CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Prophage number
NZ_CP029650	Staphylococcus aureus strain AR_0471 plasmid unnamed1, complete sequence	0 crisprs	csa3	0	1
NZ_CP029651	Staphylococcus aureus strain AR_0471 plasmid unnamed2, complete sequence	0 crisprs	NA	0	0
NZ_CP029652	Staphylococcus aureus strain AR_0471 chromosome, complete genome	4 crisprs	DinG,DEDDh,cas3,WYL,csa3	1	10

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

23950 : 32124

Staphylococcus_phage(42.86%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000690638.1\|23950_24544_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	1.5e-41	51.1
WP_001284653.1\|24807_25188_-	penicillinase repressor BlaI	NA	NA	NA	NA
WP_001096385.1\|25177_26935_-	beta-lactam sensor/signal transducer BlaR1	NA	NA	NA	NA
WP_000733289.1\|27041_27887_+	penicillin-hydrolyzing class A beta-lactamase BlaZ	A0A1B0VBP7	Salmonella_phage	1.2e-31	34.4
WP_001566953.1\|28255_28864_+	recombinase family protein	E5FFF9	Burkholderia_phage	6.2e-11	28.5
WP_110183607.1\|29285_29603_-	hypothetical protein	A0A075M4C7	Staphylococcus_phage	2.1e-10	36.1
WP_098686295.1\|29623_30753_-\|transposase	IS3 family transposase	A0A2I7SC85	Paenibacillus_phage	5.2e-80	54.3
WP_103151956.1\|30764_31283_-	hypothetical protein	A0A075M4C7	Staphylococcus_phage	2.1e-15	36.1
WP_001146199.1\|31392_32124_-	exotoxin	A0EX09	Staphylococcus_phage	6.9e-25	35.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP029652

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP029652_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029652_1

1923001-1923134

Orphan

Consensus_repeat	Method
TATTGAAGAAGATACAA	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP029652_1

>merge|NZ_CP029652|1|1923001-1923134|PILER-CR
TATTGAAGAAGATACAAATAAAGATAAACCTAATTATCAATTCGGTGGACACAACAGTGTTGATTTTGAAGAAGATACACTTCCAAAAGTAAGCGGTCAAAATGAAGGTCAACAAACGATTGAAGAAGATACAA

>NZ_CP029652|1|1|1923001-1923134|PILER-CR
TATTGAAGAAGATACAA	ATAAAGATAAACCTAATTATCAATTCGGTGGACACAACAGTGTTGA
TTTTGAAGAAGATACAC	TTCCAAAAGTAAGCGGTCAAAATGAAGGTCAACAAAC
GATTGAAGAAGATACAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029652.1\|WP_000481431.1\|1918687_1920046_+\|gluconate-permease	unknown	unknown	gnl\|CDD\|129873
NZ_CP029652.1\|WP_000755944.1\|1927705_1928098_+\|(deoxy)nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|239517
NZ_CP029652.1\|WP_072468810.1\|1925765_1927574_-\|phospho-sugar-mutase	unknown	unknown	gnl\|CDD\|100092
NZ_CP029652.1\|WP_000088708.1\|1928099_1930961_+\|DUF3427-domain-containing-protein	unknown	unknown	gnl\|CDD\|223989
NZ_CP029652.1\|WP_000581922.1\|1931266_1932025_+\|tandem-type-lipoprotein	unknown	unknown	gnl\|CDD\|367972
NZ_CP029652.1\|WP_000876660.1\|1917017_1918571_+\|gluconokinase	unknown	unknown	gnl\|CDD\|130381
NZ_CP029652.1\|WP_000217713.1\|1924767_1925076_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029652.1\|WP_000074010.1\|1915395_1916160_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133381
NZ_CP029652.1\|WP_000382895.1\|1907369_1908065_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213235
NZ_CP029652.1\|WP_000289134.1\|1914538_1915231_+\|GTP-pyrophosphokinase-family-protein	unknown	unknown	gnl\|CDD\|225232
NZ_CP029652.1\|WP_000435044.1\|1908582_1909194_-\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP029652.1\|WP_000586377.1\|1911929_1913753_+\|FUSC-family-protein	unknown	unknown	gnl\|CDD\|224208
NZ_CP029652.1\|WP_000495500.1\|1935262_1935589_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029652.1\|WP_000721337.1\|1923774_1924641_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	unknown	unknown	gnl\|CDD\|224131
NZ_CP029652.1\|WP_000678763.1\|1925215_1925482_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029652.1\|WP_031785529.1\|1916313_1916994_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_CP029652.1\|WP_000660709.1\|1909740_1911018_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340877
NZ_CP029652.1\|WP_000521958.1\|1935591_1935879_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029652.1\|WP_001117051.1\|1913891_1914308_+\|DUF2188-domain-containing-protein	unknown	unknown	gnl\|CDD\|227213
NZ_CP029652.1\|WP_001656994.1\|1932136_1932910_+\|tandem-type-lipoprotein	unknown	unknown	gnl\|CDD\|367972

Protein	Function_ID	Function_description	E-value
NZ_CP029652.1\|WP_000481431.1\|1918687_1920046_+\|gluconate-permease	gnl\|CDD\|129873	TIGR00791, Gluconate_permease, gluconate transporter. This family includes known gluconate transporters of E. coli and Bacillus species as well as an idonate transporter from E. coli. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	5.20973e-168
NZ_CP029652.1\|WP_000755944.1\|1927705_1928098_+\|(deoxy)nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|239517	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.	2.96691e-56
NZ_CP029652.1\|WP_072468810.1\|1925765_1927574_-\|phospho-sugar-mutase	gnl\|CDD\|100092	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NZ_CP029652.1\|WP_000088708.1\|1928099_1930961_+\|DUF3427-domain-containing-protein	gnl\|CDD\|223989	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].	1.44505e-90
NZ_CP029652.1\|WP_000581922.1\|1931266_1932025_+\|tandem-type-lipoprotein	gnl\|CDD\|367972	pfam04507, DUF576, Csa1 family. This family contains several uncharacterized staphylococcal proteins. These proteins have been called conserved staphylococcal antigens (Csa).	1.75633e-127
NZ_CP029652.1\|WP_000876660.1\|1917017_1918571_+\|gluconokinase	gnl\|CDD\|130381	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway. [Energy metabolism, Sugars].	0
NZ_CP029652.1\|WP_001656994.1\|1932136_1932910_+\|tandem-type-lipoprotein	gnl\|CDD\|367972	pfam04507, DUF576, Csa1 family. This family contains several uncharacterized staphylococcal proteins. These proteins have been called conserved staphylococcal antigens (Csa).	1.42545e-128
NZ_CP029652.1\|WP_000074010.1\|1915395_1916160_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133381	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Unique to this family, is a TipAL-like, lineage specific Bacilli subgroup, which has five conserved cysteines in the C-terminus of the protein.	1.00541e-33
NZ_CP029652.1\|WP_000382895.1\|1907369_1908065_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213235	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter. The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.	6.45372e-77
NZ_CP029652.1\|WP_000289134.1\|1914538_1915231_+\|GTP-pyrophosphokinase-family-protein	gnl\|CDD\|225232	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only].	5.59791e-85
NZ_CP029652.1\|WP_000435044.1\|1908582_1909194_-\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	7.26208e-43
NZ_CP029652.1\|WP_000586377.1\|1911929_1913753_+\|FUSC-family-protein	gnl\|CDD\|224208	COG1289, COG1289, Predicted membrane protein [Function unknown].	6.22112e-86
NZ_CP029652.1\|WP_000721337.1\|1923774_1924641_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	gnl\|CDD\|224131	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane].	5.5142e-177
NZ_CP029652.1\|WP_031785529.1\|1916313_1916994_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	1.84464e-42
NZ_CP029652.1\|WP_000660709.1\|1909740_1911018_+\|MFS-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.24287e-91
NZ_CP029652.1\|WP_001117051.1\|1913891_1914308_+\|DUF2188-domain-containing-protein	gnl\|CDD\|227213	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown].	1.37211e-62

>NZ_CP029652.1|WP_000481431.1|1918687_1920046_+|gluconate-permease
MFNEIWPLISVVLGIVILLVLIIGFKLNTFISLIITSMITALMLGIPLTKIMETIEKGMGSTLGHIALIFGLGAILGKLLADGGGATRIADTLNQKFGQKHVQWAMLVAAFIVGIALFFEVGLVLLIPLVFTVAKRANVSVLKLGLPMVTALSVTHGFLPPHPGPVVIAKELKANVGDVLLYGMIIAIPVTLIAGPIFNKIAQKMIPSAYTREGDISALGAQKEFTDQEMPGFGMSLLTATLPVILMLVSTITQLVTGHDKPTNLFESIIYMIGTAGTAMLIAVLFAIVTMGLMRKRKMNHIMESVTNAIYPIGMMLLIIGGGGTFKQVLIDGGVGNTIAKMFEGTEMSPILLAWIVAAVLRIALGSATVAAISTTGIVLPLLQSSDVNVALVVLAIGAGSVILSHVNDAGFWMFKEYFGLTVKETFLTWSLLETIISVSGIIFILFISLFV
>NZ_CP029652.1|WP_000876660.1|1917017_1918571_+|gluconokinase
MKYMIGVDIGTTSTKSVLYDENGTFIMKHQIGYDLHTPNVDVSEENPDELFDAVLMTIKYIMRESKVNQDNIKFVSFSAQMHSLIAMDQQHQRLTNNITWADNRAAKYATVINEVHDGNAIYQRTGTPIHPMSPLAKIFWMKHEWQDVFQRTAKFADIKTYIFYHLFDRYIIDYSMASATGMFNLETLDWDVGALELLGISEEMLPELVPTTYVMKGMKERYATLMGLNEDTPFVIGASDGVLSNLGVNSVGKGEVAVTIGTSGAIRTVIDKPRTDYKGRIFCYVLTEDHYVIGGPVNNGGVVLRWLRDELLASEVETAKRLGVDPYDVLTQIAKRVKPGADGLIFHPYLAGERAPLWNANARGSFFGLTLSHKKEHMIRAALEGVLYNLYTVYLALIEVMNETPKMIKATGGFAKSEVWRQMMSDIFDTELVVPESYESSCLGACVLGLKAVDDIEDFSIISSMVGATNNHTPIKENVAVYQELVSIFINLSRSLTENYEQIADFQRQHMAENKTQ
>NZ_CP029652.1|WP_031785529.1|1916313_1916994_+|GntR-family-transcriptional-regulator
MMYGYPEKWLEGMTTGEGIAAELRLGIVNGHIAEGTLLTENQMAKQFNVSRSPIRDAFKLLQQNQLIQLERMGAHVLLFGEQEKKEMYDLRLMLESFAFSRVKNQERLPIVKEMKKQLEMMKVAVKFEDAESFTKHDFEFHETLIKASNHQYLNSFWSHLKPVMMALVLTSMRQRMQQNPQDFERIHHNHQVFIDAVEQYDSQILKEAFHLNFDDVGKDIEGFWLN
>NZ_CP029652.1|WP_000074010.1|1915395_1916160_+|MerR-family-transcriptional-regulator
MSNYSTGELAKLCNVTTRTIQYYDRKGILKPQGFTEGKRRVYTEQQRQTLELILLLKDLGCALSDIDMLLKGEGTLKTLNTLLTMKQQEINQQVKQQQAVLNKIKNVQYYVNEASTSPITHLKDIEHVMSKSAEMKSIRRNIWISAGIIGIIQYSSIMSSILMKNKWPFLIALPFMIGYGIGVTFYYQQKVAYLCPNCQHIFSPSLWAVIKAKHTATTRRFECPNCHETHYCIEVPKAHMSTEQLEVPRTKNNN
>NZ_CP029652.1|WP_000289134.1|1914538_1915231_+|GTP-pyrophosphokinase-family-protein
MYVDRKPSLYLEDLRHDFKNSLSKFENGDEAFDTLLGFVELDHIYSSALKEISTKLSILDDNFNHIYKHNPIHHMERRVKEMRSLIEKLNRKGLQISAETAKEHILDIAGIRVVCNYLDDIYLIEEMLLKQEDVQLIKRKDYIQHPKENGYRSLHIVVSIPVFLAERVEVLPVEIQIRTIGMDMWASLEHKIRYKNKAETEKYRDLLKECATEITEVENKLQQIHSEITE
>NZ_CP029652.1|WP_001117051.1|1913891_1914308_+|DUF2188-domain-containing-protein
MPFTMKGYPEKWKEFEVIKRQKAIEIANAMLKEGYLEKDVVPIAAKKAKDWYRALSKEEIKALEEENFVQFHTATMEKPEVDSEYATTDNEEHIQEQSNQDKSYFDSESIGNQSGGIRQREPLMDGPHPKVVESFKDV
>NZ_CP029652.1|WP_000586377.1|1911929_1913753_+|FUSC-family-protein
MIIPAIIGYLCGNFQFGLLVATGTLAHIYVFKGPSRSKLRTVIICNLAFAICMILGTLTATTPLVFGMTLLIVTVIPFYIFTALKIAGPSSTFFIVTFSLPINLPIAPEEALYRGFAILVGGVLATMMVLITILLSKNKAEEQAIQNDFKLISKLLHAYNDKSAFSQVAKTAVDSFKASDKLLITSTSSNDKLSRRFQKLLLLHTSAQGIYSELLELNAKQIRPLPDELIEMMDHIIAQLDNSDENVRYWRKEVTVSEEFQNLFNHILKIDEMVHANEARIAYEADMRKPLYSKRIYQNLTLDSIVFRNTLRYAAIMMIAIFIALMFDFEKAYWIPLSAHTVLLGTSTIHAIERGMARGLGTILGVLVLSVILLFSIPTPVAVILMGIAALFTEALVGANYTIAVVFITIQVILMNGLASQNLTINIAFPRVIDVAMGIVIAIIGLFVLGQRTASALLPYVMAEVVRKEATLFHYLFSENQYKDDVYQKNTAMNLSVKLNNMTQVYNAANGELFSDKTLIQNYYPSLFALEEISFMLNRAMANEDRLTINEQLMGEYLATFENIAKHLELNTELEIKILPDLPQYNYIQSAMMNIQHNGFRERDKNV
>NZ_CP029652.1|WP_000660709.1|1909740_1911018_+|MFS-transporter
MKEKRTNVRWMFALAFFFIGVIAYMDRANISYIAKQMMDDLGMTKPQFGLLASFFSLGYALMQVPSGMLAEKFGPRKMITIALVWWSAFTILTGMIKNHGLIYLVRFLFGVGEAPMYPSNAVFNSFWFSKNEKGRASSALLAGSYFGPVLAPIVTIAIVNAFNWQAVFYIFGAVGILMAVLWAIIAKDLPEQHRMVNEAEKRFIMENRDIVATEKSSPPWNDFFKRFSFYAIAIQYFVVQFIITLFLIWLPTYLTEVFHVNFKEMSISSLPWLLMFFLILSAGAISDRVLGLGRSKFVARGVIAIAGFIVFAVSIIFAVRTGNLYVSIFWLSLGLGGIGISMGMSWAAATDLGRNFSGTVSGWMNLWGNIGALISPLLAGLFVEHLGWTMTFQLLIVPAVIAVIMWFYVKPDQPLIVSDDKAIEK
>NZ_CP029652.1|WP_000435044.1|1908582_1909194_-|DedA-family-protein
MEQIITEFISRFGYAAIFILILLENVLPIVPSEIILTFAGLMSVKSHLSILTLFIIATIASFIGLLILYYICRLISEERLYRFIDRHGKWIKLKSKDLKRANDWFKKYGVWAVFICRFIPVLRVLITIPAGVNRMNVVTFTVISLIGTTIWNFGLILLGRTLSDSFGMLMTGLHTYSRIMYVVIIIAVIYFAIRYIGKRKRVK
>NZ_CP029652.1|WP_000382895.1|1907369_1908065_-|ATP-binding-cassette-domain-containing-protein
MDVLTIEHLTKKIGNKTILEDVSFKLKRGQIVGLVGANGAGKTTLMKVILGYSSFQSGNFNVINSKDSKNNIGALIENPGIYPFMSGYENLKLLNESKNTQDIDKIVSQLHMDEYIHKKAKTYSLGMKQKLGIAIAFLNDPQFIILDEPMNGLDPKAVRDVRELIVQKAQEGVTFLISSHILSELVKITNSILIINKGKIVTETSEEELKQFKDNDLENVLLDIIEKEDQA
>NZ_CP029652.1|WP_000721337.1|1923774_1924641_+|UTP--glucose-1-phosphate-uridylyltransferase-GalU
MKKIKKAIIPAAGLGTRFLPATKAMPKEMLPILDKPTIQYIVEEAARAGIEDIIIVTGRHKRAIEDHFDSQKELEMVLKEKGKSELLEKVQYSTELANIFYVRQKEQKGLGHAISSARQFIGNEPFAVLLGDDIVESEVPAVKQLIDVYEETGHSVIGVQEVPEADTHRYGIIDPLTKNGRQYEVKKFVEKPAQGTAPSNLAIMGRYVLTPEIFDYLKTQKEGAGNEIQLTDAIERMNNDNQVYAYDFEGERYDVGEKLGFVKTTIEYALKDDSMREELTRFIKELGL
>NZ_CP029652.1|WP_000217713.1|1924767_1925076_-|hypothetical-protein
MTVNIVFSIVFCISMVILGIYVAITKDFTLISYINQTTIADKHKNQIAYIFALCISLSAVFLMSAILCFEYDFIALSFLFLTIALLLIALFYVCFYKITKYP
>NZ_CP029652.1|WP_000678763.1|1925215_1925482_-|hypothetical-protein
MKGSKQILLIMGIISLIVLFIFTLFIMAQYAKHYEQKSDSSNAHTLNSSSAIIEQHTMSNIASLDLYAPVRNITSSRDIHPIYFMTKD
>NZ_CP029652.1|WP_072468810.1|1925765_1927574_-|phospho-sugar-mutase
MHFHTHLLYNTCEKYCLGAVFFYFWGVFLYNSLHKCKGFSFHVLLSLTEILKGCLATMNKELWIERANDSLVKHFYEQQSDIEQREGFESKLTFGTAGIRGKFGLGEGRLNKFTIEKLALGLARYLNAQTNNPTIVIHYDIRHLSAEFAQIIANVLANHQITVYLPDTYKTTPELSFAVRNLNTTSGIMITASHNPKDYNGIKVYGSDGAQLSTDASELVSRYIEDVGDPLQIDIPISKQNTSYIKPFPKSVTDDYMKHIQNMIGYIPKSDLQVVFTSLHGTSVPIVPKLLKSLNFNQFNLVEAQCKPDPNFSSVQSANPEDHRAFDQAVELAHKNDADLLICTDPDADRLGIAVRDVHGQITYFNGNQIGALLLNYRIQQTSQLRHRLMIQSIVSSDLTKSLARYNNVEYKEVLTGFKFIAQEIRQLDDYQNMIFAFEESYGFLSDPFVRDKDAVQIVPLIIKYASELKLYGKTLKDELEQIYQTVGRHEDTLFSHTLEGLEGKKKINAIMTKFRSNPPQEIQGLKVKAIEDYLTSEVYQLDKDTTSQINSPKSNVIRVLFDEGFIALRPSGTEPKIKLYVSLKCPNFDDVAQKINAMIFS
>NZ_CP029652.1|WP_000755944.1|1927705_1928098_+|(deoxy)nucleoside-triphosphate-pyrophosphohydrolase
MKKVINVVGAIIFSDNKILCAQRSEEMSLPLMWEFPGGKIEKNETEKDALIREIREEMKCDLIVGDKVITTEHEYDFGIVRLTTYKCTLNKELPTLTEHKSIEWLSINELDKLNWAPADIPAVNKIMTEG
>NZ_CP029652.1|WP_000088708.1|1928099_1930961_+|DUF3427-domain-containing-protein
MSRLLNDFNQSLHKGFIDKDISHKGNYTPKLLVNNKNEKVLSTIIDELQKCETFYFSVAFITESGLASLKAQLLDLSNKGVKGKILTSNYLGFNSPKMYGELLKLKNVEVRLTDIAGFHAKGYIFEHKDYSSMVIGSSNLTSNALKVNYEHNVLLSTMKNGDLVDSVKNEFDLLWQNSTPLTQQWINSYKESFEYRSLEKLAEVEQTQMLIADKVKKSVEIVPNLMQAEALRSLKAIRDKAKDKALIISATGTGKTILCALDVREVNPNKFLFIVHNEGILNRAKEEFKKVLPIKNDSDFGLLTGKHRDVDAKYLFATIQTLSRDDNFKQFDEKEFDYIVFDEAHRSAASTYQRVFNYFKPKFMLGMTATPERSDELSIFELFDYNIAYEIRLQAALESDILCPFHYFGVTDYVHQGIKEDDVTKLRYLTSDERVNYIIQKTDYYGYSGEILQGLIFVSSKKEAYDLADKLSSKGIKSVALTGDDSVNYRQIVIEKLKEGKINYIITVDLFNEGIDIPEVNQVVMLRPTESSIIFIQQLGRGLRKSSNKEYVTVIDFIGNYKTNYLIPIALSGDQSQNKDNYKKFLTNNDSINGVSTINFEEIAKKQIYNSLDAVSLNQNKLILKAYEEVENRLGHMPLLMDFIQQHSIDPSVIFSKFSNYYEFLVRYKKIDALLTENESKNLVFFSRQIAPGLKRIDSLVLEELLKNELTYDELKNKMLNEVKDITENDIDTSLRILDFSFYNAGIEKIYGSPIIERNERMIRLSDAFTNALSNQTFKIFLEDLIELSKYNNEKYQKGKNGLILYNKYSREDFSKIFNWNKNGSSVIMGYMIRSQEMPIFITYDKHEDISDSTKYEDEFLSQDELKWFTKSNRTLKTKEVQKILSHRAKGIKMYIFVQKKDDDGIYFYYLGTAGYIEGSEKQDKMLNGSNVVTMDLALDKAVRDDIYRYLTN
>NZ_CP029652.1|WP_000581922.1|1931266_1932025_+|tandem-type-lipoprotein
MIHSRKLRIWLYLVLLAVFISACNVKEDKQIKENFNKTLSLYPTKNLEDFYDKEGFRDQEFDKRDKGTWIINSGMNIQLKGGALKSRAMVLYINRNTRTAKGYFLISEITEDKKGYVHNKEKKYPVKMEHNRIIPTKPITDDKLKKEIENFKFFVQYGNFKDFKDYKDGDISYNPNVPSYSANYQLNNDDYNVQQLRKRYDISTKRAPELKLRGSGDLKGSSVGSKELEFNFIRNKEENVYFSDSINFKPTE
>NZ_CP029652.1|WP_001656994.1|1932136_1932910_+|tandem-type-lipoprotein
MIHSKRVKLCLCLIILSVFIGACGMKKEESSKDKQIKENFNKTLSLYPTKNLEDFYDKEGFRDQEFDKRDKGTWIINSGMNIQLKEGALKSREMILYINRNTRTTKGYFIVGEITKDKKGYVHDKDKKYPVKMEHNQIIPTKPIKDEKLKKEIENFKFFVQYGNFKDFKDYKNGNISYNPNVPSYSAKYQLSNDDYNVRQLRRRYDIPTKQAPELLLKGDGDLKGSSVGSKELEFNFIRNKEENVYFTDSINFKPTE
>NZ_CP029652.1|WP_000495500.1|1935262_1935589_+|hypothetical-protein
MFTTYKNINELENAYDEERKQLNDAFNQLDELRHQTRRKCEQMYDHFLYLKHKMNYSEDAMIRMTRIIESFDRETNQRIRHHEMKLEDYKDDLRREYLKQSDRIEGDE
>NZ_CP029652.1|WP_000521958.1|1935591_1935879_+|hypothetical-protein
MGLDFSGLPDLAVLEQMKEKEQISEVIAPEHVRMHHDHQNKLKSDEKILLDQMVSHFKKFEDDFKNAAQGAWVKNATDELKDISNDLEKIQDIKV

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Crispr_ID: NZ_CP029652_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029652_2

2159191-2159275

Orphan

Consensus_repeat	Method
CAAGTTGGGGAACGGGGCCCCAACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029652_2

>merge|NZ_CP029652|2|2159191-2159275|CRISPRCasFinder
CAAGTTGGGGAACGGGGCCCCAACACAGAAGGTGACGAAAAGTCAGCTTACAATAATGTGCAAGTTGGGGAACGGGGCCCCAACA

>NZ_CP029652|2|1|2159191-2159275|CRISPRCasFinder
CAAGTTGGGGAACGGGGCCCCAACA	CAGAAGGTGACGAAAAGTCAGCTTACAATAATGTG
CAAGTTGGGGAACGGGGCCCCAACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029652.1\|WP_000076912.1\|2152803_2153808_+\|molybdopterin-biosynthesis-protein-MoeB	unknown	unknown	gnl\|CDD\|181084
NZ_CP029652.1\|WP_000951057.1\|2161287_2161728_-\|winged-helix-DNA-binding-protein	unknown	unknown	gnl\|CDD\|197670
NZ_CP029652.1\|WP_000134532.1\|2154345_2154840_-\|cyclic-pyranopterin-monophosphate-synthase-MoaC	unknown	unknown	gnl\|CDD\|236483
NZ_CP029652.1\|WP_000066900.1\|2159631_2159982_+\|HTH-type-transcriptional-regulator-SarV	unknown	unknown	gnl\|CDD\|130944
NZ_CP029652.1\|WP_031785427.1\|2159335_2159506_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029652.1\|WP_000503826.1\|2153837_2154344_+\|molybdenum-cofactor-biosynthesis-protein-MoaB	unknown	unknown	gnl\|CDD\|223595
NZ_CP029652.1\|WP_001161089.1\|2168019_2168337_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029652.1\|WP_000184408.1\|2160083_2161295_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341042
NZ_CP029652.1\|WP_000259727.1\|2154902_2156162_+\|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl\|CDD\|238452
NZ_CP029652.1\|WP_000913006.1\|2152030_2152636_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|226628
NZ_CP029652.1\|WP_000643987.1\|2157349_2157949_+\|molybdenum-cofactor-guanylyltransferase-MobA	unknown	unknown	gnl\|CDD\|234725
NZ_CP029652.1\|WP_000866968.1\|2157109_2157343_+\|molybdopterin-converting-factor-subunit-1	unknown	unknown	gnl\|CDD\|340452
NZ_CP029652.1\|WP_001621998.1\|2162646_2162898_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029652.1\|WP_000413869.1\|2163286_2164552_+\|lipid-II:glycine-glycyltransferase-FemX	unknown	unknown	gnl\|CDD\|225224
NZ_CP029652.1\|WP_000600978.1\|2161890_2162655_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|379203
NZ_CP029652.1\|WP_001621996.1\|2157968_2158991_+\|GTP-3',8-cyclase-MoaA	unknown	unknown	gnl\|CDD\|274250
NZ_CP029652.1\|WP_000051210.1\|2168581_2168746_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029652.1\|WP_000602943.1\|2156158_2156644_+\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|224677
NZ_CP029652.1\|WP_000592293.1\|2164668_2167836_+\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NZ_CP029652.1\|WP_000808500.1\|2156657_2157104_+\|molybdenum-cofactor-biosynthesis-protein-MoaE	unknown	unknown	gnl\|CDD\|223391

Protein	Function_ID	Function_description	E-value
NZ_CP029652.1\|WP_000076912.1\|2152803_2153808_+\|molybdopterin-biosynthesis-protein-MoeB	gnl\|CDD\|181084	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated.	2.31627e-131
NZ_CP029652.1\|WP_000951057.1\|2161287_2161728_-\|winged-helix-DNA-binding-protein	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	3.07765e-15
NZ_CP029652.1\|WP_000134532.1\|2154345_2154840_-\|cyclic-pyranopterin-monophosphate-synthase-MoaC	gnl\|CDD\|236483	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC.	4.41307e-97
NZ_CP029652.1\|WP_000602943.1\|2156158_2156644_+\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	gnl\|CDD\|224677	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism].	1.12631e-49
NZ_CP029652.1\|WP_000066900.1\|2159631_2159982_+\|HTH-type-transcriptional-regulator-SarV	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	2.64009e-20
NZ_CP029652.1\|WP_000184408.1\|2160083_2161295_-\|MFS-transporter	gnl\|CDD\|341042	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli membrane proteins, YfcJ and YhhS, Bacillus subtilis uncharacterized MFS-type transporter YwoG, and similar proteins. YfcJ and YhhS are putative arabinose efflux transporters. YhhS has been implicated glyphosate resistance. YfcJ-like arabinose efflux transporters belong to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.02108e-73
NZ_CP029652.1\|WP_000259727.1\|2154902_2156162_+\|molybdopterin-molybdotransferase-MoeA	gnl\|CDD\|238452	cd00887, MoeA, MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.	5.57792e-158
NZ_CP029652.1\|WP_000503826.1\|2153837_2154344_+\|molybdenum-cofactor-biosynthesis-protein-MoaB	gnl\|CDD\|223595	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism].	7.75988e-66
NZ_CP029652.1\|WP_000643987.1\|2157349_2157949_+\|molybdenum-cofactor-guanylyltransferase-MobA	gnl\|CDD\|234725	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed.	2.35833e-67
NZ_CP029652.1\|WP_000866968.1\|2157109_2157343_+\|molybdopterin-converting-factor-subunit-1	gnl\|CDD\|340452	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins. MoaD, also termed molybdopterin synthase sulfur carrier subunit, or MPT synthase subunit 1, or MPT synthase small subunit, or molybdopterin-converting factor small subunit, or molybdopterin-converting factor subunit 1, is a conserved small sulfur carrier protein that has beta-grasp ubiquitin-like (Ubl) fold involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. MoaD is activated in an ATP-dependent manner by sulfurtransferases similar to the activation mechanism of ubiquitin-activating enzyme E1.	5.94445e-24
NZ_CP029652.1\|WP_000413869.1\|2163286_2164552_+\|lipid-II:glycine-glycyltransferase-FemX	gnl\|CDD\|225224	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis].	3.74651e-143
NZ_CP029652.1\|WP_000600978.1\|2161890_2162655_+\|VOC-family-protein	gnl\|CDD\|379203	pfam13468, Glyoxalase_3, Glyoxalase-like domain. This domain is related to the Glyoxalase domain pfam00903.	5.4045e-38
NZ_CP029652.1\|WP_001621996.1\|2157968_2158991_+\|GTP-3',8-cyclase-MoaA	gnl\|CDD\|274250	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine. [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin].	5.09588e-165
NZ_CP029652.1\|WP_000913006.1\|2152030_2152636_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|226628	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism].	1.03488e-114
NZ_CP029652.1\|WP_000592293.1\|2164668_2167836_+\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NZ_CP029652.1\|WP_000808500.1\|2156657_2157104_+\|molybdenum-cofactor-biosynthesis-protein-MoaE	gnl\|CDD\|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	5.56799e-58

>NZ_CP029652.1|WP_001621996.1|2157968_2158991_+|GTP-3',8-cyclase-MoaA
MVEQIKDKLGRPIRDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMRRDLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLNVKVNVVIQKGINDDQIIPMLEYFKDKHIEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQHFEINPVEPKYFGEVAKYYRHKDNGVQFGLITSVSQSFCSTCTRARLSSDGKFYGCLFATVDGFNVKTFIRSGVTDEELKEQFKALWQIRDDRYSDERTAQTVANRQRKKINMNYIGG
>NZ_CP029652.1|WP_000643987.1|2157349_2157949_+|molybdenum-cofactor-guanylyltransferase-MobA
MKAIILAGGHSVRFGKPKAFAEVNGETFYSRVIKTLESTNMFNEIIISTNAQLATQFKYPNVVIDDENHNDKGPLAGIYTIMKQHPEEELFFVVSVDTPMITGKAVSTLYQFLVSHLIENHLDVAAFKEDGRFIPTIAFYSPNALGAITKALHSDNYSFKNVYHELSTDYLDVRDVDAPPYWYKNINYQHDLDTLIQNL
>NZ_CP029652.1|WP_000866968.1|2157109_2157343_+|molybdopterin-converting-factor-subunit-1
MKVLYFAEIKDILQKAQEDIVLEQALSVQQFEDLLFERYPQINNKKFQVAVNEEFVQKSDFIQPNDTVALIPPVSGG
>NZ_CP029652.1|WP_000808500.1|2156657_2157104_+|molybdenum-cofactor-biosynthesis-protein-MoaE
MKQFEIVTEPIQTEQYREFTINEYQGAVVVFTGHVREWTKGVKTEYLEYEAYIPMAEKKLAQIGDEINEKWPGTITSIVHRIGPLQISDIAVLIAVSSPHRKDAYRANEYAIERIKEIVPIWKKEIWEDGSKWQGHQKGNYEEAKREE
>NZ_CP029652.1|WP_000602943.1|2156158_2156644_+|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B
MILQIVGYKKSGKTTLMRHIVSFLKSHGYTVATIKHHGHGKEDLQLQDSDVDHMKHFEAGADQSIVQGFQYQQTVTRVENQNLTQIIEKSVTIDTNIVLVEGFKNADFEKVVVYRDEEELQVLQQLLNVCYSINVREHEDFTAFEQWLLNKIKNDCDTQLI
>NZ_CP029652.1|WP_000259727.1|2154902_2156162_+|molybdopterin-molybdotransferase-MoeA
MVVEKRNPIPVKEAIQRIVNQQSSMPAITVALEKSLNHILAEDIVATYDIPRFDKSPYDGFAIRSVDSQGASGQNRIEFKVIDHIGAGSVSDKLVGDHEAVRIMTGAQIPNGADAVVMFEQTIELEDTFTIRKPFSKNENISLKGEETTTGDVVLKKGQVINPGAIAVLATYGYAEVKVIKQPSVAVIATGSELLDVNDVLEDGKIRNSNGPMIRALAEKLGLEVGIYKTQQDDLDSGIQVVKEAMEKHDIVITTGGVSVGDFDYLPEIYKSVKAEVLFNKVAMRPGSVTTVAFADGKYLFGLSGNPSACFTGFELFVKPAVKHMCGALEVFPQIIKATLMEDFTKANPFTRFIRAKATLTSAGATVVPSGFNKSGAVVAIAHANCMVMLPGGSRGFKAGHTVDIILTESDAAEEELLL
>NZ_CP029652.1|WP_000134532.1|2154345_2154840_-|cyclic-pyranopterin-monophosphate-synthase-MoaC
MTEFTHINQQGHAKMVDVSDKQITKRTAVAHSSITVNETIYKQISNNTNTKGNVLNTAQIAGIMAAKNTSTIIPMCHPLPLTGIDVHFSWDETNAPLYTLNIQTTVSTTGKTGVEMEALTAASATALTIYDMTKAVDKGMIIGETYLESKSGGKSGDFQRQLDQ
>NZ_CP029652.1|WP_000503826.1|2153837_2154344_+|molybdenum-cofactor-biosynthesis-protein-MoaB
MGEHQNVKLNRTVKAAVLTVSDTRNFDTDKGGQCVRQLLQADNVEVSDAHYTIVKDEKVAITTQVKKWLEEDIDVIITTGGTGIAKRDVTIEAVKPLLTKEIEGFGELFRYLSYVEDVGTRALLSRAVAGTVNNKLIFSIPGSTGAVKLALEKLIKPELNHLIHELTK
>NZ_CP029652.1|WP_000076912.1|2152803_2153808_+|molybdopterin-biosynthesis-protein-MoeB
MSQERYSRQILFKQIGEIGQNKINQKCALIIGMGALGTHVAEGLVRAGIAKLIIVDRDYIEFSNLQRQTLFTEEDALKMMPKVVAAKKHLLALRSDVDIDDYIAHVDYYFLETHGQDVDVIIDATDNFETRQLINDFAYKHRIPWIYGGVVQSTYTEAAFIPGKTPCFNCLVPQLPALNLTCDTVGVIQPAVTMATSLQLRDAMKVLTDQPIDTKITYGDIWEGSHYSFGFSKMQRSACTTCGDVPSYPYLNKNEQRYATLCGRDTVQYENASITHDILVQFLKQHQLNYRSNSYMVMFEFKGHRIVAFKGGRFLIHGMTRTSDATHLMNLLFG
>NZ_CP029652.1|WP_000913006.1|2152030_2152636_+|ATP-binding-cassette-domain-containing-protein
MLKINLKYQLKNTLIRINIDDTEPKIYAVRGPSGIGKTTVLNMIAGLRKADEAIIEVNGQLLTDTAKNVNVKIQQRRIGYLFQDYQLFPNMTVYKNITFMAEPSEHIDQLIQTLNIDHLMKQYPMTLSGGEAQRVALARALSTKPDLILLDEPFSSLDDTTKDESITLVKRIFNEWQIPIIFVTHSNYEAEQMAHEIITIG
>NZ_CP029652.1|WP_031785427.1|2159335_2159506_-|hypothetical-protein
MFRFISFGQLVVYSTTFIPKKDILQLNDMECDTNVKKPLKIYYVVILKSGIEMIFS
>NZ_CP029652.1|WP_000066900.1|2159631_2159982_+|HTH-type-transcriptional-regulator-SarV
MSNKVQRFIEAERELSQLKHWLKTTHKISIEEFVVLFKVYEAEKISGKELRDTLHFEMLWDTSKIDVIIRKIYKKELISKLRSETDERQVFYFYSTSQKKLLDKITKEIEVLSVTN
>NZ_CP029652.1|WP_000184408.1|2160083_2161295_-|MFS-transporter
MTNQGSLNKSPIFTKSFTINFFVNFIVYLCMYLLLVVIAGYSKQAFDASDSLAGLVVGLFIVGSLIGRFATGKFVNQIGPKRLLFIGLIALIITQLLYFIDGSLAFLIFVRLINGIATAVVTTATGTIAAYVTPVNRKSEGISLFSLSLVLGTAIGPFLGMLLITKYAIDLLFIICVILGILGLIISLFIKVDFEVTNSKTETNVIDKPRFSIHQFIAKEAIPVAVIMLLIGVTYASILTYLQAFALERHLVTAASYFFICYAIASLITRPIAGRLMDDKNENIIVYPAFIMLLLSFVCLISSYQSWLILLAGACLGLGYGNLSSAMQSIAIKVSPPIKYGIATSTFYVGLDAGIGFGPSFLGLFTHMFSYSEIFGFMAALAIITMLVYFLIHGRHVTRNAMN
>NZ_CP029652.1|WP_000951057.1|2161287_2161728_-|winged-helix-DNA-binding-protein
MLSQEFFNSFITIYRPYLKLAEPILEKHNIYYGQWLILRDIAKHQPTTLIEISHRRAIEKPTARKTLKALIENDLITVENSLEDKRQKFLTLTPKGHALYEIVCLDVQKLQQAVVAKTNISQDQMQETINVMNQIHEILLKEAHND
>NZ_CP029652.1|WP_000600978.1|2161890_2162655_+|VOC-family-protein
MILKFDHIIHYIDRLDRFSFPGDVIKLHSGGYHHKYGTFNKLGYINENYIELLDVENNEKLKKMAKTIEGGVAFATQIVQEKYEQGFKNICLRTNDIEAVKNKLQSEQVEVVGPIQMERDTHKDGKVKWQLLYIMNQDDDEIKPPFFIQWEESDSMRTKKLQKYFQKQFSIETVIVKSKNRSQTVSNWLKWFDMDIVEENDHYTDLILKNDDIYFRIEDGKVSKYHSVIIKDAQATSPYSIFIRGAIYRFEPLV
>NZ_CP029652.1|WP_001621998.1|2162646_2162898_-|hypothetical-protein
MRTIILSLFIIMNIVAIVMTLSQPLTVNYFSLRVILIFFTFILSIFFILIKSSRLNNILTILSIALAVIHMGILAHSTYVYLY
>NZ_CP029652.1|WP_000413869.1|2163286_2164552_+|lipid-II:glycine-glycyltransferase-FemX
MEKMHITNQEHDAFVKSHPNGDLLQLTKWAETKKLTGWYARRIAVGRDGEVQGVAQLLFKKVPKLPYTLCYISRGFVVDYSNKEALNALLDSTKEIAKAEKAYAIKIDPDVEVDKGTDALQNLKALGFKHKGFKEGLSKDYIQPRMTMITPIDKTDDELLNSFERRNRSKVRLALKRGTTVERSDREGLKTFAELMKITGERDGFLTRDISYFENIYDALHEDGDAELFLVKLDPKENIAKVNQELNELHAEIAKWQQKMETSEKQAKKAQNMINDAQNKIAKNEDLKRDLEALEKEHPEGIYLSGALLMFAGSKSYYLYGASSNEFRDFLPNHHMQYTMMKYAREHGATTYDFGGTDNDPDKDSEHYGLWAFKKVWGTYLSEKIGEFDYVLNQPLYQLIEQVKPRLTKAKIKISRKLKRK
>NZ_CP029652.1|WP_000592293.1|2164668_2167836_+|efflux-RND-transporter-permease-subunit
MIKKLLQFSLGNKFAIFLMVVLVVLGGVYASAKLKLELLPNVQNPVISVTTTMPGATPQSTQDEISSKIDNQVRSLAYVKNVKTQSIQNASIVTVEYENNTDMDKAEEQLKKEIDKIKFKDEVGQPELRRNSMDAFPILAYSFSNKENDLKKVTKVLNEQLIPKLQTVDGVQNAQLNGQTNREITLKFKQNELEKYGLTADDVENYLKTATRTTPLGLFQFGDKDKSIVVDGQYQSVDAFKNINIPLTLAGGQGQSQSQSDNKQNSAMSDVNQASPQQNSKASASNNISGMPTAKLGDLADITVGDVRTSISKTNGKDAVNLQITKAQDANTVQVAKDVQRKIDTFVDENKDFNVTKTMDTAKPVEKSLYTMVEKASLGTIVAIIVILLFLRNIRTTAISIISIPLSLLMALIALKLSDVSLNILTLGALTVAIGRVIDDSIVVVENIYRRLTDSEEQLKGENLIISATTEVFKPIMSSTLVTIIVFLPLVFVSGSVGEMFRPFALAIAFSLLASLLVSITLVPALAATLFKKGVKRRNKQHQEGLGVVSTTYKKVLHWSLNHKWIVIILSTLILVATIVFGGPRLGTSFISAGDDKFLAITYTPKPGETEQAVLNHAKDVEKYLKQKKHVKTIQYSVGGSSPVDPTGSTNSMAIMVEYDNDTPNFDVEADKVIKHADGFKHPGEWKNQDLGTGAGNKSVEVTVKGPSMDAIKSTVKDIEQKMKQVKGLANVKSDLSQTYDQYEIKVDQNKAAENGISASQLAMHLNENLPEKTVTTVKENGKTVDVKVKQNKQTDWSEDKLNNITLKKPTGGTIKLGDIATLVKTTTPSKLTQEQGDYATTVSAKVTNKDVGGTTRQVMSKINNLDKPNNVKVNIGGASDDINNAMTQLAFAMLAAIIIVYLILVITFKGGLAPFTILFSLPFTVIGVIIALLITGETISVPSLIGMLMLIGIVVTNAIVLIDRVINNEQQGMEMKEALIEAGGTRIRPILMTAIATIGALVPLLFGQDSSILISKGLAATVIGGLISSTLLTLVVVPVIYEILFTLKKRFTKR
>NZ_CP029652.1|WP_001161089.1|2168019_2168337_-|hypothetical-protein
MQFYLILLALLYLVVSFISIFKMEVIFTRILRIIMGVLLLFVVALTTMSFPKENWWVFIVLLLLVGNVEVTGFKMLKKDLKGVNILNLMSLFIFVIYFILTIALF
>NZ_CP029652.1|WP_000051210.1|2168581_2168746_-|hypothetical-protein
MSLENQLAELKYDYVRLQGDLEKRESLNLDTSALVRQLKDIENEIRNVRAQMQD

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP029652_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029652_3

2197728-2197860

Orphan

Consensus_repeat	Method
GAAACCAATGATATCAAGGGTTTTGTGAGCTTTCGAGTAAAGAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029652_3

>merge|NZ_CP029652|3|2197728-2197860|CRISPRCasFinder
GAAACCAATGATATCAAGGGTTTTGTGAGCTTTCGAGTAAAGAGAAAAATTTTCGAGTAACTCAAAAGAAAAATATTAAAAAATCATGAGAAACCAGTGATATCAAGGGTTTTGTGAGCTTTCGAGTAAAGAG

>NZ_CP029652|3|2|2197728-2197860|CRISPRCasFinder
GAAACCAATGATATCAAGGGTTTTGTGAGCTTTCGAGTAAAGAG	AAAAATTTTCGAGTAACTCAAAAGAAAAATATTAAAAAATCATGA
GAAACCAGTGATATCAAGGGTTTTGTGAGCTTTCGAGTAAAGAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029652.1\|WP_000170975.1\|2195495_2195894_+\|30S-ribosomal-protein-S9	unknown	unknown	gnl\|CDD\|178888
NZ_CP029652.1\|WP_001622005.1\|2198934_2199135_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029652.1\|WP_000389669.1\|2191534_2192344_+\|energy-coupling-factor-transporter-ATPase	unknown	unknown	gnl\|CDD\|184207
NZ_CP029652.1\|WP_000569649.1\|2189667_2190612_+\|DNA-directed-RNA-polymerase-subunit-alpha	unknown	unknown	gnl\|CDD\|235359
NZ_CP029652.1\|WP_000655242.1\|2198770_2198953_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029652.1\|WP_054194503.1\|2202203_2202629_-\|MAP-domain-containing-protein	unknown	unknown	gnl\|CDD\|367591
NZ_CP029652.1\|WP_001255379.1\|2205177_2205534_-\|cystatin-like-fold-lipoprotein	unknown	unknown	gnl\|CDD\|338858
NZ_CP029652.1\|WP_000746375.1\|2204565_2205069_-\|transposase	unknown	unknown	gnl\|CDD\|225382
NZ_CP029652.1\|WP_000542274.1\|2190628_2190997_+\|50S-ribosomal-protein-L17	unknown	unknown	gnl\|CDD\|235522
NZ_CP029652.1\|WP_001250038.1\|2195044_2195482_+\|50S-ribosomal-protein-L13	unknown	unknown	gnl\|CDD\|181703
NZ_CP029652.1\|WP_000130128.1\|2199423_2201088_+\|acetolactate-synthase-AlsS	unknown	unknown	gnl\|CDD\|236312
NZ_CP029652.1\|WP_078056058.1\|2204048_2204585_-\|IS30-family-transposase	unknown	unknown	gnl\|CDD\|225382
NZ_CP029652.1\|WP_000204279.1\|2196242_2197679_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225420
NZ_CP029652.1\|WP_000027572.1\|2192340_2193201_+\|energy-coupling-factor-transporter-ATPase	unknown	unknown	gnl\|CDD\|184205
NZ_CP029652.1\|WP_000810444.1\|2205589_2206180_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029652.1\|WP_000791632.1\|2193190_2193997_+\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	unknown	unknown	gnl\|CDD\|223692
NZ_CP029652.1\|WP_001221849.1\|2194001_2194805_+\|tRNA-pseudouridine(38-40)-synthase-TruA	unknown	unknown	gnl\|CDD\|234577
NZ_CP029652.1\|WP_000101625.1\|2189203_2189593_+\|30S-ribosomal-protein-S11	unknown	unknown	gnl\|CDD\|180007
NZ_CP029652.1\|WP_000186132.1\|2201124_2201829_+\|acetolactate-decarboxylase	unknown	unknown	gnl\|CDD\|226058
NZ_CP029652.1\|WP_000044372.1\|2202923_2203739_+\|HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|319792

Protein	Function_ID	Function_description	E-value
NZ_CP029652.1\|WP_000170975.1\|2195495_2195894_+\|30S-ribosomal-protein-S9	gnl\|CDD\|178888	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.	2.2295e-82
NZ_CP029652.1\|WP_000101625.1\|2189203_2189593_+\|30S-ribosomal-protein-S11	gnl\|CDD\|180007	PRK05309, PRK05309, 30S ribosomal protein S11; Validated.	2.01588e-89
NZ_CP029652.1\|WP_000569649.1\|2189667_2190612_+\|DNA-directed-RNA-polymerase-subunit-alpha	gnl\|CDD\|235359	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional.	1.89947e-175
NZ_CP029652.1\|WP_000791632.1\|2193190_2193997_+\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	gnl\|CDD\|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	5.04502e-49
NZ_CP029652.1\|WP_054194503.1\|2202203_2202629_-\|MAP-domain-containing-protein	gnl\|CDD\|367591	pfam03642, MAP, MAP domain. This presumed 110 amino acid residue domain is found in multiple copies in MAP (MHC class II analogue protein). The protein has been found in a wide range of extracellular matrix proteins.	2.23368e-34
NZ_CP029652.1\|WP_000389669.1\|2191534_2192344_+\|energy-coupling-factor-transporter-ATPase	gnl\|CDD\|184207	PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional.	0
NZ_CP029652.1\|WP_000746375.1\|2204565_2205069_-\|transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	2.373e-09
NZ_CP029652.1\|WP_000542274.1\|2190628_2190997_+\|50S-ribosomal-protein-L17	gnl\|CDD\|235522	PRK05591, rplQ, 50S ribosomal protein L17; Validated.	2.70058e-62
NZ_CP029652.1\|WP_001250038.1\|2195044_2195482_+\|50S-ribosomal-protein-L13	gnl\|CDD\|181703	PRK09216, rplM, 50S ribosomal protein L13; Reviewed.	4.91074e-100
NZ_CP029652.1\|WP_078056058.1\|2204048_2204585_-\|IS30-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	1.93586e-52
NZ_CP029652.1\|WP_000204279.1\|2196242_2197679_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|225420	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription].	4.72936e-64
NZ_CP029652.1\|WP_000027572.1\|2192340_2193201_+\|energy-coupling-factor-transporter-ATPase	gnl\|CDD\|184205	PRK13646, cbiO, energy-coupling factor transporter ATPase.	0
NZ_CP029652.1\|WP_001255379.1\|2205177_2205534_-\|cystatin-like-fold-lipoprotein	gnl\|CDD\|338858	pfam13627, LPAM_2, Prokaryotic lipoprotein-attachment site. In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognizes a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached.	7.17536e-05
NZ_CP029652.1\|WP_001221849.1\|2194001_2194805_+\|tRNA-pseudouridine(38-40)-synthase-TruA	gnl\|CDD\|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	3.32017e-120
NZ_CP029652.1\|WP_000130128.1\|2199423_2201088_+\|acetolactate-synthase-AlsS	gnl\|CDD\|236312	PRK08617, PRK08617, acetolactate synthase AlsS.	0
NZ_CP029652.1\|WP_000186132.1\|2201124_2201829_+\|acetolactate-decarboxylase	gnl\|CDD\|226058	COG3527, AlsD, Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism].	1.05414e-118
NZ_CP029652.1\|WP_000044372.1\|2202923_2203739_+\|HAD-IIB-family-hydrolase	gnl\|CDD\|319792	cd02605, HAD_SPP, sucrose-phosphatase, similar to Synechocystis sp PCC 6803 SPP. Sucrose-phosphatase (SPP; EC 3.1.3.24) catalyzes the dephosphorylation of sucrose-6(F)-phosphate (Suc6P)-the final step in the pathway of sucrose biosynthesis in plants and cyanobacteria. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.68683e-98

>NZ_CP029652.1|WP_000204279.1|2196242_2197679_+|MarR-family-transcriptional-regulator
MTSSKYIEYLQTEVEGQLLDRKRASINPKDVAQHISAFANAEGGKLVIGIEDNGEISGFNHSKAKKKEVYIEAPFEHLYRIPKYTYEIIEVKKRDGTMDEILVFDIEPSYDAIITLKDDSVYLRINDKSRKLTHNQITNLEYDRGSRRFEEELVEYSSIEDVNEELVDEFKQLLNTNVDNEKLLKARGFMREGKLTVAGLLLFSNNINVYLPGARIRFMRYEGTKEESGTRLNIVKDITFDKALPVAIREARAFINTQLREYTFLGKEGRFVTLPEYPEFAWFEGMINSIVHRRYDNQGDHIRIKMFDDRLEISSPGALPASVTLENIKEERYSRNPKLAAALTQYKWVRESNEGVGRIFDEMKEYFLDDPVYSEPNNSSVQLALKNNIIARKKRETGRVSNIITPELFESLNEQQELIVRHLYNQGELTASKIANIIQRSVPTARKRLKELEEMNIISTHGSSKNDPKRTYYLLGFE
>NZ_CP029652.1|WP_000170975.1|2195495_2195894_+|30S-ribosomal-protein-S9
MTLAQVEYRGTGRRKNSVARVRLVPGEGNITVNNRDVREYLPFESLILDLNQPFDVTETKGNYDVLVNVHGGGFTGQAQAIRHGIARALLEADPEYRGSLKRAGLLTRDPRMKERKKPGLKAARRSPQFSKR
>NZ_CP029652.1|WP_001250038.1|2195044_2195482_+|50S-ribosomal-protein-L13
MRQTFMANESNIERKWYVIDAEGQTLGRLSSEVASILRGKNKVTYTPHVDTGDYVIVINASKIEFTGNKETDKVYYRHSNHPGGIKSITAGELRRTNPERLIENSIKGMLPSTRLGEKQGKKLFVYGGAEHPHAAQQPENYELRG
>NZ_CP029652.1|WP_001221849.1|2194001_2194805_+|tRNA-pseudouridine(38-40)-synthase-TruA
MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRMHKRHVRIHPSSRTDRGVHAIQQYFHFDTELNIPMSQWQYAMNRTLPDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQHRDPFQSGLKTFIPETLDLDKMNKAAQQFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTDDGFDYIVTGSGFLYNMVRVLVAFLIEVGKGRHEISDVPKLLESKNRKNVPFTAPAEGLYLEKIYLDENELLKDFGNDIKIHRKKSLQND
>NZ_CP029652.1|WP_000791632.1|2193190_2193997_+|energy-coupling-factor-transporter-transmembrane-protein-EcfT
MKNKLIIGRYLPNDSYVHHLDPRAKLMFVFLFIILIFVCHSPLTYLWVFALILFFMRLAKIQLWFLIKGLTPIFFFLIFTLMMHIFLTKGGYVLVEWHGITIETNGILEGLYISLRLIGIVMIATIMTLSTSPIDLTDAFERLLAPLKMFKLPVHQLSMIMSIALRFIPTLMDELDKIILAQKSRGSEISSGNIATRIKSFIPLLVPLFISAFQRAEELAVAMEVRGYDANVQRTSYRQLKWQLRDTLSLIMIIPIAIILFVLKYSGV
>NZ_CP029652.1|WP_000027572.1|2192340_2193201_+|energy-coupling-factor-transporter-ATPase
MSIRFNDVSYTYQQGTPYEHQAIHDINTEFEQGKYYAIVGQTGSGKSTLIQNINALIKPTSGTVTIDDVTVTHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREMIFGPKNFKMDLDEAKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSVLAMNPDIIVVDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILISHDMNEVARYADEVIVMKEGSIVSQTSPKELFKEKEKLAGWHIGLPDIVQLQYDFEQKHQTKLKDIALTEEAFVSLYKEWQHEK
>NZ_CP029652.1|WP_000389669.1|2191534_2192344_+|energy-coupling-factor-transporter-ATPase
MEDKNSVIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIENVKSGEIFYNNQTITDDNFEKLRKDIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPHDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIASVLALNPSVIILDEATSMLDPDARQNLLDLVRIVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTAIEIFDHAEELTTIGLDLPFPIKINQMLGHQTSFLTYEGLVNQL
>NZ_CP029652.1|WP_000542274.1|2190628_2190997_+|50S-ribosomal-protein-L17
MGYRKLGRTSDQRKAMLRDLATSLIISERIETTEARAKEVRSVVEKLITLGKKGDLASRRNAAKTLRNVEILNEDETTQTALQKLFGEIAERYTERQGGYTRILKQGPRRGDGAESVIIELV
>NZ_CP029652.1|WP_000569649.1|2189667_2190612_+|DNA-directed-RNA-polymerase-subunit-alpha
MIEIEKPRIETIEISEDAKFGKFVVEPLERGYGTTLGNSLRRILLSSLPGAAVKYIEIEGVLHEFSAVDNVVEDVSTIIMNIKQLALKIYSEEDKTLEIDVRDEGEVTASDITHDSDVEILNPELKIATVSKGGHLKIRLVANKGRGYALAEQNNTSDLPIGVIPVDSLYSPVERVNYTVENTRVGQSSDFDKLTLDVWTNGSITPQESVSLAAKIMTEHLNIFVGLTDEAQNAEIMIEKEEDQKEKVLEMSIEELDLSVRSYNCLKRAGINSVQELADKSEADMMKVRNLGRKSLEEVKYKLEDLGLGLRKED
>NZ_CP029652.1|WP_000101625.1|2189203_2189593_+|30S-ribosomal-protein-S11
MARKQVSRKRRVKKNIENGVAHIRSTFNNTIVTITDEFGNALSWSSAGALGFKGSKKSTPFAAQMASETASKSAMEHGLKTVEVTVKGPGPGRESAIRALQSAGLEVTAIRDVTPVPHNGCRPPKRRRV
>NZ_CP029652.1|WP_000655242.1|2198770_2198953_+|hypothetical-protein
MKDSIFWKKAFIPVYFIVAMLVFLLFRFYIKTDNFSIYLMIIFLICLGTASIIYNYKTNR
>NZ_CP029652.1|WP_001622005.1|2198934_2199135_-|hypothetical-protein
MSLSLVFSRWRFEIVVLWWNEFVVLWRYKNAVLWQFQNGVSIKKSQQDLELTVTYTFHTYIYRLVL
>NZ_CP029652.1|WP_000130128.1|2199423_2201088_+|acetolactate-synthase-AlsS
MTDKKYTAADIVIDTLKNNGVEYVFGIPGAKIDYLFNALIDDGPELIVTRHEQNAAMMAQGIGRLTGKPGIVLVTSGPGVSNLTTGLLTATSEGDPVLALGGQVKRNDLLRLTHQSIDNAALLKYSSKYSEEVQDPESLSEVMTNAIRIATSGKNGASFISIPQDVISSPVESKAISLCQKPNLGVPSEQDINDVIEAIKNASFPVLLAGMRSSSADETNAIRKLVERTNLPVVETFQGAGVISRELENHFFGRVGLFRNQVGDELLRKSDLVVTIGYDPIEYEASNWNKELETQIINIDEVQAEITNYMQPKKELIGNIAKTIEMISEKVDEPFINQQHLDELEQLRTHIDEETGIKATHEEGILHPVEIIESMQKVLTDDTTVTVDVGSHYIWMARNFRSYNPRHLLFSNGMQTLGVALPWAISAALVRPNTQVVSVAGDGGFLFSSQDLETAVRKNLNIIQLIWNDGKYNMVEFQEEMKYKRSSGVDFGPVDFVKYAESFGAKGLRVTNQEELEAAIKEGYETDGPVLIDIPVNYKDNIKLSTNMLPDVFN
>NZ_CP029652.1|WP_000186132.1|2201124_2201829_+|acetolactate-decarboxylase
MTNVLYQHGTLGTLMAGLLKGTASINELLQHGDLGIATLTGSNGEVIFLDGKAYHANEHKEFVELKGDELTPYATVTKFVADTSYETKDKSSEAVFAEIKEKMLSENLFSAVKISGLFKKMHIRMMPAQEPPYTRLIDSARRQPEQTETYVKGSVVGFFTPELFHGIGSAGFHVHFANDDRNFGGHVLDFEVEDVKVEIQNIETFEQHFPIHDEDFTNANIDYKDISDEIREAE
>NZ_CP029652.1|WP_054194503.1|2202203_2202629_-|MAP-domain-containing-protein
MKLKSFVTATLALGLLSTVGAALPSHEASADSNNGYKEMTMDGYHTVPYTISVDGITALHRTYFVFPENKKVLYQEIDSKVKNELASQRGVTTEKINNAQTATYTLTLNDGNKKVVNIKKNDDAKNLIDPSTIKQIQIVVK
>NZ_CP029652.1|WP_000044372.1|2202923_2203739_+|HAD-IIB-family-hydrolase
MSKRLLLFDFDETYFKHNTNEEDLSHLREMEKLLEKLTNNNEVMTAVLTGSTFQSVMDKMDQVNMTFKPLHIFSDLSSKMFTWNNGEYVESETYKKKVLSEPFLFEDIEDILRHISAQYNVEFIPQRAFEGNETHYNFYFHSIGNHNKDRRILESLVRYANDQNYTARFSRSNPLAGDPENAYDIDFTPSNAGKLYATQFLMKKYNIPVKSILGFGDSGNDEAYLSYLEHAYLMSNSRDEALKQKFRLTKYPYYQGITLHVKEFVEGKYDY
>NZ_CP029652.1|WP_078056058.1|2204048_2204585_-|IS30-family-transposase
MGSKSINNREEFGHYEIDTVWSVRPSTYCLLTIIERKTRYLYASRLNTRKSNVVCNEIINIMKPLLPKSITMDRGKEFALFEQIEDELNCSIYFSDLGCPYQRGSIENANGLLRQYYPKGTDFANITQKSLDEAVKQINARPRMIFDYKSSEEMLKYHVSTQNCEPILNDCVRHEPVN
>NZ_CP029652.1|WP_000746375.1|2204565_2205069_-|transposase
MKKRKKRKELDYKTRLAIAKYLNDGLNIIQISKILGRDDAVLYREVNKRSVDGVYNPLLAEEDAIKSRSISDEQVAKRRRLNDETKAYIEEKLSLKWSPRQIASQIEKDTGYYISYPTIYRYIRNGLVKVDVKRDMRQAGKKYNKSSEKRGKLDVGSRVIKYRLKKY
>NZ_CP029652.1|WP_001255379.1|2205177_2205534_-|cystatin-like-fold-lipoprotein
MRRWFVLILGLVILLSACGQKYDKEIDEVTKLEKESIQDVKNTKKYKNVERSKSYYKIYNDGEVIIMTYMPFKDSNTKVSRVYKINQTSDKYEEDSNIDAEKFEKDNKPVYEENNMKK
>NZ_CP029652.1|WP_000810444.1|2205589_2206180_-|hypothetical-protein
MKQKIIMFTLVTVILFCAVLIGYQIPKQQVKMKQNQIEDLQEEQRILRDKNGELNKLVKRQSKTVISDEEKQIREVSSNFVKQMFEMKKDSSFKSKAPQIKPLVTKDYYDTLFKDSKDKYDLYDDITVNNIHVYFDTYDPKKDSYKVFVQFDERIETDGDDKIEHRQTSAQLDLVRTAEGWRIDNLKRFNLKPLGR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP029652_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029652_4

2290135-2290223

Orphan

Consensus_repeat	Method
TGCATAAGAGCCCCTAACAACTAAAGTTTAAG	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NZ_CP029652_4

>merge|NZ_CP029652|4|2290135-2290223|CRISPRCasFinder
TGCATAAGAGCCCCTAACAACTAAAGTTTAAGAGTAGGAGCGCCTGCGCTAAGCGCATGCATAAGAGCCCCTAACAACTAAAGTTGTAA

>NZ_CP029652|4|3|2290135-2290223|CRISPRCasFinder
TGCATAAGAGCCCCTAACAACTAAAGTTTAAG	AGTAGGAGCGCCTGCGCTAAGCGCA
TGCATAAGAGCCCCTAACAACTAAAGTTGTAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029652.1\|WP_001292154.1\|2281186_2281621_-\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|227014
NZ_CP029652.1\|WP_001024099.1\|2293044_2293710_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187554
NZ_CP029652.1\|WP_000894031.1\|2269801_2270734_+\|YbbR-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|227193
NZ_CP029652.1\|WP_000003759.1\|2292572_2292893_-\|Zn(II)-responsive-metalloregulatory-transcriptional-repressor-CzrA	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
NZ_CP029652.1\|WP_000648721.1\|2280080_2281187_-\|mannitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|235031
NZ_CP029652.1\|WP_000160304.1\|2299026_2299737_-\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180275
NZ_CP029652.1\|WP_001123306.1\|2297849_2298263_+\|thiol-disulfide-oxidoreductase-DCC-family-protein	unknown	unknown	gnl\|CDD\|225556
NZ_CP029652.1\|WP_001127960.1\|2294145_2295084_+\|class-I-mannose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|224399
NZ_CP029652.1\|WP_000083802.1\|2283799_2285350_-\|PTS-mannitol-transporter-subunit-IICB	unknown	unknown	gnl\|CDD\|225123
NZ_CP029652.1\|WP_000019731.1\|2291593_2292571_-\|CDF-family-zinc-efflux-transporter-CzrB	unknown	unknown	gnl\|CDD\|224151
NZ_CP029652.1\|WP_000808821.1\|2295114_2295345_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029652.1\|WP_000927352.1\|2281632_2283765_-\|BglG-family-transcription-antiterminator	unknown	unknown	gnl\|CDD\|226234
NZ_CP029652.1\|WP_000220897.1\|2289922_2290015_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029652.1\|WP_000495676.1\|2290236_2291328_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029652.1\|WP_000123402.1\|2296018_2297392_+\|EVE-domain-containing-protein	unknown	unknown	gnl\|CDD\|376640
NZ_CP029652.1\|WP_000908197.1\|2288068_2288851_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224044
NZ_CP029652.1\|WP_070992207.1\|2288918_2289776_+\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|223635
NZ_CP029652.1\|WP_000334465.1\|2286030_2287836_+\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	unknown	unknown	gnl\|CDD\|234729
NZ_CP029652.1\|WP_000521495.1\|2270760_2272116_+\|phosphoglucosamine-mutase	unknown	unknown	gnl\|CDD\|237670
NZ_CP029652.1\|WP_000070865.1\|2298462_2298906_+\|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl\|CDD\|223854

Protein	Function_ID	Function_description	E-value
NZ_CP029652.1\|WP_001292154.1\|2281186_2281621_-\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|227014	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism].	1.48113e-62
NZ_CP029652.1\|WP_001024099.1\|2293044_2293710_+\|SDR-family-oxidoreductase	gnl\|CDD\|187554	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5. This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	7.27205e-48
NZ_CP029652.1\|WP_000894031.1\|2269801_2270734_+\|YbbR-like-domain-containing-protein	gnl\|CDD\|227193	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown].	2.84316e-117
NZ_CP029652.1\|WP_070992207.1\|2288918_2289776_+\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|223635	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only].	8.6913e-60
NZ_CP029652.1\|WP_000648721.1\|2280080_2281187_-\|mannitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|235031	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional.	0
NZ_CP029652.1\|WP_000160304.1\|2299026_2299737_-\|purine-nucleoside-phosphorylase	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	2.10672e-157
NZ_CP029652.1\|WP_001123306.1\|2297849_2298263_+\|thiol-disulfide-oxidoreductase-DCC-family-protein	gnl\|CDD\|225556	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only].	1.9904e-45
NZ_CP029652.1\|WP_001127960.1\|2294145_2295084_+\|class-I-mannose-6-phosphate-isomerase	gnl\|CDD\|224399	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism].	7.24075e-129
NZ_CP029652.1\|WP_000083802.1\|2283799_2285350_-\|PTS-mannitol-transporter-subunit-IICB	gnl\|CDD\|225123	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism].	0
NZ_CP029652.1\|WP_000019731.1\|2291593_2292571_-\|CDF-family-zinc-efflux-transporter-CzrB	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	1.21832e-107
NZ_CP029652.1\|WP_000927352.1\|2281632_2283765_-\|BglG-family-transcription-antiterminator	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	8.3983e-66
NZ_CP029652.1\|WP_000123402.1\|2296018_2297392_+\|EVE-domain-containing-protein	gnl\|CDD\|376640	pfam01878, EVE, EVE domain. This domain was formerly known as DUF55. Crystal structures have shown that this domain is part of the PUA superfamily. This domain has been named EVE and is thought to be RNA-binding.	3.86989e-06
NZ_CP029652.1\|WP_000908197.1\|2288068_2288851_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224044	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism].	5.2134e-106
NZ_CP029652.1\|WP_000003759.1\|2292572_2292893_-\|Zn(II)-responsive-metalloregulatory-transcriptional-repressor-CzrA	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	1.8473e-17
NZ_CP029652.1\|WP_000334465.1\|2286030_2287836_+\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
NZ_CP029652.1\|WP_000521495.1\|2270760_2272116_+\|phosphoglucosamine-mutase	gnl\|CDD\|237670	PRK14316, glmM, phosphoglucosamine mutase; Provisional.	0
NZ_CP029652.1\|WP_000070865.1\|2298462_2298906_+\|DNA-starvation/stationary-phase-protection-protein	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	5.87929e-68

>NZ_CP029652.1|WP_000220897.1|2289922_2290015_-|hypothetical-protein
MTYGSIIAIACALFVIFFIPYMEKNNKKKK
>NZ_CP029652.1|WP_070992207.1|2288918_2289776_+|Cof-type-HAD-IIB-family-hydrolase
MDNVKAIFLDMDGTILHENNQASTYTKDVINRLIEKGYKVFLATGRSHSEIHQLVPQVFAVNGIISSNGTIGEVDGEIIFKHGLSLAQVQQIINLAKRQQIYYEVFPFEGNRVSLKEDETWMRDMIRSQDPINGVSHSEWSSRQDALAGKIDWVTKFPEGEYSKIYLFSSNLEKITAFRNELKQNHVQLQISVSNSSRFNAETMAYQTDKGTGIKEMIEHFGINQEETLVIGDSDNDRAMFEFGHYTVAMKNARPEIQALTSDVTAYTNEEDGAAKYLAKHFLAD
>NZ_CP029652.1|WP_000908197.1|2288068_2288851_+|ABC-transporter-ATP-binding-protein
MLIQLEQVGRMKQGKTILKNISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATTGGVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDKVRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITGNFTKILLLKDGESVQQGLIDDILTSENMSYFFRKKVAVQRWNNRFSMAMLE
>NZ_CP029652.1|WP_000334465.1|2286030_2287836_+|glutamine--fructose-6-phosphate-transaminase-(isomerizing)
MCGIVGYIGYDNAKELLLKGLEKLEYRGYDSAGIAVVNDDNTTVFKEKGRIAELRKVADSSDFDGPVGIGHTRWATHGVPNHENSHPHQSSNGRFTLVHNGVIENYEELKGEYLQGVSFISETDTEVIVQLVEYFSNQGLSTEEAFTKVVSLLHGSYALGLLDAEDKDTIYVAKNKSPLLLGVGEGFNVIASDALAMLQVTSEYKEIHDHEIVIVKKDEVIIKDADGNVVERDSYIAEIDASDAEKGVYAHYMLKEIHEQPAVMRRIIQEYQDAEGNLKIDQDIINDVKEADRIYVIAAGTSYHAGLVGKEFLEKWAGVPTEVHVASEFVYNMPLLSEKPLFVYISQSGETADSRAVLVETNKLGHKSLTITNVAGSTLSREADHTLLLHAGPEIAVASTKAYTAQIAVLSILSQIVAKEHGREADIDLLRELAKVTTAIEAIVDDAPIMEQIATDFLETTRNAFFIGRTIDYNVSLEGALKLKEISYIQAEGFAGGELKHGTIALIEEGTPVVGLATQEKVNLSIRGNVKEVVARGAHPCIISMEGLEKEGDTYVIPHVHELLTPLVSVVALQLISYYAALHRDLDVDKPRNLAKSVTVE
>NZ_CP029652.1|WP_000083802.1|2283799_2285350_-|PTS-mannitol-transporter-subunit-IICB
MSQTEEKKGIGRRVQAFGSFLSSMIMPNIGAFIAWGFIAAIFIDNGWLPNKDLATLAGPMITYLIPLLIAFSGGRLIYDLRGGIIAATATMGVIVALPDTPMLLGAMIMGPLVGWLMKKTDQLIQPRTPQGFEMLFNNFSAGILGFIMTIAGFKILAPLMKFIMHILSVAVEALVHAHLLPLVSILVEPAKIVFLNNAINHGVFTPLGADQAAKAGQSILYTIESNPGPGLGILLAYMIFGKGTAKATSYGAGIIHFFGGIHEIYFPYVLMRPLLFIAVILGGMTGVATYQATGFGFKSPASPGSFIVYCLNAPRGEFLHMLLGVFLAALVSFVVAALIMKFTKEPKQDLEAATAQMETTKGKKSSVASKLVSSDKDAEVEANASTEAKTNADVTSTLEDDPEALLDNYNTEDVDAHNYNNIDHVIFACDAGMGSSAMGASMLRNKFKKAGINDITVTNTAINQLPKDAQLVITQKKLTDRAIKQTPNAIHISVDNFLNSPRYEELLNNLKKDDQA
>NZ_CP029652.1|WP_000927352.1|2281632_2283765_-|BglG-family-transcription-antiterminator
MLLSTREKEMIALLIKYHGQYITIHDIAQQLAVSSRTIHRELKGVEAYLTSFSLTLERANKKGLRIAGEESDLNDLKQSIAKHQTIDLSVEEQKVIIIYALIQAKEPVKQYSLAQEIGVSVQTLAKMLDDLELDLNKYQLSLSRKRGEGIYLVGTESKKREFLSQLMVNNLNSTSVYSVIENHFVFHSLNQIHKDFVDLERIFNVERLLMDYLSALPYQLTESSYLTLTVHIVLSISRIKNGEYVALNDDIYDSVQNTFEHKVASELADKLGQIYDVTFNQAEIAFITIHLRGAKRKNLNDTSVNNRCEENKIKAFVKKVEMISGMTFADLDTLVDGLTLHLNPAINRLQANIETYNPLTDMIKFKYPRLFENVRLALNDSWPDLIFPESEIAFIVLHFGGSIKNQGNRFLNILVVCSSGMGTSRLLSTRLEQVFSEIECITQASVSDLKSLDLSQYDGIISTVNLDIDSPYLTVNPLLPDSDISYVAQFLNTKSTFQETHDQSSNMIDKNDVHVETKDIDGNTSFENEQTSYLTSIFEKHLSDEKSEQLMHHMRSGLTLLDSVKIVSTEVKQWQTYIADYLYQSDVINDPTSFAELLEQRLIDNPGWILSPYPVAIPHLRDNMIKHPMILITVLEEPLTLPSIQNDNQTIKYMISMFIPDNDFMASLVSDLSEFLSLKLESIDTFMENPQELETLLRNKFLERIKKQFI
>NZ_CP029652.1|WP_001292154.1|2281186_2281621_-|PTS-sugar-transporter-subunit-IIA
MSELFSNDNIFLNVNVNSQNEAIEQAGKALVDSGAVTDAYIQAMKDREQVVSTFMGNGLAIPHGTDEAKTNVIHSGLTLLQIPEGVDWDGEVVKVVVGIAGKDGEHLDLLSKIAITFSEEENVDRIVQAKSAEEIKQVFEEADA
>NZ_CP029652.1|WP_000648721.1|2280080_2281187_-|mannitol-1-phosphate-5-dehydrogenase
MKAVHFGAGNIGRGFIGYILADNNVKVTFADVNEEIINALAHDHQYDVILADESKTTTRVNNVDAINSMQPSEALKQAILEADIITTAVGVNILPIIAKSFAPFLKEKTNHVNIVACENAIMATDTLKKAVLDITGPLGNNIHFANSAVDRIVPLQKNENILDVMVEPFYEWVVEKDAWYGPELNHIKYVDDLTPYIERKLLTVNTGHAYLAYAGKFAGKATVLDAVKDSSIEAGLRRVLAETSQYITNEFDFTEAEQAGYVEKIIDRFNNSYLSDEVTRVGRGTLRKIGPKDRIIKPLTYLYNKDLERTGLLNTAALLLKYDDTADQETVEKNNYIKEHDLKAFLSEYAKVDDGLADEIIEAYNSLS
>NZ_CP029652.1|WP_000521495.1|2270760_2272116_+|phosphoglucosamine-mutase
MGKYFGTDGVRGVANQELTPELAFKLGRYGGYVLAHNKGEKHPRVLVGRDTRVSGEMLESALIAGLISIGAEVMRLGIISTPGVAYLTRDMGAELGVMISASHNPVADNGIKFFGSDGFKLSDEQENEIEALLDQENPELPRPVGNDIVHYSDYFEGAQKYLSYLKSTVDVNFEGLKIVLDGANGSTSSLAPFLFGDLEADTETIGCSPDGYNINEKCGSTHPEKLAEKVVETESDFGLAFDGDGDRIIAVDENGQIVDGDQIMFIIGQEMHKNQELNNDMIVSTVMSNLGFYKALEQEGIKSNKTKVGDRYVVEEMRRGNYNLGGEQSGHIVMMDYNTTGDGLLTGIQLASVIKMTGKSLSELAGQMKKYPQSLINVRVTDKYRVEENVDVKEVMTKVEVEMNGEGRILVRPSGTEPLVRVMVEAATDEDAERFAQQIADVVQDKMGLDK
>NZ_CP029652.1|WP_000894031.1|2269801_2270734_+|YbbR-like-domain-containing-protein
MLESKWGLRFIAFLLALFFFLSVNNVFGNIFNTGNLGQKSSKTIQDVPVEILYNTKDLHLTKAPETVNVTISGPQSKIIKIENPEDLRVVIDLSNAKAGKYQEKYQVKGLADDIHYSVKPKLANITLENKVTKKMTVQPDVSQSDIDPLYKITKQEVSPQTVKVTGGEEQLNDIAYLKATFKTNKKINGDTKDIAEVTAFDKKLNKLNVSIQPNEVNLQVKVEPFSKKVKVNVKQKGSLADDKELSSIELEDKEIEIFGSRDDLQNIGEVDAEVDLDGISESTEKTVKINLPEHVTKAEPSETKAYINVK
>NZ_CP029652.1|WP_000495676.1|2290236_2291328_-|hypothetical-protein
MFTYFKSAFKNAKPQLLITLIYALIAFAVIAVVYLLANFQLAKYVQTIAIYSQFGQKPPGDAYLKVIAVLLIAAVVSLFVLAQIFIGITNVMKRAMSHEKVKFTNLFIAFKKGNYLKSVLIGLVSVAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHLVGIAITTQSIIIIVVLLIKAIITWLLLIPVFNIMTSFVESTNDKVKTHLANGFKAMKNGQKTFFKFFIGILLLNLIIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVMTIILFVVIHAIILMGIVQYYLKRGQKITKDKVKAADKNKKVVTEPKNTKVENDKVTTSVETKTEKAQDSLNDNTTKTMTSDKPEDNQPK
>NZ_CP029652.1|WP_000019731.1|2291593_2292571_-|CDF-family-zinc-efflux-transporter-CzrB
MSHSHHHDHMHSHVTTNNKKVLFISFLIIGLYMFIEIIGGLLANSLALLSDGIHMFSDTFSLGVALIAFIYAEKNATATKTFGYKRFEVLAALFNGVTLFVISILIVFEAIKRFFVPSEVQSKEMLIISIIGLIVNIVVAFFMFKGGDTSHNLNMRGAFLHVIGDLLGSVGAITAAILIWAFGWTIADPIASILVSVIILKSAWGITKSSINILMEGTPSDVDIDEVITTIKKDSRIQSVHDCHVWTISNDMNALSCHVVVDHTLTMKECELLLENIEHDLLHLNIHHMTIQLETPNHKHDESIICSGTHSHSHNHHAHHHAHVH
>NZ_CP029652.1|WP_000003759.1|2292572_2292893_-|Zn(II)-responsive-metalloregulatory-transcriptional-repressor-CzrA
MSEQYSEINTDTLERVTEIFKALGDYNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLKQAIHHANHPKESGL
>NZ_CP029652.1|WP_001024099.1|2293044_2293710_+|SDR-family-oxidoreductase
MNILVIGANGGVGSLLVQQLAKENVPFTAGVRQSDQLNALKSQGMKAILVDVENDSIETLTETFKPFDKVIFSVGSGGNTGADKTIIVDLDGAVKSMIASKEANIKHYVMVSTYDSRRQAFDDSGDLKPYTIAKHYADDYLRRSGLNYTILHPGALTNAAGSGKIEAAQYFEGKGEIPREDVATVLKEIVTSNHFNHQEFQIISGDQDIKDALTQFENETD
>NZ_CP029652.1|WP_001127960.1|2294145_2295084_+|class-I-mannose-6-phosphate-isomerase
MPLFLQPILKTKLWGGQRLSEFGYQLDNDTTGECWCVSAHPNGTSEIINGPYQGQTLDRIWSEHRELFGDFPSKDFPLLTKIVDARESLSIHVHPDNSYAYEHENGQYGKSECWYIIDAEEDAEIVIGTLAESREEVANHVQHGTIESILRYIKVKPGEFYFIPAGTVHTISSGILAYETMQSSDITYRLYDFNRQDNQYNDRPLNIEKALDVIQYNAPLPNILPESEIIENHKCTHIVSNDFFTLVKWEISGTLNYMKPREFCLVTVLEGEGQMIVDGEIFKLTTGTNFILTSEDLDSVFEGDFTLMISYV
>NZ_CP029652.1|WP_000808821.1|2295114_2295345_+|hypothetical-protein
MKQFLYIALVCGVIAGLGAFVHIPQYPSMTIPRIVAILGIISAMLTFKDKQISASLKFSALLINVLPLCGTFVASN
>NZ_CP029652.1|WP_000123402.1|2296018_2297392_+|EVE-domain-containing-protein
MTAETNYFWLNCGYNRWNHNEPLVGQTALFESGAHFNPSQGFRAFKKAKVGDQVIFYQVQTDTGLLGCGEIISVETGAQNKIRVQFRFNEQLKPLTADYLKRSEALEFRMSNMKETLFNQITAEEFDLISGLGKGEIKIPRYFFLAETEEFEPGNQYTIYTHTYNGIKRNGYHFYTQLEEGDNIIFYNRTKNQSVVGIGEVSKHIHEKPPIPGRTNSTVIEVSYEKDITPITLSTLNKHPKLKNLYFLQENAKQAIASMSQAQYDAIIEMSDNNGLKSPFEMVQKPDMLESEKEEALKPFILLVVDRKEEGLKAANDLLQKANANPVITTGHPDFSEDMLYGKYLPNETGALYYREGFITQLMPKKDKSYLVIDNFNRIDTDIFQTYINVLEGYEVTLPRYNKDGNMIKWSRQKDSFYYFNPNWHIVGITYDSLEEIKEKYSEQFLKYTRIVKVKHD
>NZ_CP029652.1|WP_001123306.1|2297849_2298263_+|thiol-disulfide-oxidoreductase-DCC-family-protein
MPIVYYDGNCIYCYNYVIWLIQHDLPRNYQFATLKGEVGQQFFKQHPEAANKNSVILQKGDRIYFESQAIIQLITALPNRTKLLGVGLWLVPKPVRNFGYRMFANNRNRMWKTTWHQPNDYEKSFFLDDNAKVKLTD
>NZ_CP029652.1|WP_000070865.1|2298462_2298906_+|DNA-starvation/stationary-phase-protection-protein
MSNQQDVVKELNQQVANWTVAYTKLHNFHWYVKGPNFFSLHVKFEELYNEASQYVDELAERILAVGGNPVGTLTECLEQSIVKEAAKGYSAEQMVEELSQDFTNISKQLEKAIEIAGNAGDDVSEDMFIGMQTSVDKHNWMFKSYLS
>NZ_CP029652.1|WP_000160304.1|2299026_2299737_-|purine-nucleoside-phosphorylase
MTKGTPHIQPNGVKIAKTVLMPGDPLRAKYIADNFLENVEQFNDVRNMFGYTGTYKGKEVSVMGSGMGIPSIGIYSYELYNFFDVDTIIRIGSCGALQENVNLYDVIIAQAASTNSNYVDQYNIPGHFAPIADFELVTKAKNVADQIGATTHVGNVLSSDTFYNADPTFNDAWKKMGILGIEMESAGLYLNAIHAGKKALGIFTVSDHILRDEATTPEERQNSFTQMMEIALEIAE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP029652_2	2.1\|2159216\|35\|NZ_CP029652\|CRISPRCasFinder	2159216-2159250	35	NZ_CP029652.1	522910-522944	1	0.971
NZ_CP029652_2	2.1\|2159216\|35\|NZ_CP029652\|CRISPRCasFinder	2159216-2159250	35	NZ_CP029652.1	623348-623382	1	0.971
NZ_CP029652_2	2.1\|2159216\|35\|NZ_CP029652\|CRISPRCasFinder	2159216-2159250	35	NZ_CP029652.1	828213-828247	1	0.971
NZ_CP029652_2	2.1\|2159216\|35\|NZ_CP029652\|CRISPRCasFinder	2159216-2159250	35	NZ_CP029652.1	2170022-2170056	1	0.971
NZ_CP029652_2	2.1\|2159216\|35\|NZ_CP029652\|CRISPRCasFinder	2159216-2159250	35	NZ_CP029652.1	2393597-2393631	1	0.971
NZ_CP029652_2	2.1\|2159216\|35\|NZ_CP029652\|CRISPRCasFinder	2159216-2159250	35	NZ_CP029652.1	736355-736389	2	0.943
NZ_CP029652_2	2.1\|2159216\|35\|NZ_CP029652\|CRISPRCasFinder	2159216-2159250	35	NZ_CP029652.1	2519118-2519152	2	0.943

1. spacer 2.1|2159216|35|NZ_CP029652|CRISPRCasFinder matches to position: 522910-522944, mismatch: 1, identity: 0.971

cagaaggtgacgaaaagtcagcttacaataatgtg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatgtg	Protospacer
****** ****************************

2. spacer 2.1|2159216|35|NZ_CP029652|CRISPRCasFinder matches to position: 623348-623382, mismatch: 1, identity: 0.971

cagaaggtgacgaaaagtcagcttacaataatgtg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatgtg	Protospacer
****** ****************************

3. spacer 2.1|2159216|35|NZ_CP029652|CRISPRCasFinder matches to position: 828213-828247, mismatch: 1, identity: 0.971

cagaaggtgacgaaaagtcagcttacaataatgtg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatgtg	Protospacer
****** ****************************

4. spacer 2.1|2159216|35|NZ_CP029652|CRISPRCasFinder matches to position: 2170022-2170056, mismatch: 1, identity: 0.971

cagaaggtgacgaaaagtcagcttacaataatgtg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatgtg	Protospacer
****** ****************************

5. spacer 2.1|2159216|35|NZ_CP029652|CRISPRCasFinder matches to position: 2393597-2393631, mismatch: 1, identity: 0.971

cagaaggtgacgaaaagtcagcttacaataatgtg	CRISPR spacer
cagaaggtgacgaaaagtcagcatacaataatgtg	Protospacer
********************** ************

6. spacer 2.1|2159216|35|NZ_CP029652|CRISPRCasFinder matches to position: 736355-736389, mismatch: 2, identity: 0.943

cagaaggtgacgaaaagtcagcttacaataatgtg	CRISPR spacer
cagaagctggcgaaaagtcagcttacaataatgtg	Protospacer
****** **.*************************

7. spacer 2.1|2159216|35|NZ_CP029652|CRISPRCasFinder matches to position: 2519118-2519152, mismatch: 2, identity: 0.943

cagaaggtgacgaaaagtcagcttacaataatgtg	CRISPR spacer
cagaagctgacgaaaagtcagcttacgataatgtg	Protospacer
****** *******************.********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

61850 : 70162

Caulobacter_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001217237.1\|61850_63650_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	1.3e-53	36.0
WP_001283055.1\|63873_64980_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.1e-37	38.1
WP_103151972.1\|65110_65788_+\|tRNA	tRNA (adenine-N(1))-methyltransferase	NA	NA	NA	NA
WP_000683915.1\|65790_66891_+	Nif3-like dinuclear metal center hexameric protein	A0A1S5V250	Saudi_moumouvirus	3.0e-08	30.6
WP_001062177.1\|67004_68351_+	DEAD/DEAH box helicase	A0A1V0SIR5	Klosneuvirus	2.4e-55	34.0
WP_000924214.1\|68360_69251_+	deoxyribonuclease IV	A0A2H4UU70	Bodo_saltans_virus	2.0e-26	33.1
WP_001213908.1\|69376_70162_+	metal ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.0e-19	28.3

DBSCAN-SWA_2

343412 : 357867

Staphylococcus_phage(55.0%)

capsid,terminase,integrase,portal

attL 340560:340577|attR 364028:364045

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
340560:340577	attL	NA	NA	NA	NA
WP_078064715.1\|343412_344354_-\|capsid	minor capsid protein	Q4ZE35	Staphylococcus_virus	5.0e-52	70.4
WP_000158569.1\|344883_346332_-\|portal	phage portal protein	Q4ZE36	Staphylococcus_virus	1.9e-196	69.6
WP_000207540.1\|346344_347619_-\|terminase	PBSX family phage terminase large subunit	Q4ZE37	Staphylococcus_virus	4.2e-195	76.4
WP_000090969.1\|347605_348034_-	helix-turn-helix domain-containing protein	A1EAE0	Streptococcus_phage	1.1e-25	45.1
WP_110183612.1\|348210_348675_-	RNA polymerase subunit sigma-70	R9TMH4	Paenibacillus_phage	2.4e-07	27.7
WP_000835356.1\|348951_349416_-	hypothetical protein	C9E2P0	Enterococcus_phage	2.5e-20	43.7
WP_000185174.1\|349657_350188_-	nucleotide pyrophosphohydrolase	A0A1P8VVP1	Streptococcus_phage	8.0e-23	39.1
WP_000860977.1\|350180_350492_-	hypothetical protein	NA	NA	NA	NA
WP_000714365.1\|350497_350656_-	hypothetical protein	A0A0E3T9L7	Staphylococcus_phage	7.9e-19	90.4
WP_000945229.1\|350670_350961_-	hypothetical protein	A0A223LIA9	Staphylococcus_phage	5.5e-18	58.1
WP_000929467.1\|350961_351900_-	DnaD domain protein	A0A1P8L6F0	Staphylococcus_phage	4.8e-47	48.1
WP_076679818.1\|351913_352408_-	single-stranded DNA-binding protein	A7TWM8	Staphylococcus_phage	9.9e-84	94.0
WP_000818736.1\|352488_353268_-	ATP-binding protein	A0A1W6JPW0	Staphylococcus_phage	9.3e-129	88.8
WP_001004328.1\|353268_353805_-	hypothetical protein	A0A0H3U480	Staphylococcus_phage	1.1e-75	81.4
WP_000786635.1\|353809_354076_-	hypothetical protein	A0A2I6PDG2	Staphylococcus_phage	3.9e-18	53.6
WP_000786995.1\|354065_354383_-	DUF2482 family protein	W5RAK4	Staphylococcus_phage	1.6e-39	80.6
WP_000072840.1\|354469_354631_-	DUF1270 family protein	R4IH12	Staphylococcus_phage	1.1e-12	69.8
WP_000789021.1\|354801_355083_-	hypothetical protein	NA	NA	NA	NA
WP_000842951.1\|355130_355343_-	DUF739 family protein	A0A2I6PDH8	Staphylococcus_phage	6.8e-26	83.3
WP_001083979.1\|355504_355870_+	helix-turn-helix domain-containing protein	R9QTP6	Staphylococcus_phage	1.8e-21	47.9
WP_000554409.1\|356016_356400_+	hypothetical protein	NA	NA	NA	NA
WP_001183755.1\|356411_357107_+	hypothetical protein	A0A2H4J5B8	uncultured_Caudovirales_phage	2.1e-07	51.5
WP_000146714.1\|357159_357867_+\|integrase	tyrosine-type recombinase/integrase	V9QKF1	Oenococcus_phage	4.7e-10	26.2
364028:364045	attR	NA	NA	NA	NA

DBSCAN-SWA_3

613227 : 621700

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000238657.1\|613227_613794_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	8.0e-29	39.6
WP_000030827.1\|613796_614825_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.2e-62	41.7
WP_000483713.1\|614817_616302_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.2e-45	31.7
WP_000032752.1\|616280_618470_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	3.5e-141	39.8
WP_000666803.1\|618462_619134_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA
WP_000848350.1\|619135_619399_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_000174048.1\|619398_620103_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4R1E8	Synechococcus_phage	4.0e-46	41.2
WP_001010404.1\|620106_621231_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_001622461.1\|621217_621700_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	8.0e-22	44.7

DBSCAN-SWA_4

774286 : 820125

Staphylococcus_phage(72.46%)

head,terminase,plate,portal,capsid,integrase,holin

attL 767385:767400|attR 824792:824807

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
767385:767400	attL	NA	NA	NA	NA
WP_000382163.1\|774286_774487_-	hypothetical protein	W5R9N2	Staphylococcus_phage	3.7e-29	100.0
WP_000139425.1\|774473_774584_-	hypothetical protein	W5R8J7	Staphylococcus_phage	3.8e-12	97.2
WP_001788502.1\|774654_774807_-	hypothetical protein	A0A0F6N3H2	Staphylococcus_phage	3.1e-20	100.0
WP_103152045.1\|775049_776495_-	CHAP domain-containing protein	Q08JW9	Staphylococcus_phage	1.1e-292	99.0
WP_000354132.1\|776475_776913_-\|holin	phage holin	A0A2H4PQP0	Staphylococcus_phage	4.1e-73	100.0
WP_000398878.1\|776969_777365_-	hypothetical protein	Q4ZBP5	Staphylococcus_phage	2.7e-68	100.0
WP_070854325.1\|777369_778608_-\|plate	BppU family phage baseplate upper protein	A0A0F6N3G7	Staphylococcus_phage	3.2e-208	98.3
WP_070992115.1\|778620_780495_-	CHAP domain-containing protein	A0A0H4IPY7	Staphylococcus_phage	0.0e+00	99.0
WP_000466777.1\|780631_780931_-	DUF2951 domain-containing protein	A0A0F6N3M6	Staphylococcus_phage	9.9e-47	100.0
WP_000782200.1\|780970_781144_-	XkdX family protein	A0A0F6N3L7	Staphylococcus_phage	6.6e-27	100.0
WP_000705910.1\|781147_781525_-	DUF2977 domain-containing protein	Q9FZY7	Staphylococcus_virus	1.2e-60	100.0
WP_070992114.1\|781524_783348_-\|plate	BppU family phage baseplate upper protein	Q4ZBH7	Staphylococcus_virus	8.7e-311	97.9
WP_070992113.1\|783347_785246_-	hypothetical protein	Q4ZBX7	Staphylococcus_virus	0.0e+00	98.6
WP_001144700.1\|785258_787145_-	peptidase	A7YGW3	Staphylococcus_virus	0.0e+00	100.0
WP_015978299.1\|787155_788091_-	hypothetical protein	Q4ZBI0	Staphylococcus_virus	8.2e-180	100.0
WP_031927510.1\|788105_791075_-\|terminase	terminase	Q4ZBI1	Staphylococcus_virus	1.0e-263	99.8
WP_050482623.1\|791077_791419_-	hypothetical protein	A0A2H4PQL5	Staphylococcus_phage	9.3e-41	76.1
WP_103152043.1\|791439_791934_-	hypothetical protein	A0A0H4IPX9	Staphylococcus_phage	5.6e-87	99.4
WP_000046067.1\|791995_792556_-	hypothetical protein	A0A0H4ITY2	Staphylococcus_phage	5.9e-101	100.0
WP_015978307.1\|792542_792980_-	DUF3168 domain-containing protein	Q4ZBI5	Staphylococcus_virus	2.1e-77	100.0
WP_001151332.1\|792992_793406_-	HK97 gp10 family phage protein	A0A0E3XCY8	Staphylococcus_phage	1.5e-77	100.0
WP_070992111.1\|793392_793728_-\|head	phage head closure protein	Q4ZAA0	Staphylococcus_virus	2.6e-59	98.2
WP_015978284.1\|793720_794035_-	ORF047	Q4ZBR3	Staphylococcus_phage	2.6e-53	100.0
WP_070992110.1\|794034_794361_-	Rho termination protein	Q4ZAA2	Staphylococcus_virus	8.3e-47	94.4
WP_070992109.1\|794377_795190_-\|capsid	major capsid protein	A0A2H4PQL1	Staphylococcus_phage	3.1e-143	98.9
WP_070992108.1\|795206_795797_-	hypothetical protein	A0A2H4PQL3	Staphylococcus_phage	2.4e-76	98.5
WP_000346033.1\|795901_796108_-	hypothetical protein	A0A0N9BB04	Staphylococcus_phage	3.2e-28	100.0
WP_049886451.1\|796109_797093_-\|capsid	minor capsid protein	A0A0N7E0U6	Staphylococcus_phage	6.8e-169	96.5
WP_064131508.1\|797031_798510_-\|portal	phage portal protein	A0A0E3T8M2	Staphylococcus_phage	3.1e-282	99.0
WP_070992107.1\|798463_799672_-\|terminase	PBSX family phage terminase large subunit	R4IG95	Staphylococcus_phage	1.8e-235	99.8
WP_029656172.1\|799664_799982_-	hypothetical protein	A0A2I6PCU5	Staphylococcus_phage	7.3e-48	95.2
WP_000286968.1\|800513_800915_-	hypothetical protein	A0A2H4PQK5	Staphylococcus_phage	5.6e-69	100.0
WP_064140002.1\|800915_801089_-	transcriptional regulator	A0A0H4ISR0	Staphylococcus_phage	9.2e-21	94.7
WP_000195791.1\|801085_801292_-	DUF1381 domain-containing protein	A0A0H4IPW6	Staphylococcus_phage	4.5e-30	100.0
WP_001282070.1\|801288_801534_-	hypothetical protein	A0A0H4ITX2	Staphylococcus_phage	2.0e-37	100.0
WP_070992105.1\|801570_802104_-	dUTP pyrophosphatase	Q4ZCN7	Staphylococcus_virus	3.5e-95	99.4
WP_070992104.1\|802096_802345_-	DUF1024 family protein	A0A2H4PQK1	Staphylococcus_phage	4.5e-37	95.1
WP_015978314.1\|802337_802613_-	hypothetical protein	Q4ZBD3	Staphylococcus_virus	2.3e-45	100.0
WP_015978309.1\|802612_803017_-	hypothetical protein	A0A0H4IPW3	Staphylococcus_phage	1.6e-71	100.0
WP_000131387.1\|803030_803273_-	hypothetical protein	A0A1P8L6E3	Staphylococcus_phage	1.1e-40	98.8
WP_000029376.1\|803276_803633_-	hypothetical protein	A0A0F6N3E3	Staphylococcus_phage	6.5e-61	100.0
WP_000101252.1\|803760_804066_-	hypothetical protein	A0A0F6N4H9	Staphylococcus_phage	1.7e-49	100.0
WP_001187243.1\|804066_804252_-	DUF3113 family protein	A0A0F6N3K7	Staphylococcus_phage	1.1e-27	100.0
WP_000049794.1\|804256_804661_-	DUF1064 domain-containing protein	A1KX76	Staphylococcus_virus	9.6e-69	100.0
WP_001123664.1\|804670_804892_-	DUF3269 family protein	Q9G021	Staphylococcus_phage	4.9e-35	98.6
WP_001024401.1\|804894_805110_-	hypothetical protein	A9CR72	Staphylococcus_phage	1.5e-33	95.8
WP_070992102.1\|805106_806348_-	AAA family ATPase	A0A0E3T8L1	Staphylococcus_phage	2.0e-226	98.5
WP_070033532.1\|806700_807510_-	DnaD domain protein	Q4ZBE3	Staphylococcus_virus	6.1e-107	97.8
WP_070992101.1\|807481_808177_-	hypothetical protein	A0A2I6PDA6	Staphylococcus_phage	3.5e-127	97.7
WP_031897944.1\|808188_808623_-	single-stranded DNA-binding protein	A0A0H3U4B5	Staphylococcus_phage	1.0e-55	72.4
WP_000139725.1\|808622_809246_-	DUF1071 domain-containing protein	A0A2H4PQQ6	Staphylococcus_phage	5.2e-114	99.5
WP_000815403.1\|809238_809460_-	DUF2483 domain-containing protein	A0A1X9H047	Staphylococcus_phage	1.2e-33	100.0
WP_000291068.1\|809469_809730_-	DUF1108 family protein	C8CGY6	Staphylococcus_phage	8.9e-44	100.0
WP_000066011.1\|809821_809983_-	DUF1270 domain-containing protein	Q4ZAZ7	Staphylococcus_virus	2.5e-20	100.0
WP_000594789.1\|809975_810197_-	hypothetical protein	B2ZYU8	Staphylococcus_phage	8.7e-32	100.0
WP_015978329.1\|810267_810921_+	hypothetical protein	A0A0H4IPV1	Staphylococcus_phage	4.5e-116	100.0
WP_015978350.1\|810930_811074_-	hypothetical protein	A0A0H4ITW0	Staphylococcus_phage	1.9e-16	100.0
WP_070992099.1\|811089_811842_-	oxidoreductase	S4SW96	Staphylococcus_phage	3.7e-138	99.6
WP_000933365.1\|811843_812029_-	helix-turn-helix transcriptional regulator	A0A0H4IP57	Staphylococcus_phage	1.3e-25	100.0
WP_070992098.1\|812474_812957_+	hypothetical protein	A0A0N9BAX2	Staphylococcus_phage	4.1e-82	99.4
WP_000438352.1\|813057_813237_-	hypothetical protein	A0A0N9BAV3	Staphylococcus_phage	1.7e-25	100.0
WP_001121116.1\|813250_813487_-	helix-turn-helix transcriptional regulator	A0A0N9BAY2	Staphylococcus_phage	1.5e-37	100.0
WP_000333630.1\|813638_813953_+	helix-turn-helix transcriptional regulator	A0A0N9BAW4	Staphylococcus_phage	9.8e-53	100.0
WP_000525004.1\|813965_814427_+	hypothetical protein	A0A2K9VBR7	Staphylococcus_phage	1.2e-83	100.0
WP_015977901.1\|814610_815048_+	DUF4231 domain-containing protein	Q4ZE05	Staphylococcus_virus	2.0e-75	100.0
WP_015977903.1\|815041_815449_+	TIR domain-containing protein	Q4ZE06	Staphylococcus_virus	3.8e-73	100.0
WP_000074681.1\|815445_815643_-	hypothetical protein	Q4ZA73	Staphylococcus_virus	1.5e-30	100.0
WP_001145728.1\|815755_816805_+\|integrase	site-specific integrase	A1KWY3	Staphylococcus_virus	1.6e-203	100.0
WP_001074405.1\|816872_818270_-	Fe-S cluster assembly protein SufB	NA	NA	NA	NA
WP_001010508.1\|818420_818885_-	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA
WP_001006456.1\|818874_820125_-	cysteine desulfurase	Q2XUY6	environmental_halophage	2.4e-110	44.5
824792:824807	attR	NA	NA	NA	NA

DBSCAN-SWA_5

851572 : 870178

Staphylococcus_phage(63.16%)

terminase,integrase,coat

attL 851212:851263|attR 866833:866884

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
851212:851263	attL	NA	NA	NA	NA
WP_000746595.1\|851572_852295_+	exotoxin	A0A1X9H080	Staphylococcus_phage	2.1e-26	34.9
WP_000278088.1\|852461_853262_-	staphylococcal enterotoxin type C3	A0A097PAT7	Streptococcus_pyogenes_phage	6.1e-51	47.5
WP_001035616.1\|854049_854610_+	DUF4888 domain-containing protein	Q4ZBG8	Staphylococcus_virus	5.4e-62	68.1
WP_054194594.1\|855486_856191_+	toxic shock syndrome toxin TSST-1	NA	NA	NA	NA
WP_001293088.1\|856345_856915_-\|terminase	terminase small subunit	Q4ZE85	Staphylococcus_phage	7.9e-101	97.4
WP_000358778.1\|856911_857253_-	hypothetical protein	A0A1W6JQM3	Staphylococcus_phage	1.7e-58	100.0
WP_031875775.1\|857255_857783_-\|coat	spore coat protein	Q4ZE87	Staphylococcus_phage	5.4e-88	96.0
WP_000448775.1\|857833_858052_-	hypothetical protein	NA	NA	NA	NA
WP_000846282.1\|858069_858648_-	hypothetical protein	A0A2H4JBG0	uncultured_Caudovirales_phage	4.8e-29	38.9
WP_001190612.1\|858659_859001_-	hypothetical protein	Q4ZE66	Staphylococcus_phage	2.4e-57	98.2
WP_054194595.1\|859450_860092_-	pathogenicity island protein	Q4ZE67	Staphylococcus_phage	4.5e-113	94.8
WP_000998182.1\|860088_860373_-	hypothetical protein	A0A1W6JQE4	Staphylococcus_phage	1.0e-45	92.6
WP_001039168.1\|860374_860737_-	hypothetical protein	A0A1W6JQD5	Staphylococcus_phage	8.9e-66	99.2
WP_103152041.1\|861022_862492_-	virulence-associated protein E	A0A1W6JQD6	Staphylococcus_phage	2.9e-288	99.2
WP_001002687.1\|862508_863378_-	hypothetical protein	A0A1W6JQL5	Staphylococcus_phage	9.3e-162	96.5
WP_001103953.1\|863465_863759_-	DUF1474 family protein	A0A1W6JQH0	Staphylococcus_phage	8.9e-24	61.8
WP_000850930.1\|863759_864170_-	hypothetical protein	A0A2H4JBF1	uncultured_Caudovirales_phage	2.4e-59	85.8
WP_000163542.1\|864321_864540_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000272128.1\|864727_865657_+	helix-turn-helix transcriptional regulator	Q9AZH9	Lactococcus_phage	2.2e-12	35.6
WP_025174292.1\|865646_866756_+\|integrase	site-specific integrase	H0UST3	Bacillus_phage	1.2e-76	44.6
WP_001085185.1\|867319_867784_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	1.5e-81	100.0
866833:866884	attR	NA	NA	NA	NA
WP_110183619.1\|867805_870178_-	ribonuclease R	Q0GXV6	Lactococcus_phage	4.3e-92	38.8

DBSCAN-SWA_6

922623 : 936900

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000616861.1\|922623_923385_-	ATP-binding cassette domain-containing protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	2.7e-16	30.6
WP_054194600.1\|923381_924338_-	iron chelate uptake ABC transporter family permease subunit	A0A2H4J116	uncultured_Caudovirales_phage	1.2e-05	57.8
WP_000876313.1\|924324_925296_-	ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	1.0e-140	79.9
WP_000562500.1\|925670_926642_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	3.2e-171	91.3
WP_000855505.1\|926759_928865_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.7
WP_000692521.1\|928827_929226_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	1.2e-52	72.0
WP_001068497.1\|930027_930894_+	DMT family transporter	NA	NA	NA	NA
WP_000930014.1\|930913_931414_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	5.9e-52	71.5
WP_000193753.1\|931755_933261_+	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	2.6e-58	32.2
WP_031785486.1\|933338_933440_-	hypothetical protein	NA	NA	NA	NA
WP_000429016.1\|933530_934448_+	diacylglycerol kinase family lipid kinase	A0A1V0SBJ0	Catovirus	2.1e-07	22.4
WP_000197263.1\|935135_935684_-	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA
WP_000663021.1\|935841_936900_-	histidinol-phosphate transaminase	A0A0H3TLT9	Faustovirus	2.6e-20	26.9

DBSCAN-SWA_7

948876 : 956695

Pandoravirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001217805.1\|948876_950028_-	anthranilate synthase component I family protein	S4VNU7	Pandoravirus	2.1e-23	36.1
WP_000604517.1\|950011_950605_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	8.9e-39	44.0
WP_000446726.1\|950955_951624_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	7.4e-66	57.5
WP_000941336.1\|951625_952045_+	6-carboxytetrahydropterin synthase QueD	S4U060	uncultured_phage	6.3e-07	28.7
WP_001062976.1\|952048_952762_+	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	6.5e-52	43.5
WP_000637683.1\|952860_953445_+	hypothetical protein	NA	NA	NA	NA
WP_001093554.1\|953724_954165_+	DM13 domain-containing protein	NA	NA	NA	NA
WP_110183621.1\|954505_954979_+	DoxX family protein	NA	NA	NA	NA
WP_000149344.1\|954953_955640_+	response regulator transcription factor	NA	NA	NA	NA
WP_000244415.1\|955639_956695_+	HAMP domain-containing histidine kinase	A0A1V0SGX0	Hokovirus	3.6e-14	29.8

DBSCAN-SWA_8

2412685 : 2494155

104

Staphylococcus_phage(80.0%)

head,terminase,protease,tail,portal,capsid,integrase,holin

attL 2421500:2421517|attR 2445983:2446000

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000197627.1\|2412685_2413429_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_000917289.1\|2413603_2413888_+	co-chaperone GroES	A0A221S386	uncultured_virus	4.7e-14	46.2
WP_000240642.1\|2413963_2415580_+	chaperonin GroEL	A0A240F779	uncultured_virus	3.4e-157	54.7
WP_001045070.1\|2416140_2417448_-	TrkH family potassium uptake protein	NA	NA	NA	NA
WP_000206615.1\|2417843_2419067_-	ArgE/DapE family deacylase	NA	NA	NA	NA
WP_000791399.1\|2419497_2420553_+	succinyl-diaminopimelate desuccinylase	A0A2I6PER8	Staphylococcus_phage	6.0e-38	34.6
WP_000595616.1\|2420574_2421594_+	beta-channel forming cytolysin	A0A2I6PEU3	Staphylococcus_phage	2.6e-54	39.8
2421500:2421517	attL	NA	NA	NA	NA
WP_070992250.1\|2422731_2423769_-\|integrase	site-specific integrase	A0EWV2	Staphylococcus_phage	3.4e-179	99.7
WP_000825947.1\|2423827_2424292_-	hypothetical protein	A0EWV3	Staphylococcus_phage	1.1e-28	100.0
WP_000705243.1\|2424391_2424574_-	hypothetical protein	R9QT81	Staphylococcus_phage	5.3e-27	100.0
WP_000837517.1\|2424729_2425428_-	potassium channel family protein	A0A1B0Y2S3	Lactobacillus_phage	4.4e-13	29.8
WP_031763806.1\|2425609_2426242_-	helix-turn-helix domain-containing protein	Q4ZB06	Staphylococcus_virus	1.9e-103	90.4
WP_000192116.1\|2426395_2426623_+	helix-turn-helix transcriptional regulator	Q4ZB05	Staphylococcus_virus	3.5e-36	98.7
WP_103151996.1\|2426645_2427434_+	phage antirepressor KilAC domain-containing protein	R9QSV3	Staphylococcus_phage	1.8e-143	99.2
WP_001566738.1\|2427450_2427645_+	hypothetical protein	Q4ZDS1	Staphylococcus_virus	1.0e-23	100.0
WP_000768245.1\|2427639_2427996_-	DUF2513 domain-containing protein	A0A1P8L6H1	Staphylococcus_phage	6.1e-59	100.0
WP_000389905.1\|2428045_2428237_+	hypothetical protein	Q4ZDR9	Staphylococcus_virus	2.1e-26	100.0
WP_070992249.1\|2428238_2428466_-	hypothetical protein	A7TWL9	Staphylococcus_phage	1.9e-37	98.7
WP_001120935.1\|2428524_2428845_+	DUF771 domain-containing protein	Q4ZDR7	Staphylococcus_virus	1.5e-56	100.0
WP_000066014.1\|2428841_2429003_+	DUF1270 domain-containing protein	Q4ZAZ7	Staphylococcus_virus	9.5e-20	98.1
WP_031807559.1\|2429095_2429398_+	DUF2482 family protein	A1KWZ5	Staphylococcus_virus	1.2e-26	63.6
WP_031807558.1\|2429401_2429662_+	DUF1108 family protein	A0A0H3U2T6	Staphylococcus_phage	3.2e-41	95.3
WP_001205732.1\|2429670_2429934_+	hypothetical protein	A0A2I6PDG2	Staphylococcus_phage	7.7e-43	100.0
WP_031807551.1\|2429942_2431886_+	AAA family ATPase	S4V9K6	Staphylococcus_phage	0.0e+00	98.9
WP_000138473.1\|2431887_2432808_+	recombinase	A0A2I6PDH5	Staphylococcus_phage	7.3e-165	99.0
WP_072528355.1\|2432888_2433506_+	MBL fold metallo-hydrolase	A0A2I6PDI9	Staphylococcus_phage	2.7e-86	99.4
WP_047214707.1\|2433506_2433977_+	single-stranded DNA-binding protein	A0A1W6JPL9	Staphylococcus_phage	8.0e-83	100.0
WP_070992247.1\|2434006_2434891_+	DnaD domain protein	I1W658	Staphylococcus_phage	4.3e-138	99.0
WP_000338528.1\|2434897_2435116_+	hypothetical protein	A0A1P8L6E4	Staphylococcus_phage	1.4e-37	100.0
WP_000401971.1\|2435124_2435529_+	RusA family crossover junction endodeoxyribonuclease	O80087	Staphylococcus_phage	1.4e-72	99.3
WP_000101273.1\|2435541_2435910_+	hypothetical protein	I1W656	Staphylococcus_phage	1.2e-49	98.4
WP_070992245.1\|2435913_2436156_+	hypothetical protein	A0A1P8L6E3	Staphylococcus_phage	1.9e-40	98.8
WP_025176279.1\|2436164_2436515_+	hypothetical protein	A0A0F6N3K4	Staphylococcus_phage	2.2e-45	90.0
WP_031763781.1\|2436507_2436756_+	DUF1024 family protein	A0EWY0	Staphylococcus_phage	3.5e-37	97.6
WP_031763779.1\|2436748_2437285_+	dUTPase	M1SNY5	Staphylococcus_phage	1.5e-93	98.3
WP_001652276.1\|2437321_2437567_+	hypothetical protein	Q9B0F1	Staphylococcus_virus	2.9e-28	93.8
WP_001652277.1\|2437563_2437770_+	DUF1381 domain-containing protein	A0A2I6PDB6	Staphylococcus_phage	1.9e-25	86.8
WP_001652279.1\|2437766_2437970_+	hypothetical protein	B2ZYX5	Staphylococcus_phage	5.7e-30	95.5
WP_031761843.1\|2437962_2438112_+	transcriptional regulator	A0A1W6JPZ2	Staphylococcus_phage	1.1e-17	98.0
WP_001005262.1\|2438270_2438921_+	hypothetical protein	D2JLD8	Staphylococcus_phage	8.9e-117	100.0
WP_000265041.1\|2438920_2439121_+	DUF1514 family protein	R9QT57	Staphylococcus_phage	1.1e-28	100.0
WP_000590122.1\|2439148_2439565_+	hypothetical protein	G4KNP7	Staphylococcus_phage	1.3e-76	100.0
WP_031807580.1\|2439796_2440096_+	HNH endonuclease	G4KNP8	Staphylococcus_phage	7.9e-52	99.0
WP_000402904.1\|2440226_2440571_+	hypothetical protein	G4KNP9	Staphylococcus_phage	9.4e-57	100.0
WP_000625096.1\|2440567_2442229_+\|terminase	terminase large subunit	A0A075M4D3	Staphylococcus_phage	0.0e+00	100.0
WP_000025266.1\|2442244_2443432_+\|portal	phage portal protein	A0A2I6PDI1	Staphylococcus_phage	3.0e-219	99.7
WP_000642728.1\|2443415_2444153_+\|protease	Clp protease ClpP	G4KNQ2	Staphylococcus_phage	1.8e-129	100.0
WP_000154559.1\|2444176_2445322_+\|capsid	phage major capsid protein	G4KNQ3	Staphylococcus_phage	9.6e-215	100.0
WP_103151997.1\|2445341_2445602_+	hypothetical protein	A0A0H3U504	Staphylococcus_phage	3.2e-41	98.8
WP_000150936.1\|2445614_2445899_+\|head,tail	phage head-tail adapter protein	A0A2I6PDJ5	Staphylococcus_phage	2.3e-45	100.0
WP_000755150.1\|2445882_2446245_+\|head,tail	head-tail adaptor protein	G4KNQ4	Staphylococcus_phage	4.4e-65	100.0
2445983:2446000	attR	NA	NA	NA	NA
WP_000114341.1\|2446241_2446646_+	hypothetical protein	A0A1W6JPJ1	Staphylococcus_phage	2.5e-69	100.0
WP_000565498.1\|2446642_2447050_+	hypothetical protein	G4KNQ6	Staphylococcus_phage	7.1e-72	100.0
WP_000268739.1\|2447050_2447695_+\|tail	phage tail protein	A0A2I6PDI6	Staphylococcus_phage	1.1e-119	100.0
WP_071621395.1\|2447736_2447961_+	hypothetical protein	A0A075LYE8	Staphylococcus_phage	3.0e-32	100.0
WP_001096355.1\|2448010_2448361_+	hypothetical protein	G4KNQ8	Staphylococcus_phage	7.8e-59	100.0
WP_103151999.1\|2448605_2453135_+\|tail	phage tail tape measure protein	A0A2I6PDK2	Staphylococcus_phage	0.0e+00	99.7
WP_000567408.1\|2453131_2454616_+\|tail	phage tail protein	A0A2I6PDJ0	Staphylococcus_phage	1.2e-297	100.0
WP_000582165.1\|2454631_2458417_+	hypothetical protein	A0A1X9H0H3	Staphylococcus_phage	0.0e+00	98.5
WP_001153681.1\|2458406_2458559_+	hypothetical protein	D2JLG0	Staphylococcus_phage	5.2e-20	100.0
WP_001040261.1\|2458605_2458893_+	hypothetical protein	D2JLG1	Staphylococcus_phage	1.3e-43	100.0
WP_000539688.1\|2458950_2459247_+	DUF2951 domain-containing protein	D2JLG2	Staphylococcus_phage	2.9e-46	100.0
WP_011447039.1\|2459396_2459573_+\|holin	putative holin-like toxin	D2JLG3	Staphylococcus_phage	2.2e-22	98.3
WP_001791821.1\|2459625_2459733_-	hypothetical protein	NA	NA	NA	NA
WP_000611512.1\|2459784_2460039_+\|holin	phage holin	D2JLG4	Staphylococcus_phage	4.1e-41	100.0
WP_000861038.1\|2460050_2460806_+	CHAP domain-containing protein	D2JLG5	Staphylococcus_phage	3.4e-152	100.0
WP_000919350.1\|2460996_2461488_+	staphylokinase	A0A1X9H028	Staphylococcus_phage	9.5e-87	100.0
WP_020444758.1\|2462014_2462473_+	amidase	R9QTN8	Staphylococcus_phage	4.9e-85	98.7
WP_103152000.1\|2462567_2463017_-	chemotaxis-inhibiting protein CHIPS	A0A1P8L6A8	Staphylococcus_phage	2.5e-78	99.3
WP_000702263.1\|2463701_2464052_+	complement inhibitor SCIN-A	A0A1P8L6B0	Staphylococcus_phage	7.5e-54	100.0
WP_001791826.1\|2464104_2464365_-	hypothetical protein	M9NS66	Staphylococcus_phage	2.3e-23	100.0
WP_000669789.1\|2464675_2464855_-	hypothetical protein	A0A1W6JQ29	Staphylococcus_phage	2.2e-25	100.0
WP_070854401.1\|2465812_2467771_+	MAP domain-containing protein	NA	NA	NA	NA
WP_001068518.1\|2468041_2469328_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_000990056.1\|2469527_2469626_+	hypothetical protein	NA	NA	NA	NA
WP_000681966.1\|2469867_2470044_+	hypothetical protein	NA	NA	NA	NA
WP_000691584.1\|2470301_2470682_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_000991300.1\|2470678_2471575_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	A0A2H4PQG7	Staphylococcus_phage	1.1e-16	30.2
WP_000645721.1\|2471575_2472256_+	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA
WP_000763048.1\|2472252_2473125_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	A0A2H4PQG7	Staphylococcus_phage	6.1e-28	35.2
WP_054194530.1\|2473124_2473865_+	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA
WP_000182842.1\|2473930_2474494_-	thioredoxin family protein	NA	NA	NA	NA
WP_000966286.1\|2474614_2475139_+	membrane protein	NA	NA	NA	NA
WP_001033966.1\|2475198_2475756_+	DUF1700 domain-containing protein	NA	NA	NA	NA
WP_000713063.1\|2475752_2476595_+	DUF4097 family beta strand repeat protein	NA	NA	NA	NA
WP_001188080.1\|2476651_2477692_-	choloylglycine hydrolase	NA	NA	NA	NA
WP_000267034.1\|2478142_2478316_+	hypothetical protein	NA	NA	NA	NA
WP_000205103.1\|2478372_2478774_-	YolD-like family protein	U3PG23	Staphylococcus_phage	1.3e-22	42.9
WP_000181320.1\|2479043_2480072_+	lactonase family protein	NA	NA	NA	NA
WP_001021226.1\|2480191_2481571_-	aldehyde dehydrogenase	NA	NA	NA	NA
WP_001790680.1\|2481622_2481796_+	hypothetical protein	NA	NA	NA	NA
WP_001140871.1\|2481988_2482918_-	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA
WP_000149686.1\|2482970_2483531_-	cysteine hydrolase	G3MA16	Bacillus_virus	2.0e-32	41.2
WP_000275721.1\|2483902_2485000_+	pectate lyase	U5PWM6	Bacillus_phage	2.5e-47	34.6
WP_000323161.1\|2485204_2486767_+	SLC13 family permease	NA	NA	NA	NA
WP_031785526.1\|2486777_2486885_-	hypothetical protein	NA	NA	NA	NA
WP_001177820.1\|2486956_2487751_-	prephenate dehydratase	NA	NA	NA	NA
WP_000898869.1\|2487770_2488847_-	nitric oxide synthase oxygenase	NA	NA	NA	NA
WP_000284427.1\|2489030_2490500_+	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	3.2e-106	44.3
WP_110183634.1\|2490492_2491314_+	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	2.2e-67	52.3
WP_000011542.1\|2491584_2492187_+	DUF2179 domain-containing protein	NA	NA	NA	NA
WP_000669865.1\|2492167_2492341_+	NETI motif-containing protein	NA	NA	NA	NA
WP_000434537.1\|2492631_2492958_-	staphostatin A	NA	NA	NA	NA
WP_000827739.1\|2492988_2494155_-\|protease	cysteine protease staphopain A	NA	NA	NA	NA

DBSCAN-SWA_9

2599165 : 2645258

Staphylococcus_phage(91.43%)

tRNA,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_098686295.1\|2599165_2600294_+\|transposase	IS3 family transposase	A0A2I7SC85	Paenibacillus_phage	5.2e-80	54.3
WP_000627532.1\|2600496_2600838_-	DUF3969 family protein	A0A2H4PQN6	Staphylococcus_phage	4.8e-53	91.2
WP_000669031.1\|2600878_2601505_-	hypothetical protein	A0A2H4PQM7	Staphylococcus_phage	3.9e-85	84.1
WP_000070666.1\|2601580_2602576_-	DUF4352 domain-containing protein	A0A2H4PQN2	Staphylococcus_phage	1.9e-73	97.2
WP_001796416.1\|2602656_2603307_-	calcium-binding protein	A0A2H4PQM8	Staphylococcus_phage	1.3e-30	70.4
WP_072468941.1\|2603609_2604065_+	DUF4909 domain-containing protein	A0A2H4PQN7	Staphylococcus_phage	2.3e-79	98.6
WP_000348383.1\|2604223_2605702_+	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	1.0e-277	95.1
WP_000778530.1\|2605706_2606708_+	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	3.1e-185	97.6
WP_000718111.1\|2606704_2606962_-	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	1.0e-44	97.6
WP_000672013.1\|2607027_2607501_+	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	7.2e-84	98.7
WP_001827685.1\|2607505_2608252_+	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	6.6e-140	97.6
WP_000109912.1\|2608631_2610224_-	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	0.0e+00	99.8
WP_000933821.1\|2610595_2611789_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	4.3e-218	99.5
WP_000366165.1\|2611913_2612822_+	NERD domain-containing protein	A0A2H4PQQ8	Staphylococcus_phage	9.8e-138	99.7
WP_000453324.1\|2613033_2613867_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	3.5e-158	99.3
WP_000623468.1\|2614116_2614470_-	CrcB family protein	A0A2H4PQQ7	Staphylococcus_phage	2.7e-19	91.5
WP_001200545.1\|2614466_2614832_-	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	6.2e-59	99.2
WP_000091443.1\|2615087_2615390_-	hypothetical protein	NA	NA	NA	NA
WP_001096494.1\|2615648_2616362_+	transaldolase	M1PR54	Cyanophage	5.5e-19	35.3
WP_000492904.1\|2616861_2617482_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_001168913.1\|2617648_2618284_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_001030473.1\|2618580_2619024_+	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	1.1e-49	77.9
WP_001152694.1\|2619010_2619454_-	competence protein ComK	NA	NA	NA	NA
WP_000671060.1\|2619566_2620037_-	RNA polymerase sigma factor	A0A2H4PQT5	Staphylococcus_phage	3.8e-69	85.2
WP_000384171.1\|2620235_2620460_+	hypothetical protein	NA	NA	NA	NA
WP_001032834.1\|2620734_2621589_+	autolysin	Q4ZCC7	Staphylococcus_virus	9.8e-39	38.6
WP_000989113.1\|2621675_2622968_-	arsenite efflux transporter membrane subunit ArsB	A0A2H4PQU3	Staphylococcus_phage	3.0e-217	94.9
WP_000221174.1\|2622967_2623282_-	winged helix-turn-helix transcriptional regulator	A0A2H4PQT4	Staphylococcus_phage	1.8e-51	96.2
WP_001261660.1\|2623924_2625427_+	FAD-dependent oxidoreductase	A0A2H4PQX2	Staphylococcus_phage	2.3e-30	100.0
WP_029549219.1\|2625920_2626952_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	1.2e-195	98.8
WP_000493880.1\|2626958_2627591_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	2.1e-110	97.6
WP_001159030.1\|2627601_2628783_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	5.6e-226	99.5
WP_103151959.1\|2628795_2629260_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	2.2e-69	98.7
WP_001196347.1\|2629381_2630383_-	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	2.6e-184	99.4
WP_014937042.1\|2630494_2630614_+	hypothetical protein	NA	NA	NA	NA
WP_000266096.1\|2630616_2631444_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_000757543.1\|2632014_2632416_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_000764418.1\|2632532_2633096_-	methyltransferase domain-containing protein	A0A2H4PQV0	Staphylococcus_phage	4.1e-102	98.4
WP_000526542.1\|2633092_2634046_-	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	2.2e-79	100.0
WP_001025064.1\|2634155_2635337_+	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	9.6e-218	99.7
WP_001108717.1\|2635628_2638043_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	98.7
WP_000836464.1\|2638064_2638376_+	rhodanese-like domain-containing protein	A0A2H4PQR9	Staphylococcus_phage	6.9e-51	97.1
WP_001050528.1\|2638700_2645258_+	LPXTG-anchored repetitive surface protein SasC	A0A2H4PQU6	Staphylococcus_phage	2.3e-292	87.6

DBSCAN-SWA_10

2768542 : 2777586

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001005764.1\|2768542_2769547_+	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	1.7e-05	29.1
WP_001019180.1\|2769548_2770574_+\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_001112045.1\|2770596_2771736_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	5.4e-85	44.7
WP_001160682.1\|2771754_2772015_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	8.2e-05	35.3
WP_103151967.1\|2772289_2774569_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	4.1e-31	36.2
WP_000594987.1\|2774772_2777046_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	7.3e-65	29.5
WP_000364543.1\|2777067_2777586_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	2.1e-28	45.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP029650

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP029652

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection