAKAESLAADLASQLAFMDPEILAIPADQLTAWRDTESLKPYGHFIDAITVNRQHVLTTAAESLIASAGDALNASHATFNVLNNSDLQFGFVENEDGETVQLSNGLYGQLIRSTNRKLRKDAFEALLRAYESLKNTFAQTLSGQIKAHNFNALAHHYPDARAAAMASNHIPESVYTTLLDQVNAHLPLLHRYIALRKKILNVDQLHMYDIYTPLTGRPPLSFTLDQAKDEALKALAPLGNDYLDHMREIFNNRYIDVVENKGKRSGAYSGGAYDTNPFILLNWHDAVDELYTLVHETGHSVHSWYTRHHQPYVYGDYPIFVAEIASTTNENLLTDYFLKNTNDPKVRAYILNYYLDGFKGTVFRQAQFADFEHWIHQQDQHGEPLTATSMSSYYADLNARYYGPDVARDPEIAFEWARIPHFYYNYYVYQYATGFAAASTLAAGISGGEPEAVSRYIGYLKSGSSKYAIDTMKAAGVDMTKPDYLEAAFSLFEQRLAELEKILQKG
>NZ_CP029686.1|WP_004562160.1|1228025_1228907_+|NAD(P)-dependent-oxidoreductase
MSSVKLGFIGTGVMGTGIIKNFLKNGQEVVVFNRTQAHAQPVIEAGATWAESPHAVAAQCDIVLSMVGFPQDVETIYFGSDGILAGARKGALLIDMTTSTPTLAKKIAAKAAEKGLQAVDAPVSGGDIGAKNGTLTIMVGGDKTLLSRLQQLFAPIAASVNYFGPAGSGQHAKMANQIMIAGTMTGLTEMLVYAKAAGLDLDETLKVVGGGAGANWSLSNYGPRILQGDYTPGFFAKHFLKDLRIALDEADNMHLQLPATQLAKQLYEQMVNTGKGNLGTQGLITMNDRWDQA
>NZ_CP029686.1|WP_003563013.1|1228903_1229755_+|metallophosphoesterase-family-protein
MTTIAILSDIHGNMTAFSAVIQDAKAHQADEYWFLGDLFLPGPGSDKLWATLHGLKPTHIVKGNWDDDLFWVLDGPVDLSQPTDVYFSRLVAYLWPHLTAENLATIRNWPLHEVFEQDGLIVSLAHNLPDKNQGHALYPDQPQLNFDQIAPDSQIDLAVYGHTHQQLLRYTSNGQVILNPGSIGQAYSPRPHLQTTTYADYALLQLNDGAITDLDLRQVPYDVSAELSLAKQQQLPYPEVYTKLRHTGATSTHNAAYLKQFEQRHDYQQEVAEFLHKYRHQHY
>NZ_CP029686.1|WP_003563011.1|1229822_1230620_-|metal-ABC-transporter-permease
MNLFAYAFMQNAFMASTFIAITTGIVGVFVVARNMSFLAHTLSEVGFAGAAFAVFAGIRPLDGMLLFTAISSISVGRMSVQASRREASISAVSSLFIGLGILFLSLSSANASYATTILFGSIIGISRADVWQLVALAAGVLVTLYFGYRRLAFDSFDPVGSAAQGLKSKYISIYFLLILAVSVSIGAQIVGSLLVFILLTLPPNVAKYLGRTLPQMIVISVITALIGVWSGLYLGFLTNWPVTFFIAAIEFLFYFLALWYHHRTN
>NZ_CP029686.1|WP_003563009.1|1230616_1231336_-|ATP-binding-cassette-domain-containing-protein
MSEPILTVNHLSFGFRDQQLYQDLSFQLNVGSMTSLVGPNGVGKTTLIRLLMAQLKPQAGTIRFRQQPPVRLGYVPQFRNVDTEFPLSIRSFIQLRQLDHLFFWHTGKEKAALDAVIKATHLGKIADTRLGMASGGEKQKAYLAQALLDDPNFLILDESTASLDVNTKQELMDLVQELNQTRQLTVLFVTHDLSLAKKYTQQYLLLTGSSYEMKPTAQMDLKAMPEELRNDAENRGVIA
>NZ_CP029686.1|WP_003563007.1|1231409_1231754_-|hypothetical-protein
MYEPTKKRRVAEDVAKVFPKEVTNQIFDVIAVMNKAKQIVTAPVAIAFSDDYTDDEMYAMIIQGNLAPAQEFPLTYAGEKPFLGHGYILVVKDKPKTIRLDFSTANPFKAEESK
>NZ_CP029686.1|WP_003568836.1|1232000_1233353_-|gluconate-permease
MDILVLVLGILLLLVLIIKFKFNTYVSLIITAVVVALGLGMAPAKIATSIQNGIGAQLGELALVFGFGAMLGRLVADAGGAYRIAHTLINAFGRRGLQLAVVLASFIIGIALFFEVGIVLLVPIVFAIAAEAGVPILTLGIPMAAALSVTHGFLPPHPAPTAISTALGASAGLVLAYGVIIAIPTVYIAGPLFSKLAHRFVPDAFERRGNLKALGPQKTFKLEETPSFGISVLTSLFPVILMAIATVYELVFHGGKLPKTPNGLDNVIAFIGSPSIAMLISLLFAMWAMGYARKLPAKAIMTTLEDAVKSIAMLLLVIGGGGAFKQVLIDGGVGDSVKNLFVGSGISPLILGWLIAVVLRIALGSATVAAMTASGLVLPLMQSAGIQPALMVLAIGAGSLAASHVNDAGFWMFREYFDLTIKQTLLTWTLLETIISVVGLGGVLLLSLVV
>NZ_CP029686.1|WP_003563002.1|1233537_1235106_-|gluconokinase
MAIKYMIGVDLGTTSTKVVLFDLKGHAIATANNPYPLYQDTPDMAEEDPEEIFAATVGGLTEVMHRGNVQPDELGGVSFSAAMHSLILMDENDKPLTRVITWADNRAAAYATKLKQSDLGMTLFKNTGVPTHPMSPLVKLLWLSAEHPELVAQTSHFIGIKDFILFRFFGRYVQDYSLANATGLFNIHTMDWDDRALDVANVRRDQLPELVDTSYQLTGLNANYAAVTGIDAKTPFILGASDGTLSNLGVGAIDPGVLAVTIGTSGAVRVVTDKPVVDPQGRLFTYYLSPNHWVVGGPVNNGGIVFRWVRDQLFAPEKLTAEQLQVDSYEILTEIASKIPAGADGLLFHPYLGGERAPIWDANARGSFFGLTRQHTRAHMVRAALEGIVYNLYMVMLMIEGITGKPKAIQATGGFARSALWRQMLADVFEQEVNIPESFESSALGAVVLGMKSLGLIDDLNVVKDMIGVTNTHEPNADNFQAYRELLPIWIRLTRKLGSEYQAIADYQRAHPDPNAHIAAED

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Crispr_ID: NZ_CP029686_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029686_2

2238194-2239681

TypeII

Consensus_repeat	Method
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	PILER-CR
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	CRISPRCasFinder
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	CRT
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	PILER-CR
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	PILER-CR

22 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of NZ_CP029686_2

>merge|NZ_CP029686|2|2238194-2239681|PILER-CR,CRISPRCasFinder,CRT,PILER-CR,PILER-CR
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGCATTTGTTGGTGCAGACATCTCCACAATCATGTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGCTGAGCGTTTTTCTTTCCTCAGGTGGTTGGCGTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGCACCAATCGTAGTAACTCTTAGCGTTAGTGTGTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGCCTTAAGTTTTGTCATCAGCACTGACCAGCCGTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGCCGAGTCGGCACGGATTCAACATGCGGCACAGTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGCATACAAAAAAAATCATACAGCCTGCATCACGTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGCCGGCATTGCCTCGGCGCATGGCTGGGGTGCGTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGCCTAAACGTTCGCGAACCTCATTCAAGCTAAGTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGCATGGATGATGCATTTGATCGACAGTGGCCCGTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGCGTGTTAGACTTAGATGTGGATGTTGCCCCGGTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGCCCCTTTCGCCGCCATCTTTGATCGCCCACGGTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGCGCTATCTGGCTTGAATTCCTTAATCGATTTGTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGCAAGCCGATGATATAAAGAAAGACGCCCCTTGTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGCGAGGCTTACCCCGTCTTTACCAGTTGGTCCGTCTCAGGTAGATGCCGAATCAATCAGTTCAAGAGCTTGTTCATAGCAGCGTTGGCACGGGTATTGGTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGCATGAAAGCCAGCGAAGGCACATTTTTTACTGTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGCCGTGTTATTGTAATTAGTCGCCAAGTCTTGGTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGCGCTGTCAAGTATCTCATGTCCTTCTAGAAAGTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGCAACGTTGACCGCTCTGTCTCACGAAACTGGGTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGCGAACTTTGTATCGTTTCTCTTTGCGCACGGGTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGCACGTTAAACGTACACCATGCCGCACAGTCCGTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGCGACGATCTCGCACATGCTCAGTGATATGCGGTCTCAGGTAGATGTCGAATCAATCATTTAAATGAC

>NZ_CP029686|2|1|2238194-2238889|PILER-CR
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	ATTTGTTGGTGCAGACATCTCCACAATCAT
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	TGAGCGTTTTTCTTTCCTCAGGTGGTTGGC
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	ACCAATCGTAGTAACTCTTAGCGTTAGTGT
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	CTTAAGTTTTGTCATCAGCACTGACCAGCC
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	CGAGTCGGCACGGATTCAACATGCGGCACA
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	ATACAAAAAAAATCATACAGCCTGCATCAC
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	CGGCATTGCCTCGGCGCATGGCTGGGGTGC
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	CTAAACGTTCGCGAACCTCATTCAAGCTAA
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	ATGGATGATGCATTTGATCGACAGTGGCCC
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	GTGTTAGACTTAGATGTGGATGTTGCCCCG
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGCCCCTTTCGCCGCCATCTTTGATCGCCCACGGTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	GCTATCTGGCTTGAATTCCTTAATCGATTT
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	AAGCCGATGATATAAAGAAAGACGCCCCTT
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	GAGGCTTACCCCGTCTTTACCAGTTGGTCC
GTCTCAGGTAGATGCCGAATCAATCAGTTCAAGAGC	TTGTTCATAGCAGCGTTGGCACGGGTATTG
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	ATGAAAGCCAGCGAAGGCACATTTTTTACT
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGCCGTGTTATTGTAATTAGTCGCCAAGTCTTGGTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	GCTGTCAAGTATCTCATGTCCTTCTAGAAA
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	AACGTTGACCGCTCTGTCTCACGAAACTGG
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	GAACTTTGTATCGTTTCTCTTTGCGCACGG
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	ACGTTAAACGTACACCATGCCGCACAGTCC


>NZ_CP029686|2|2|2238194-2239681|CRISPRCasFinder
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	ATTTGTTGGTGCAGACATCTCCACAATCAT
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	TGAGCGTTTTTCTTTCCTCAGGTGGTTGGC
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	ACCAATCGTAGTAACTCTTAGCGTTAGTGT
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	CTTAAGTTTTGTCATCAGCACTGACCAGCC
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	CGAGTCGGCACGGATTCAACATGCGGCACA
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	ATACAAAAAAAATCATACAGCCTGCATCAC
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	CGGCATTGCCTCGGCGCATGGCTGGGGTGC
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	CTAAACGTTCGCGAACCTCATTCAAGCTAA
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	ATGGATGATGCATTTGATCGACAGTGGCCC
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	GTGTTAGACTTAGATGTGGATGTTGCCCCG
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	CCCTTTCGCCGCCATCTTTGATCGCCCACG
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	GCTATCTGGCTTGAATTCCTTAATCGATTT
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	AAGCCGATGATATAAAGAAAGACGCCCCTT
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	GAGGCTTACCCCGTCTTTACCAGTTGGTCC
GTCTCAGGTAGATGCCGAATCAATCAGTTCAAGAGC	TTGTTCATAGCAGCGTTGGCACGGGTATTG
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	ATGAAAGCCAGCGAAGGCACATTTTTTACT
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	CGTGTTATTGTAATTAGTCGCCAAGTCTTG
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	GCTGTCAAGTATCTCATGTCCTTCTAGAAA
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	AACGTTGACCGCTCTGTCTCACGAAACTGG
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	GAACTTTGTATCGTTTCTCTTTGCGCACGG
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	ACGTTAAACGTACACCATGCCGCACAGTCC
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	GACGATCTCGCACATGCTCAGTGATATGCG
GTCTCAGGTAGATGTCGAATCAATCATTTAAATGAC

>NZ_CP029686|2|1|2238194-2239681|CRT
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	ATTTGTTGGTGCAGACATCTCCACAATCAT
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	TGAGCGTTTTTCTTTCCTCAGGTGGTTGGC
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	ACCAATCGTAGTAACTCTTAGCGTTAGTGT
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	CTTAAGTTTTGTCATCAGCACTGACCAGCC
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	CGAGTCGGCACGGATTCAACATGCGGCACA
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	ATACAAAAAAAATCATACAGCCTGCATCAC
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	CGGCATTGCCTCGGCGCATGGCTGGGGTGC
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	CTAAACGTTCGCGAACCTCATTCAAGCTAA
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	ATGGATGATGCATTTGATCGACAGTGGCCC
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	GTGTTAGACTTAGATGTGGATGTTGCCCCG
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	CCCTTTCGCCGCCATCTTTGATCGCCCACG
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	GCTATCTGGCTTGAATTCCTTAATCGATTT
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	AAGCCGATGATATAAAGAAAGACGCCCCTT
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	GAGGCTTACCCCGTCTTTACCAGTTGGTCC
GTCTCAGGTAGATGCCGAATCAATCAGTTCAAGAGC	TTGTTCATAGCAGCGTTGGCACGGGTATTG
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	ATGAAAGCCAGCGAAGGCACATTTTTTACT
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	CGTGTTATTGTAATTAGTCGCCAAGTCTTG
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	GCTGTCAAGTATCTCATGTCCTTCTAGAAA
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	AACGTTGACCGCTCTGTCTCACGAAACTGG
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	GAACTTTGTATCGTTTCTCTTTGCGCACGG
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	ACGTTAAACGTACACCATGCCGCACAGTCC
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	GACGATCTCGCACATGCTCAGTGATATGCG
GTCTCAGGTAGATGTCGAATCAATCATTTAAATGAC

>NZ_CP029686|2|2|2238920-2239285|PILER-CR
	ATTTGTTGGTGCAGACATCTCCACAATCAT
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	TGAGCGTTTTTCTTTCCTCAGGTGGTTGGC
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	ACCAATCGTAGTAACTCTTAGCGTTAGTGT
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	CTTAAGTTTTGTCATCAGCACTGACCAGCC
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	CGAGTCGGCACGGATTCAACATGCGGCACA
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	ATACAAAAAAAATCATACAGCCTGCATCAC
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	CGGCATTGCCTCGGCGCATGGCTGGGGTGC
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	CTAAACGTTCGCGAACCTCATTCAAGCTAA
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	ATGGATGATGCATTTGATCGACAGTGGCCC
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	GTGTTAGACTTAGATGTGGATGTTGCCCCG
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGCCCCTTTCGCCGCCATCTTTGATCGCCCACGGTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	GCTATCTGGCTTGAATTCCTTAATCGATTT
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	AAGCCGATGATATAAAGAAAGACGCCCCTT
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	GAGGCTTACCCCGTCTTTACCAGTTGGTCC
GTCTCAGGTAGATGCCGAATCAATCAGTTCAAGAGC	TTGTTCATAGCAGCGTTGGCACGGGTATTG
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	ATGAAAGCCAGCGAAGGCACATTTTTTACT
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGCCGTGTTATTGTAATTAGTCGCCAAGTCTTGGTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	GCTGTCAAGTATCTCATGTCCTTCTAGAAA
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	AACGTTGACCGCTCTGTCTCACGAAACTGG
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	GAACTTTGTATCGTTTCTCTTTGCGCACGG
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	ACGTTAAACGTACACCATGCCGCACAGTCC


>NZ_CP029686|2|3|2239316-2239615|PILER-CR
	ATTTGTTGGTGCAGACATCTCCACAATCAT
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	TGAGCGTTTTTCTTTCCTCAGGTGGTTGGC
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	ACCAATCGTAGTAACTCTTAGCGTTAGTGT
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	CTTAAGTTTTGTCATCAGCACTGACCAGCC
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	CGAGTCGGCACGGATTCAACATGCGGCACA
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	ATACAAAAAAAATCATACAGCCTGCATCAC
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	CGGCATTGCCTCGGCGCATGGCTGGGGTGC
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	CTAAACGTTCGCGAACCTCATTCAAGCTAA
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	ATGGATGATGCATTTGATCGACAGTGGCCC
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	GTGTTAGACTTAGATGTGGATGTTGCCCCG
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGCCCCTTTCGCCGCCATCTTTGATCGCCCACGGTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	GCTATCTGGCTTGAATTCCTTAATCGATTT
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	AAGCCGATGATATAAAGAAAGACGCCCCTT
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	GAGGCTTACCCCGTCTTTACCAGTTGGTCC
GTCTCAGGTAGATGCCGAATCAATCAGTTCAAGAGC	TTGTTCATAGCAGCGTTGGCACGGGTATTG
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	ATGAAAGCCAGCGAAGGCACATTTTTTACT
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGCCGTGTTATTGTAATTAGTCGCCAAGTCTTGGTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	GCTGTCAAGTATCTCATGTCCTTCTAGAAA
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	AACGTTGACCGCTCTGTCTCACGAAACTGG
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	GAACTTTGTATCGTTTCTCTTTGCGCACGG
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	ACGTTAAACGTACACCATGCCGCACAGTCC
GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029686.1\|WP_003571214.1\|2236306_2237212_+\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
NZ_CP029686.1\|WP_003571199.1\|2241538_2241964_+\|NusG-domain-II-containing-protein	unknown	unknown	gnl\|CDD\|227646
NZ_CP029686.1\|WP_003571194.1\|2243848_2245480_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP029686.1\|WP_110344403.1\|2246926_2248765_+\|PTS-glucose-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|273919
NZ_CP029686.1\|WP_003566934.1\|2240287_2241388_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029686.1\|WP_003571193.1\|2245617_2246475_+\|PRD-domain-containing-protein	unknown	unknown	gnl\|CDD\|170086
NZ_CP029686.1\|WP_003571184.1\|2252868_2254200_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224169
NZ_CP029686.1\|WP_003659473.1\|2232027_2236116_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	mkCas0193_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|374653
NZ_CP029686.1\|WP_003571189.1\|2248936_2250385_+\|family-1-glycosylhydrolase	unknown	unknown	gnl\|CDD\|236580
NZ_CP029686.1\|WP_003571225.1\|2227003_2228731_+\|thiol-reductant-ABC-exporter-subunit-CydC	unknown	unknown	gnl\|CDD\|227320
NZ_CP029686.1\|WP_003566920.1\|2250511_2251078_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP029686.1\|WP_003566944.1\|2228802_2229126_-\|DUF4870-domain-containing-protein	unknown	unknown	unknown
NZ_CP029686.1\|WP_003571227.1\|2225280_2227023_+\|thiol-reductant-ABC-exporter-subunit-CydD	unknown	unknown	gnl\|CDD\|227321
NZ_CP029686.1\|WP_003586314.1\|2237189_2237495_+\|CRISPR-associated-endonuclease-Cas2	cas2	mkCas0206_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|226043
NZ_CP029686.1\|WP_003571196.1\|2242160_2243852_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|227321
NZ_CP029686.1\|WP_003571223.1\|2229319_2229694_-\|YxeA-family-protein	unknown	unknown	gnl\|CDD\|377665
NZ_CP029686.1\|WP_003571219.1\|2231084_2231879_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029686.1\|WP_003659460.1\|2251244_2252663_+\|multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP029686.1\|WP_003571221.1\|2229917_2231084_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029686.1\|WP_003571210.1\|2237491_2238169_+\|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd12218_csn2_CAS-II-A	gnl\|CDD\|213411

Protein	Function_ID	Function_description	E-value
NZ_CP029686.1\|WP_003571214.1\|2236306_2237212_+\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	5.52602e-86
NZ_CP029686.1\|WP_003571194.1\|2243848_2245480_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	4.64472e-93
NZ_CP029686.1\|WP_003586314.1\|2237189_2237495_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.69699e-23
NZ_CP029686.1\|WP_003571193.1\|2245617_2246475_+\|PRD-domain-containing-protein	gnl\|CDD\|170086	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional.	4.4658e-35
NZ_CP029686.1\|WP_003571184.1\|2252868_2254200_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224169	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion].	7.40912e-107
NZ_CP029686.1\|WP_003659473.1\|2232027_2236116_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|374653	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9. The REC lobe of Cas9 - the CRISPR-associated endonuclease Cas9 - includes the REC1 and REC2 domains. REC1 forms an elongated, alpha-helical structure consisting of 25 alpha helices and two beta-sheets, whereas REC2 inserted within REC1 adopts a six-helix bundle structure. The REC lobe and the NUC lobe of Cas9 fold to present a positively charged groove at their interface which accommodates the negatively charged sgRNA:target DNA heteroduplex. CRISPR (clustered regularly interspaced short palindromic repeat)-Cas system occurs naturally in bacteria as a defense against invasion by phages or other mobile genetic elements. Cas9 is targeted to specific genomic locations by sgRNAs or single guide RNAs, in order to complex with invading DNA in order to cleave it and render it inactive.	1.17826e-117
NZ_CP029686.1\|WP_003571189.1\|2248936_2250385_+\|family-1-glycosylhydrolase	gnl\|CDD\|236580	PRK09593, arb, 6-phospho-beta-glucosidase; Reviewed.	0
NZ_CP029686.1\|WP_003571225.1\|2227003_2228731_+\|thiol-reductant-ABC-exporter-subunit-CydC	gnl\|CDD\|227320	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].	1.31385e-158
NZ_CP029686.1\|WP_003566920.1\|2250511_2251078_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	3.93685e-11
NZ_CP029686.1\|WP_003571227.1\|2225280_2227023_+\|thiol-reductant-ABC-exporter-subunit-CydD	gnl\|CDD\|227321	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].	0
NZ_CP029686.1\|WP_110344403.1\|2246926_2248765_+\|PTS-glucose-transporter-subunit-IIA	gnl\|CDD\|273919	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.	0
NZ_CP029686.1\|WP_003571196.1\|2242160_2243852_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|227321	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].	4.89349e-93
NZ_CP029686.1\|WP_003571223.1\|2229319_2229694_-\|YxeA-family-protein	gnl\|CDD\|377665	pfam06486, DUF1093, Protein of unknown function (DUF1093). This family consists of several hypothetical bacterial proteins of unknown function.	2.71411e-19
NZ_CP029686.1\|WP_003571199.1\|2241538_2241964_+\|NusG-domain-II-containing-protein	gnl\|CDD\|227646	COG5341, COG5341, Uncharacterized protein conserved in bacteria [Function unknown].	6.99799e-34
NZ_CP029686.1\|WP_003659460.1\|2251244_2252663_+\|multidrug-efflux-MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.43123e-65
NZ_CP029686.1\|WP_003571210.1\|2237491_2238169_+\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213411	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	7.08547e-78

>NZ_CP029686.1|WP_003571210.1|2237491_2238169_+|type-II-A-CRISPR-associated-protein-Csn2
MNLAYYPFQLITTKPSEVTVIDTASPKVLTDLIEALRNDLDKVVLSNDQLEPQEIRKASLWIGDPRLELDLDKLFQRLIYKRMELLIENQRLVELIDQSQQMAMDLIQDPFLSDLPVTVEPGGKLEQIMKYCNVHFDETVTTESTSKIEALIQTLTKLEEMKLVILTNVSHYLSARDFFAVTEQIGDTELQVVLIEFSKVNRRKYFEKCQYIYIDEDFVDSRELD
>NZ_CP029686.1|WP_003586314.1|2237189_2237495_+|CRISPR-associated-endonuclease-Cas2
MRLMIMFDLPVLTSENRRNYRKFRKALINEGFLMMQYSIYVRVCSTKKSAEFLEHRIAAMKPPIGTVQTLMVTEAQYQAMHFLVGEAKQDIRNSADRTVII
>NZ_CP029686.1|WP_003571214.1|2236306_2237212_+|type-II-CRISPR-associated-endonuclease-Cas1
MGWRSLIVTQHCKVTTKNRTLVVQTDSEVNNVPIEDINQVVFTTTRALLSADAITTLAEANAKVIFSGRDGQPVTETTNLYSDRRKADLVRLQVNWPKSLVENLWTKIVAAKVSIQAQVTKLCGYDNQSLLDDLDTLEINDHSNREATAARKYFKLIFGDDFSRSDICATNAALNYGYSILLSTTNRAIVSAGHITEIGMHHSSVANQYNLGSDLMEPFRPAIDYWVANQKFTDLTPNIKYGLIALLNLEVTFNGKKALLQNALDEHVENCLAYLDGKRNNCRIEVEFPNEVSSDAFNDHV
>NZ_CP029686.1|WP_003659473.1|2232027_2236116_+|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MTKLGKPYGIGVDIGSNSIGFAAVDENSHLIRLKGKTVIGARLFEEGKAAAKRRAGRTTRRRLSRNRWRLSFLRDFFESHITPTDPNFFMRQKYSEISPKDKARYKYEKRLFNDRTDAEFYQQYSTMYHLRNRLMTDPSRADVREIYFAIHHILKSRGHFLTPGDAKDFNTNDVALDEIFPALQDAYAQVYPDLGITFDEDKANEFKTILLNEIATSIDTQRALVKLLLAEEDDKDILKQQKQVLTEFAKAVVGLKTKLNLALGTEVDSSEATAWNFSLGQLDDKWAGIESAMTDEGTEILDQIRDLYRARLLNGIVPTGKTLSQAKVDDYTQHHEDLQLFKAYLKQLEDDGTAKAIRQLYDRYIDGDDAAPFLRENFVKALTKDVTAHPNTKSPELLERLAQPDFMLKQRNKANGAIPVQMQQRELDQIIKNQAVYYDWLAAPNPVEKHRKSMPYQLDELLNFRIPYYVGPLVTAKEQKAAQGGVFAWMVRKDPEGNITPYNFDEKVDREASANTFIQRMKTTDTYLIGEDVLPKQSLLYQRYEVLNELNNVRVNNEKLSIEQKQQVIRELFERHNSVTIKQFAENLRAHGDYAHIPEIRGLADEKRFLSSLSTYRQLKSLLPEAIDDPAKQADIENIIAWSTVFEDAAIFKTKLKEISWLGSEAITKLSNIRYRGWGQFSRKFLNGLTLGNGHTIIQELLLSTNNLMQILTDETLQKKMTELNADKLKTANINDAIDNAYTSPSNKKALRQVLRVVDDIKRAADGQDPSWLYVETADGGGTPGKRTRARQHQLQEIYANAAHELIDTAVRGELEDKISDKADFNDRLVLYFMQGGRDIYTGAPLNIDQLSSYDIDHILPQSLIKDNSLDNRVLVHAIINREKNATFASTIYAQKMNATWRQWHEAGLISGRKLRNLQMRPDQIDKYASGFVARQLVETRQIIKLTEQIVAAQYPDTKIIAVKAGLSHQLREELEFPKNRDVNHYHHAFDAFLAARIGTYLLKRFPNLQAFFTYGKFTKADVKKLRGFNFIRDITHAEDKIVAKDTGEVVWDKQRDVDELDRIYNFKRMLITHEVRFETADLFKQTVYGARDSKEAGGSKQLIPKKKGYPVDIYGGYFRENTAYLAVVKVTKKTETIFKVVKIATSQVAALNKARSRSTAEELSVLTELLKPKFSKVGKNGKITDTPFEVVLPRVPREQLFYNAKYGFFMVNSDTMFHNFQEIWVSRSDQKILQQIRKAKIDYPNVDQDLDNLFHNLADQIVKYFDLYSIAGFKEKISQSQNTFNDLAVDDTDQSVGKITVINELLKGAQANGMTGSLKVLKISTPFGFTQDKSGVLTKDSSIIYQSPTGLFERSVRLTDL
>NZ_CP029686.1|WP_003571219.1|2231084_2231879_+|hypothetical-protein
MEATKLAKRKQWPVPFSQTEPHFTFNNWLKFFSVVLFTYLLFYTRNPIGGFFNMSGTTFLNVANGWTRAVVVFGGVLYCAIIFAGAVWAAGWDGLSQLFASFRWRDIWYVFAYGVLYLIASTLGRILGDLVPIRFGVDFVNTLEAAQFGNLGAFSLISFRAFFMTLATQLTAVMIFLASQQLFSRLAIKHRRWALFLTYLLALAVTAVVTTTPLAPHVFVNIASGLVAQLPLYWVYRRSRNILVVTLSAFILMHVMIGLAVMLG
>NZ_CP029686.1|WP_003571221.1|2229917_2231084_+|hypothetical-protein
MSRQNLMILIVDLVLIIIFIGGFGWGIGTVKRYQVEPNTSRTETNTDSLYSESRFEKTLQKFKRLDLMVRLGPVKDAKTFNYTPDEFNVKYSSQPIVSGLKATKTLNAETGEVEVCTTMTPQGVTVAGDYLLTTAYDHDGFHNSVMYIQDLKTGKLLNTVVLNGRPHVGGLTYDAKNDNIWICGRRNNAAEVFAIKLKTALTYNVDKKAKAVAYSQRAQLGNISRASFVTYYENALFVGFFNPTGKGNIQRYPLNDKGQVVGKSLTSSISNQFDVLTQSVLHQDILSKIQGMAFYGDYTILSQSYGGGNSTLYIFKTDPKKTIFRASDAIDTFDMPSHLEQISTHDGRMYMMFESAAYAYRHRSTNQLDRVLSMNLEGFVQLVLKEEK
>NZ_CP029686.1|WP_003571223.1|2229319_2229694_-|YxeA-family-protein
MNMKKILIGIGIFIGLVILGGAGFYAWYTQSTPYYTQITTTGKKFDVIDDETGAARDIDYAYTQMAYDEKGHGTEVDFNGHKSRPLKMQAYLRLDYSTRRNQVISWEVVPKEKVPKAALAKLNR
>NZ_CP029686.1|WP_003566944.1|2228802_2229126_-|DUF4870-domain-containing-protein
MTNEHKVLRGLSYISVIFAPILFPILVWIFTPQGSVTRDTAKHALWLHIIPTLLSIFIFMIIGGVGFFTNSINATSAVSLILLLVAMVVDIGMVVYNIYTGIKIITS
>NZ_CP029686.1|WP_003571225.1|2227003_2228731_+|thiol-reductant-ABC-exporter-subunit-CydC
MHWLKNEHWVRPDLKRYRGLLVWSLILGVMTFVFAGALMFTSGFLIDKSATKPLFAAIYVTVVLTRAFGIGRPVFQYIERLTSHNWVLRITSHMRRKLYKVLETDAAFVSEHHQTGDILGLLADDIGHIQNLYLRMIFPTVVGAGLTVIATLLLGWFNWGFALWIMLLLLFQVLILPWWGLVVERFRKAEQKQLNHDAYVSLTDSVLGLSDWVITHREKDFMSQSLAAPKKLAASTVKSKRFQWRRDFVGQLLFVLIVISMLIWTNLEWTGNQASANWVGAFVLVVFPLDQAFSGIAQGVGEWPTYRDAIRHLNDLQPVTRQLPQQQAVPTQFKEMTLQHLSFQYTPKDPELITDIDLTVHSGEKIAILGPSGMGKTTLLQLVLGDLTPTTGNVLVDGQDVLTYQQHRTNLFAVLDQSPFLFNTSIVNNVRLGNEQASDADVAAALKAVKLDQLVAQLPNGINSSVEEAGFGFSGGERQRLSLARILLQDAPIVLLDEPTVGLDPITEQALLETMFTVLQGKTILWVTHHLQGVNQTDRVIFLEDGRLTMNDTPSHLAKNDERYQNLYALDAGLR
>NZ_CP029686.1|WP_003571227.1|2225280_2227023_+|thiol-reductant-ABC-exporter-subunit-CydD
MIDKTLMRLSGMKRIMTMLAGFALVQAFVILLQGKFLAEGIVHSWNRQSLAGLWLPLGLFATAFVIRQLIVWVRNRIGARFAMTSSAWLQAQLLKHLYALGPAAVAKEGTGNLVTMALDGIPEAENYIELILNKILNMSIIPWVLVAYIWYENWLTGFTLLIMFPIIILFMVILGLAAQDKSESQYAGFQKMSNHFIDSLRGLKTLQLMGISRQYANNVYDVSEDYRKQTMGVLRIAMLSTFALDFFTTLSIAVVAVFLGIKLMDGAIPLYPAMVALILAPEYFMPIRDFGTDYHATLNGKNAMKAIWQVIDQPLPTDTNVLPAFSRWQAQDTVTINHLDFTYPNERAGIQDANLQFTGTEKVAIIGASGSGKSTLLNLIGGFLQPQKAAMTVRGTKVPHMTQAAWQDHLSYIPQDPYLFADTIAANIRFYRPDASDEDVKQAAEAAGLSHWIETLADGYATRIGEGGRGISGGQAQRIALARTLIDTNRSIWLFDEPTAHLDIETEAELKETLVPLFKNRLVIFATHRLHWLNQMDRVIVVDGGKIIAEGTPSELAAHSKPYQALVHEMRGEFNALVEK
>NZ_CP029686.1|WP_003566934.1|2240287_2241388_+|hypothetical-protein
MKKLIVLSATLLVSMGLAACSSGSSSSSSKSSSTTSQTSNAKVKINTGADASAKVPAAGTLVMRQLYAAPHGKQSFAAVNVTLNGDTIVSAKIDEFQYVKKSSDWTGVPNSNKDFGKSYPKGQFLIAKAENSKPYSALMKKEAKATHTWEENETAITNFVKGKKIEDLKADVAKVKDTKKVSDVVSGATFADTAGYLQAIYDAATTGMVAEGIQTTDNTITEGQVLAAPHGTQSFGIVTVAMQGDKIANVFLDEFQYMPSKDFGGVPNSNADFGKGIKSGTVLASKRANSEAYSAIMKSKGKATQTWQENSNAIDEFAKGKTIAELETAVSDLKGKKKVSDVVSGATFTDTSGYLTAIISAAKAAK
>NZ_CP029686.1|WP_003571199.1|2241538_2241964_+|NusG-domain-II-containing-protein
MRWLKKYVRPFDYVIVIVLFVACFLPVGIFSLTEANVNTNQKVAVISINGHVKRRIQLTTHTRHQQFTLYPAKGQYNIIEVQGARIRDKEDNSPDQIAVHTGWISQVGQQSICLPHKLLIEIKPAQAGTGTSGDTGGLVHP
>NZ_CP029686.1|WP_003571196.1|2242160_2243852_+|ATP-binding-cassette-domain-containing-protein
MLGLLKYGRDQRWAGVIETVFDWLPTLLPIMIALNFAAKRPGNALIITVILVLIWLGYVIGYERHHRHAWAMSAKRELRDHYFEALYQRNNAGDATAADNAVIQRDLGGLNNLDMFYSTLFPTLIQAGLTFLLLIGLSVWYGSWLAFLPLACVFLIGFAMMFLGKKMSAQNKAHLAGFLRMGGRFMNDLSGMNTLVMYNAADRYAKKFADDSEYFRQATMNLLRTQLQVLFVINGFVYLTVFAGGFVTALQLAAGQLPAAGAFATWFALAMMMVNARQLGYFFHVVKSNGPALAGILATIAKSKTTPATVKITDNRPLKQLVLQDVAIGYEADAPLVSDINATLVPGKLYGLAGENGTGKSTLTQALLGQLTPLSGTIMADNTPVTALSNAQRAAVFGYVAANDYIFSGTIKENLLLGNQFGDQWQQHLDELGLMHFVTDLQDGYATEVGEGGRLLSPGQRQQLAFARMLLADKTVYLLDEMTSSIDAANAAIILAAIKRLSRQKIVLFISHDLSAMAEADVVWFIHDHQLISADHAQLYRDQPAYRHLVDNPEAMLKEGQPS
>NZ_CP029686.1|WP_003571194.1|2243848_2245480_+|ABC-transporter-ATP-binding-protein
MIRSLLRYTHHLTGAIIISFLIGLVAELTKVVVLVLAAMMLFDPQNASHLLIPGIIAVVIVGLGSFGEQYAGHFVAFHVLAELRGAVYRKLVQLAPAKLDSQGSGKLLKLIGSDIEAMEIFYAHTIVPVAIGLIYGVLMVAVYSSLNGPAAAVVLVSYAAVGLLIPYYRHEQMTAKAQAADRQKAVNQQYLLESVRGMAVLRQLEVADARMKTGNEGFDHEATAFQQSQFGQLLKNMSATLVILVAWLFIVWLSGWTQPQPLQQALLAVFPLTFGPLLALTNLPASLLNGFAAARNLLNLLQEAPATSAAIDATQTLDQIATIQVDHVTFKYPSRDETVLRQVSLSLHAGEIVGFVGASGSGKSTLAKLIMGWYPLTQGRILIDGIDLTKIDPASLRAQVNYLPQTPVFFSESVRDNLTLHDSTITDAQIWTVLDQVKLTSRLRQAEKGLDENVVSGQLQFSSGEQQRLELARALLHPSSVLVLDEPTSNLDTENERLILDAIKAYYHGIVIMISHRAESAAYADRLYRFADHRVSAASTAPK
>NZ_CP029686.1|WP_003571193.1|2245617_2246475_+|PRD-domain-containing-protein
MIIQNVLNNNAVVARHQQREVIVVERGIGFRAKKDAKMALRDSMKVYVPEDQAKLKIATATIASLPSAYLDLAAGIIQEAEKRLQTTFNSYLLIELADHVHFAVQRLHEKIVLHNKLLWEIQVAYTQEYEMGEWALHQIAAQLHEQLPEDEAGFIALKFVSNDLNHQQTVNSLAFTQTLASLTKIIFYNLGLDMNVKTPDYQRLVIHLKFFLQRMYAAAPSPLSLKMENYDYVLLKHLQQDYARAYHCMEDVDRFMQQKLAIAIPKNEQIYLTMHIARLAKSLAE
>NZ_CP029686.1|WP_110344403.1|2246926_2248765_+|PTS-glucose-transporter-subunit-IIA
MNESGLAQQLLNLIGGKQNINQVWHCATRLRFTLKDRAKVPKDKIEALDGVITVVEASGQFQVVIGNNVGDVYHEVVKLEPSLSEGETSGETAAQGKMTFKSAFNSLLTFISGVFTPFLGAMAGAGILKGLLSLAVVMGWLTAKSGAYQIWWAAADGIFYFLPIALAFTAAKQLKVNQFVSMAIAAAMVSPGIVALGAKATTIDFFGIPVVPANYTATVLPILLVVVVQKFLEPVFNKLWHESVRNIMAPLCLLVVIVPLTLIVVGPISATVSSWLATAIVSLNKSVPILAGLVLGGFWQVIVIFGVHWALVPVMMNNIAQNGTDLMMPILLPAVLSQAGAALAVFLRTRDAKMKSLAGSSTITALFGITEPTIYGITLKLKKPFYLACVAGAVGGMIVAISGAGANAAALASVLSLPTFIGKGFGLSVVGDVVAFALGTVLTYFFGGINAGAKTKTAPSANSELGEALAAPVKGVLVPLTGLADEVFASETMGKGVAIVPENGIVKAPVAGVIRLLYPTGHAIGIHSDKGSEILIHIGIDTVNLKGKHFQPLVAQGQHVEIGMPLVQFDHEAIEKEGYESTVMMIVTNSDQYQIATLGQGATDDRPVMTLA
>NZ_CP029686.1|WP_003571189.1|2248936_2250385_+|family-1-glycosylhydrolase
MTYLNFPKNFLWGGATAANQLEGAYQEDGKGLSVADVLPQGKDRFAIVNRPDFNWTIDKSKYRYPNHQGIDHYHRFKEDIKLFSEMGFKCYRFSIAWSRIFPEGDEKTPNASGLKFYDEVIATCLKYDIEPVVTISHYEMPLHLVTKYGGWKNKRLIEFYKHFAETVLTRYFKQVKYWMTFNEINSAWAFPVMSQGLVANNGGNDKQTIFQAWHNQFVASAWAVKIGHALDPKLQVGCMLLYATTYSYDANPVNQLATLQQNQAFNFFCGDVQVRGEYPAYTDALMADNGFKFTDLNFSAEELTLLKNHPVDYIGFSYYMSAVVETVEKEHAEVGGNLLSGVKNPFLKASEWGWQIDPIGLRIALNQLYERYRKPLFIVENGLGAVDKPDADGKIKDDYRIDYLKQHIEQMGAAIHDGVDLMGYTPWGCIDLVSASSGQMSKRYGFIYVDLDDAGQGSLNRYKKQSFNWYQRVIASNGTDLG
>NZ_CP029686.1|WP_003566920.1|2250511_2251078_+|TetR/AcrR-family-transcriptional-regulator
MDTREKLVATAASLFQKEGVRATGLAQILTVSGTPKGSLYYYFPNGKAQLIEAAITYAGQHILEHVQRDLDRYKAPDAALAGQLESMATEMQEKGHLGGNSISLIALETGDDPELQAACSAVFTQLETLYIKKLTSAGIPPDRAQPLGQFIQASIEGAIILAATKDNPDLLRQTADQLTRLIKLALAA
>NZ_CP029686.1|WP_003659460.1|2251244_2252663_+|multidrug-efflux-MFS-transporter
MQLSQTKEMPQARVHVAHPAMAMIGLMIGAFVGMFSETSLNIALPSLMTALNVSQGTIQWLVTGYMLVIGICMPLSSLLSKWFNTKKIILFALGAFILGSVVSAMGAVFPVVLIGRLIQGIGTGLILPLMFSVAMQIFPPYKLGTVMGMAALVIMFAPAIGPTITGLVLAKFTWHYIFWLFVPFLVLAFIFTLTSMENVYQQTQTPVDWLSIVESSIGFAGIVVGTTMASDAGWLSLEVGLALLVGVIGLVLYARRQLSLTNPMLNLRVFANKQFTVGTLLVMLDFGVILASMYLLPMYLQRVMGLPVAMTGLVMLPGGIVNAAVSAIAGRMYDSHGAKWLSRGGFVIAILGVLILLNSGAQSPLWWIILGHVVLMIGAPLAMSPAQTYGLNSLSGAESADGSALLNTLQQIVGAVSTAVATSMLALGSAKAAGQTGLTIGSHFGFMFVLILAIIGLIVAFQVKKPQASRDL
>NZ_CP029686.1|WP_003571184.1|2252868_2254200_+|NAD(P)/FAD-dependent-oxidoreductase
MSEYDFDVLYLGSGHGAFDGAGPLAASGKKVGVIESDMIGGTCPNYGCNAKITLDTPVVLQRMAERMQGIVSGSITINWSELVAHKQAVIKPLPTNIGSNLKQTGVTIIHGHGKFIDPHSITVAGKTYTAENMVIATGRRPHHLDIPGTELAHDSRAFMDLKTLPKRIGILGSGYISMEFATIANAAGAEVSVFMHADKALREFHQPFVKAVMADMTKRGVKFISSADVQALKQTAQGIAIQYGDHQEQQVDWVLDATGRIPNDDQIGLEAAGVTFNQRGIPVDDHLQTNVPNIFASGDVLDKPQPKLTPTATFESYYLYQLLSGQTTDPIDYPAIPSTVYTTPRIAKVGVMPEEAADGDYQVVRNHIPDDWYHQTDQETMGDSILIFDRDHHLVGATEFSAQAEDAINTLLPAIVFHFSKQQMWQMAHIFPSESAAAWHKIR

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Crispr_ID: NZ_CP029686_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029686_3

2656652-2656772

Orphan

Consensus_repeat	Method
GGTTTCTGGGGTGGCGAACGCGTTTAGAAACCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029686_3

>merge|NZ_CP029686|3|2656652-2656772|CRISPRCasFinder
GGTTTCTGGGGTGGCGAACGCGTTTAGAAACCGTAGTGTAAGTGGGATGGCCGCACAATGGTCATTGCGACCAAGGCCCTTACACGTTGGTTTCTGGGGTGGCGAACGCGTTTAGAAACCG

>NZ_CP029686|3|3|2656652-2656772|CRISPRCasFinder
GGTTTCTGGGGTGGCGAACGCGTTTAGAAACCG	TAGTGTAAGTGGGATGGCCGCACAATGGTCATTGCGACCAAGGCCCTTACACGTT
GGTTTCTGGGGTGGCGAACGCGTTTAGAAACCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029686.1\|WP_003566054.1\|2661992_2663174_+\|acetyl-CoA-C-acyltransferase	unknown	unknown	gnl\|CDD\|180261
NZ_CP029686.1\|WP_003566078.1\|2651656_2652094_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029686.1\|WP_003566068.1\|2655801_2656266_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP029686.1\|WP_003566085.1\|2645151_2646345_+\|serine-hydrolase	unknown	unknown	gnl\|CDD\|365903
NZ_CP029686.1\|WP_003566087.1\|2643684_2645148_+\|nicotinate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236426
NZ_CP029686.1\|WP_003566063.1\|2658875_2659694_-\|aldose-1-epimerase	unknown	unknown	gnl\|CDD\|185696
NZ_CP029686.1\|WP_003566081.1\|2647394_2648552_+\|serine-hydrolase	unknown	unknown	gnl\|CDD\|365903
NZ_CP029686.1\|WP_003566056.1\|2661348_2661648_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029686.1\|WP_003566065.1\|2657676_2658816_+\|M20-family-metallopeptidase	unknown	unknown	gnl\|CDD\|349944
NZ_CP029686.1\|WP_003575996.1\|2664449_2665616_+\|hydroxymethylglutaryl-CoA-synthase	unknown	unknown	gnl\|CDD\|213655
NZ_CP029686.1\|WP_003566067.1\|2656992_2657598_+\|ECF-transporter-S-component	unknown	unknown	gnl\|CDD\|227029
NZ_CP029686.1\|WP_003566072.1\|2654462_2655215_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224026
NZ_CP029686.1\|WP_003566058.1\|2660517_2661348_+\|sugar-phosphate-isomerase/epimerase	unknown	unknown	gnl\|CDD\|224007
NZ_CP029686.1\|WP_003566070.1\|2655356_2655809_+\|SprT-family-protein	unknown	unknown	gnl\|CDD\|235290
NZ_CP029686.1\|WP_003566048.1\|2665939_2667694_+\|pyruvate-oxidase	unknown	unknown	gnl\|CDD\|213733
NZ_CP029686.1\|WP_003566061.1\|2659806_2660370_+\|restriction-endonuclease	unknown	unknown	gnl\|CDD\|377369
NZ_CP029686.1\|WP_003566079.1\|2648859_2651520_+\|cation-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319781
NZ_CP029686.1\|WP_003566074.1\|2653570_2654470_+\|branched-chain-amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226605
NZ_CP029686.1\|WP_003566083.1\|2646347_2647175_+\|ammonia-dependent-NAD(+)-synthetase	unknown	unknown	gnl\|CDD\|234831
NZ_CP029686.1\|WP_003575994.1\|2663185_2664466_+\|hydroxymethylglutaryl-CoA-reductase,-degradative	unknown	unknown	gnl\|CDD\|153082

Protein	Function_ID	Function_description	E-value
NZ_CP029686.1\|WP_003566054.1\|2661992_2663174_+\|acetyl-CoA-C-acyltransferase	gnl\|CDD\|180261	PRK05790, PRK05790, putative acyltransferase; Provisional.	1.47814e-180
NZ_CP029686.1\|WP_003566068.1\|2655801_2656266_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	5.67331e-15
NZ_CP029686.1\|WP_003566085.1\|2645151_2646345_+\|serine-hydrolase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	8.24724e-43
NZ_CP029686.1\|WP_003566087.1\|2643684_2645148_+\|nicotinate-phosphoribosyltransferase	gnl\|CDD\|236426	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated.	0
NZ_CP029686.1\|WP_003566063.1\|2658875_2659694_-\|aldose-1-epimerase	gnl\|CDD\|185696	cd09019, galactose_mutarotase_like, galactose mutarotase_like. Galactose mutarotase catalyzes the conversion of beta-D-galactose to alpha-D-galactose. Beta-D-galactose is produced by the degradation of lactose, a disaccharide composed of beta-D-glucose and beta-D-galactose. This epimerization reaction is the first step in the four-step Leloir pathway, which converts galactose into metabolically important glucose. This epimerization step is followed by the phosophorylation of alpha-D-galactose by galactokinase, an enzyme which can only act on the alpha anomer. A glutamate and a histidine residue of the galactose mutarotase have been shown to be critical for catalysis, the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. Galactose mutarotase is a member of the aldose-1-epimerase superfamily.	5.64258e-24
NZ_CP029686.1\|WP_003566081.1\|2647394_2648552_+\|serine-hydrolase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	3.83637e-45
NZ_CP029686.1\|WP_003566065.1\|2657676_2658816_+\|M20-family-metallopeptidase	gnl\|CDD\|349944	cd08659, M20_ArgE_DapE-like, Peptidase M20 acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE)-like. Peptidase M20 acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE) like family of enzymes catalyze analogous reactions and share a common activator, the metal ion (usually Co2+ or Zn2+). ArgE catalyzes a broad range of substrates, including N-acetylornithine, alpha-N-acetylmethionine and alpha-N-formylmethionine, while DapE catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelate (L,L-SDAP) to L,L-diaminopimelate and succinate. Proteins in this family are mostly bacterial and have been inferred by homology as being related to both ArgE and DapE. This family also includes N-acetyl-L-citrulline deacetylase (ACDase; acetylcitrulline deacetylase), a unique, novel enzyme found in Xanthomonas campestris, a plant pathogen, in which N-acetyl-L-ornithine is the substrate for transcarbamoylation reaction, and the product is N-acetyl-L-citrulline. Thus, in the arginine biosynthesis pathway, ACDase subsequently catalyzes the hydrolysis of N-acetyl-L-citrulline to acetate and L-citrulline.	1.94339e-127
NZ_CP029686.1\|WP_003575996.1\|2664449_2665616_+\|hydroxymethylglutaryl-CoA-synthase	gnl\|CDD\|213655	TIGR01835, 3-hydroxy-3-methylglutaryl_CoA_synthase, 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade. This clade of hydroxymethylglutaryl-CoA (HMG-CoA) synthases is found in a limited spectrum of mostly gram-positive bacteria which make isopentenyl pyrophosphate (IPP) via the mevalonate pathway. This pathway is found primarily in eukaryotes and archaea, but the bacterial homologs are distinct, having aparrently diverged after being laterally transferred from an early eukaryote. HMG-CoA synthase is the first step in the pathway and joins acetyl-CoA with acetoacetyl-CoA with the release of one molecule of CoA. The Borellia sequence may have resulted from a separate lateral transfer event.	4.76524e-156
NZ_CP029686.1\|WP_003566067.1\|2656992_2657598_+\|ECF-transporter-S-component	gnl\|CDD\|227029	COG4684, COG4684, Predicted membrane protein [Function unknown].	7.14562e-17
NZ_CP029686.1\|WP_003566072.1\|2654462_2655215_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224026	COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only].	7.00008e-96
NZ_CP029686.1\|WP_003566058.1\|2660517_2661348_+\|sugar-phosphate-isomerase/epimerase	gnl\|CDD\|224007	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism].	2.188e-08
NZ_CP029686.1\|WP_003566070.1\|2655356_2655809_+\|SprT-family-protein	gnl\|CDD\|235290	PRK04351, PRK04351, SprT family protein.	5.42742e-83
NZ_CP029686.1\|WP_003566048.1\|2665939_2667694_+\|pyruvate-oxidase	gnl\|CDD\|213733	TIGR02720, Pyruvate_oxidase, pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name. [Energy metabolism, Aerobic].	0
NZ_CP029686.1\|WP_003566061.1\|2659806_2660370_+\|restriction-endonuclease	gnl\|CDD\|377369	pfam04471, Mrr_cat, Restriction endonuclease. Prokaryotic family found in type II restriction enzymes containing the hallmark (D/E)-(D/E)XK active site. Presence of catalytic residues implicates this region in the enzymatic cleavage of DNA.	1.30041e-36
NZ_CP029686.1\|WP_003566079.1\|2648859_2651520_+\|cation-translocating-P-type-ATPase	gnl\|CDD\|319781	cd02089, P-type_ATPase_Ca_prok, prokaryotic P-type Ca(2+)-ATPase similar to Synechococcus elongatus sp. strain PCC 7942 PacL and Listeria monocytogenes LMCA1. Ca(2+) transport ATPase is a plasma membrane protein which pumps Ca(2+) ion out of the cytoplasm. This prokaryotic subfamily includes the Ca(2+)-ATPase Synechococcus elongatus PacL, Listeria monocytogenes Ca(2+)-ATPase 1 (LMCA1) which has a low Ca(2+) affinity and a high pH optimum (pH about 9) and may remove Ca(2+) from the microorganism in environmental conditions when e.g. stressed by high Ca(2+) and alkaline pH, and the Bacillus subtilis putative P-type Ca(2+)-transport ATPase encoded by the yloB gene, which is expressed during sporulation. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NZ_CP029686.1\|WP_003566074.1\|2653570_2654470_+\|branched-chain-amino-acid-ABC-transporter-permease	gnl\|CDD\|226605	COG4120, COG4120, ABC-type uncharacterized transport system, permease component [General function prediction only].	4.77747e-94
NZ_CP029686.1\|WP_003566083.1\|2646347_2647175_+\|ammonia-dependent-NAD(+)-synthetase	gnl\|CDD\|234831	PRK00768, nadE, ammonia-dependent NAD(+) synthetase.	0
NZ_CP029686.1\|WP_003575994.1\|2663185_2664466_+\|hydroxymethylglutaryl-CoA-reductase,-degradative	gnl\|CDD\|153082	cd00644, HMG-CoA_reductase_classII, Class II hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR). Hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR), class II, prokaryotic enzyme is a homodimer. Class II enzymes are found primarily in prokaryotes and Archaeoglobus fulgidus and are soluble as they lack the membrane region. Enzymes catalyze the synthesis of coenzyme A and mevalonate in isoprenoid synthesis. Bacteria, such as Pseudomonas mevalonii, which rely solely on mevalonate for their carbon source, catalyze the reverse reaction, using an NAD-dependent HMGR to deacetylate mevalonate into 3-hydroxy-3-methylglutaryl-CoA. Human and bacterial HMGR differ in their active site architecture.	0

>NZ_CP029686.1|WP_003566068.1|2655801_2656266_-|GNAT-family-N-acetyltransferase
MLREAQFIDLGAIVHLYQQLTAEMATMAPETYRPLTSDNRQYFADYLQNDLARLFVTETAGTLSGFALVVLARTGDNAEFVPQHFAQLIDLYVIPAQRHQGLAKQLMDAVTAFAKSHDATFIQLNVLNANQTAQQVYAKAGFEPVSLIFQKPLN
>NZ_CP029686.1|WP_003566070.1|2655356_2655809_+|SprT-family-protein
MTDQELQARVEAISLKAFHQPFRHHAVFNNRLKTTGGRFHPADMNLDFNPKLFAVYPASVTDGIIKHELVHYHLYDHHRGYQHRDHDFKQLLTAVGGSRFAPPLPVNGHQYVYVCTHCGRQFVRRRHIDVRRYACGVCRGKLRLQKTLAS
>NZ_CP029686.1|WP_003566072.1|2654462_2655215_+|ATP-binding-cassette-domain-containing-protein
MAELTLTNVTVNIPVGTEVKTLLQDVNLTVAKGEFLTVLGNNGAGKSTLFNAITGDMPVSGGTITLADQTLNGKRPEQRARHIARVFQDPKMGTAPRMTVAENLLLASHRGQRLTLRSRGMTASKAALKTLAAKTGNGLADALDKPTEQLSGGQRQALSLLMATMRKPDLLLLDEHTAALDPHTSQAIMQLTNEIVSDQQLTCLMITHQVEDALRYGNRLIVLDAGKIVADFDQAKKAAMSRDDVLAFFS
>NZ_CP029686.1|WP_003566074.1|2653570_2654470_+|branched-chain-amino-acid-ABC-transporter-permease
MSIGVSAIGQGLLYGLIGLGLFLTFRVLDFPDMTVEGTFPFGAALAVSAITHGISPIVATLLATGAGMLAGLATGLLTTKGKIPVLLAGILVMTGLFSINLRIMGRANLSLLHQANLFQTAFLKDLPPYFNSVVIGVIVAVVVVGLLMLFLNTQLGQAFIAAGDNPSMARSLGIDPDHQMVLGLMVGNGLVGLAGGLLAQNNGYADVNMGIGIIVIGLAAIIIGEVVFGELTLSQRLVAVILGSILYRFVLLVVLALGFNADDLKLISAVVLAIAIMVPQIDHRLRLRRVLQKGVQAHG
>NZ_CP029686.1|WP_003566078.1|2651656_2652094_+|hypothetical-protein
MNKQQMKLANYGTTINAVVEATQDNQEKMAPLFEPLRKAIDENKLADYDLEAYQQTQTVFSEGTSNYEALLVKLQQVAAPARLLGPHHTLVRDFAAFTEACKAMTASLHADRQVDVAAFNAAEKAQDEAIQKFTKQIQKISVMLS
>NZ_CP029686.1|WP_003566079.1|2648859_2651520_+|cation-translocating-P-type-ATPase
MANKPPYALSSEAVLKQEQTSLTGLTKEAAQTRLNENGPNELAQAEKKGMLARFLDQFKDFMIIVLLVAALIAGFLLSEWADAGIILAVVLLNAVFGVFQESKAEEAIDALKEMSTPNAHVRRGDQVLTIPSSQLVLGDIVLLEAGDVVPADLRLVESANLKIEESALTGESVPVDKTTAPLDADDVGIGDRTNMAFMNSNITYGRGVGVVIATGMQTEVGRIAGMINSAEETNTPLQENLKSLGKTLTVMILVIAVIVFAVGIWRQAASLPEMFLTAVSLAVAAIPEGLPAIVTIILALGTQKMAKRHALVRKLPAVETLGSTDIIASDKTGTLTQNKMTVEKVYYDGQLNDASAGIHGGNPLMTIMNFANDTQVQDDGKLLGDPTETALVAYGKTQNYDVAKALTGEPRIAEVPFDSERKLMTTVHRRADGKLLVATKGAPDELLKRVTDLATGENTAPLSDSERDAILKANKDMATQALRVLGMAYKVIDTLPEKVDSDTVENHMIFAGLVGMIDPERPEAEAAVAEAKAAGIRPMMITGDHRDTAEAIAVRLGIIDQGDDDAVITGAELDQQSDDEFAKNVAKYSVYARVAPEHKVRIVNAWQKKGKVVAMTGDGVNDAPALKAADIGIGMGITGTEVSKGASDMVLADDNFATIVVAVEEGRKVFSNIQKAIQYLLSANLGEVLTLFMMTMLGWDLLAPVHILWINLVTDTFPAIALGVEPTEPGIMKQKPRGRKSNFFSGGVGPAVIWQGILEGLLTLGVYWIAITYPVHSGSAAIHADALTMAYATLGLIQLFHAFNVKSIHQSLFTVGAFRNKAFNWAILASFVLLAVTILVPGFNGLFHVTSLDWHQWITVLGAGVAMIVIVEIVKVFERARRKQRA
>NZ_CP029686.1|WP_003566081.1|2647394_2648552_+|serine-hydrolase
MSGKHRYIWLGVMLILCAVSIGAGTYLWQQNSRSAVNTKAKSAKTVTKVVRQDRGKSKEEILAMTLDRAATTTEGQPLEQELTNDKFIGSALIIKHGKVVFNNGVGDADTTTHRRNGPTTLFQIGSIQKAVTAVALAQLAASGKLSLDDPVGKYLTGIKTGDQVTLRMMVAMRSGFSLRRYQPTVMDDANIIQWSIANLTYLPQDNYAYQAVNYVLLAGVIEKVAGRSYEQQVKNNIFDRLNLKHTGFLPAMLTDPERAITYTGPAANPYQTAIGEPAVWYNRELGTGNVYTSTGDLYRLLRGIDTGKVLSLSTLKTLRNRNDGVYNAGIYNHADFYSTNGVVAGQMASTAISHDGQNAVILLSNYNSHALNLHDLAVHLFSELG
>NZ_CP029686.1|WP_003566083.1|2646347_2647175_+|ammonia-dependent-NAD(+)-synthetase
MRPLQAEIIKALGVQATIDPETEVRRSVDFLKAYLKKNTFLKTYVLGISGGQDSSLAGALTEKAMQEMRAETGDDAYQFIAVRLPYGEQADEADAMAAIDFMHADVVKRVNIKPSVDAMVAAVEADGSKISDFNKGNIKARMRMIAQYAIAGNNAGAVIGTDHAAEAVTGFYTKFGDGGADLTPLYRLDKRQGAALLKVLGAPAHLYEKAPTADLEDNRPALPDEVALGVKYKDIDDYLEGKDVSDQAAETIEKWYQKTAHKRHLPITVFDNFWK
>NZ_CP029686.1|WP_003566085.1|2645151_2646345_+|serine-hydrolase
MRASKRRSQHRWLILSLLVGLVVGIAAYASYDHFYLKPQIEAKEERTRRKYEIELNRHRAVEQRLQNETRTATSATDKLMQPVNQAEAKPFMKILEANHFSGTALMIRRGKIILNTGLGYADAESGRLNGPETLYQIGSIQKGLTAVLLMRLVEQGKVHLSDPISKYLTGIRTGKQVTLRMMLNMRSGLSLTRAQSASLSDAGIVRWSIANLNYGTVRYDYQPVNYVLLAGVIEKVTGRLYADLIQQEIFKKLKLTHSGFMPELFHESNQAFGYSGPINNPYAKRYTEPSVNYNRELGTGNIYTSAGDLYQIIKAVNQGKIISTASLKALRNLDNGQYTAGVYNFGGYTLTHGVVASQSAGTMIDTSGQNAVVLLANTDKITQGLIKNLYLNMIKGV
>NZ_CP029686.1|WP_003566087.1|2643684_2645148_+|nicotinate-phosphoribosyltransferase
MTTQLGEGLTLHTDFYELNMMNTFFEQGISERNAVFEVFFRDLPFGSGFAVFAGLEHVMDYLNHLKFSEDDLAYLQSQTDYSDAFIDYLRHLKFTCTVKSALEGDLVFNNEPIWQIEGPLAQAQLVETAVLNMINYQTLVATKAARIRSVAGADPLMEFGTRRAQETAAALWGTRAAYIGGFNATSNVLAGKEFGIPISGTHAHSLVQAYGNDYDAFKAYARSNKDVVFLVDTYDTLRSGVPAAIKVANEFKGKINFLGVRIDSGDMAFISKRVRQQLDDAGYESAKIYASNDLDENTIQNLKMQGAKIDIWGVGTRLITAYDQPALGAVFKLVSIEDAAGKMRDTIKLSNNAEKVSTPGKKQVWRITRQDDGKSEGDYVALADETIDTQRSLYMFHPNFPYINKTVKNFEAKPLLQTIYDKGQQVYHTPPLQEVQAYATRSTNALWDEYRRILNPQDYPVDLSQRVWDNKMDLIKAVKSAVADREE
>NZ_CP029686.1|WP_003566067.1|2656992_2657598_+|ECF-transporter-S-component
MTQRGKAYNIAIIGILGALIILQAYIPMVGYVQIFPAWPAISTIHLTVIIGGIVLGYGGGASLGLLWGLTSLIRAYTSATDPVTLLLFRNPIIAIVPRVMVGLVAAFIFHQLFKKKQTPLAQTVKMVFAGVVGALTNTLLVIGFTWLMFASKAAQIVPGADATNLGWLLMTALAINAVAEALLGGIVTPILGHALLRFRRK
>NZ_CP029686.1|WP_003566065.1|2657676_2658816_+|M20-family-metallopeptidase
MTEEEQVVDLLSAMVKIPSVAAKEGQVADLIETFLAPELKAGLIKRERISYAPGRDNLVLTIGNPNAQRWLGVDGHMDVVDPGNVNKWQFPPFSAHVEDGKLYGRGATDMKSGLAAAVVAFKQAAHEKLDHGIQLMATVGEEVDNDGARQLSAAGYGDRLTGLLVAEPGNSNVDAAERGIIDYTLTAHGKAAHSSRPDLGANAIHGLFAFANAALTATAPLQAKEDPILGHATHNIDIIHGGNQINSIPESAYLRGNIRTTMIADNDAFIAALKQAAKTTVPKGVRLSLSIDSVLGAAAASPDNDLIQLVQTARQRAGLNRGQVAYRTGITDAALFYHDGLDLAIYGPGNETSHETDEYVTLKDVFDSVKVFKDVFMNY
>NZ_CP029686.1|WP_003566063.1|2658875_2659694_-|aldose-1-epimerase
MQLSAKIFAKVGSERITQYSLVNDHQMTLRFLTFGARVQQVRLPNAAGDDPNLLLGFVTLEDYLHQPGYLGAFTGPLQAADAELAPGSWQNWNWAVKTSQETDLAITFTLTLPENADGQPGQRELSITHRLTNDNLWQIDMQVATTADLKIHPRLNLPWMLTADPAQTMLSAKLTADEHVTPVPKTARCETAQRYSLAAADWQLAYLSDASFTRIDSYAGINSENNFNGILGQPNVAVGFSPEMNQDALPWVLPAGTTWRHHAEFHLSSNAN
>NZ_CP029686.1|WP_003566061.1|2659806_2660370_+|restriction-endonuclease
MRTLLKKAYQLLWGLFILALAYSFWARSFLPRQLRQYGDPASFGIISLFVVINAIMLYHHHFRFRDLKMETVDIMEGEKFESFCAYLLKRNGFNHIQLTQASGDQGIDIIARKKGKTIGFQCKRYTGFVGNKAVQEVWAGHHFYQLDEAAVITNSEFSDSAIALADDLGVMLIDRKKLRRLMRRLPS
>NZ_CP029686.1|WP_003566058.1|2660517_2661348_+|sugar-phosphate-isomerase/epimerase
MLLGLKASTDQRQIRDRLQYHPDVFEFHLTENDFTEAGWSHFVQMAALVQSLVPTVVFHHPMRFRGQRNELAMNPTKYPTRYDFLMTSSVKLMNFAKKANATALIHGGYRVDTPGDYAGWTDVGKAQDVALARMIAFAQEAPGHVVFENSMSPIFRYGDPTFEDRLLRWHLPLAYDTSHTFIVLHGDNDRLMASLAHLRPLIRHYHLVDSMGQTHDSLPLGRGRIDWARVLPLLNQNASRIYEIGLKDQFDCREMIESHHYLESVAKRLAATKHPA
>NZ_CP029686.1|WP_003566056.1|2661348_2661648_-|hypothetical-protein
MRVTDLLALLADQNKNASVLLDTKPTPSRFDDFKLTTVNDQPQLVFQPNPERKAALRVWELQLLLNQPDLQQRFVYLADVDEPRALFGFVKRQIGLLLN
>NZ_CP029686.1|WP_003566054.1|2661992_2663174_+|acetyl-CoA-C-acyltransferase
MEEVVILSAKRTPIGKLGGDLAGASAVDLGVAAAQAAIKAARIDPALLNQAIFGNVMQAGSGQNVARQIGLKSGMATSSTAMTVNEVCGSGLKAVRLGQAAIQLGEADAVLVGGTESMSQVPYYAEAVRSGHKFGDTTLVDGLSRDGLNDAFSQQPMGITAENVATQFNVSRQEQDEFALRSHLRAAAAAAEGRFKSQIAPVTIAARHGDVIVDRDSAIRPDTSLAKLAQLPPVFEVGGTVTAGNASGINDGAAALILMAKSKAEQLGLHYLATVTGFAEVGIDPAIMGYAPKLAIDKILQATGGSIAAIDQIELNEAFASQSVAVARDLGLKDEQFNINGGALALGHPLGASGARILISLLYDLAERNQRQGIAALCVGGGIGIAMQIAMHV
>NZ_CP029686.1|WP_003575994.1|2663185_2664466_+|hydroxymethylglutaryl-CoA-reductase,-degradative
MKFYELSPEKRRDQLVQEGWLTTQDAALLAGTHSLPEVTGARLIENAIGEFPLPLGVARNLLVNGQLHQVPIADEEPSVIAAASNGARLATANGGVRTHVAAHRVVAEVVLTNLTDLVQARQTILAHQTDIQKVIAVAHPSMIQRGGGLDQLTVESLGAQFLKIRLTLDPQQAMGANYANTVAEAVAAAVTSWVDGDVLVSILTNAPTELVTAEVSLEPVSLATKAVSGDVIAKKIVQLSDLAFVDAERAVTHNKGILNGIIGAVLATGNDTRAVAASIGAFACASGRYQPLSRWYMDQGHLVGHLQLPLPMGAVGGAIGALPMAQVVRRLGGYQNLAIMQQVIAALGLVQNLAAMRALAGPGIQAGHMKLQANALAIAAGATETELPMLVNALRQGSMDLKHAQQYLTTIRLNKKVGQSKDENRD
>NZ_CP029686.1|WP_003575996.1|2664449_2665616_+|hydroxymethylglutaryl-CoA-synthase
MKIGIDAIAMDTPDFYVDLVKLAQVRGDDPDKYTIGIGQDEQAVPPSSQDIVTMGANAATKLLTPAIRASLGMVLVGTESGVDASKSAALFIHDLLALPEWVRAVELKEACYGGTAALMMARDYIAAHPDKTVLVIAADIARYGLATAGEVTQGAGAVAMLIKAEPHIMTIEDDSVYRSESIDDFWRPVYQDTAIAQGKYSTEQYLAFFQAIWSRYQTQRHHTASDFAAMTFHLPYTKMGKKALKLVLPDTDEATGERLQRRFEASTRYCRRVGNIYTGSLYLGLLSLLDNDTSLKAGDRIGLFSYGSGAVAEFFSGILQPDFAAQLHAANHAKMLADRQELTVPEYEAVFSDKVPYDPEDYRSDPTYYHGQFVLTGVIGQERQYQQR
>NZ_CP029686.1|WP_003566048.1|2665939_2667694_+|pyruvate-oxidase
MTEKINAADAMIKVLEDWGIHNIYGLPGGSFDSTMNALYNRRHTINYVQVRHEEVGALAAAGEAKVTGRIGATFGSAGPGAVHLLNGLYDAQYDNVPVLALVGQVPTAAMNTNYFQEMNENPMFADVSVYNRTAMTAEQLPHVVDEAIRQAYKHNGVAVVTIPKDLGWTQIDDNYVSSANLYQKPLLPDPDPDQVAAAWDILKDAKKPILYVGNGARGARDEIIAFSEKTHIPIITTALAKGIVPDDYKANMGSAGRVASKPGVEVARGADTVLFLGSDFPFQPYFIAPNAKYIQVDIDGSKFGRRHTVDLAVLADAKKFIKALSEKADQLPESAWYRAALANKENWREWMTSFEDDGSTPLRVEPIFKLINEMAEKDAIFQVDVGNVTINGMRYLKTNDDQVFTTSGWYATMGYALPAAIGAQAEFPDRQVWSISGDGGFAMVMQDILTQVKYHMPIINVVLTNESLGFIEAEQDDTQQPHSGVDLIDADYGKAAEALGAQGFEVHNLDELKAAFAKAKDRKGPVVIDVKISDLRPIPVEQLVLDKQTQDPAAVDAFVKKYHAESLIPFRQLLEDAEKPVTNA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP029686_2	2.2\|2238296\|30\|NZ_CP029686\|PILER-CR,CRISPRCasFinder,CRT	2238296-2238325	30	NZ_CP022955	Lactobacillus paracasei subsp. paracasei strain IBB3423 plasmid pLCAKO.1, complete sequence	5872-5901	2	0.933
NZ_CP029686_2	2.4\|2238428\|30\|NZ_CP029686\|PILER-CR,CRISPRCasFinder,CRT	2238428-2238457	30	MT773556	Myoviridae sp. isolate BML_4 genomic sequence	200957-200986	6	0.8
NZ_CP029686_2	2.5\|2238494\|30\|NZ_CP029686\|PILER-CR,CRISPRCasFinder,CRT	2238494-2238523	30	CP000662	Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence	787988-788017	6	0.8
NZ_CP029686_2	2.5\|2238494\|30\|NZ_CP029686\|PILER-CR,CRISPRCasFinder,CRT	2238494-2238523	30	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	170192-170221	7	0.767
NZ_CP029686_2	2.5\|2238494\|30\|NZ_CP029686\|PILER-CR,CRISPRCasFinder,CRT	2238494-2238523	30	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	1643071-1643100	7	0.767
NZ_CP029686_2	2.5\|2238494\|30\|NZ_CP029686\|PILER-CR,CRISPRCasFinder,CRT	2238494-2238523	30	MG757157	Gordonia phage Flapper, complete genome	3335-3364	7	0.767
NZ_CP029686_2	2.6\|2238560\|30\|NZ_CP029686\|PILER-CR,CRISPRCasFinder,CRT	2238560-2238589	30	MN693516	Marine virus AFVG_25M345, complete genome	20383-20412	7	0.767
NZ_CP029686_2	2.8\|2238692\|30\|NZ_CP029686\|PILER-CR,CRISPRCasFinder,CRT	2238692-2238721	30	NZ_CP018229	Rhizobium leguminosarum strain Vaf-108 plasmid unnamed1, complete sequence	347900-347929	7	0.767
NZ_CP029686_2	2.8\|2238692\|30\|NZ_CP029686\|PILER-CR,CRISPRCasFinder,CRT	2238692-2238721	30	NZ_CP016290	Rhizobium leguminosarum strain Vaf10 plasmid unnamed3, complete sequence	472321-472350	7	0.767
NZ_CP029686_2	2.11\|2238890\|30\|NZ_CP029686\|CRISPRCasFinder,CRT	2238890-2238919	30	NZ_CP049251	Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed4, complete sequence	110306-110335	7	0.767
NZ_CP029686_2	2.13\|2239022\|30\|NZ_CP029686\|CRISPRCasFinder,CRT,PILER-CR	2239022-2239051	30	NZ_CP034227	Lactobacillus agilis strain La3 plasmid pLa3_2, complete sequence	3216-3245	8	0.733
NZ_CP029686_2	2.22\|2239616\|30\|NZ_CP029686\|CRISPRCasFinder,CRT	2239616-2239645	30	NZ_CP016024	Ralstonia insidiosa strain ATCC 49129 plasmid pRI-1, complete sequence	227967-227996	8	0.733
NZ_CP029686_2	2.4\|2238428\|30\|NZ_CP029686\|PILER-CR,CRISPRCasFinder,CRT	2238428-2238457	30	MN694055	Marine virus AFVG_250M1074, complete genome	14036-14065	9	0.7
NZ_CP029686_2	2.4\|2238428\|30\|NZ_CP029686\|PILER-CR,CRISPRCasFinder,CRT	2238428-2238457	30	MN693650	Marine virus AFVG_250M1058, complete genome	13744-13773	9	0.7
NZ_CP029686_2	2.8\|2238692\|30\|NZ_CP029686\|PILER-CR,CRISPRCasFinder,CRT	2238692-2238721	30	NC_021920	Corynebacterium maris DSM 45190 plasmid pCmaris1, complete sequence	44607-44636	9	0.7
NZ_CP029686_2	2.10\|2238824\|30\|NZ_CP029686\|PILER-CR,CRISPRCasFinder,CRT	2238824-2238853	30	KY653117	Staphylococcus phage IME1323_01, complete genome	20139-20168	9	0.7
NZ_CP029686_2	2.13\|2239022\|30\|NZ_CP029686\|CRISPRCasFinder,CRT,PILER-CR	2239022-2239051	30	MN693950	Marine virus AFVG_250M300, complete genome	1356-1385	10	0.667

1. spacer 2.2|2238296|30|NZ_CP029686|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022955 (Lactobacillus paracasei subsp. paracasei strain IBB3423 plasmid pLCAKO.1, complete sequence) position: , mismatch: 2, identity: 0.933

tgagcgtttttctttcctcaggtggttggc	CRISPR spacer
tgagcgtttttctttctttaggtggttggc	Protospacer
****************.*.***********

2. spacer 2.4|2238428|30|NZ_CP029686|PILER-CR,CRISPRCasFinder,CRT matches to MT773556 (Myoviridae sp. isolate BML_4 genomic sequence) position: , mismatch: 6, identity: 0.8

cttaagttttgtcatcagcactg--accagcc	CRISPR spacer
attaagttttgttatcagaactgatactag--	Protospacer
 ***********.***** ****  **.**

3. spacer 2.5|2238494|30|NZ_CP029686|PILER-CR,CRISPRCasFinder,CRT matches to CP000662 (Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence) position: , mismatch: 6, identity: 0.8

cgagtcggcacggattcaacatgcggcaca	CRISPR spacer
caatccggcactggttcaacatgcggcacg	Protospacer
*.* .****** *.***************.

4. spacer 2.5|2238494|30|NZ_CP029686|PILER-CR,CRISPRCasFinder,CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 7, identity: 0.767

cgagtcggcacggattcaacatgcggcaca	CRISPR spacer
ccacggggcgcggattcgacatgcggcacg	Protospacer
* *   ***.*******.***********.

5. spacer 2.5|2238494|30|NZ_CP029686|PILER-CR,CRISPRCasFinder,CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 7, identity: 0.767

cgagtcggcacggattcaacatgcggcaca	CRISPR spacer
ccacggggcgcggattcgacatgcggcacg	Protospacer
* *   ***.*******.***********.

6. spacer 2.5|2238494|30|NZ_CP029686|PILER-CR,CRISPRCasFinder,CRT matches to MG757157 (Gordonia phage Flapper, complete genome) position: , mismatch: 7, identity: 0.767

cgagtcggcacggattcaacatgcggcaca	CRISPR spacer
catgtcggtacggattcaacgtgcgggtcg	Protospacer
*. *****.***********.*****  *.

7. spacer 2.6|2238560|30|NZ_CP029686|PILER-CR,CRISPRCasFinder,CRT matches to MN693516 (Marine virus AFVG_25M345, complete genome) position: , mismatch: 7, identity: 0.767

atacaaaaaaaatcatacagcctgcatcac-	CRISPR spacer
ttacaaaaaatatcttacagcctg-gttatg	Protospacer
 ********* *** ********* .*.*.

8. spacer 2.8|2238692|30|NZ_CP029686|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018229 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

ctaaacgttcgcgaacctcattcaagctaa	CRISPR spacer
cttcgacttcgcgaacatcattcaggctaa	Protospacer
**  .  ********* *******.*****

9. spacer 2.8|2238692|30|NZ_CP029686|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016290 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.767

ctaaacgttcgcgaacctcattcaagctaa	CRISPR spacer
cttcgacttcgcgaacatcattcaggctaa	Protospacer
**  .  ********* *******.*****

10. spacer 2.11|2238890|30|NZ_CP029686|CRISPRCasFinder,CRT matches to NZ_CP049251 (Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.767

ccctttcgccgccatctttgatcgcccacg	CRISPR spacer
cattttcgccgccatcgttcatcgccatct	Protospacer
* .************* ** ******  *

11. spacer 2.13|2239022|30|NZ_CP029686|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034227 (Lactobacillus agilis strain La3 plasmid pLa3_2, complete sequence) position: , mismatch: 8, identity: 0.733

aagccgatgatataaagaaagacgcccctt	CRISPR spacer
tatgagcggatataaaaaaagacgccccta	Protospacer
 *   *  ********.************

12. spacer 2.22|2239616|30|NZ_CP029686|CRISPRCasFinder,CRT matches to NZ_CP016024 (Ralstonia insidiosa strain ATCC 49129 plasmid pRI-1, complete sequence) position: , mismatch: 8, identity: 0.733

gacgatctcgcacatgctcagtgatatgcg	CRISPR spacer
ccgtttttcgcacatgctcagtggtatggg	Protospacer
     *.****************.**** *

13. spacer 2.4|2238428|30|NZ_CP029686|PILER-CR,CRISPRCasFinder,CRT matches to MN694055 (Marine virus AFVG_250M1074, complete genome) position: , mismatch: 9, identity: 0.7

cttaagttttgtcatcagcactgaccagcc	CRISPR spacer
tggacgtttggtcatcagcactgaccgatg	Protospacer
.  * **** ****************...

14. spacer 2.4|2238428|30|NZ_CP029686|PILER-CR,CRISPRCasFinder,CRT matches to MN693650 (Marine virus AFVG_250M1058, complete genome) position: , mismatch: 9, identity: 0.7

cttaagttttgtcatcagcactgaccagcc	CRISPR spacer
tggacgtgttgtcatcagcactgaccgatg	Protospacer
.  * ** ******************...

15. spacer 2.8|2238692|30|NZ_CP029686|PILER-CR,CRISPRCasFinder,CRT matches to NC_021920 (Corynebacterium maris DSM 45190 plasmid pCmaris1, complete sequence) position: , mismatch: 9, identity: 0.7

ctaaacgttcgcgaacctcattcaagctaa	CRISPR spacer
agccgcgttcgcgaacctcactcgagcttc	Protospacer
    .***************.**.****

16. spacer 2.10|2238824|30|NZ_CP029686|PILER-CR,CRISPRCasFinder,CRT matches to KY653117 (Staphylococcus phage IME1323_01, complete genome) position: , mismatch: 9, identity: 0.7

gtgttagacttagatgtggatgttgccccg	CRISPR spacer
aatgtagacttagatgaggatgtagccaaa	Protospacer
.   ************ ****** ***  .

17. spacer 2.13|2239022|30|NZ_CP029686|CRISPRCasFinder,CRT,PILER-CR matches to MN693950 (Marine virus AFVG_250M300, complete genome) position: , mismatch: 10, identity: 0.667

aagccgatgatataaagaaagacgcccctt	CRISPR spacer
cagccgatgataaaaagaaagaaaaagaag	Protospacer
 *********** ********* .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

532206 : 541465

Streptococcus_phage(33.33%)

integrase

attL 526287:526300|attR 548588:548601

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
526287:526300	attL	NA	NA	NA	NA
WP_003564258.1\|532206_532704_+\|integrase	tyrosine-type recombinase/integrase	U5U4L5	Lactobacillus_phage	2.2e-59	87.9
WP_003564255.1\|533108_533699_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	1.1e-52	52.3
WP_003564253.1\|533815_534271_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_003564251.1\|534656_535604_-	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	9.2e-54	40.7
WP_003564250.1\|535608_536637_-	uridine diphosphate-N-acetylglucosamine-binding protein YvcK	A1IMD5	Streptococcus_phage	2.3e-90	51.2
WP_003564248.1\|536633_537521_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	1.1e-08	31.4
WP_003564246.1\|537683_538223_-	DUF308 domain-containing protein	NA	NA	NA	NA
WP_110344262.1\|538573_541465_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	5.4e-307	56.1
548588:548601	attR	NA	NA	NA	NA

DBSCAN-SWA_2

940384 : 951092

Lactobacillus_phage(90.0%)

integrase

attL 947032:947046|attR 954971:954985

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_019909842.1\|940384_941209_-	ATP-binding protein	A0A0P0I3L9	Lactobacillus_phage	3.0e-117	75.5
WP_110344322.1\|941223_941973_-	DnaD domain protein	A0A0N7IRA7	Lactobacillus_phage	4.0e-36	56.9
WP_019916966.1\|941965_942280_-	hypothetical protein	NA	NA	NA	NA
WP_110344323.1\|942356_942560_-	hypothetical protein	NA	NA	NA	NA
WP_110344324.1\|942644_943001_-	DUF771 domain-containing protein	U5U4L9	Lactobacillus_phage	5.9e-62	96.6
WP_045137041.1\|943066_943318_+	DUF1883 domain-containing protein	NA	NA	NA	NA
WP_110344326.1\|943512_944040_-	hypothetical protein	A0A2H4J505	uncultured_Caudovirales_phage	3.6e-15	41.7
WP_110344327.1\|945133_945373_+	hypothetical protein	NA	NA	NA	NA
WP_110344328.1\|945379_945613_-	hypothetical protein	NA	NA	NA	NA
WP_110344329.1\|945613_945826_-	helix-turn-helix transcriptional regulator	A0A1B0YC38	Lactobacillus_phage	1.6e-30	95.7
WP_110344330.1\|946083_946410_+	helix-turn-helix transcriptional regulator	A0A1B0Y3N1	Lactobacillus_phage	3.2e-54	97.2
WP_110344331.1\|946406_946811_+	ImmA/IrrE family metallo-endopeptidase	A0A1B0Y2S4	Lactobacillus_phage	2.4e-72	94.0
WP_110344332.1\|946883_947663_+	ion transporter	A0A1B0Y2S3	Lactobacillus_phage	3.2e-105	91.5
947032:947046	attL	NA	NA	NA	NA
WP_162596394.1\|948054_948402_+	SHOCT domain-containing protein	NA	NA	NA	NA
WP_110344334.1\|948504_948693_+	hypothetical protein	NA	NA	NA	NA
WP_110344335.1\|948856_949138_+	hypothetical protein	A0A0P0HRW5	Lactobacillus_phage	2.1e-22	53.8
WP_110344336.1\|949160_949496_+	DUF1827 family protein	NA	NA	NA	NA
WP_110344337.1\|949550_949814_+	hypothetical protein	NA	NA	NA	NA
WP_110344338.1\|949922_951092_+\|integrase	site-specific integrase	Q6J1W6	Lactobacillus_phage	1.7e-211	94.3
954971:954985	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1417754 : 1451853

Streptococcus_phage(40.0%)

protease,bacteriocin,transposase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_094515892.1\|1417754_1418633_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_003562610.1\|1418729_1419389_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_003562608.1\|1419437_1420022_-	DNA-binding ferritin-like protein	NA	NA	NA	NA
WP_003562606.1\|1420169_1420397_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA
WP_003562604.1\|1420416_1422273_-	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	9.8e-68	33.2
WP_003562602.1\|1422309_1422495_+	hypothetical protein	NA	NA	NA	NA
WP_003659053.1\|1422618_1422840_+	hypothetical protein	NA	NA	NA	NA
WP_110344362.1\|1422905_1423559_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_003562598.1\|1424179_1425433_+\|holin	betaine/proline/choline family ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	1.5e-14	43.0
WP_003568628.1\|1425435_1426065_+	ABC transporter permease	NA	NA	NA	NA
WP_003562594.1\|1426076_1427006_+	osmoprotectant ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003562592.1\|1427005_1427668_+	ABC transporter permease	NA	NA	NA	NA
WP_003562589.1\|1427881_1428142_+	hypothetical protein	NA	NA	NA	NA
WP_003562586.1\|1428392_1428995_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_003568624.1\|1428991_1432303_+	MMPL family transporter	NA	NA	NA	NA
WP_003582875.1\|1432483_1432807_+	hypothetical protein	NA	NA	NA	NA
WP_003562582.1\|1432984_1434358_+	MFS transporter	NA	NA	NA	NA
WP_003562580.1\|1434772_1436293_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	4.1e-11	30.3
WP_003562578.1\|1436385_1437261_+	Rgg/GadR/MutR family transcriptional regulator	A0A1X9I6E0	Streptococcus_phage	2.3e-11	26.6
WP_003562576.1\|1437449_1437770_-	hypothetical protein	NA	NA	NA	NA
WP_003562575.1\|1438467_1439160_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_003562571.1\|1439557_1440208_+	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA
WP_003562562.1\|1440553_1441429_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_003562560.1\|1441775_1441991_+	hypothetical protein	NA	NA	NA	NA
WP_003659037.1\|1442343_1442634_+	hypothetical protein	NA	NA	NA	NA
WP_003562558.1\|1442871_1443201_-	AzlD domain-containing protein	NA	NA	NA	NA
WP_003562555.1\|1443187_1443898_-	AzlC family ABC transporter permease	NA	NA	NA	NA
WP_003568611.1\|1444231_1444570_-	hypothetical protein	NA	NA	NA	NA
WP_003659032.1\|1444767_1445241_-	hypothetical protein	NA	NA	NA	NA
WP_003562550.1\|1445598_1446210_+	hypothetical protein	NA	NA	NA	NA
WP_003562548.1\|1446341_1446530_-	hypothetical protein	NA	NA	NA	NA
WP_003562546.1\|1446698_1447010_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_003562544.1\|1447059_1447695_-	hypothetical protein	NA	NA	NA	NA
WP_003562542.1\|1447889_1449332_-	C69 family dipeptidase	NA	NA	NA	NA
WP_003562540.1\|1449572_1449932_+	hypothetical protein	NA	NA	NA	NA
WP_003562527.1\|1450007_1450352_+	hypothetical protein	NA	NA	NA	NA
WP_020751650.1\|1450608_1451853_-\|transposase	ISL3 family transposase	Q6V7R1	Burkholderia_virus	7.4e-11	23.0

DBSCAN-SWA_4

1469917 : 1533792

Lactobacillus_phage(20.0%)

protease,tRNA,head,portal,terminase,tail,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003568480.1\|1469917_1470775_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_003568478.1\|1471053_1471356_+	hypothetical protein	NA	NA	NA	NA
WP_003659007.1\|1471568_1471964_+	hypothetical protein	NA	NA	NA	NA
WP_003572821.1\|1472360_1472954_+	DUF1211 domain-containing protein	NA	NA	NA	NA
WP_003568474.1\|1473026_1473221_-	hypothetical protein	NA	NA	NA	NA
WP_003568540.1\|1473247_1474267_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_003568469.1\|1474259_1475738_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_003568467.1\|1476179_1476416_-	30S ribosomal protein S18	NA	NA	NA	NA
WP_003568462.1\|1476502_1477099_-	single-stranded DNA-binding protein	A0A2D1GPB7	Lactobacillus_phage	7.1e-52	58.1
WP_003568460.1\|1477129_1477426_-	30S ribosomal protein S6	NA	NA	NA	NA
WP_003568458.1\|1477553_1477985_-	single-stranded DNA-binding protein	A0A2I2MUI5	uncultured_Caudovirales_phage	1.3e-26	46.9
WP_003568456.1\|1478167_1478872_+	deoxyribose-phosphate aldolase	NA	NA	NA	NA
WP_003581640.1\|1478976_1481598_-	DNA gyrase subunit A	A0A172JHV7	Bacillus_phage	2.9e-113	33.5
WP_003568453.1\|1481659_1483621_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	G3M9Z3	Bacillus_virus	4.3e-146	46.6
WP_003568451.1\|1483873_1484989_-	DNA replication/repair protein RecF	NA	NA	NA	NA
WP_003568449.1\|1484985_1485198_-	S4 domain-containing protein YaaA	NA	NA	NA	NA
WP_003568447.1\|1485775_1486915_-	DNA polymerase III subunit beta	D0R7I4	Paenibacillus_phage	5.0e-14	33.1
WP_003568444.1\|1487087_1488437_-	chromosomal replication initiator protein DnaA	NA	NA	NA	NA
WP_003568442.1\|1489357_1489498_+	50S ribosomal protein L34	NA	NA	NA	NA
WP_003658992.1\|1489826_1490183_+	ribonuclease P protein component	NA	NA	NA	NA
WP_003568431.1\|1490327_1491164_+	membrane protein insertase YidC	NA	NA	NA	NA
WP_003568429.1\|1491181_1491946_+	protein jag	NA	NA	NA	NA
WP_003568424.1\|1492458_1493847_+\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA	NA	NA	NA
WP_003568422.1\|1493888_1495790_+\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA	NA	NA	NA
WP_003568420.1\|1496052_1496262_+	hypothetical protein	NA	NA	NA	NA
WP_003568418.1\|1496423_1497188_+	threonine/serine exporter family protein	NA	NA	NA	NA
WP_003568415.1\|1497189_1497678_+	threonine/serine exporter family protein	NA	NA	NA	NA
WP_110344363.1\|1497694_1498873_+	amidohydrolase	NA	NA	NA	NA
WP_003568411.1\|1499016_1500102_-	iron-containing alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_013246158.1\|1500825_1506786_+	leucine-rich repeat protein	NA	NA	NA	NA
WP_003571997.1\|1506942_1508133_-	ABC transporter permease	NA	NA	NA	NA
WP_003568404.1\|1508119_1508809_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.6e-37	39.3
WP_003568402.1\|1508801_1509866_-	transporter	NA	NA	NA	NA
WP_003568400.1\|1510436_1510613_-	hypothetical protein	NA	NA	NA	NA
WP_003568398.1\|1510623_1510884_-	hypothetical protein	NA	NA	NA	NA
WP_003568396.1\|1511226_1512012_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_003571992.1\|1512302_1513013_-	glucosamine-6-phosphate deaminase	NA	NA	NA	NA
WP_003568392.1\|1513414_1515241_+	PTS mannitol transporter subunit IICBA	NA	NA	NA	NA
WP_003568390.1\|1515277_1517335_+	HTH domain-containing protein	NA	NA	NA	NA
WP_003658978.1\|1517339_1517783_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_110344364.1\|1517786_1518941_+	mannitol-1-phosphate 5-dehydrogenase	NA	NA	NA	NA
WP_003571988.1\|1519058_1520015_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_110344365.1\|1520111_1521041_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_003568380.1\|1521240_1522161_+	ribose-phosphate pyrophosphokinase	A0A1V0SHF7	Hokovirus	1.6e-42	32.9
WP_003568377.1\|1522845_1523214_+	large-conductance mechanosensitive channel protein MscL	NA	NA	NA	NA
WP_003568375.1\|1523325_1523574_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_003568371.1\|1523589_1523730_+	hypothetical protein	NA	NA	NA	NA
WP_003571983.1\|1524605_1524947_-\|head	phage head closure protein	I7AUE6	Enterococcus_phage	5.5e-09	39.7
WP_003571981.1\|1524930_1525221_-\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_110344366.1\|1525282_1526824_-\|capsid	phage major capsid protein	B8R651	Lactobacillus_phage	2.1e-39	25.5
WP_003571978.1\|1526810_1527995_-\|portal	phage portal protein	A0A2H4J5A4	uncultured_Caudovirales_phage	1.5e-61	35.0
WP_003571976.1\|1527999_1528179_-	hypothetical protein	NA	NA	NA	NA
WP_110344367.1\|1528144_1529848_-\|terminase	terminase large subunit	E9LUI0	Lactobacillus_phage	2.5e-118	39.9
WP_003571972.1\|1529844_1530315_-\|terminase	phage terminase small subunit P27 family	M1PKP2	Streptococcus_phage	1.9e-07	29.3
WP_191984568.1\|1530439_1530814_-	HNH endonuclease	D2JLE2	Staphylococcus_phage	1.6e-09	38.0
WP_003571970.1\|1530889_1531060_-	hypothetical protein	NA	NA	NA	NA
WP_003571968.1\|1531380_1532976_-	hypothetical protein	A0A0M4RE09	Enterococcus_phage	2.6e-40	31.3
WP_032774359.1\|1532979_1533792_-	bifunctional DNA primase/polymerase	Q854C1	Mycobacterium_phage	6.7e-13	32.5

DBSCAN-SWA_5

1983534 : 2106536

115

Staphylococcus_phage(15.0%)

protease,transposase,bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013245374.1\|1983534_1984779_+\|transposase	ISL3 family transposase	Q6V7R1	Burkholderia_virus	2.0e-11	22.4
WP_003567469.1\|1985374_1986325_+	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	1.3e-12	25.4
WP_003571452.1\|1986321_1987092_+	ABC-2 family transporter protein	NA	NA	NA	NA
WP_003567464.1\|1987095_1987875_+	ABC-2 family transporter protein	NA	NA	NA	NA
WP_003571451.1\|1988169_1988985_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_003567460.1\|1988981_1989683_+	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	9.6e-32	39.8
WP_003567458.1\|1989679_1990912_+	acyltransferase	NA	NA	NA	NA
WP_003567456.1\|1990868_1992401_+	AMP-binding protein	A0A1V0SBX8	Catovirus	7.5e-13	25.6
WP_003567455.1\|1992390_1993365_+	aliphatic sulfonate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003567453.1\|1993744_1994548_-	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA
WP_003567451.1\|1994544_1995327_-	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA
WP_003567449.1\|1995326_1996100_-	phosphonate ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.6e-24	38.3
WP_003567445.1\|1997487_1999743_-	HAD-IC family P-type ATPase	A0A1J0FA34	Only_Syngen_Nebraska_virus	1.5e-38	23.1
WP_079322958.1\|2001087_2001384_+\|transposase	transposase	NA	NA	NA	NA
WP_110344393.1\|2001380_2002244_+\|transposase	IS3 family transposase	Q6J1X2	Lactobacillus_phage	1.2e-23	30.1
WP_003659617.1\|2002671_2002959_+	hypothetical protein	NA	NA	NA	NA
WP_003567441.1\|2003549_2003960_+	CrcB family protein	NA	NA	NA	NA
WP_003567439.1\|2003953_2004310_+	CrcB family protein	NA	NA	NA	NA
WP_003567437.1\|2004692_2004857_-	hypothetical protein	NA	NA	NA	NA
WP_003567435.1\|2006054_2007242_+	hypothetical protein	NA	NA	NA	NA
WP_110344394.1\|2007416_2009795_+	SEC10/PgrA surface exclusion domain-containing protein	NA	NA	NA	NA
WP_003567431.1\|2010399_2010549_-	hypothetical protein	NA	NA	NA	NA
WP_110344395.1\|2010790_2011693_-	zinc ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003567426.1\|2011843_2013679_-	membrane protein	NA	NA	NA	NA
WP_003567424.1\|2013941_2014466_+	hypothetical protein	NA	NA	NA	NA
WP_003567423.1\|2014622_2015255_+	NUDIX hydrolase N-terminal domain-containing protein	NA	NA	NA	NA
WP_003567422.1\|2015372_2016014_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_003567420.1\|2016253_2017171_-	zinc ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003567418.1\|2017371_2017491_+	putative metal homeostasis protein	NA	NA	NA	NA
WP_003567416.1\|2017579_2017849_+	30S ribosomal protein S14	NA	NA	NA	NA
WP_003571433.1\|2018049_2019516_+	aldehyde dehydrogenase	NA	NA	NA	NA
WP_003567413.1\|2019791_2020535_+	metal ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.1e-12	25.9
WP_003567411.1\|2020531_2021428_+	metal ABC transporter permease	NA	NA	NA	NA
WP_003567408.1\|2021424_2022366_+	zinc ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003567405.1\|2022486_2022819_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003567403.1\|2022839_2023478_-	cation transporter	NA	NA	NA	NA
WP_003567401.1\|2023606_2023798_-	hypothetical protein	NA	NA	NA	NA
WP_003567398.1\|2024043_2025573_+	multicopper oxidase domain-containing protein	NA	NA	NA	NA
WP_003567396.1\|2025612_2026986_+	MFS transporter	NA	NA	NA	NA
WP_003567394.1\|2027139_2027505_-	hypothetical protein	NA	NA	NA	NA
WP_003567392.1\|2027804_2030522_-	HAD-IC family P-type ATPase	M1HJQ2	Paramecium_bursaria_Chlorella_virus	4.1e-62	28.7
WP_003567390.1\|2030909_2032517_+	Nramp family divalent metal transporter	NA	NA	NA	NA
WP_003567386.1\|2032808_2033567_+	hypothetical protein	NA	NA	NA	NA
WP_003567384.1\|2033699_2035076_+	class II fumarate hydratase	NA	NA	NA	NA
WP_110344396.1\|2035337_2036501_-	NADH-dependent flavin oxidoreductase	NA	NA	NA	NA
WP_003567380.1\|2036526_2037261_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_003567378.1\|2037465_2038419_+	aldo/keto reductase	A0A1V0SDE7	Indivirus	6.3e-10	24.6
WP_003567376.1\|2038690_2038924_+\|bacteriocin	Blp family class II bacteriocin	NA	NA	NA	NA
WP_003567374.1\|2038920_2039136_+	hypothetical protein	NA	NA	NA	NA
WP_003659595.1\|2039271_2039580_+	hypothetical protein	NA	NA	NA	NA
WP_003567372.1\|2039850_2040447_+	sugar O-acetyltransferase	NA	NA	NA	NA
WP_003571419.1\|2040565_2040901_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_003567367.1\|2041213_2041405_+	hypothetical protein	NA	NA	NA	NA
WP_003567365.1\|2041656_2041989_+	hypothetical protein	NA	NA	NA	NA
WP_003567363.1\|2042545_2043358_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_110344397.1\|2044158_2044383_-	hypothetical protein	NA	NA	NA	NA
WP_003567358.1\|2044704_2044893_+\|bacteriocin	ComC/BlpC family leader-containing pheromone/bacteriocin	NA	NA	NA	NA
WP_032675994.1\|2044927_2045101_+\|bacteriocin	bacteriocin	NA	NA	NA	NA
WP_003567354.1\|2045360_2045600_-	hypothetical protein	NA	NA	NA	NA
WP_003659579.1\|2046146_2046344_+	hypothetical protein	NA	NA	NA	NA
WP_003567351.1\|2046705_2047512_-	response regulator transcription factor	NA	NA	NA	NA
WP_003567349.1\|2047516_2048815_-	GHKL domain-containing protein	NA	NA	NA	NA
WP_003571414.1\|2049004_2049142_+	hypothetical protein	NA	NA	NA	NA
WP_003567347.1\|2049607_2051800_+	peptide cleavage/export ABC transporter	W8CYL7	Bacillus_phage	8.1e-37	26.7
WP_003567343.1\|2051810_2053190_+\|bacteriocin	bacteriocin secretion accessory protein	NA	NA	NA	NA
WP_003567340.1\|2053363_2053714_+	hypothetical protein	NA	NA	NA	NA
WP_003580849.1\|2053786_2054098_+	hypothetical protein	NA	NA	NA	NA
WP_003567335.1\|2054403_2055759_+	threonine/serine exporter family protein	NA	NA	NA	NA
WP_003567333.1\|2055860_2056157_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_003567331.1\|2056348_2056633_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_003567328.1\|2056656_2056935_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_003567326.1\|2056979_2057768_-	hypothetical protein	NA	NA	NA	NA
WP_003567324.1\|2057820_2058609_-	hypothetical protein	NA	NA	NA	NA
WP_003567322.1\|2058605_2058935_-	PadR family transcriptional regulator	NA	NA	NA	NA
WP_003659566.1\|2059950_2061006_-	DUF2974 domain-containing protein	NA	NA	NA	NA
WP_003567314.1\|2061214_2062411_+	DUF2075 domain-containing protein	NA	NA	NA	NA
WP_003567312.1\|2062505_2063063_+	hypothetical protein	NA	NA	NA	NA
WP_003571401.1\|2063340_2066346_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
WP_003571400.1\|2066347_2067670_+	hypothetical protein	NA	NA	NA	NA
WP_003571398.1\|2067666_2069226_+	SpaH/EbpB family LPXTG-anchored major pilin	NA	NA	NA	NA
WP_003567303.1\|2069232_2070060_+	class C sortase	NA	NA	NA	NA
WP_003567302.1\|2070649_2071873_+	hypothetical protein	NA	NA	NA	NA
WP_003571396.1\|2072061_2072598_+	hypothetical protein	NA	NA	NA	NA
WP_003567298.1\|2072851_2073046_+	hypothetical protein	NA	NA	NA	NA
WP_003567296.1\|2073362_2074196_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	2.1e-46	42.4
WP_003567294.1\|2074284_2075541_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	1.6e-98	56.8
WP_003567292.1\|2075619_2076852_-	MFS transporter	NA	NA	NA	NA
WP_003567290.1\|2077179_2077431_+	hypothetical protein	NA	NA	NA	NA
WP_003567288.1\|2077655_2077862_+	hypothetical protein	NA	NA	NA	NA
WP_003567286.1\|2077932_2078190_+	hypothetical protein	NA	NA	NA	NA
WP_003567284.1\|2078322_2078529_+	CsbD family protein	NA	NA	NA	NA
WP_003571392.1\|2078716_2079832_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA
WP_003567280.1\|2080022_2080307_-	chromosome partitioning protein ParB	NA	NA	NA	NA
WP_003567279.1\|2080320_2081442_-	low temperature requirement protein A	NA	NA	NA	NA
WP_003567277.1\|2081950_2082622_+	2,3-diphosphoglycerate-dependent phosphoglycerate mutase	NA	NA	NA	NA
WP_003567275.1\|2083122_2083746_+	CBS domain-containing protein	NA	NA	NA	NA
WP_032774271.1\|2083907_2086538_+	pyruvate, phosphate dikinase	H8YJB7	Vibrio_phage	1.4e-88	40.2
WP_003567271.1\|2086694_2088749_-	potassium transporter Kup	M1IAJ4	Acanthocystis_turfacea_Chlorella_virus	9.5e-64	33.3
WP_003567269.1\|2088910_2089789_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	1.2e-12	26.4
WP_003576229.1\|2089851_2091048_-	hypothetical protein	NA	NA	NA	NA
WP_003567265.1\|2091044_2092145_-	hypothetical protein	NA	NA	NA	NA
WP_003571383.1\|2092372_2093719_-	C1 family peptidase	A0A2H4UTL8	Bodo_saltans_virus	6.9e-47	29.8
WP_003571381.1\|2094041_2095361_-	C1 family peptidase	R4TV59	Phaeocystis_globosa_virus	9.2e-60	34.5
WP_003567260.1\|2095605_2095983_+	DUF805 domain-containing protein	NA	NA	NA	NA
WP_003567258.1\|2096099_2096390_-	N-acetyltransferase	NA	NA	NA	NA
WP_003567256.1\|2096610_2097153_+	dUTP diphosphatase	J9PV85	Bacillus_phage	8.1e-39	48.6
WP_003567254.1\|2097169_2098534_+	DNA repair protein RadA	NA	NA	NA	NA
WP_003567252.1\|2098555_2099671_+	PIN/TRAM domain-containing protein	NA	NA	NA	NA
WP_003567250.1\|2099773_2100670_-	Rgg/GadR/MutR family transcriptional regulator	NA	NA	NA	NA
WP_003567248.1\|2100853_2101741_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.9e-35	40.5
WP_003567246.1\|2101758_2102535_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_003567244.1\|2102851_2104123_+	MucBP domain-containing protein	NA	NA	NA	NA
WP_003567242.1\|2104286_2104661_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_003567240.1\|2104667_2105684_+	hypothetical protein	NA	NA	NA	NA
WP_003567237.1\|2105696_2106536_+\|protease	YhfC family intramembrane metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_6

2489338 : 2549326

Lactobacillus_phage(68.63%)

protease,transposase,head,portal,terminase,integrase,holin,tail,capsid

attL 2491971:2491996|attR 2537333:2537358

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003566294.1\|2489338_2490265_+	type I pantothenate kinase	A0A1B1ISL9	uncultured_Mediterranean_phage	4.1e-30	32.9
WP_003566292.1\|2490437_2491991_+	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	1.8e-14	28.4
2491971:2491996	attL	NA	NA	NA	NA
WP_110344415.1\|2492155_2493319_-\|integrase	tyrosine-type recombinase/integrase	A0A1X9I5C3	Streptococcus_phage	5.6e-45	31.5
WP_110344416.1\|2493696_2494959_-	hypothetical protein	A0A141E0C6	Streptococcus_phage	3.5e-16	24.6
WP_110344417.1\|2495020_2495224_-	hypothetical protein	A0A0P0IQK8	Lactobacillus_phage	3.5e-27	85.1
WP_110344418.1\|2495248_2495674_-	pyridoxamine 5'-phosphate oxidase family protein	A0A0P0I7K6	Lactobacillus_phage	6.6e-60	84.4
WP_110344419.1\|2495736_2496270_-	biotin transporter BioY	NA	NA	NA	NA
WP_110344420.1\|2496421_2497123_-	DUF3862 domain-containing protein	A9D9J1	Lactobacillus_prophage	3.3e-24	38.7
WP_110344421.1\|2497215_2497566_-	hypothetical protein	A0A1B0Y4P2	Lactobacillus_phage	5.8e-54	94.0
WP_110344422.1\|2497650_2498334_-	hypothetical protein	NA	NA	NA	NA
WP_110344423.1\|2498390_2498813_-	ImmA/IrrE family metallo-endopeptidase	A0A0P0IJN5	Lactobacillus_phage	1.3e-71	91.3
WP_003658003.1\|2498802_2499141_-	helix-turn-helix transcriptional regulator	A0A0P0IZG9	Lactobacillus_phage	1.3e-55	98.2
WP_110344424.1\|2499274_2499517_+	helix-turn-helix transcriptional regulator	A0A0P0HRP5	Lactobacillus_phage	2.3e-33	93.8
WP_004562013.1\|2499513_2499672_+	hypothetical protein	NA	NA	NA	NA
WP_110344425.1\|2499729_2500236_+	hypothetical protein	NA	NA	NA	NA
WP_110344426.1\|2500241_2500451_+	hypothetical protein	NA	NA	NA	NA
WP_110344560.1\|2500694_2501102_+	hypothetical protein	A0A0P0IXE5	Lactobacillus_phage	5.5e-72	95.6
WP_110344428.1\|2501114_2501774_+	ERF family protein	A0A0S2MYH3	Enterococcus_phage	4.6e-12	33.7
WP_110344429.1\|2501770_2502202_+	single-stranded DNA-binding protein	A0A2D1GPB7	Lactobacillus_phage	6.9e-49	66.2
WP_162596389.1\|2503155_2503311_+	hypothetical protein	NA	NA	NA	NA
WP_032790936.1\|2503307_2503532_-	hypothetical protein	NA	NA	NA	NA
WP_004562022.1\|2503647_2503863_+	helix-turn-helix transcriptional regulator	A0A0P0IJY1	Lactobacillus_phage	1.3e-32	100.0
WP_110344430.1\|2503859_2504309_+	hypothetical protein	B4XYT0	Lactobacillus_phage	2.8e-69	93.9
WP_110344431.1\|2504311_2504695_+	DUF1064 domain-containing protein	A0A0P0IJU5	Lactobacillus_phage	2.1e-65	95.3
WP_110344432.1\|2504706_2505417_+	N-6 DNA methylase	A8YQM7	Lactobacillus_phage	6.3e-124	96.5
WP_110344433.1\|2505403_2506327_+\|integrase	site-specific integrase	A8ATM2	Listeria_phage	2.4e-67	42.4
WP_110344434.1\|2506337_2506910_+	hypothetical protein	NA	NA	NA	NA
WP_110344435.1\|2507046_2507550_+	DUF1642 domain-containing protein	Q8LTB6	Lactobacillus_phage	4.9e-54	68.0
WP_110344436.1\|2507539_2507752_+	hypothetical protein	NA	NA	NA	NA
WP_110344437.1\|2507744_2508017_+	hypothetical protein	A0A2D1GPA3	Lactobacillus_phage	4.4e-33	77.8
WP_110344438.1\|2508019_2508220_+	hypothetical protein	NA	NA	NA	NA
WP_003658047.1\|2508212_2508419_+	hypothetical protein	B4XYT6	Lactobacillus_phage	1.5e-33	98.5
WP_110344439.1\|2508415_2508814_+	hypothetical protein	C1KFT5	Lactobacillus_virus	2.1e-20	44.9
WP_110344440.1\|2508810_2509227_+	hypothetical protein	C1KFT7	Lactobacillus_virus	4.5e-37	56.5
WP_110344441.1\|2509219_2509507_+	hypothetical protein	Q8LTA8	Lactobacillus_phage	3.7e-51	95.8
WP_110344442.1\|2509576_2509849_+	hypothetical protein	NA	NA	NA	NA
WP_162596390.1\|2510163_2510622_+	hypothetical protein	NA	NA	NA	NA
WP_162596391.1\|2511274_2511916_+	hypothetical protein	NA	NA	NA	NA
WP_110344444.1\|2512023_2513172_+	hypothetical protein	A0A0P0I3G0	Lactobacillus_phage	9.6e-215	95.5
WP_164507425.1\|2513181_2513319_+	hypothetical protein	NA	NA	NA	NA
WP_110344445.1\|2513318_2513969_+	helix-turn-helix domain-containing protein	A0A1S5SAA7	Streptococcus_phage	4.5e-44	48.9
WP_110344446.1\|2513946_2515302_+\|terminase	PBSX family phage terminase large subunit	A4L7R3	Lactococcus_phage	1.4e-148	58.6
WP_110344447.1\|2515306_2516734_+\|portal	phage portal protein	A0A0P0IQQ3	Lactobacillus_phage	4.7e-251	92.4
WP_110344448.1\|2516699_2517692_+\|capsid	minor capsid protein	A0A0P0ID43	Lactobacillus_phage	3.3e-171	91.2
WP_003658075.1\|2517816_2518455_+	DUF4355 domain-containing protein	A0A0P0ID10	Lactobacillus_phage	4.7e-86	96.2
WP_110344449.1\|2518467_2518782_+	hypothetical protein	A0A0P0IJQ8	Lactobacillus_phage	4.7e-47	93.3
WP_003658079.1\|2518795_2519815_+\|capsid	major capsid protein	A0A0P0IZJ7	Lactobacillus_phage	1.2e-189	99.1
WP_003658081.1\|2520042_2520417_+\|head,tail	phage head-tail connector protein	A0A0P0IZF6	Lactobacillus_phage	1.4e-58	91.9
WP_003658082.1\|2520421_2520724_+	hypothetical protein	A0A0P0HRN0	Lactobacillus_phage	2.0e-47	89.0
WP_003658084.1\|2520720_2521086_+\|head,tail	phage head-tail joining protein	A0A0P0IUZ3	Lactobacillus_phage	1.2e-57	96.7
WP_003658086.1\|2521086_2521491_+	DUF3168 domain-containing protein	A0A0P0I3C8	Lactobacillus_phage	7.8e-71	99.3
WP_003658088.1\|2521502_2522102_+\|tail	phage tail protein	A0A0P0ID88	Lactobacillus_phage	3.4e-102	93.9
WP_003658090.1\|2522188_2522524_+\|tail	tail assembly chaperone	A0A0P0IJV9	Lactobacillus_phage	1.6e-53	99.1
WP_003658091.1\|2522622_2522976_+	hypothetical protein	A0A0P0ID51	Lactobacillus_phage	9.0e-55	94.0
WP_003658092.1\|2522968_2526298_+\|tail	phage tail tape measure protein	A0A0P0IQK3	Lactobacillus_phage	3.6e-238	75.5
WP_110344450.1\|2526298_2528365_+\|tail	phage tail family protein	Q3L0S3	Lactobacillus_rhamnosus_Lc-Nu-like_prophage	1.7e-209	58.2
WP_110344451.1\|2528365_2530801_+\|tail	phage tail protein	Q6J1X1	Lactobacillus_phage	0.0e+00	73.2
WP_110344452.1\|2530802_2531087_+	hypothetical protein	Q3L0S1	Lactobacillus_rhamnosus_Lc-Nu-like_prophage	1.1e-21	53.2
WP_093997698.1\|2531083_2531215_+	XkdX family protein	A0A0P0HRS7	Lactobacillus_phage	8.5e-19	97.7
WP_016369921.1\|2531245_2531644_+	hypothetical protein	U5U712	Lactobacillus_phage	4.4e-66	99.2
WP_110344453.1\|2531815_2532262_+\|holin	phage holin	A8YQK6	Lactobacillus_phage	1.7e-66	95.9
WP_110344454.1\|2532272_2533448_+	LysM peptidoglycan-binding domain-containing protein	A0A0P0HRN9	Lactobacillus_phage	6.4e-89	50.5
WP_013245374.1\|2533630_2534875_+\|transposase	ISL3 family transposase	Q6V7R1	Burkholderia_virus	2.0e-11	22.4
WP_110344455.1\|2535079_2535574_-	DUF4411 family protein	NA	NA	NA	NA
WP_110344456.1\|2535570_2536680_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_003566290.1\|2537654_2537807_-	hypothetical protein	NA	NA	NA	NA
2537333:2537358	attR	NA	NA	NA	NA
WP_003566288.1\|2537952_2539368_+	group II intron reverse transcriptase domain-containing protein	NA	NA	NA	NA
WP_003566286.1\|2539805_2540030_-	hypothetical protein	NA	NA	NA	NA
WP_003566282.1\|2540491_2540968_-	hypothetical protein	NA	NA	NA	NA
WP_003566280.1\|2541267_2541480_+	hypothetical protein	NA	NA	NA	NA
WP_013245859.1\|2541848_2543342_+	protein kinase	M1HHG8	Acanthocystis_turfacea_Chlorella_virus	3.9e-14	30.0
WP_003566277.1\|2543667_2544312_-	DUF4767 domain-containing protein	NA	NA	NA	NA
WP_003566275.1\|2544688_2545018_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003566272.1\|2545718_2547314_-	hypothetical protein	NA	NA	NA	NA
WP_003566270.1\|2547622_2548390_+	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_110344458.1\|2548564_2549326_-\|protease	matrixin family metalloprotease	G9I094	Helicoverpa_zea_nudivirus	1.7e-05	53.1

DBSCAN-SWA_7

2846715 : 2936116

Lactobacillus_phage(70.91%)

protease,tRNA,head,portal,terminase,integrase,holin,tail,capsid

attL 2855662:2855681|attR 2896314:2896333

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003564762.1\|2846715_2847483_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_003564764.1\|2847619_2847967_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_003564766.1\|2848193_2848370_+	hypothetical protein	NA	NA	NA	NA
WP_003658561.1\|2848402_2848648_+	DUF896 domain-containing protein	NA	NA	NA	NA
WP_003564771.1\|2848708_2848930_+	YneF family protein	NA	NA	NA	NA
WP_110344474.1\|2849071_2850829_+	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	3.0e-50	27.5
WP_003564775.1\|2850818_2852612_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	6.4e-40	25.4
WP_003564777.1\|2852709_2853501_-	DUF1003 domain-containing protein	NA	NA	NA	NA
WP_003570435.1\|2853531_2854926_-	amino acid permease	NA	NA	NA	NA
WP_003564783.1\|2854982_2855633_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
2855662:2855681	attL	NA	NA	NA	NA
WP_191984563.1\|2855804_2856977_-\|integrase	tyrosine-type recombinase/integrase	B4XYR4	Lactobacillus_phage	7.8e-103	48.7
WP_003658553.1\|2857083_2857347_-	hypothetical protein	B4XYT0	Lactobacillus_phage	3.2e-09	40.2
WP_110344476.1\|2857462_2858188_-	hypothetical protein	U5U717	Lactobacillus_phage	1.0e-20	30.5
WP_110344477.1\|2858202_2858424_+	hypothetical protein	U5U783	Lactobacillus_phage	4.8e-22	70.4
WP_110344478.1\|2858683_2859361_-	transcriptional regulator	O64371	Lactobacillus_phage	4.8e-81	92.0
WP_110344479.1\|2859425_2859848_-	ImmA/IrrE family metallo-endopeptidase	A0A1B0Y2S4	Lactobacillus_phage	8.3e-23	39.6
WP_110344480.1\|2859840_2860182_-	helix-turn-helix transcriptional regulator	A0A1B0Y3N1	Lactobacillus_phage	5.5e-17	43.1
WP_110344481.1\|2860440_2860686_+	hypothetical protein	A0A0P0ID24	Lactobacillus_phage	1.2e-37	95.1
WP_110344482.1\|2860686_2861427_+	ORF6C domain-containing protein	A0A1B0YEA7	Lactobacillus_phage	5.7e-43	51.7
WP_110344483.1\|2861427_2861643_+	hypothetical protein	A0A182BQC3	Lactococcus_phage	1.4e-13	52.1
WP_110344484.1\|2861605_2862100_-	hypothetical protein	NA	NA	NA	NA
WP_003572199.1\|2862164_2862521_+	DUF771 domain-containing protein	U5U4L9	Lactobacillus_phage	2.0e-62	98.3
WP_110344485.1\|2862605_2862827_+	hypothetical protein	NA	NA	NA	NA
WP_003658526.1\|2862893_2863208_+	hypothetical protein	NA	NA	NA	NA
WP_110344486.1\|2863200_2863950_+	DnaD domain protein	A0A0N7IRA7	Lactobacillus_phage	2.3e-36	57.7
WP_019909842.1\|2863964_2864789_+	ATP-binding protein	A0A0P0I3L9	Lactobacillus_phage	3.0e-117	75.5
WP_110344487.1\|2864788_2865307_+	exonuclease domain-containing protein	NA	NA	NA	NA
WP_110344488.1\|2865353_2865776_+	replication terminator protein	NA	NA	NA	NA
WP_110344489.1\|2865777_2866515_+	hypothetical protein	A0A097BY87	Enterococcus_phage	7.7e-48	43.0
WP_110344490.1\|2866526_2866814_+	hypothetical protein	Q8LTA8	Lactobacillus_phage	1.6e-49	94.7
WP_110344491.1\|2866883_2867216_+	hypothetical protein	NA	NA	NA	NA
WP_162596393.1\|2867689_2868148_+	hypothetical protein	NA	NA	NA	NA
WP_162596383.1\|2869065_2869728_+	hypothetical protein	NA	NA	NA	NA
WP_110344494.1\|2869826_2870033_+	hypothetical protein	NA	NA	NA	NA
WP_110344495.1\|2870022_2870970_-	hypothetical protein	NA	NA	NA	NA
WP_110344496.1\|2871679_2872897_+	hypothetical protein	A8YQN3	Lactobacillus_phage	2.1e-236	97.3
WP_110344497.1\|2872883_2873213_+	ribonucleoside-diphosphate reductase	A0A0N7IRA2	Lactobacillus_phage	8.7e-52	92.4
WP_110344566.1\|2873476_2873800_+	hypothetical protein	U5U409	Lactobacillus_phage	5.0e-36	87.2
WP_191984564.1\|2873801_2873966_+	hypothetical protein	A8YQN6	Lactobacillus_phage	8.2e-11	77.8
WP_110344498.1\|2873971_2874766_+	HNH endonuclease	U5U440	Lactobacillus_phage	1.2e-147	97.7
WP_110344499.1\|2874966_2875422_+\|terminase	P27 family phage terminase small subunit	U5U3Z1	Lactobacillus_phage	1.0e-79	98.7
WP_110344500.1\|2875443_2877156_+\|terminase	terminase large subunit	Q8LTC3	Lactobacillus_phage	0.0e+00	98.9
WP_045137015.1\|2877167_2877362_+	hypothetical protein	U5U6Z9	Lactobacillus_phage	7.2e-22	79.7
WP_110344501.1\|2877367_2878621_+\|portal	phage portal protein	Q8LTC2	Lactobacillus_phage	4.8e-236	98.8
WP_110344502.1\|2878574_2879204_+\|head,protease	HK97 family phage prohead protease	U5U3W0	Lactobacillus_phage	3.0e-117	99.0
WP_110344503.1\|2879245_2880448_+\|capsid	phage major capsid protein	B4XYP6	Lactobacillus_phage	2.8e-209	96.0
WP_110344504.1\|2880465_2880705_+	Ig-like domain-containing protein	A0A2D1GPN4	Lactobacillus_phage	1.6e-31	96.2
WP_110344505.1\|2880715_2881075_+\|head,tail	phage gp6-like head-tail connector protein	U5U4K5	Lactobacillus_phage	1.4e-58	95.8
WP_110344506.1\|2881064_2881394_+\|head	phage head closure protein	A0A2D1GPN9	Lactobacillus_phage	8.9e-57	98.2
WP_110344507.1\|2881393_2881780_+	HK97 gp10 family phage protein	U5U769	Lactobacillus_phage	6.1e-65	95.3
WP_110344508.1\|2881779_2882166_+\|tail	phage tail protein	U5U3W4	Lactobacillus_phage	6.3e-70	97.7
WP_110344509.1\|2882199_2882808_+\|tail	phage tail protein	A0A2D1GPC8	Lactobacillus_phage	2.1e-107	96.0
WP_080661678.1\|2882834_2883050_+	Ig-like domain-containing protein	A0A2D1GPF6	Lactobacillus_phage	3.7e-19	91.5
WP_033571039.1\|2883120_2883534_+	hypothetical protein	U5U4K9	Lactobacillus_phage	2.4e-51	99.3
WP_110344510.1\|2883656_2888519_+\|tail	phage tail tape measure protein	A0A2D1GPD5	Lactobacillus_phage	0.0e+00	94.3
WP_110344511.1\|2888519_2890514_+\|tail	phage tail family protein	Q3L0S3	Lactobacillus_rhamnosus_Lc-Nu-like_prophage	6.1e-217	59.8
WP_110344512.1\|2890514_2892950_+\|tail	phage tail protein	Q6J1X1	Lactobacillus_phage	0.0e+00	72.3
WP_110344513.1\|2892951_2893242_+	hypothetical protein	Q3L0S1	Lactobacillus_rhamnosus_Lc-Nu-like_prophage	1.5e-23	55.2
WP_110344514.1\|2893234_2893366_+	XkdX family protein	A0A0P0HRS7	Lactobacillus_phage	5.5e-18	95.3
WP_110344515.1\|2893396_2893783_+	hypothetical protein	U5U712	Lactobacillus_phage	2.1e-65	98.4
WP_041168793.1\|2893763_2893973_+	hypothetical protein	A0A2D1GPJ3	Lactobacillus_phage	1.5e-12	100.0
WP_110344516.1\|2893965_2894412_+\|holin	phage holin	A8YQK6	Lactobacillus_phage	1.9e-65	97.3
WP_110344517.1\|2894422_2895721_+	LysM peptidoglycan-binding domain-containing protein	B4XYQ9	Lactobacillus_phage	2.8e-218	89.8
WP_020967532.1\|2896366_2897101_+\|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	NA	NA	NA	NA
2896314:2896333	attR	NA	NA	NA	NA
WP_003565812.1\|2897090_2897360_+	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_003565810.1\|2897755_2898544_+	30S ribosomal protein S2	NA	NA	NA	NA
WP_003565808.1\|2898628_2899510_+	elongation factor Ts	NA	NA	NA	NA
WP_003565806.1\|2899745_2900465_+	UMP kinase	NA	NA	NA	NA
WP_003565804.1\|2900464_2901022_+	ribosome recycling factor	NA	NA	NA	NA
WP_003570430.1\|2901551_2902304_+	isoprenyl transferase	R9W0U9	Flavobacterium_phage	2.1e-21	41.2
WP_003565800.1\|2902339_2903128_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_110344519.1\|2903144_2904386_+\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
WP_003565796.1\|2904410_2906138_+\|tRNA	proline--tRNA ligase	A0A2K9L3R9	Tupanvirus	1.8e-07	29.9
WP_110344520.1\|2906204_2910539_+	PolC-type DNA polymerase III	A0A0A7RWA3	Clostridium_phage	1.5e-18	36.0
WP_003565790.1\|2910793_2911273_+	ribosome maturation factor RimP	NA	NA	NA	NA
WP_003565788.1\|2911289_2912543_+	transcription termination/antitermination protein NusA	NA	NA	NA	NA
WP_003565786.1\|2912554_2912848_+	YlxR family protein	NA	NA	NA	NA
WP_003565784.1\|2912850_2913150_+	YlxQ-related RNA-binding protein	NA	NA	NA	NA
WP_003565782.1\|2913170_2916002_+	translation initiation factor IF-2	A0A2H4UTS4	Bodo_saltans_virus	5.8e-19	40.0
WP_003565780.1\|2916062_2916416_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA
WP_003565760.1\|2916722_2917514_+	DUF475 domain-containing protein	S5MAL1	Bacillus_phage	1.8e-34	44.7
WP_003565758.1\|2917525_2918431_+\|tRNA	tRNA pseudouridine(55) synthase TruB	NA	NA	NA	NA
WP_003565755.1\|2918437_2919385_+	riboflavin biosynthesis protein RibF	NA	NA	NA	NA
WP_003565753.1\|2919386_2920532_+	oxygen-independent coproporphyrinogen III oxidase	NA	NA	NA	NA
WP_003565751.1\|2920694_2921741_+	heat-inducible transcriptional repressor HrcA	NA	NA	NA	NA
WP_003565749.1\|2921917_2922508_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_003565747.1\|2922537_2924412_+	molecular chaperone DnaK	A0A0N9QXN8	Chrysochromulina_ericina_virus	2.6e-140	51.0
WP_003565745.1\|2924524_2925688_+	molecular chaperone DnaJ	A0A1V0SBY2	Catovirus	1.4e-24	27.2
WP_003565743.1\|2927790_2928699_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003565741.1\|2928855_2930694_+	elongation factor 4	E4ZFJ7	Streptococcus_phage	2.0e-20	25.9
WP_003565739.1\|2930785_2931019_-	hypothetical protein	NA	NA	NA	NA
WP_003565737.1\|2931024_2931501_-	ASCH domain-containing protein	NA	NA	NA	NA
WP_003565736.1\|2931824_2932196_-	hypothetical protein	NA	NA	NA	NA
WP_003565734.1\|2932470_2934765_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	5.1e-74	31.6
WP_003565731.1\|2934761_2935289_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	6.5e-25	41.4
WP_003565730.1\|2935612_2936116_+\|tRNA	Cys-tRNA(Pro) deacylase	NA	NA	NA	NA

DBSCAN-SWA_8

2948712 : 3001332

Lactobacillus_rhamnosus_Lc-Nu-like_prophage(37.93%)

transposase,tRNA,head,portal,terminase,holin,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003565699.1\|2948712_2949159_+\|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	NA	NA	NA	NA
WP_003658142.1\|2949158_2949785_+	HAD family hydrolase	NA	NA	NA	NA
WP_003565695.1\|2949857_2951180_-	N-acetylmuramoyl-L-alanine amidase	A0A0N6W8I1	Bacillus_phage	8.4e-13	32.2
WP_110344522.1\|2951318_2951759_-	hypothetical protein	NA	NA	NA	NA
WP_003565691.1\|2952004_2952880_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.0e-22	32.5
WP_003565689.1\|2952876_2954382_+	hypothetical protein	NA	NA	NA	NA
WP_003565687.1\|2954510_2954837_-	inorganic diphosphatase	NA	NA	NA	NA
WP_003565685.1\|2955357_2956641_+\|tRNA	histidine--tRNA ligase	NA	NA	NA	NA
WP_003565683.1\|2956642_2958448_+\|tRNA	aspartate--tRNA ligase	A0A2K9KZX5	Tupanvirus	8.0e-06	34.4
WP_003565681.1\|2958535_2958988_+	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA
WP_003565679.1\|2959079_2960000_+	YitT family protein	NA	NA	NA	NA
WP_003565677.1\|2960135_2961023_+	deoxyribonuclease IV	A0A2H4UU70	Bodo_saltans_virus	2.1e-23	28.5
WP_003565675.1\|2961019_2961850_-	kinase/pyrophosphorylase	NA	NA	NA	NA
WP_003565673.1\|2962153_2962330_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_003565671.1\|2962358_2962793_+	GatB/YqeY domain-containing protein	NA	NA	NA	NA
WP_003565669.1\|2963241_2964228_+	PhoH family protein	H6X2N1	Pseudomonas_phage	1.9e-49	46.5
WP_003565667.1\|2964231_2964690_+	rRNA maturation RNase YbeY	NA	NA	NA	NA
WP_110344523.1\|2964673_2965072_+	diacylglycerol kinase family protein	NA	NA	NA	NA
WP_003570376.1\|2965073_2965463_+	cytidine deaminase	NA	NA	NA	NA
WP_003565663.1\|2965459_2966362_+	GTPase Era	NA	NA	NA	NA
WP_003658157.1\|2966361_2967141_+	DNA repair protein RecO	NA	NA	NA	NA
WP_003565659.1\|2967391_2967703_+	hypothetical protein	NA	NA	NA	NA
WP_003565657.1\|2967847_2968156_+	hypothetical protein	NA	NA	NA	NA
WP_110344525.1\|2968990_2969857_+	hypothetical protein	NA	NA	NA	NA
WP_110344567.1\|2970088_2970856_+	hypothetical protein	NA	NA	NA	NA
WP_110344526.1\|2972248_2973484_+	hypothetical protein	NA	NA	NA	NA
WP_110344527.1\|2973487_2974096_+	HNH endonuclease	A0A0A7DMX6	Lactobacillus_phage	8.3e-16	32.2
WP_110344528.1\|2974149_2974377_+	hypothetical protein	NA	NA	NA	NA
WP_110344529.1\|2974369_2975227_+	hypothetical protein	NA	NA	NA	NA
WP_110344530.1\|2975183_2975597_+	single-stranded DNA-binding protein	M4W9P8	Bacillus_phage	6.3e-07	33.6
WP_191984569.1\|2975590_2976133_+	HNH endonuclease	B8R694	Lactobacillus_phage	3.1e-30	45.7
WP_110344532.1\|2976125_2976404_+	hypothetical protein	NA	NA	NA	NA
WP_110344533.1\|2976413_2976929_+	hypothetical protein	NA	NA	NA	NA
WP_079322958.1\|2977209_2977506_+\|transposase	transposase	NA	NA	NA	NA
WP_096836596.1\|2977502_2978366_+\|transposase	IS3 family transposase	Q6J1X2	Lactobacillus_phage	3.1e-24	30.5
WP_191984565.1\|2978577_2979318_+	SAM-dependent DNA methyltransferase	L0P368	Streptococcus_phage	8.3e-26	47.7
WP_110344534.1\|2979776_2980244_+\|terminase	phage terminase small subunit P27 family	B8R648	Lactobacillus_phage	1.0e-21	38.5
WP_110344535.1\|2980237_2982130_+\|terminase	terminase large subunit	A0A0M7RDK9	Lactobacillus_phage	9.8e-156	44.7
WP_079322958.1\|2982290_2982587_+\|transposase	transposase	NA	NA	NA	NA
WP_096836596.1\|2982583_2983447_+\|transposase	IS3 family transposase	Q6J1X2	Lactobacillus_phage	3.1e-24	30.5
WP_110344568.1\|2983603_2984608_+\|portal	phage portal protein	Q9AZM4	Lactococcus_phage	1.7e-69	42.1
WP_079322958.1\|2986208_2986505_+\|transposase	transposase	NA	NA	NA	NA
WP_096836596.1\|2986501_2987365_+\|transposase	IS3 family transposase	Q6J1X2	Lactobacillus_phage	3.1e-24	30.5
WP_110344536.1\|2988001_2988289_+	hypothetical protein	NA	NA	NA	NA
WP_110344537.1\|2988278_2988623_+\|head	phage head closure protein	Q6J1Y0	Lactobacillus_phage	2.8e-45	79.8
WP_110344538.1\|2988625_2989045_+	HK97 gp10 family phage protein	Q3L0S9	Lactobacillus_rhamnosus_Lc-Nu-like_prophage	1.9e-67	92.8
WP_110344539.1\|2989041_2989422_+	DUF806 family protein	Q3L0S8	Lactobacillus_rhamnosus_Lc-Nu-like_prophage	9.7e-63	94.4
WP_110344540.1\|2989422_2990034_+\|tail	phage tail protein	Q3L0S7	Lactobacillus_rhamnosus_Lc-Nu-like_prophage	6.7e-98	90.1
WP_110344541.1\|2990196_2990547_+\|tail	phage tail protein	Q3L0S6	Lactobacillus_rhamnosus_Lc-Nu-like_prophage	7.8e-43	79.3
WP_003658477.1\|2990509_2990755_+	hypothetical protein	Q3L0S5	Lactobacillus_rhamnosus_Lc-Nu-like_prophage	5.0e-36	94.7
WP_110344569.1\|2990784_2994678_+	tape measure protein	Q6J1X5	Lactobacillus_phage	2.5e-254	69.4
WP_020967537.1\|2994678_2996691_+\|tail	phage tail family protein	Q3L0S3	Lactobacillus_rhamnosus_Lc-Nu-like_prophage	1.6e-297	76.5
WP_110344542.1\|2996691_2999145_+\|tail	phage tail protein	Q3L0S2	Lactobacillus_rhamnosus_Lc-Nu-like_prophage	0.0e+00	68.6
WP_110344543.1\|2999154_2999445_+	hypothetical protein	Q3L0S1	Lactobacillus_rhamnosus_Lc-Nu-like_prophage	7.4e-39	82.3
WP_110344544.1\|2999437_2999569_+	XkdX family protein	Q3L0S0	Lactobacillus_rhamnosus_Lc-Nu-like_prophage	1.4e-16	86.0
WP_110344545.1\|2999593_2999827_+	DNA primase	Q3L0R9	Lactobacillus_rhamnosus_Lc-Nu-like_prophage	5.8e-34	96.1
WP_110344546.1\|2999839_3000172_+\|holin	phage holin	Q3L0R7	Lactobacillus_rhamnosus_Lc-Nu-like_prophage	2.2e-31	97.6
WP_110344547.1\|3000174_3001332_+	LysM peptidoglycan-binding domain-containing protein	Q6J1W8	Lactobacillus_phage	1.2e-143	64.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP029686

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection