CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP028118	Escherichia coli O111 str. RM9322 plasmid pRM9322-1, complete sequence	0 crisprs	NA	0	1
NZ_CP028117	Escherichia coli O111 str. RM9322 chromosome, complete genome	2 crisprs	DinG,PrimPol,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas14i	4	17
NZ_CP028119	Escherichia coli O111 str. RM9322 plasmid pRM9322-2, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

16379 : 58289

Escherichia_phage(30.0%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000937595.1\|16379_17567_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_000086162.1\|17673_18045_-	restriction endonuclease subunit M	A0A2I7RE86	Vibrio_phage	1.4e-10	33.9
WP_032271575.1\|18120_18426_-	hypothetical protein	NA	NA	NA	NA
WP_077629034.1\|18429_19332_-	DUF1281 domain-containing protein	NA	NA	NA	NA
WP_000921961.1\|19604_20564_+	plasmid stabilization protein	A0A222YXF2	Escherichia_phage	6.0e-61	40.6
WP_000445936.1\|20563_20959_+	plasmid stabilization protein	NA	NA	NA	NA
WP_001172748.1\|21918_22308_-	cytochrome b562 family protein	NA	NA	NA	NA
WP_085952195.1\|23333_24546_+\|transposase	IS3 family transposase	A0A0N7C035	Escherichia_phage	2.2e-169	100.0
WP_001369346.1\|24512_24722_+	hypothetical protein	A0A0N7BTS3	Escherichia_phage	7.8e-06	96.2
WP_001034091.1\|24866_28832_+	autotransporter outer membrane beta-barrel domain-containing protein	Q9LA58	Enterobacterial_phage	1.1e-230	39.9
WP_000997720.1\|29338_29593_+	hypothetical protein	NA	NA	NA	NA
WP_000091308.1\|29731_30097_+	hypothetical protein	NA	NA	NA	NA
WP_000937595.1\|30096_31284_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_000859016.1\|31487_31727_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_001344604.1\|31739_32000_-	hypothetical protein	NA	NA	NA	NA
WP_000130993.1\|32702_33560_-	incFII family plasmid replication initiator RepA	NA	NA	NA	NA
WP_001365571.1\|33552_33627_-	RepA leader peptide Tap	NA	NA	NA	NA
WP_000083826.1\|33861_34119_-	replication regulatory protein RepA	NA	NA	NA	NA
WP_000766809.1\|34358_34946_-	DUF2726 domain-containing protein	NA	NA	NA	NA
WP_001369435.1\|34983_35193_-	hemolysin expression modulator Hha	NA	NA	NA	NA
WP_001233838.1\|35238_35700_-	thermonuclease family protein	A0A0R6PHV6	Moraxella_phage	4.2e-20	37.1
WP_001369432.1\|35944_36157_-	ANR family transcriptional regulator	NA	NA	NA	NA
WP_001171554.1\|36899_37280_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	1.4e-66	100.0
WP_108988525.1\|37674_39213_+\|transposase	IS66-like element ISEc8 family transposase	A0A0P0ZBS5	Stx2-converting_phage	1.4e-298	99.4
WP_001213544.1\|40031_41471_-	enterohemolysin T1SS ABC transporter subunit EhxD	NA	NA	NA	NA
WP_000987096.1\|41474_43595_-	enterohemolysin T1SS ABC transporter permease/ATPase EhxB	W8CYL7	Bacillus_phage	1.6e-45	30.2
WP_000217744.1\|43644_46641_-	enterohemolysin EhxA	NA	NA	NA	NA
WP_000839950.1\|46642_47158_-	enterohemolysin-activating lysine-acyltransferase EhxC	NA	NA	NA	NA
WP_000091308.1\|48267_48633_+	hypothetical protein	NA	NA	NA	NA
WP_000937595.1\|48632_49820_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_001302199.1\|51632_52454_+	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_000975743.1\|52453_53560_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_000550555.1\|53653_55375_+	phosphoethanolamine transferase CptA	NA	NA	NA	NA
WP_001302181.1\|55448_56447_+	lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase	NA	NA	NA	NA
WP_000998093.1\|56750_58289_-\|transposase	IS66-like element ISEc8 family transposase	A0A0P0ZBS5	Stx2-converting_phage	3.8e-299	99.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP028117

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP028117_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028117_1

3274834-3275106

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT

4 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP028117_1

>merge|NZ_CP028117|1|3274834-3275106|PILER-CR,CRISPRCasFinder,CRT
CGGTTTATCCCCGCTGACGCGGGGAACACAAAACCAAACTTCTCCATAAATTCCATAGCCGCGGTTTATCCCCGCTGGCGCGGGGAACACGAGAGTGCTGACAGGTGTCTCGATTACCTGATCGGTTTATCCCCGCTGGCGCGGGGAACACGAACGCAATATCACGGCGTTCTGCGGCCTCGGCGGTTTATCCCCGCTGGCGCGGGGAACACGTCGGGCCGGGTAAGTGAACCTGTCGGTTTTCCGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP028117|1|1|3274834-3275106|PILER-CR
CGGTTTATCCCCGCTGACGCGGGGAACAC	AAAACCAAACTTCTCCATAAATTCCATAGCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGAGTGCTGACAGGTGTCTCGATTACCTGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAACGCAATATCACGGCGTTCTGCGGCCTCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCGGGCCGGGTAAGTGAACCTGTCGGTTTTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP028117|1|1|3274834-3275106|CRISPRCasFinder
CGGTTTATCCCCGCTGACGCGGGGAACAC	AAAACCAAACTTCTCCATAAATTCCATAGCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGAGTGCTGACAGGTGTCTCGATTACCTGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAACGCAATATCACGGCGTTCTGCGGCCTCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCGGGCCGGGTAAGTGAACCTGTCGGTTTTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP028117|1|1|3274834-3275106|CRT
CGGTTTATCCCCGCTGACGCGGGGAACAC	AAAACCAAACTTCTCCATAAATTCCATAGCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGAGTGCTGACAGGTGTCTCGATTACCTGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAACGCAATATCACGGCGTTCTGCGGCCTCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCGGGCCGGGTAAGTGAACCTGTCGGTTTTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028117.1\|WP_000568972.1\|3267388_3268438_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP028117.1\|WP_001173673.1\|3270520_3271126_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP028117.1\|WP_108988494.1\|3281692_3283765_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP028117.1\|WP_000372108.1\|3272554_3273463_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP028117.1\|WP_000029342.1\|3278868_3279408_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP028117.1\|WP_001219242.1\|3268434_3268914_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP028117.1\|WP_001295182.1\|3266646_3267408_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP028117.1\|WP_000063176.1\|3275202_3275496_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP028117.1\|WP_000246138.1\|3268913_3269624_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP028117.1\|WP_001246104.1\|3270147_3270471_-\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP028117.1\|WP_000517476.1\|3269642_3269954_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP028117.1\|WP_000144863.1\|3275495_3276416_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP028117.1\|WP_001084109.1\|3279404_3280967_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP028117.1\|WP_000281442.1\|3276412_3277063_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_CP028117.1\|WP_001090398.1\|3271125_3272553_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP028117.1\|WP_000956458.1\|3283958_3284111_-\|type-I-toxin-antitoxin-system-Hok-family-toxin	unknown	unknown	gnl\|CDD\|366840
NZ_CP028117.1\|WP_134884500.1\|3281064_3281724_-\|hypothetical-protein	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP028117.1\|WP_000085038.1\|3277044_3277791_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP028117.1\|WP_000206431.1\|3277801_3278857_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP028117.1\|WP_000490429.1\|3273714_3274752_+\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299

Protein	Function_ID	Function_description	E-value
NZ_CP028117.1\|WP_000568972.1\|3267388_3268438_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP028117.1\|WP_001173673.1\|3270520_3271126_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	7.34447e-148
NZ_CP028117.1\|WP_108988494.1\|3281692_3283765_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	1.01608e-142
NZ_CP028117.1\|WP_000372108.1\|3272554_3273463_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP028117.1\|WP_000029342.1\|3278868_3279408_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	7.30002e-26
NZ_CP028117.1\|WP_001219242.1\|3268434_3268914_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.56248e-104
NZ_CP028117.1\|WP_001295182.1\|3266646_3267408_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.92279e-150
NZ_CP028117.1\|WP_000063176.1\|3275202_3275496_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	2.35543e-65
NZ_CP028117.1\|WP_000246138.1\|3268913_3269624_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	3.26939e-121
NZ_CP028117.1\|WP_001246104.1\|3270147_3270471_-\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.22003e-52
NZ_CP028117.1\|WP_000517476.1\|3269642_3269954_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	5.55235e-62
NZ_CP028117.1\|WP_000144863.1\|3275495_3276416_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	4.23259e-157
NZ_CP028117.1\|WP_001084109.1\|3279404_3280967_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP028117.1\|WP_000281442.1\|3276412_3277063_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	7.04911e-92
NZ_CP028117.1\|WP_001090398.1\|3271125_3272553_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP028117.1\|WP_000956458.1\|3283958_3284111_-\|type-I-toxin-antitoxin-system-Hok-family-toxin	gnl\|CDD\|366840	pfam01848, HOK_GEF, Hok/gef family.	8.32243e-12
NZ_CP028117.1\|WP_134884500.1\|3281064_3281724_-\|hypothetical-protein	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	7.81758e-27
NZ_CP028117.1\|WP_000085038.1\|3277044_3277791_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	3.02728e-49
NZ_CP028117.1\|WP_000206431.1\|3277801_3278857_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	6.10696e-155
NZ_CP028117.1\|WP_000490429.1\|3273714_3274752_+\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0

>NZ_CP028117.1|WP_000490429.1|3273714_3274752_+|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKSWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEIFDKAGIAVLSVEATNWNLGNKDGYQQRAKTPAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
>NZ_CP028117.1|WP_000372108.1|3272554_3273463_-|sulfate-adenylyltransferase-subunit-CysD
MDQIRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>NZ_CP028117.1|WP_001090398.1|3271125_3272553_-|sulfate-adenylyltransferase-subunit-CysN
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTSGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEETFTRIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSESMPWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARVDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPVSQATAAPSEFSAFELELNALVRRHFPHWGARDLLGDK
>NZ_CP028117.1|WP_001173673.1|3270520_3271126_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>NZ_CP028117.1|WP_001246104.1|3270147_3270471_-|DUF3561-family-protein
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>NZ_CP028117.1|WP_000517476.1|3269642_3269954_-|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>NZ_CP028117.1|WP_000246138.1|3268913_3269624_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>NZ_CP028117.1|WP_001219242.1|3268434_3268914_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>NZ_CP028117.1|WP_000568972.1|3267388_3268438_-|tRNA-pseudouridine(13)-synthase-TruD
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEYILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLNDICVKGVPNYFGAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>NZ_CP028117.1|WP_001295182.1|3266646_3267408_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW
>NZ_CP028117.1|WP_000063176.1|3275202_3275496_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAIWLLEVRAGVYVGDTSKRIREMIWQQITQLAGCGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVDNQ
>NZ_CP028117.1|WP_000144863.1|3275495_3276416_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLSPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLAATVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALTEDLRLKVVRKMYELRFREPQPARRSVEQLRGIEGSRVRQTYALLAKQYGVKWNGRKYDPKDWEKGDVVNRCISAATSCLYGISEAAVLAAGYAPAIGFIHSGKPLSFVYDIADIIKFDSVVPKAFEIAARQPAEPDKEVRLACRDIFRSTKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPETLGDSGHRGRG
>NZ_CP028117.1|WP_000281442.1|3276412_3277063_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTGQLSPAQLLHLVDRGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQERPAESDTFTIECRSFAPELCTGQQLCFNLRANPTICKAGKRHDLLMEAKRQVRGQAEGSDVWLHQQQAALDWLAAQGERSGFTLLDTSVDAYRQQQLRRENSRQLIQFSSVDYTGMLTVTDPGLFVQRLSQGYGKSRAFGCGLMLIKPGAEA
>NZ_CP028117.1|WP_000085038.1|3277044_3277791_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLIFQLHGPMASWGGDAPGEVRHTHELPSRSALLGLLAAGVGIRRDDTERLNAFNRHYSLVVCASRNPRWARDYHTVQMPKEVRKARYFSRREELSDPELLSAIISRRDYYTDAWWMVAVATTADAPYSLEQLQDGLRHPVFPLYLGRKSHPLALPLAPLLLEGNACDALCNAYQQYQDHFHKLKVSLPKLQDECWWEGKHDGLVASKILRRRDVPLNRQQWLFGERTVNQGAWLSKEEPCTSQE
>NZ_CP028117.1|WP_000206431.1|3277801_3278857_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRVSSQSLKRAWRTSALFEQALAGHIGIRSGRIAREAATILIEKGIEDKKAIEWSAKIADYLGKAKNDKKPKDPLTNAETEQLVHISPAEFDAVKALAHQLAEEKRAPKEEDLALLRKDRMAVDIAMFGRMLANKPEFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASEDAGAGHLGETGFGSALFYTYICIDKDLLVENLGGDEALANQTIRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTRQLDVAVQRITTLRENMNTVYEQKTECASFDVMNKQGSMKDVLDFICA
>NZ_CP028117.1|WP_000029342.1|3278868_3279408_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVKEEHKATLRKWREELQAKRGNRASLRRSTTVNDVCLSEGFRSLLMQTHTLWKIEAQEWRFTALALVAAVSANVKAIDERQPFAAQLAAVMSKGRFTRLSAVKTPDELLRQLRRAVRLLNGSVNLDSLAEGVFRWCQESDDLLNHHRRQQRPTEFIRIRWALEYYQAGDADNEQNQ
>NZ_CP028117.1|WP_001084109.1|3279404_3280967_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNSFSLLTTPWLPVRFKDGTTGKLAPVDLADENVVDIAAPRADLQGTAWQFLLGLLQTSFAPKNHGRWDDIWQDGLEAEKLREALLSLEHAFQFGADSPSFMQDFEALKGDKVQVASLLPEIPGAQTTKFNKDHFIKRGVTEHVCPHCSALALFSLQLNAPSGGKGYRTGLRGGGPMTTLIELQEYQGNQQTPLWRKLWPNVMPQDEADLPLPKKFDDLVFPWLGPTRTSELAGAVVTHDQVNKLQAYWGMPRRIRIDFNTTTVGNCDICGEQSDALLSLMTTKNYGANYAMWQHPLTPYRIPLKEGGEFYSVKPQPGGLIWRDWLGLIETGKSENNTELPALVVKLFNASSLKQAKVGLWGFGYDFDNMKARCWYEHHFPLLLKKKEGQIPKLRLAAQTASRILSLLRSALKEAWFSDPKGARGDFSFVDIDFWNKTQHRFLRLVRQIEEGQDADELLGKWQKEIWLFARQDFDERVFTNPYEPVDLKRVMTARKKYFTTSAEKQSAKAAREKKQEAAE
>NZ_CP028117.1|WP_134884500.1|3281064_3281724_-|hypothetical-protein
MTERTSVPPPELLILAPVWDDSPGDEWFGSAMRNSAFVYPDHGRIWLTQRVLREQGAIQMPHAARLLIESVYGEDVVMPEGFARSEQEQVGKYYCDRAMAKKFVLNFRPGYAANINDYLPEKLSTRLAEESVSLWLATCIDGVVKPYATGAHAWEMSVVRVRRSWWKKHRDEFSLLEGEAFRLWCIEQRQDPEMANVILVNDDESCGYSATEGLIGKVG
>NZ_CP028117.1|WP_108988494.1|3281692_3283765_-|CRISPR-associated-helicase/endonuclease-Cas3
MRKYPLSLLKDKNIVTFFDFWGKNRRGEKDGGDDYHLLCWHSLDVAAMGYLMVKRNCFGLADYFRQLGISDKEQAAQFFAWLLCWHDIGKFARSFQQLYLPPELKIQEGARKNYEKISHSTLGYWLWNHYLSECQELLPSSSLSPRKLRRVIEMWMPVTTGHHGQPPDRMDELDNFLPEDKAAARDFLLEIKPLFPLIESPAFWDDDEGIELIKHLSWYISATVVLADWTGSSTRFFPRVAHPMDIKGYWQKTLIQAQNALTVFPLKAKVAPFNGINTLFPFIENPTPLQQKVLDLDISQQGPQLFILEDVTGAGKTEAALILAHRLIAAGKAQGLFFGLPTMATANAMYDRLVKTWLAFYSPESRPSLVLAHSARTLMDRFNESLWSGDLVGSEEPDEQTFSQGCAAWFADSNKKALLAEIGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAYMSCILEGLIERQARGGNSVILLSATLSQQQRDKLVAAFARGTEGQQEAPFLEKDDYPWLTHVTKSDVNSHRVATRKDVERSVSVGWLHSEQECIARIESAVSQGKCIAWIRNSVDDAIKVHRQLLARGVIPASSLSLFHSRFAFSDRQRIETETLARFGKYCSLQRASQVIVCTQVIEQSVDIDLDEMISDLAPVDLLIQRAGRLQRHIRDINGQLKRDGKDERSPP
>NZ_CP028117.1|WP_000956458.1|3283958_3284111_-|type-I-toxin-antitoxin-system-Hok-family-toxin
MLTKYALVAIIVLCCTVLGFTLMVGDSLCELSIRERGMEFKAVLAYESKK

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Crispr_ID: NZ_CP028117_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028117_2

3300809-3301203

Unclear

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAAC	PILER-CR

6 spacers

The CRISPR arrays of NZ_CP028117_2

>merge|NZ_CP028117|2|3300809-3301203|CRISPRCasFinder,CRT,PILER-CR
TGGTTTATCCCCGCTGGCGCGGGGAACTCGACAGAACGGCCTCAGTAGTCTCGTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAGCTCTACGTGAAGAATATTTGCAACACCCGCAAGAACGGTTTATCCCCGCTGGCGCGGGGAACACTCCAACCTTCCATGAGATACGCGCATTAGCGGCGGTTTATCCCCGCTGGCGCGGGGAACACCGTGACCGCCTGTACACGCTGTAATGGCTCACCGGTTTATCCCCGCTGGCGCGGGGAACACACACTATCCGGGCGGTATTACGCCCAAATATCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGCCGGGTGAAACCACTCGCGGCAGATCTTGCGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP028117|2|2|3300809-3301203|CRISPRCasFinder
TGGTTTATCCCCGCTGGCGCGGGGAACTC	GACAGAACGGCCTCAGTAGTCTCGTCAGGCTC
CGGTTTATCCCCGCTGGCGCGGGGAGCTC	TACGTGAAGAATATTTGCAACACCCGCAAGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCCAACCTTCCATGAGATACGCGCATTAGCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTGACCGCCTGTACACGCTGTAATGGCTCAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACACTATCCGGGCGGTATTACGCCCAAATATC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTGCCGGGTGAAACCACTCGCGGCAGATCTTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP028117|2|2|3300809-3301201|CRT
TGGTTTATCCCCGCTGGCGCGGGGAAC	TCGACAGAACGGCCTCAGTAGTCTCGTCAGGCTC
CGGTTTATCCCCGCTGGCGCGGGGAGC	TCTACGTGAAGAATATTTGCAACACCCGCAAGAA
CGGTTTATCCCCGCTGGCGCGGGGAAC	ACTCCAACCTTCCATGAGATACGCGCATTAGCGG
CGGTTTATCCCCGCTGGCGCGGGGAAC	ACCGTGACCGCCTGTACACGCTGTAATGGCTCAC
CGGTTTATCCCCGCTGGCGCGGGGAAC	ACACACTATCCGGGCGGTATTACGCCCAAATATC
CGGTTTATCCCCGCTGGCGCGGGGAAC	ACCTGCCGGGTGAAACCACTCGCGGCAGATCTTG
CGGTTTATCCCCGCTGGCGCGGGGAAC

>NZ_CP028117|2|2|3300810-3301201|PILER-CR
GGTTTATCCCCGCTGGCGCGGGGAACT	CGACAGAACGGCCTCAGTAGTCTCGTCAGGCTCC
GGTTTATCCCCGCTGGCGCGGGGAGCT	CTACGTGAAGAATATTTGCAACACCCGCAAGAAC
GGTTTATCCCCGCTGGCGCGGGGAACA	CTCCAACCTTCCATGAGATACGCGCATTAGCGGC
GGTTTATCCCCGCTGGCGCGGGGAACA	CCGTGACCGCCTGTACACGCTGTAATGGCTCACC
GGTTTATCCCCGCTGGCGCGGGGAACA	CACACTATCCGGGCGGTATTACGCCCAAATATCC
GGTTTATCCCCGCTGGCGCGGGGAACA	CCTGCCGGGTGAAACCACTCGCGGCAGATCTTGC
GGTTTATCCCCGCTGGCGCGGGGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028117.1\|WP_108988496.1\|3292572_3293352_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997
NZ_CP028117.1\|WP_000059312.1\|3294760_3296215_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NZ_CP028117.1\|WP_001098105.1\|3293329_3294667_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NZ_CP028117.1\|WP_001199970.1\|3301542_3302214_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP028117.1\|WP_000186445.1\|3311851_3314608_+\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
NZ_CP028117.1\|WP_000036723.1\|3303438_3304737_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP028117.1\|WP_000254745.1\|3307551_3307887_-\|endoribonuclease-MazF	unknown	unknown	gnl\|CDD\|182138
NZ_CP028117.1\|WP_001299098.1\|3289453_3290725_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182194
NZ_CP028117.1\|WP_001341834.1\|3291715_3292576_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936
NZ_CP028117.1\|WP_000039753.1\|3298691_3300170_+\|sugar-kinase	unknown	unknown	gnl\|CDD\|212662
NZ_CP028117.1\|WP_000210878.1\|3304824_3306462_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP028117.1\|WP_001130266.1\|3290992_3291568_+\|glycerol-3-phosphate-responsive-antiterminator	unknown	unknown	gnl\|CDD\|224865
NZ_CP028117.1\|WP_000226815.1\|3308212_3310447_-\|GTP-pyrophosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_CP028117.1\|WP_000021329.1\|3296284_3297070_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187605
NZ_CP028117.1\|WP_001268451.1\|3302506_3303379_+\|YgcG-family-protein	unknown	unknown	gnl\|CDD\|224429
NZ_CP028117.1\|WP_000581937.1\|3307886_3308135_-\|type-II-toxin-antitoxin-system-antitoxin-MazE	unknown	unknown	gnl\|CDD\|182082
NZ_CP028117.1\|WP_000109367.1\|3290715_3290976_+\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|225289
NZ_CP028117.1\|WP_001071648.1\|3306689_3307481_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP028117.1\|WP_001164569.1\|3297388_3298666_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
NZ_CP028117.1\|WP_001288224.1\|3302352_3302493_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP028117.1\|WP_108988496.1\|3292572_3293352_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	1.19233e-60
NZ_CP028117.1\|WP_000059312.1\|3294760_3296215_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	1.25325e-82
NZ_CP028117.1\|WP_001098105.1\|3293329_3294667_-\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.74708e-50
NZ_CP028117.1\|WP_001199970.1\|3301542_3302214_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.73859e-155
NZ_CP028117.1\|WP_000186445.1\|3311851_3314608_+\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
NZ_CP028117.1\|WP_000036723.1\|3303438_3304737_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP028117.1\|WP_000254745.1\|3307551_3307887_-\|endoribonuclease-MazF	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	2.42227e-74
NZ_CP028117.1\|WP_001299098.1\|3289453_3290725_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|182194	PRK10015, PRK10015, oxidoreductase; Provisional.	2.77152e-127
NZ_CP028117.1\|WP_001341834.1\|3291715_3292576_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	5.55254e-89
NZ_CP028117.1\|WP_000039753.1\|3298691_3300170_+\|sugar-kinase	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	1.84635e-108
NZ_CP028117.1\|WP_000210878.1\|3304824_3306462_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP028117.1\|WP_001130266.1\|3290992_3291568_+\|glycerol-3-phosphate-responsive-antiterminator	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	5.83077e-88
NZ_CP028117.1\|WP_000226815.1\|3308212_3310447_-\|GTP-pyrophosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_CP028117.1\|WP_000021329.1\|3296284_3297070_-\|SDR-family-oxidoreductase	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	2.61186e-139
NZ_CP028117.1\|WP_001071648.1\|3306689_3307481_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.97718e-160
NZ_CP028117.1\|WP_000581937.1\|3307886_3308135_-\|type-II-toxin-antitoxin-system-antitoxin-MazE	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	6.19513e-48
NZ_CP028117.1\|WP_000109367.1\|3290715_3290976_+\|ferredoxin-family-protein	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	8.55479e-42
NZ_CP028117.1\|WP_001164569.1\|3297388_3298666_+\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	3.54023e-29
NZ_CP028117.1\|WP_001268451.1\|3302506_3303379_+\|YgcG-family-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	1.01855e-100

>NZ_CP028117.1|WP_000039753.1|3298691_3300170_+|sugar-kinase
MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPYADTAEHPDDDLWASLCFAGHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKSWAWSEDAAVMDKFNIPRHMLFDVQMPGTVLGHITPQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKALPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDARAQDLSPEDLLNKKASSVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEMNHFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDKMVRVKDIFIPIESNAKRYDAMNKGIFKDLTKHTDVILKKSYEVMHGELGNVDSIQSWSNA
>NZ_CP028117.1|WP_001164569.1|3297388_3298666_+|MFS-transporter
MQHNSYRRWITLAIISFSGGVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQVAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSASLKTVIIIYSVVYILLGILCWFFVSDNNNLRSANNEEKQSFQLSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSVLGLLALTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEVRTPSYIMGTTVGICSVIGFLPDVFVYPIIGHWQDTLPAAEAYRNMWLMGMAALAMVIVFTFLLFQKIRTADSAPAMASSK
>NZ_CP028117.1|WP_000021329.1|3296284_3297070_-|SDR-family-oxidoreductase
MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDNGETKEMIEKQGVEVDFMQVDITAEGAPQKIIAACCERFGTVDILVNNAGICKLNKVLDFGRADWDSMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLASPASNYVNGHLLVVDGGYLVR
>NZ_CP028117.1|WP_000059312.1|3294760_3296215_-|FAD-binding-oxidoreductase
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREVMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKATGEGIAEIVARYPQCQRVDSKLIETWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNGIMNTGTIYPIEK
>NZ_CP028117.1|WP_001098105.1|3293329_3294667_-|MFS-transporter
MNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISENPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVVTATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLATVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV
>NZ_CP028117.1|WP_108988496.1|3292572_3293352_-|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MNILLAFKAEPDAGMLAEKEWQAAAQGKSGPDISLLRSLLGADEQAAAALLLAQRKNGTPMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFAPEFVARHIAEWQHQNPLDLIITCCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDALFITLEQRIEHGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAEMPAMQCLQLARAEQRRGATLIDGQTVAEKAQKLWQDYLRQRMQP
>NZ_CP028117.1|WP_001341834.1|3291715_3292576_-|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNIAIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQVLDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSVRKSHWGNALTATLQTEKRPLCLSLARQAGAVKNATLPSGMQQLNIVPGALPDWLVSTEDLKNVTRDPLAEARRVLVVGQGGEADNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAGVRNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEALVTNIHADCQ
>NZ_CP028117.1|WP_001130266.1|3290992_3291568_+|glycerol-3-phosphate-responsive-antiterminator
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISNIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>NZ_CP028117.1|WP_000109367.1|3290715_3290976_+|ferredoxin-family-protein
MSVAHNLWRVADAPHIVPADSVERQMVQRLINACPAGLFSLTPEGDLRVDYHGCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG
>NZ_CP028117.1|WP_001299098.1|3289453_3290725_+|FAD-dependent-oxidoreductase
MEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNLSGGRLYTHALAELLPQFHLTAPLERRITHESLSLLTPDGATTFSSLQPGGESWSVLRARFDPWLVAEAEEEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVLAERHGLVTRPAGEAMALGIKEVLSLEPSAIEERFHLENNEGAALLFSGRICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQSRVPASELLTRFKAHPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLVGDALRSCVNTGISVRGMDMALTGAQAAAQTLISACQHREPQNLFALYHHNVERSLLWDVLQRYQHVPALLQRPGWYRAWPALMQDISRDLWDQGDKPVPPLRQLFWRHLRRHGLWHLAGDVIRSLRCL
>NZ_CP028117.1|WP_001199970.1|3301542_3302214_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP028117.1|WP_001288224.1|3302352_3302493_+|hypothetical-protein
MSEENKENGFNHVKTFTKIIFIFSVLVFNDDESKITDAAVNLFIQI
>NZ_CP028117.1|WP_001268451.1|3302506_3303379_+|YgcG-family-protein
MRYFILMFTFVCSFVAAQPTIVPQLQQQVTDLTSSLNSQEKKELTHKLESIFNNTQVQIAVLIVPTTKDETIEQYATRVFDNWRLGDAKRNDGILIIVAWSDRTVRIQVGYGLEEKVTDALAGDIIRSNMIPAFKQQKFAQGLELAINALNNQLTSQHQYPTNPSESESASSSDHYYFAIFWVFAVMFFPFWFFHQGSNFCRACKSGVYISAIYLLDLFLFSDKIFSIAVFSFFFTFTIFMVFTCLCVLQKRASGKSYHSDNSGSGGGSSGGGFSGGGGSSGGGGASGRW
>NZ_CP028117.1|WP_000036723.1|3303438_3304737_-|phosphopyruvate-hydratase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP028117.1|WP_000210878.1|3304824_3306462_-|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>NZ_CP028117.1|WP_001071648.1|3306689_3307481_-|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>NZ_CP028117.1|WP_000254745.1|3307551_3307887_-|endoribonuclease-MazF
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPYTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG
>NZ_CP028117.1|WP_000581937.1|3307886_3308135_-|type-II-toxin-antitoxin-system-antitoxin-MazE
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW
>NZ_CP028117.1|WP_000226815.1|3308212_3310447_-|GTP-pyrophosphokinase
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS
>NZ_CP028117.1|WP_000186445.1|3311851_3314608_+|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSTEYGMSLQNRESIGQLISVLHRRHSDIVRAISVYDENNRLFVTSNFHLDPSSMQLGSNVPFPRQLTVTRDGDIMILRTPIISESYSPDESPSSDAKNSQNMLGYIALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREPLTMQHERLAKAVSMTDFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHHKQNTLLPVTDESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMPFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNLLLRYKPGSGISSRVVTPEVNEIVMNPNATLDWQLALRQAAGKTDLARDMLQMLLDFLPEVRNKVEEQLVGENPEGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGTKEEDLEPELLELLDEMDNVAREASKILG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP028117_1	1.1\|3274863\|32\|NZ_CP028117\|PILER-CR,CRISPRCasFinder,CRT	3274863-3274894	32	NZ_CP050442	Tolypothrix sp. PCC 7910 plasmid unnamed2, complete sequence	41503-41534	6	0.812
NZ_CP028117_2	2.1\|3300838\|32\|NZ_CP028117\|CRISPRCasFinder	3300838-3300869	32	MK814759	Gordonia phage Reyja, complete genome	4467-4498	8	0.75
NZ_CP028117_1	1.2\|3274924\|32\|NZ_CP028117\|PILER-CR,CRISPRCasFinder,CRT	3274924-3274955	32	LT599585	Pseudomonas veronii 1YdBTEX2 genome assembly, plasmid: PVE_plasmid	32377-32408	9	0.719
NZ_CP028117_1	1.3\|3274985\|32\|NZ_CP028117\|PILER-CR,CRISPRCasFinder,CRT	3274985-3275016	32	NC_010553	Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence	292180-292211	9	0.719
NZ_CP028117_1	1.3\|3274985\|32\|NZ_CP028117\|PILER-CR,CRISPRCasFinder,CRT	3274985-3275016	32	NZ_CP020740	[Pseudomonas] mesoacidophila strain ATCC 31433 plasmid pATCC31433, complete sequence	20747-20778	9	0.719

1. spacer 1.1|3274863|32|NZ_CP028117|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050442 (Tolypothrix sp. PCC 7910 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.812

aaaaccaaacttctccataaattccatagccg	CRISPR spacer
attactaaacttctgcataaattccataggag	Protospacer
*  **.******** **************  *

2. spacer 2.1|3300838|32|NZ_CP028117|CRISPRCasFinder matches to MK814759 (Gordonia phage Reyja, complete genome) position: , mismatch: 8, identity: 0.75

-gacagaacggcctcagtagtctcgtcaggctc	CRISPR spacer
ccaccg-ctggccccagtagcctcgtcaggctt	Protospacer
  ** *  .****.******.***********.

3. spacer 1.2|3274924|32|NZ_CP028117|PILER-CR,CRISPRCasFinder,CRT matches to LT599585 (Pseudomonas veronii 1YdBTEX2 genome assembly, plasmid: PVE_plasmid) position: , mismatch: 9, identity: 0.719

gagagtgctgacaggtgtctcgattacctgat	CRISPR spacer
ggctttgctggcaggtctctcgattaccttgg	Protospacer
*.   *****.***** ************ .

4. spacer 1.3|3274985|32|NZ_CP028117|PILER-CR,CRISPRCasFinder,CRT matches to NC_010553 (Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence) position: , mismatch: 9, identity: 0.719

gaacgcaatatcacggcgttctgcggcctcgg	CRISPR spacer
atcggcaatatcacggcgtttttcggcgccgc	Protospacer
.   ****************.* **** .**

5. spacer 1.3|3274985|32|NZ_CP028117|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020740 ([Pseudomonas] mesoacidophila strain ATCC 31433 plasmid pATCC31433, complete sequence) position: , mismatch: 9, identity: 0.719

gaacgcaatatcacggcgttctgcggcctcgg	CRISPR spacer
accggcaacatcacggcgttcttcggcgccgc	Protospacer
.   ****.************* **** .**

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

326317 : 337198

Enterobacteria_phage(22.22%)

integrase,transposase

attL 319909:319922|attR 335525:335538

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
319909:319922	attL	NA	NA	NA	NA
WP_000749863.1\|326317_327373_-	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	9.1e-119	61.1
WP_001285288.1\|327660_328764_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.1e-61	40.4
WP_000893251.1\|328775_330029_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	1.7e-95	47.0
WP_000772642.1\|330384_331599_+\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	7.5e-133	56.5
WP_000251023.1\|331741_332623_+	hypothetical protein	NA	NA	NA	NA
WP_000083330.1\|332820_333018_+	AlpA family transcriptional regulator	A0A1V0E8E5	Vibrio_phage	1.7e-07	48.1
WP_001035842.1\|333017_333449_+	hypothetical protein	A0A1W6JPH9	Morganella_phage	5.1e-28	49.0
WP_001019379.1\|333461_334295_+	hypothetical protein	G9L6G1	Escherichia_phage	5.3e-21	47.5
WP_085948178.1\|334413_335627_-\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	1.7e-169	99.7
335525:335538	attR	NA	NA	NA	NA
WP_000942525.1\|336127_337198_+	DNA cytosine methyltransferase	A0A1B1IRZ3	uncultured_Mediterranean_phage	2.6e-20	29.6

DBSCAN-SWA_2

550995 : 630887

Escherichia_phage(36.36%)

tRNA,transposase,protease,tail,head,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000186631.1\|550995_551475_-\|tRNA	Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK	NA	NA	NA	NA
WP_000365177.1\|551678_552473_-	hypothetical protein	NA	NA	NA	NA
WP_001342071.1\|552610_552952_+	HigA family addiction module antidote protein	A0A222YWD7	Escherichia_phage	2.1e-40	74.5
WP_000078269.1\|553065_555570_-	copper-exporting P-type ATPase CopA	A0A218MNH6	uncultured_virus	3.8e-115	38.4
WP_000883048.1\|555831_556764_+	glutaminase A	NA	NA	NA	NA
WP_000982172.1\|556766_558059_+	amino acid permease	NA	NA	NA	NA
WP_001026747.1\|558183_558591_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA
WP_000970323.1\|558591_559050_-	NfeD family protein	NA	NA	NA	NA
WP_000904502.1\|559046_559964_-	SPFH/Band 7/PHB domain protein	NA	NA	NA	NA
WP_001157532.1\|560109_560787_+	iron ABC transporter ATP-binding protein FetA	G3M9Y6	Bacillus_virus	3.1e-27	33.8
WP_001345010.1\|560773_561556_+	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA
WP_001295322.1\|561618_562473_-	chaperedoxin	NA	NA	NA	NA
WP_000148941.1\|562533_563343_-	NADP(+)-dependent aldehyde reductase	NA	NA	NA	NA
WP_001295836.1\|563332_563956_-\|protease	multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1	NA	NA	NA	NA
WP_001110573.1\|563926_564613_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.9e-33	35.6
WP_000561841.1\|564609_567024_+	ABC transporter permease	NA	NA	NA	NA
WP_001320180.1\|571645_571906_+	hypothetical protein	NA	NA	NA	NA
WP_001158001.1\|573137_574232_-\|tRNA	tRNA 2-selenouridine(34) synthase MnmH	NA	NA	NA	NA
WP_000460145.1\|574300_575227_-	HTH-type transcriptional activator AllS	NA	NA	NA	NA
WP_000776388.1\|575456_575939_+	ureidoglycolate lyase	NA	NA	NA	NA
WP_000141275.1\|576016_576832_+	HTH-type transcriptional repressor AllR	NA	NA	NA	NA
WP_001342079.1\|576921_578703_+	glyoxylate carboligase	E4WLQ6	Ostreococcus_tauri_virus	7.8e-38	27.0
WP_000943558.1\|578715_579492_+	hydroxypyruvate isomerase	NA	NA	NA	NA
WP_000765839.1\|579591_580470_+	2-hydroxy-3-oxopropionate reductase	NA	NA	NA	NA
WP_000401100.1\|580638_582093_+	putative allantoin permease	NA	NA	NA	NA
WP_000006887.1\|582152_583514_+	allantoinase AllB	NA	NA	NA	NA
WP_001298987.1\|583570_584872_+	uracil/xanthine transporter	NA	NA	NA	NA
WP_001315307.1\|584893_586039_+	glycerate 3-kinase	W6LM47	Streptococcus_phage	1.1e-48	41.9
WP_000540946.1\|586167_586953_-	(S)-ureidoglycine aminohydrolase	NA	NA	NA	NA
WP_001301144.1\|586963_588199_-	allantoate deiminase	NA	NA	NA	NA
WP_000703909.1\|588220_589270_-	ureidoglycolate dehydrogenase	NA	NA	NA	NA
WP_000580836.1\|589586_591254_+	acyl-CoA synthetase FdrA	NA	NA	NA	NA
WP_000495365.1\|591263_592523_+	DUF1116 domain-containing protein	NA	NA	NA	NA
WP_000152513.1\|592533_593349_+	DUF2877 domain-containing protein	NA	NA	NA	NA
WP_000855355.1\|593345_594239_+	carbamate kinase	NA	NA	NA	NA
WP_000815554.1\|594375_595443_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_001295318.1\|595439_595949_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	NA	NA	NA
WP_000212252.1\|596066_596789_-	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA
WP_000256002.1\|596791_597286_-	peptidylprolyl isomerase B	NA	NA	NA	NA
WP_000912342.1\|597459_598845_+\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.0e-45	34.8
WP_001143540.1\|598880_599402_-	metal-dependent hydrolase	NA	NA	NA	NA
WP_000190288.1\|599509_599722_-	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_000729154.1\|599723_600590_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.7e-30	37.5
WP_000776555.1\|601070_601613_+	type 1 fimbrial protein subunit FimA	NA	NA	NA	NA
WP_000988363.1\|601832_602525_+	type 1 fimbria chaperone FimC	NA	NA	NA	NA
WP_001345007.1\|602555_605165_+	fimbrial biogenesis usher protein	NA	NA	NA	NA
WP_001255226.1\|606216_606732_+	fimbria assembly protein	NA	NA	NA	NA
WP_000805428.1\|606734_607367_-	fimbria biosynthesis transcriptional regulator FimZ	NA	NA	NA	NA
WP_001345004.1\|608577_608910_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	5.0e-55	99.1
WP_000063245.1\|608965_609991_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	3.1e-188	97.4
WP_000158868.1\|610032_610428_+	DNA-packaging protein FI	A0A2R9YJP4	Escherichia_phage	5.7e-58	95.5
WP_000752958.1\|610439_610739_+\|head,tail	head-tail joining protein	A0A2R9YJJ5	Escherichia_phage	8.4e-46	98.9
WP_085947772.1\|610759_611972_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	8.3e-100	57.1
WP_000985132.1\|612065_612644_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	1.3e-79	99.0
WP_000683103.1\|612640_613036_+\|tail	tail protein	A0A0K2FIF4	Enterobacteria_phage	1.4e-69	98.5
WP_001342267.1\|613043_613784_+\|tail	phage tail protein	A0A0K2FJ05	Enterobacteria_phage	1.0e-129	98.0
WP_000479169.1\|613799_614222_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	3.1e-70	96.4
WP_000459457.1\|614203_614638_+\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	6.9e-65	100.0
WP_000840226.1\|614630_616811_+\|tail	phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	90.7
WP_085948178.1\|616816_618029_+\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	1.7e-169	99.7
WP_153244794.1\|617995_618142_+	hypothetical protein	A0A0N7BTS3	Escherichia_phage	5.4e-06	96.0
WP_000239881.1\|618099_618768_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000937502.1\|618824_619130_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	2.8e-12	76.5
WP_001226384.1\|619313_620798_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_001201824.1\|620984_621938_-\|protease	omptin family outer membrane protease OmpT	NA	NA	NA	NA
WP_001177454.1\|622450_623212_-	DNA-binding transcriptional regulator EnvY	NA	NA	NA	NA
WP_001224569.1\|623394_624285_-	DUF4434 family protein	NA	NA	NA	NA
WP_001345000.1\|624285_627258_-	bacteriophage adsorption protein NfrA	NA	NA	NA	NA
WP_000383942.1\|627244_629482_-	phage adsorption protein NrfB	NA	NA	NA	NA
WP_000420935.1\|629750_630887_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

850433 : 868387

Enterobacteria_phage(50.0%)

integrase,tail,transposase,holin

attL 850346:850360|attR 869714:869728

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
850346:850360	attL	NA	NA	NA	NA
WP_000263438.1\|850433_851510_-\|integrase	tyrosine-type recombinase/integrase	K7P6P6	Enterobacteria_phage	1.8e-199	99.4
WP_000638251.1\|851523_851934_-	lysozyme	A0A0N7KZA0	Stx2-converting_phage	1.1e-64	99.2
WP_085948178.1\|851917_853131_-\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	1.7e-169	99.7
WP_000075117.1\|853136_853334_-	hypothetical protein	A0A0N7KZA0	Stx2-converting_phage	1.2e-19	100.0
WP_000411800.1\|853333_853540_-\|holin	holin	A0A0P0ZC45	Stx2-converting_phage	5.3e-31	98.5
WP_000023272.1\|853987_855838_-	SASA family carbohydrate esterase	B6DZ89	Enterobacteria_phage	0.0e+00	95.9
WP_000499454.1\|856136_856295_-	DUF3927 family protein	NA	NA	NA	NA
WP_001302581.1\|856380_857124_-	hypothetical protein	NA	NA	NA	NA
WP_001097238.1\|857308_857998_-	Q antiterminator encoded by prophage CP-933P	I6PDF8	Cronobacter_phage	1.5e-58	48.1
WP_032178163.1\|858012_858135_-	YlcG family protein	NA	NA	NA	NA
WP_000750155.1\|858474_859434_+	lipid A deacylase LpxR family protein	NA	NA	NA	NA
WP_000994516.1\|859645_859834_-	protein ninH	A5VW84	Enterobacteria_phage	5.5e-27	100.0
WP_001008192.1\|859830_860193_-	RusA family crossover junction endodeoxyribonuclease	A5VW85	Enterobacteria_phage	3.5e-62	98.3
WP_000002251.1\|860189_860480_-	DUF1364 domain-containing protein	K7PK25	Enterobacteria_phage	7.1e-50	97.9
WP_001286917.1\|860472_860685_-	hypothetical protein	K7PK10	Enterobacteria_phage	1.6e-35	100.0
WP_000950962.1\|860677_860854_-	protein ninF	A0A220NRM2	Escherichia_phage	1.9e-26	100.0
WP_000386661.1\|860853_861213_-	DUF2591 family protein	G8EYI2	Enterobacteria_phage	2.7e-62	95.0
WP_074458876.1\|861215_861371_-	NinE family protein	I6RSQ2	Salmonella_phage	4.7e-24	98.0
WP_085948178.1\|861437_862650_+\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	1.7e-169	99.7
WP_001191368.1\|862692_862896_+\|tail	phage tail protein	A0A1I9LJT0	Stx_converting_phage	1.4e-28	97.0
WP_000950982.1\|863001_863883_+	hypothetical protein	A5LH48	Enterobacteria_phage	3.9e-147	90.4
WP_001369236.1\|864106_864937_+	type III secretion system effector Cif	A5LH49	Enterobacteria_phage	7.6e-153	97.8
WP_021351651.1\|865060_865432_-	hypothetical protein	K7PH54	Enterobacteria_phage	1.1e-58	95.1
WP_001002868.1\|866650_867031_+	hypothetical protein	NA	NA	NA	NA
WP_085948178.1\|867174_868387_+\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	1.7e-169	99.7
869714:869728	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1079041 : 1121604

Escherichia_phage(37.04%)

transposase,protease,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000156528.1\|1079041_1080802_-\|protease	Lon protease family protein	NA	NA	NA	NA
WP_000877161.1\|1080987_1081440_+	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_000750416.1\|1081515_1082556_-	porin OmpA	NA	NA	NA	NA
WP_000288710.1\|1082912_1083422_-	cell division inhibitor SulA	NA	NA	NA	NA
WP_001444487.1\|1083694_1084270_+	CRP-S regulon transcriptional coactivator Sxy	NA	NA	NA	NA
WP_000875023.1\|1084232_1086395_-	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_001261235.1\|1086404_1086851_-	YccF domain-containing protein	NA	NA	NA	NA
WP_001297106.1\|1086973_1089028_+	DNA helicase IV	A7KV33	Bacillus_phage	7.7e-21	27.9
WP_000424181.1\|1089059_1089518_-	methylglyoxal synthase	NA	NA	NA	NA
WP_000847791.1\|1089613_1090276_-	DUF2057 family protein	NA	NA	NA	NA
WP_000665217.1\|1090448_1090862_+	CoA-binding protein	NA	NA	NA	NA
WP_001295356.1\|1090906_1091224_-	heat shock protein HspQ	NA	NA	NA	NA
WP_000116302.1\|1091281_1092472_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA
WP_000048244.1\|1092566_1092845_+	acylphosphatase	NA	NA	NA	NA
WP_000904442.1\|1092841_1093171_-	sulfurtransferase TusE	NA	NA	NA	NA
WP_000375138.1\|1093261_1093921_-\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	5.2e-48	54.9
WP_000273151.1\|1095325_1095568_-	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_085948178.1\|1096730_1097944_-\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	1.7e-169	99.7
WP_000048507.1\|1097995_1099420_-	hypothetical protein	NA	NA	NA	NA
WP_001090200.1\|1099512_1099704_-	DUF1482 family protein	NA	NA	NA	NA
WP_000449192.1\|1099700_1099889_-	cell division inhibition protein DicB	NA	NA	NA	NA
WP_000394557.1\|1100420_1100795_-	hypothetical protein	NA	NA	NA	NA
WP_000379580.1\|1100806_1100959_-	DUF1391 family protein	M4QQ57	Salicola_phage	3.9e-07	53.2
WP_000103686.1\|1101231_1101948_-	helix-turn-helix domain-containing protein	H9C160	Pectobacterium_phage	3.8e-52	42.0
WP_000471549.1\|1101997_1102213_+	transcriptional regulator	NA	NA	NA	NA
WP_000693949.1\|1102209_1102635_+	Rha family transcriptional regulator	NA	NA	NA	NA
WP_001262389.1\|1102706_1103777_+	hypothetical protein	A0A088CD36	Shigella_phage	3.2e-63	65.2
WP_001151153.1\|1103817_1104240_+	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	1.1e-64	92.1
WP_001266135.1\|1104236_1104533_+	DUF4406 domain-containing protein	A0A0U2SAZ1	Escherichia_phage	7.5e-47	93.7
WP_001209481.1\|1104529_1104991_+	ead/Ea22-like family protein	Q8VNQ2	Enterobacteria_phage	3.4e-38	92.9
WP_000403777.1\|1104968_1105325_+	hypothetical protein	A0A2R2Z307	Escherichia_phage	3.0e-58	98.3
WP_000935420.1\|1105375_1105588_+	hypothetical protein	A0A2R2Z310	Escherichia_phage	5.8e-33	94.3
WP_042350895.1\|1105673_1105838_+	DUF4014 family protein	A0A1I9LJM2	Stx_converting_phage	2.0e-17	90.7
WP_000224233.1\|1105839_1106103_+	hypothetical protein	A0A2P0P958	Salmonella_phage	8.8e-31	72.4
WP_000207986.1\|1106113_1106983_+	DUF551 domain-containing protein	A0A1U9AJ59	Stx1_converting_phage	5.2e-120	76.8
WP_001278454.1\|1107098_1107203_+	hypothetical protein	NA	NA	NA	NA
WP_000902696.1\|1107391_1107604_+	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	1.2e-25	91.4
WP_032280206.1\|1107771_1108032_+	hypothetical protein	NA	NA	NA	NA
WP_001265133.1\|1108051_1109101_+	DUF968 domain-containing protein	U5P0K4	Shigella_phage	3.4e-110	54.9
WP_001217436.1\|1109113_1109485_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	1.3e-35	63.7
WP_000090265.1\|1109474_1109846_+	antitermination protein	Q777W5	Enterobacteria_phage	1.0e-53	84.0
WP_000265267.1\|1109997_1110816_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_000917737.1\|1111102_1111300_+	hypothetical protein	S5MQK8	Escherichia_phage	2.6e-27	96.9
WP_000261909.1\|1111437_1112151_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_000874357.1\|1112918_1114769_+	SASA family carbohydrate esterase	B6DZ89	Enterobacteria_phage	0.0e+00	95.9
WP_000411814.1\|1115216_1115423_+\|holin	holin	Q6H9V8	Enterobacteria_phage	5.3e-31	98.5
WP_000138558.1\|1115678_1115951_-	hypothetical protein	NA	NA	NA	NA
WP_001003118.1\|1116110_1116644_+	lysozyme	A0A1U9AJ98	Stx1_converting_phage	3.1e-99	94.4
WP_000675929.1\|1116864_1116978_+	hypothetical protein	A0A2L1IV24	Escherichia_phage	5.6e-11	97.3
WP_012816791.1\|1117199_1117385_+	membrane protein	A0A0P0ZCT3	Stx2-converting_phage	1.2e-18	100.0
WP_001303878.1\|1117911_1118226_+	PerC family transcriptional regulator	NA	NA	NA	NA
WP_001303940.1\|1118307_1118532_-	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	1.7e-19	90.6
WP_085948178.1\|1118581_1119795_-\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	1.7e-169	99.7
WP_012817858.1\|1119881_1120775_-	Tir-cytoskeleton coupling protein TccP2	NA	NA	NA	NA
WP_001443410.1\|1121220_1121604_-	hypothetical protein	Q6H9S1	Enterobacteria_phage	4.4e-55	84.3

DBSCAN-SWA_5

1177140 : 1244390

Escherichia_phage(23.53%)

integrase,protease,transposase

attL 1169377:1169391|attR 1200603:1200617

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1169377:1169391	attL	NA	NA	NA	NA
WP_000279869.1\|1177140_1178343_+\|integrase	tyrosine-type recombinase/integrase	A0A1B0VMI6	Pseudomonas_phage	3.8e-44	34.4
WP_000282209.1\|1178529_1180347_-	hypothetical protein	NA	NA	NA	NA
WP_001303889.1\|1181458_1181755_+	AlpA family transcriptional regulator	NA	NA	NA	NA
WP_000579535.1\|1181981_1182179_+	DUF3987 domain-containing protein	NA	NA	NA	NA
WP_000335710.1\|1182397_1183831_+	DUF3987 domain-containing protein	NA	NA	NA	NA
WP_000282084.1\|1184651_1185215_+	inovirus-type Gp2 protein	NA	NA	NA	NA
WP_000233452.1\|1185369_1187730_+	DEAD/DEAH box helicase family protein	Q84473	Paramecium_bursaria_Chlorella_virus	1.8e-34	32.5
WP_000998045.1\|1188486_1190025_-\|transposase	IS66-like element ISEc8 family transposase	A0A0P0ZBS5	Stx2-converting_phage	1.7e-299	99.8
WP_085948178.1\|1190236_1191449_+\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	1.7e-169	99.7
WP_000024297.1\|1192306_1192666_+	diacylglycerol kinase	NA	NA	NA	NA
WP_000591991.1\|1192758_1194378_-	phosphoethanolamine transferase	NA	NA	NA	NA
WP_000134927.1\|1194602_1194878_-	hypothetical protein	NA	NA	NA	NA
WP_042352357.1\|1195258_1195957_+	urease accessory protein UreD	NA	NA	NA	NA
WP_000424145.1\|1196047_1196350_+	urease subunit gamma	NA	NA	NA	NA
WP_000612150.1\|1196358_1196679_+	urease subunit beta	NA	NA	NA	NA
WP_000065682.1\|1196671_1198375_+	urease subunit alpha	NA	NA	NA	NA
WP_000966485.1\|1198384_1198849_+	urease accessory protein UreE	NA	NA	NA	NA
WP_001142973.1\|1198849_1199524_+	urease accessory protein UreF	NA	NA	NA	NA
WP_001021388.1\|1199535_1200153_+	urease accessory protein UreG	NA	NA	NA	NA
WP_000803992.1\|1201364_1201628_+	type B 50S ribosomal protein L31	NA	NA	NA	NA
1200603:1200617	attR	NA	NA	NA	NA
WP_001135715.1\|1201929_1202070_+	Hok/Gef family protein	G9L6L7	Escherichia_phage	2.4e-11	66.7
WP_000435663.1\|1205951_1206377_+	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	1.4e-33	73.2
WP_000624701.1\|1206373_1206724_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	1.1e-39	64.7
WP_000088522.1\|1206754_1208368_+\|transposase	IS66-like element IS682 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.1e-166	65.7
WP_000957251.1\|1209310_1209652_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_000042916.1\|1209638_1209968_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_001176766.1\|1210228_1210696_-	tellurium resistance protein TerW	NA	NA	NA	NA
WP_000506898.1\|1210713_1211922_-	DUF4236 domain-containing protein	NA	NA	NA	NA
WP_000797372.1\|1211932_1212889_-	HpcH/HpaI aldolase/citrate lyase family protein	NA	NA	NA	NA
WP_001182418.1\|1212888_1213968_-\|protease	cysteine protease StiP family protein	A0A172Q0S8	Acinetobacter_phage	6.2e-38	34.4
WP_001040060.1\|1213969_1214743_-	hypothetical protein	NA	NA	NA	NA
WP_001280118.1\|1214735_1215878_-	hypothetical protein	A0A172Q0Y1	Acinetobacter_phage	7.7e-31	35.4
WP_001035166.1\|1215887_1216946_-	hypothetical protein	NA	NA	NA	NA
WP_000254140.1\|1217267_1217849_+	tellurium resistance protein TerZ	K4JRX3	Caulobacter_phage	1.7e-13	30.5
WP_108988474.1\|1217848_1219006_+	tellurium resistance protein TerA	NA	NA	NA	NA
WP_000007449.1\|1219028_1219484_+	tellurite resistance TerB family protein	NA	NA	NA	NA
WP_000255079.1\|1219506_1220547_+	tellurium resistance membrane protein TerC	K7QKE8	Escherichia_phage	2.2e-77	48.0
WP_000116680.1\|1220595_1221174_+	tellurium resistance membrane protein TerD	A0A2P1N0L4	Streptomyces_phage	2.5e-06	40.0
WP_000301248.1\|1221242_1221818_+	TerD family protein	K4JRX3	Caulobacter_phage	2.5e-30	41.1
WP_001053349.1\|1222242_1222629_+	protein TerF	NA	NA	NA	NA
WP_001223350.1\|1223142_1225233_-	bifunctional siderophore receptor/adhesin Iha	A0A0P0I887	Acinetobacter_phage	2.6e-08	31.5
WP_000477623.1\|1226685_1226904_+	hypothetical protein	NA	NA	NA	NA
WP_001310149.1\|1227537_1227873_+	hypothetical protein	NA	NA	NA	NA
WP_001004881.1\|1228653_1228848_-	hypothetical protein	NA	NA	NA	NA
WP_001377350.1\|1228899_1229073_-	hypothetical protein	NA	NA	NA	NA
WP_001303898.1\|1229161_1229434_+	hypothetical protein	NA	NA	NA	NA
WP_001340489.1\|1229717_1229933_+	hypothetical protein	NA	NA	NA	NA
WP_000958487.1\|1229998_1230196_+	AlpA family transcriptional regulator	NA	NA	NA	NA
WP_001231525.1\|1230925_1232050_+	glycosyltransferase	NA	NA	NA	NA
WP_001301456.1\|1233403_1233862_-	hypothetical protein	NA	NA	NA	NA
WP_001167434.1\|1234319_1234829_+	hypothetical protein	NA	NA	NA	NA
WP_001260386.1\|1234917_1235541_+	hypothetical protein	NA	NA	NA	NA
WP_000124179.1\|1235636_1235870_+	hypothetical protein	NA	NA	NA	NA
WP_001287881.1\|1235922_1236114_-	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_001345400.1\|1236788_1237835_+	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
WP_001304205.1\|1238588_1240757_+	DUF2726 domain-containing protein	NA	NA	NA	NA
WP_000502842.1\|1242474_1243113_+	ParB N-terminal domain-containing protein	A0A0F7L444	uncultured_marine_virus	1.9e-55	52.5
WP_085948178.1\|1243176_1244390_-\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	1.7e-169	99.7

DBSCAN-SWA_6

1345181 : 1415590

Stx2-converting_phage(36.36%)

integrase,transposase,tRNA,terminase,tail,holin,head,capsid

attL 1340275:1340289|attR 1346756:1346770

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1340275:1340289	attL	NA	NA	NA	NA
WP_000074981.1\|1345181_1346300_-\|integrase	tyrosine-type recombinase/integrase	Q77Z04	Phage_21	2.9e-83	43.9
WP_000003742.1\|1346268_1346538_-	excisionase	NA	NA	NA	NA
WP_000048442.1\|1346599_1349065_-	exonuclease	A0A192Y6E0	Salmonella_phage	8.8e-56	57.1
1346756:1346770	attR	NA	NA	NA	NA
WP_001090200.1\|1349157_1349349_-	DUF1482 family protein	NA	NA	NA	NA
WP_000449192.1\|1349345_1349534_-	cell division inhibition protein DicB	NA	NA	NA	NA
WP_122993436.1\|1349873_1350014_+	hypothetical protein	NA	NA	NA	NA
WP_001171930.1\|1350017_1350236_-	hypothetical protein	NA	NA	NA	NA
WP_001447517.1\|1350276_1350666_-	hypothetical protein	NA	NA	NA	NA
WP_001303511.1\|1350961_1351240_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_001302048.1\|1351241_1351433_-	hypothetical protein	NA	NA	NA	NA
WP_001169687.1\|1351453_1351825_-	hypothetical protein	NA	NA	NA	NA
WP_001444689.1\|1351922_1352225_+	transcriptional regulator	K7PHA1	Enterobacteria_phage	1.5e-05	34.8
WP_000693943.1\|1352221_1352647_+	Rha family transcriptional regulator	NA	NA	NA	NA
WP_000095671.1\|1352669_1353632_+	DNA-binding protein	U5P0A0	Shigella_phage	2.1e-69	51.2
WP_023981635.1\|1353672_1354089_+	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	1.6e-63	90.6
WP_085948178.1\|1354128_1355342_-\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	1.7e-169	99.7
WP_001002672.1\|1355651_1355963_+	hypothetical protein	A0A0U2QV73	Escherichia_phage	1.1e-59	97.1
WP_001204666.1\|1356268_1356847_+	sce7726 family protein	A0A0U2RXY7	Escherichia_phage	2.6e-104	100.0
WP_000156210.1\|1356806_1357904_-	hypothetical protein	A0A0U2S621	Escherichia_phage	1.4e-210	99.5
WP_085948178.1\|1358538_1359752_-\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	1.7e-169	99.7
WP_072058819.1\|1359789_1359930_+	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	2.2e-12	95.0
WP_012817871.1\|1360097_1360370_+	hypothetical protein	I6PCV7	Cronobacter_phage	9.4e-12	49.2
WP_001369253.1\|1360371_1361427_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	2.4e-87	47.8
WP_000140024.1\|1361427_1361793_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	1.6e-38	64.3
WP_000640048.1\|1361801_1362332_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	9.3e-72	72.6
WP_000917750.1\|1362573_1362771_+	hypothetical protein	S5MQK8	Escherichia_phage	1.0e-28	98.5
WP_000935544.1\|1362921_1363980_+	site-specific DNA-methyltransferase	S5MDR0	Escherichia_phage	2.0e-198	94.0
WP_108988476.1\|1364776_1366531_+	SASA family carbohydrate esterase	H6WZJ9	Escherichia_phage	0.0e+00	98.1
WP_085948178.1\|1366570_1367784_-\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	1.7e-169	99.7
WP_000411802.1\|1368387_1368594_+\|holin	holin	A0A0P0ZC45	Stx2-converting_phage	2.4e-31	100.0
WP_000731236.1\|1368598_1368943_+	YdfR family protein	A0A0P0ZD64	Stx2-converting_phage	1.0e-58	100.0
WP_000992167.1\|1368993_1369527_+	lysozyme	A0A0N7KZF9	Stx2-converting_phage	7.4e-101	98.9
WP_001056806.1\|1369797_1370367_+	hypothetical protein	A0A1I9LJR6	Stx_converting_phage	3.1e-105	100.0
WP_000539792.1\|1370366_1370513_+	hypothetical protein	A0A0P0ZE99	Stx2-converting_phage	2.6e-16	100.0
WP_012816791.1\|1370740_1370926_+	membrane protein	A0A0P0ZCT3	Stx2-converting_phage	1.2e-18	100.0
WP_000095736.1\|1371350_1371578_-	DUF3950 domain-containing protein	A0A0P0ZE23	Stx2-converting_phage	1.7e-35	100.0
WP_000279788.1\|1371619_1371985_+	HNH endonuclease	B6ETE5	Enterobacteria_phage	2.0e-65	99.2
WP_000958415.1\|1372274_1372838_+\|terminase	terminase small subunit	A0A0P0ZDD1	Stx2-converting_phage	3.8e-79	100.0
WP_001369319.1\|1372834_1374496_+\|terminase	terminase large subunit	H6WZK9	Escherichia_phage	0.0e+00	98.9
WP_000172984.1\|1374559_1376497_+\|capsid	phage major capsid protein	B6ETE8	Enterobacteria_phage	0.0e+00	99.7
WP_001063099.1\|1376541_1376763_+	hypothetical protein	B6DZA0	Enterobacteria_phage	5.8e-36	100.0
WP_000125988.1\|1379451_1379778_+\|head,tail	phage gp6-like head-tail connector protein	B6ETF0	Enterobacteria_phage	7.0e-54	100.0
WP_001007905.1\|1379787_1380138_+\|head	phage head closure protein	A0A0P0ZB28	Stx2-converting_phage	1.6e-59	100.0
WP_000573391.1\|1380134_1380581_+	HK97 gp10 family phage protein	A0A0N7KZI9	Stx2-converting_phage	5.2e-76	100.0
WP_000133388.1\|1380577_1380922_+	DUF3168 domain-containing protein	A0A0P0ZC17	Stx2-converting_phage	1.4e-57	100.0
WP_001275472.1\|1380988_1381705_+\|tail	tail protein	A0A0P0ZD29	Stx2-converting_phage	5.6e-128	98.7
WP_001030042.1\|1381710_1382085_+\|tail	tail assembly protein	A0A0P0ZE84	Stx2-converting_phage	6.6e-64	98.4
WP_001453698.1\|1382180_1382390_+	DUF4035 domain-containing protein	A0A0P0ZDE6	Stx2-converting_phage	2.0e-33	100.0
WP_000212932.1\|1382441_1385684_+\|tail	phage tail tape measure protein	A0A0P0ZE78	Stx2-converting_phage	0.0e+00	98.5
WP_000807928.1\|1385676_1386018_+\|tail	phage tail protein	H6WZM2	Escherichia_phage	5.3e-60	95.6
WP_001447444.1\|1386017_1386716_+\|tail	phage minor tail protein L	A0A0P0ZBE3	Stx2-converting_phage	4.4e-130	97.4
WP_001302649.1\|1386732_1387053_-	Arc family DNA-binding protein	A0A0P0ZBD1	Stx2-converting_phage	3.0e-49	100.0
WP_001154345.1\|1387160_1387334_+	Arc family DNA-binding protein	A0A0P0ZC65	Stx2-converting_phage	3.4e-23	100.0
WP_000967279.1\|1388381_1389119_+\|tail	phage tail protein	A0A0P0ZDT1	Stx2-converting_phage	1.9e-147	98.8
WP_122996286.1\|1389064_1389697_+\|tail	tail assembly protein	Q6H9T3	Enterobacteria_phage	1.0e-104	97.6
WP_000514853.1\|1389933_1393413_+	host specificity protein J	A0A0P0ZDT4	Stx2-converting_phage	0.0e+00	97.4
WP_001230459.1\|1393479_1394079_+	Ail/Lom family outer membrane beta-barrel protein	Q687E7	Enterobacteria_phage	8.0e-112	100.0
WP_000268887.1\|1394143_1395466_+\|tail	tail fiber protein	Q687E6	Enterobacteria_phage	2.4e-76	99.1
WP_001023356.1\|1395467_1395737_+\|tail	phage tail protein	A0A2R2Z347	Escherichia_phage	2.4e-44	98.9
WP_115801847.1\|1395843_1395933_+	hypothetical protein	NA	NA	NA	NA
WP_001301673.1\|1395952_1398301_+	type III secretion system effector E3 ubiquitin ligase NleL	NA	NA	NA	NA
WP_001369471.1\|1398891_1402293_+	type III secretion system effector EspN	A0A0N7KZG3	Stx2-converting_phage	1.0e-219	39.2
WP_000145590.1\|1402461_1403040_+\|transposase	transposase	NA	NA	NA	NA
WP_001301834.1\|1403062_1403188_+	hypothetical protein	Q8HAB2	Salmonella_phage	8.7e-05	58.3
WP_001303921.1\|1403267_1403543_-	hypothetical protein	NA	NA	NA	NA
WP_000938117.1\|1403603_1404965_-	type III secretion system effector EspK	Q9MBM1	Phage_Gifsy-1	4.0e-50	28.9
WP_000799400.1\|1405328_1406192_-	spermidine/putrescine ABC transporter permease PotB	Q6GZ02	Mycoplasma_phage	6.7e-11	28.7
WP_000531601.1\|1406175_1407312_-	spermidine/putrescine ABC transporter ATP-binding protein PotA	Q6GZ03	Mycoplasma_phage	9.4e-29	39.8
WP_000359442.1\|1407561_1408791_+	peptidase T	NA	NA	NA	NA
WP_000456506.1\|1408936_1410058_-	cupin domain-containing protein	NA	NA	NA	NA
WP_000735412.1\|1410133_1411594_-	two-component system sensor histidine kinase PhoQ	NA	NA	NA	NA
WP_001265481.1\|1411593_1412265_-	two-component system response regulator PhoP	NA	NA	NA	NA
WP_000423729.1\|1412432_1413803_-	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	4.2e-108	44.9
WP_001297479.1\|1413806_1414448_-	high frequency lysogenization protein HflD	NA	NA	NA	NA
WP_001297484.1\|1414483_1415590_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA

DBSCAN-SWA_7

1516806 : 1589828

Enterobacteria_phage(42.31%)

transposase,portal,protease,terminase,holin,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000268365.1\|1516806_1517355_+	recombinase family protein	G8I4U3	Mycobacterium_phage	2.7e-21	36.1
WP_085948178.1\|1519201_1520414_+\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	1.7e-169	99.7
WP_000075578.1\|1520478_1521015_+	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	4.1e-59	71.9
WP_072127369.1\|1521047_1521329_+	DNA-binding protein	A0A222YXX1	Escherichia_phage	1.6e-30	75.8
WP_001444682.1\|1521325_1521622_+	DUF4406 domain-containing protein	A0A0U2SAZ1	Escherichia_phage	4.4e-47	93.7
WP_001209477.1\|1521618_1522080_+	ead/Ea22-like family protein	Q8VNQ2	Enterobacteria_phage	6.9e-39	95.2
WP_000403788.1\|1522057_1522414_+	hypothetical protein	A0A2R2Z307	Escherichia_phage	6.7e-58	97.5
WP_000137950.1\|1522509_1522881_+	hypothetical protein	A0A0N7KZJ2	Stx2-converting_phage	2.7e-49	78.9
WP_000610381.1\|1522877_1523231_+	DUF551 domain-containing protein	Q9EY98	Enterobacteria_phage	5.5e-36	65.0
WP_000220602.1\|1523436_1523736_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A2R2Z2Y1	Escherichia_phage	1.6e-49	96.0
WP_001260976.1\|1523741_1523999_-	type II toxin-antitoxin system ParD family antitoxin	A0A0N7C055	Escherichia_phage	6.6e-31	88.0
WP_001447497.1\|1524134_1524413_+	hypothetical protein	I6PCV7	Cronobacter_phage	6.9e-10	46.9
WP_001344904.1\|1524414_1525464_+	DUF968 domain-containing protein	U5P0K4	Shigella_phage	1.0e-109	54.3
WP_000904137.1\|1525476_1525851_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	2.4e-34	62.7
WP_000762902.1\|1525847_1526669_+	hypothetical protein	K7P7B9	Enterobacteria_phage	2.8e-83	61.9
WP_000917735.1\|1526895_1527093_+	hypothetical protein	S5MQK8	Escherichia_phage	1.8e-28	98.5
WP_000483498.1\|1527243_1528302_+	site-specific DNA-methyltransferase	S5MDR0	Escherichia_phage	1.7e-205	98.0
WP_000142980.1\|1528896_1530843_+	DUF1737 domain-containing protein	Q9EYC8	Enterobacteria_phage	0.0e+00	99.1
WP_000143458.1\|1530980_1531160_+	DUF1378 family protein	A0A2R2Z345	Escherichia_phage	2.2e-25	100.0
WP_001290214.1\|1531200_1531446_+	DUF826 domain-containing protein	A0A088CE63	Shigella_phage	3.2e-19	98.8
WP_001072901.1\|1531523_1531739_+\|holin	holin	A0A2R2Z340	Escherichia_phage	1.2e-33	100.0
WP_001344902.1\|1531742_1531988_+	hypothetical protein	NA	NA	NA	NA
WP_085948178.1\|1532013_1533226_+\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	1.7e-169	99.7
WP_000992150.1\|1533649_1534183_+	lysozyme	B6DZ92	Enterobacteria_phage	2.1e-100	97.2
WP_012578895.1\|1534701_1534887_+	membrane protein	A0A0P0ZCT3	Stx2-converting_phage	2.7e-18	98.4
WP_000373407.1\|1535362_1535839_+	DUF1441 family protein	Q8VNN8	Enterobacteria_phage	3.3e-84	100.0
WP_001077625.1\|1535835_1537959_+\|terminase	phage terminase large subunit family protein	Q9EYD1	Enterobacteria_phage	0.0e+00	100.0
WP_000102413.1\|1537955_1538168_+	hypothetical protein	Q687G1	Enterobacteria_phage	2.3e-29	98.6
WP_000974564.1\|1538167_1539670_+\|portal	phage portal protein	Q9EYD2	Enterobacteria_phage	4.8e-291	100.0
WP_001114424.1\|1539614_1541639_+\|protease	Clp protease ClpP	S5M7Q8	Escherichia_phage	0.0e+00	99.8
WP_001097065.1\|1541726_1542053_+	DUF2190 family protein	Q9EYD5	Enterobacteria_phage	6.1e-50	100.0
WP_001281350.1\|1542045_1542327_+	DNA breaking-rejoining protein	Q8VNN4	Enterobacteria_phage	3.9e-45	97.8
WP_000974966.1\|1542329_1542953_+	hypothetical protein	Q9EYD6	Enterobacteria_phage	6.6e-101	100.0
WP_000682716.1\|1542965_1543364_+\|tail	tail protein	Q9EYD7	Enterobacteria_phage	5.9e-71	100.0
WP_000235090.1\|1543371_1544124_+\|tail	phage tail protein	Q687F6	Enterobacteria_phage	5.8e-136	100.0
WP_000479043.1\|1544137_1544560_+\|tail	phage minor tail protein G	Q687F5	Enterobacteria_phage	5.1e-73	100.0
WP_000532073.1\|1544586_1544895_+\|tail	phage tail assembly protein T	Q687F4	Enterobacteria_phage	1.3e-54	100.0
WP_000918237.1\|1544938_1547584_+\|tail	phage tail tape measure protein	Q9EYE1	Enterobacteria_phage	0.0e+00	99.4
WP_000847298.1\|1547580_1547910_+\|tail	phage tail protein	Q687F2	Enterobacteria_phage	4.3e-59	100.0
WP_001344666.1\|1548617_1549361_+\|tail	phage tail protein	Q6H9T4	Enterobacteria_phage	1.5e-147	98.4
WP_122996286.1\|1549306_1549939_+\|tail	tail assembly protein	Q6H9T3	Enterobacteria_phage	1.0e-104	97.6
WP_106895295.1\|1550175_1553652_+	host specificity protein J	Q687E8	Enterobacteria_phage	0.0e+00	96.6
WP_001230455.1\|1553719_1554319_+	Ail/Lom family outer membrane beta-barrel protein	Q687E7	Enterobacteria_phage	8.8e-111	99.0
WP_000279057.1\|1554383_1555697_+\|tail	tail fiber protein	A0A0P0ZCC1	Stx2-converting_phage	3.7e-77	97.0
WP_001023476.1\|1555698_1555968_+\|tail	phage tail protein	A0A1U9AJC2	Stx1_converting_phage	2.7e-43	97.8
WP_000692020.1\|1557103_1557694_+	protein kinase	NA	NA	NA	NA
WP_001079509.1\|1558730_1559237_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_001056491.1\|1559282_1559783_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_000807651.1\|1559868_1560048_-	general stress protein	NA	NA	NA	NA
WP_000443067.1\|1560428_1561235_-	tryptophan synthase subunit alpha	NA	NA	NA	NA
WP_000209520.1\|1561234_1562428_-	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_001344826.1\|1562439_1563798_-	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	A0A0P0IR83	Acinetobacter_phage	8.6e-37	40.7
WP_000763511.1\|1563801_1565397_-	bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD	A0A0N7IRD9	Acinetobacter_phage	3.8e-52	38.5
WP_001194584.1\|1565396_1566959_-	anthranilate synthase component I	NA	NA	NA	NA
WP_001700591.1\|1567050_1567095_-	trp operon leader peptide	NA	NA	NA	NA
WP_001285661.1\|1567232_1568114_+	5'-3' exoribonuclease	NA	NA	NA	NA
WP_001295575.1\|1568110_1568731_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
WP_001291216.1\|1568831_1569704_+	23S rRNA pseudouridine(2605) synthase RluB	NA	NA	NA	NA
WP_001278906.1\|1569743_1570334_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
WP_000559281.1\|1570330_1571089_-	YciK family oxidoreductase	A0A0N9R355	Chrysochromulina_ericina_virus	4.4e-06	24.5
WP_000422045.1\|1571308_1572358_+\|protease	protease SohB	A0A2H4UUF9	Bodo_saltans_virus	1.3e-21	31.5
WP_001031530.1\|1572393_1572645_-	YciN family protein	NA	NA	NA	NA
WP_001297122.1\|1573024_1575622_+	type I DNA topoisomerase	A0A2K9L1Q2	Tupanvirus	1.7e-86	34.7
WP_000776253.1\|1575831_1576806_+	HTH-type transcriptional regulator CysB	NA	NA	NA	NA
WP_001295577.1\|1577136_1577265_+	YmiA family putative membrane protein	NA	NA	NA	NA
WP_001297116.1\|1577267_1577435_+	hypothetical protein	NA	NA	NA	NA
WP_001310756.1\|1577548_1577644_+	hypothetical protein	NA	NA	NA	NA
WP_000099519.1\|1577807_1580483_+	aconitate hydratase AcnA	NA	NA	NA	NA
WP_001176295.1\|1580546_1581137_-	GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	7.7e-43	48.9
WP_001256539.1\|1581306_1582071_+	phosphatidylglycerophosphatase B	NA	NA	NA	NA
WP_000876286.1\|1582219_1582528_+	lipopolysaccharide assembly protein LapA	NA	NA	NA	NA
WP_000891353.1\|1582534_1583704_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA
WP_000176278.1\|1583895_1584633_+	orotidine-5'-phosphate decarboxylase	NA	NA	NA	NA
WP_001295580.1\|1584632_1584959_+	stress response translation initiation inhibitor YciH	NA	NA	NA	NA
WP_000498253.1\|1585084_1585303_-	osmotically-inducible lipoprotein OsmB	NA	NA	NA	NA
WP_001088625.1\|1585571_1586321_-	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_001288368.1\|1586410_1586584_-	hypothetical protein	NA	NA	NA	NA
WP_153244795.1\|1588502_1588649_-	hypothetical protein	A0A0N7BTS3	Escherichia_phage	4.9e-07	80.0
WP_085948178.1\|1588614_1589828_-\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	1.7e-169	99.7

DBSCAN-SWA_8

1650212 : 1684013

Escherichia_phage(56.76%)

tRNA,integrase,transposase,holin

attL 1649846:1649861|attR 1681002:1681017

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1649846:1649861	attL	NA	NA	NA	NA
WP_000628065.1\|1650212_1651445_-	diguanylate cyclase DgcM	A0A127AWB9	Bacillus_phage	3.1e-17	39.5
WP_000387388.1\|1651699_1652683_+	zinc transporter ZntB	NA	NA	NA	NA
WP_000123745.1\|1653160_1654534_+	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	6.6e-53	33.1
WP_001157407.1\|1654662_1655598_-\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	5.9e-146	98.8
WP_000040839.1\|1655649_1656885_-\|integrase	site-specific integrase	A0A0U2JGI6	Escherichia_phage	3.8e-241	99.5
WP_000079604.1\|1656886_1657102_-	excisionase XisR	A0A0U2RY08	Escherichia_phage	1.8e-37	100.0
WP_001302840.1\|1657201_1657390_-	DUF1187 family protein	A0A0U2QL97	Escherichia_phage	5.5e-27	98.4
WP_001443846.1\|1657427_1657577_-	type I toxin-antitoxin system endodeoxyribonuclease toxin RalR	A0A0U2QQP4	Escherichia_phage	2.5e-22	95.9
WP_000166313.1\|1657632_1658442_-	recombination protein RecT	A0A1P8DTF2	Proteus_phage	4.0e-106	71.5
WP_000105140.1\|1658434_1661035_-	exodeoxyribonuclease VIII	A0A0U2I1R6	Escherichia_phage	6.1e-249	63.5
WP_001344816.1\|1661136_1661412_-	hypothetical protein	A0A0U2QW85	Escherichia_phage	4.0e-42	95.6
WP_001352098.1\|1661486_1661657_-	conserved protein, Rac prophage	A0A0U2SHB5	Escherichia_phage	3.6e-17	71.4
WP_000560223.1\|1661656_1661878_-	killing protein KilR	A0A0U2RTC4	Escherichia_phage	2.0e-36	98.6
WP_001312793.1\|1662319_1662808_+	superinfection exclusion protein B	NA	NA	NA	NA
WP_001169151.1\|1662804_1662960_-	YdaF family protein	M4QQ57	Salicola_phage	6.1e-08	55.3
WP_001326317.1\|1662970_1663150_-	hypothetical protein	NA	NA	NA	NA
WP_000233319.1\|1663392_1663812_-	helix-turn-helix domain-containing protein	A0A2I6PIE7	Escherichia_phage	5.5e-19	46.5
WP_001072342.1\|1663891_1664146_+	hypothetical protein	A0A2I6PIE5	Escherichia_phage	1.3e-18	61.6
WP_000693803.1\|1664142_1664565_+	hypothetical protein	A0A0U2RXZ9	Escherichia_phage	1.3e-68	92.9
WP_001304174.1\|1664642_1665431_+	hypothetical protein	G9L6A8	Escherichia_phage	2.0e-41	64.3
WP_000788980.1\|1665437_1666184_+	ATP-binding protein	V5UQI5	Shigella_phage	5.6e-115	81.3
WP_000450712.1\|1666206_1666968_+	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	7.0e-121	90.5
WP_001141110.1\|1666983_1667406_+	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	3.1e-62	88.5
WP_000935420.1\|1667511_1667724_+	hypothetical protein	A0A2R2Z310	Escherichia_phage	5.8e-33	94.3
WP_042350895.1\|1667809_1667974_+	DUF4014 family protein	A0A1I9LJM2	Stx_converting_phage	2.0e-17	90.7
WP_000224233.1\|1667975_1668239_+	hypothetical protein	A0A2P0P958	Salmonella_phage	8.8e-31	72.4
WP_000208018.1\|1668249_1668411_+	hypothetical protein	A0A192Y6F5	Salmonella_phage	3.2e-15	89.4
WP_000365100.1\|1668489_1668735_+	hypothetical protein	Q9G078	Enterobacteria_phage	5.9e-13	70.7
WP_001100703.1\|1669166_1670318_+	DNA cytosine methyltransferase	Q8JKX6	Natrialba_phage	1.0e-22	36.9
WP_000016656.1\|1670285_1671275_-	hypothetical protein	NA	NA	NA	NA
WP_000138556.1\|1671274_1672666_-	ATPase	NA	NA	NA	NA
WP_000940319.1\|1673165_1673765_+	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	1.1e-105	92.0
WP_000247761.1\|1673764_1674055_+	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	3.3e-47	87.5
WP_000640158.1\|1674051_1674606_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	5.0e-68	69.1
WP_000466957.1\|1675167_1675599_+	tellurite resistance TerB family protein	H6WZJ6	Escherichia_phage	3.3e-67	97.2
WP_106914131.1\|1676169_1678023_+	SASA family carbohydrate esterase	B6DZ89	Enterobacteria_phage	0.0e+00	96.4
WP_000284522.1\|1678172_1678388_+\|holin	holin	Q6H9V8	Enterobacteria_phage	1.3e-32	97.2
WP_000731221.1\|1678392_1678737_+	YdfR family protein	A0A0P0ZD64	Stx2-converting_phage	1.8e-55	95.6
WP_000992086.1\|1678787_1679321_+	lysozyme	B6DZ92	Enterobacteria_phage	1.3e-100	97.7
WP_001344811.1\|1679594_1680134_+	ant domain protein	Q5MBW0	Stx1-converting_phage	3.0e-86	99.4
WP_085948178.1\|1680136_1681350_-\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	1.7e-169	99.7
1681002:1681017	attR	NA	NA	NA	NA
WP_001303943.1\|1682376_1682655_-	hypothetical protein	NA	NA	NA	NA
WP_001414184.1\|1683082_1683229_+	hypothetical protein	NA	NA	NA	NA
WP_001303944.1\|1683365_1684013_-	T3SS effector E3 ubiquitin-protein ligase NleG	B6ETE1	Enterobacteria_phage	1.6e-41	41.1

DBSCAN-SWA_9

1692772 : 1717148

Escherichia_phage(45.0%)

transposase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000048484.1\|1692772_1695244_-	exonuclease	A0A192Y6E0	Salmonella_phage	5.5e-58	57.7
WP_000199480.1\|1695339_1695528_-	DUF1482 family protein	NA	NA	NA	NA
WP_000449172.1\|1695524_1695713_-	cell division inhibitor	NA	NA	NA	NA
WP_001342117.1\|1696112_1696280_+	hypothetical protein	NA	NA	NA	NA
WP_000920491.1\|1696273_1696507_+	hypothetical protein	NA	NA	NA	NA
WP_000394552.1\|1696484_1696892_-	hypothetical protein	A0A2R2Z306	Escherichia_phage	7.0e-11	37.8
WP_001171894.1\|1696914_1697133_-	hypothetical protein	NA	NA	NA	NA
WP_001240336.1\|1697205_1697505_-	hypothetical protein	NA	NA	NA	NA
WP_000787428.1\|1697769_1698177_-	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	9.8e-29	49.6
WP_000705622.1\|1698463_1699015_+	hypothetical protein	NA	NA	NA	NA
WP_000020556.1\|1698986_1700027_+	DNA-binding protein	A0A0U2RT81	Escherichia_phage	7.9e-91	87.2
WP_157825328.1\|1699938_1700481_+	replication protein	A0A0U2JGJ0	Escherichia_phage	1.5e-85	98.7
WP_000450683.1\|1700514_1701249_+	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	2.9e-108	84.3
WP_001505071.1\|1701245_1701410_+	hypothetical protein	NA	NA	NA	NA
WP_001449026.1\|1702108_1702867_+	AcfC family adhesin Paa	NA	NA	NA	NA
WP_000961821.1\|1703145_1703358_+	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	1.3e-16	72.9
WP_001217394.1\|1703578_1703836_+	hypothetical protein	NA	NA	NA	NA
WP_032178572.1\|1703905_1704184_+	hypothetical protein	I6PCV7	Cronobacter_phage	2.8e-11	48.4
WP_001265289.1\|1704185_1705241_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	2.9e-88	47.6
WP_000140002.1\|1705241_1705607_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	1.6e-38	67.5
WP_001059384.1\|1705603_1706293_+	antiterminator	I6PDF8	Cronobacter_phage	4.0e-59	51.1
WP_000023139.1\|1707822_1709592_+	SASA family carbohydrate esterase	H6WZJ9	Escherichia_phage	0.0e+00	96.8
WP_085948178.1\|1709643_1710856_+\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	1.7e-169	99.7
WP_064764776.1\|1710822_1710945_+	hypothetical protein	A0A0N7BTS3	Escherichia_phage	4.3e-09	86.1
WP_001023452.1\|1710946_1711216_+\|tail	phage tail protein	Q687E5	Enterobacteria_phage	6.4e-45	100.0
WP_000491542.1\|1711356_1712232_+	hypothetical protein	A0A0P0ZCT1	Stx2-converting_phage	1.5e-162	100.0
WP_001121225.1\|1712456_1713107_-	DUF1076 domain-containing protein	B6ETE1	Enterobacteria_phage	1.2e-121	99.1
WP_096245710.1\|1713702_1714017_-	DinI-like family protein	Q687E4	Enterobacteria_phage	1.3e-25	81.9
WP_000347482.1\|1714076_1715360_+	MHS family MFS transporter	NA	NA	NA	NA
WP_000527750.1\|1715448_1716909_+	mannitol dehydrogenase family protein	G8DCZ3	Micromonas_pusilla_virus	5.6e-42	30.3
WP_000214712.1\|1716944_1717148_-	putative selenium delivery protein YdfZ	J9Q802	Salmonella_phage	1.6e-11	55.2

DBSCAN-SWA_10

1856369 : 1978828

116

Stx2-converting_phage(32.08%)

transposase,integrase,protease,terminase,head,holin,tail,capsid

attL 1936401:1936417|attR 1974058:1974074

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000826406.1\|1856369_1857578_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A077SL42	Escherichia_phage	9.2e-208	93.3
WP_001261013.1\|1858104_1858773_-	DUF3313 domain-containing protein	NA	NA	NA	NA
WP_000586732.1\|1859075_1859669_-	tellurite resistance methyltransferase TehB	NA	NA	NA	NA
WP_001341359.1\|1859665_1860658_-	dicarboxylate transporter/tellurite-resistance protein TehA	NA	NA	NA	NA
WP_001315480.1\|1860849_1861761_+	LbetaH domain-containing protein	NA	NA	NA	NA
WP_000140877.1\|1861755_1862292_-	50S ribosomal protein L7/L12-serine acetyltransferase	NA	NA	NA	NA
WP_001296778.1\|1862354_1862579_-	YdcH family protein	NA	NA	NA	NA
WP_000375956.1\|1862718_1864374_-	glucan biosynthesis protein	NA	NA	NA	NA
WP_000013783.1\|1864598_1865942_-	VOC family protein	NA	NA	NA	NA
WP_001345051.1\|1866158_1867082_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_001098530.1\|1867119_1868760_-	methyl-accepting chemotaxis protein Trg	NA	NA	NA	NA
WP_001320773.1\|1869158_1869308_+	type I toxin-antitoxin system toxin HokB	NA	NA	NA	NA
WP_000731833.1\|1869379_1869553_-	periplasmic protein	A0A0R6PKG1	Moraxella_phage	4.4e-07	67.4
WP_001307188.1\|1869797_1870328_-	cytochrome b561	A0A0U2QLA7	Escherichia_phage	3.1e-19	44.9
WP_000048667.1\|1870516_1871518_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_001027942.1\|1873058_1873859_-	YdcF family protein	NA	NA	NA	NA
WP_000139621.1\|1874130_1878033_-	ATP-dependent RNA helicase HrpA	A0A1V0SIV3	Klosneuvirus	2.2e-53	29.5
WP_000048948.1\|1878233_1878839_+	FMN-dependent NADH-azoreductase	NA	NA	NA	NA
WP_000627379.1\|1878889_1880206_-	phosphatase PAP2/dual specificity phosphatase family protein	NA	NA	NA	NA
WP_000431813.1\|1880195_1881953_-	bifunctional alpha/beta hydrolase/class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000890909.1\|1881968_1882865_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_000177525.1\|1882864_1883470_-	CDP-alcohol phosphatidyltransferase family protein	NA	NA	NA	NA
WP_000477179.1\|1883640_1885947_-	DUF2773 domain-containing bactofilin	NA	NA	NA	NA
WP_000097801.1\|1886010_1886871_-	pyridoxine 4-dehydrogenase	NA	NA	NA	NA
WP_001123455.1\|1887101_1887692_-	phenylacetic acid degradation protein PaaY	NA	NA	NA	NA
WP_000041176.1\|1887673_1888624_-	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA
WP_000632286.1\|1888724_1890038_-	phenylacetate--CoA ligase	NA	NA	NA	NA
WP_001206190.1\|1890064_1891270_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA
WP_000018413.1\|1891269_1891692_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA
WP_000973362.1\|1891681_1893109_-	3-hydroxyacyl-CoA dehydrogenase PaaC	NA	NA	NA	NA
WP_000969777.1\|1893110_1893899_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA
WP_001292353.1\|1893898_1894666_-	2,3-dehydroadipyl-CoA hydratase	NA	NA	NA	NA
WP_000206377.1\|1894662_1895733_-	phenylacetate-CoA oxygenase/reductase subunit PaaK	NA	NA	NA	NA
WP_001189197.1\|1895740_1896238_-	phenylacetate degradation protein PaaD	NA	NA	NA	NA
WP_001072831.1\|1896252_1896999_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA
WP_000073393.1\|1897007_1897295_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA
WP_000191073.1\|1897306_1898236_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA
WP_001186481.1\|1898520_1900566_+	phenylacetic acid degradation bifunctional protein PaaZ	NA	NA	NA	NA
WP_000535449.1\|1900813_1903087_+	primary-amine oxidase	NA	NA	NA	NA
WP_001067510.1\|1904866_1905772_+	transcriptional regulator FeaR	NA	NA	NA	NA
WP_001341369.1\|1905943_1906270_-	YdbL family protein	NA	NA	NA	NA
WP_000698141.1\|1906277_1906463_-	YnbE family lipoprotein	NA	NA	NA	NA
WP_000900925.1\|1906459_1909099_-	YdbH family protein	NA	NA	NA	NA
WP_000762229.1\|1909306_1910296_+	D-lactate dehydrogenase	M1I4S0	Paramecium_bursaria_Chlorella_virus	2.5e-70	44.0
WP_001295716.1\|1910406_1910829_+	heat shock protein HslJ	NA	NA	NA	NA
WP_001295715.1\|1910825_1911092_-	DUF333 domain-containing protein	NA	NA	NA	NA
WP_000628171.1\|1911365_1914890_+	pyruvate:ferredoxin (flavodoxin) oxidoreductase	NA	NA	NA	NA
WP_000837930.1\|1915256_1916390_+	porin OmpN	Q1MVN1	Enterobacteria_phage	1.2e-116	58.3
WP_001295593.1\|1916530_1916965_+	universal stress protein UspF	A0A1W6JNV4	Morganella_phage	1.4e-28	52.8
WP_001143784.1\|1917545_1918187_-	DUF1076 domain-containing protein	B6DZC0	Enterobacteria_phage	6.8e-109	100.0
WP_001443810.1\|1918268_1918898_-	DUF1076 domain-containing protein	B6DZB9	Enterobacteria_phage	1.3e-77	92.2
WP_001131659.1\|1918970_1919546_-	DUF1076 domain-containing protein	H6WZN1	Escherichia_phage	5.3e-89	88.4
WP_001023992.1\|1919658_1919928_-\|tail	phage tail protein	A0A0P0ZCV7	Stx2-converting_phage	4.2e-44	95.5
WP_000268965.1\|1919929_1921243_-\|tail	tail fiber protein	A0A0P0ZCC1	Stx2-converting_phage	7.9e-80	97.9
WP_001230550.1\|1921307_1921907_-	Ail/Lom family outer membrane beta-barrel protein	B6ETG5	Enterobacteria_phage	3.0e-111	100.0
WP_000515042.1\|1921977_1925475_-	host specificity protein J	A0A0P0ZEQ8	Stx2-converting_phage	0.0e+00	94.3
WP_000649829.1\|1925608_1926136_+	superoxide dismutase family protein	Q9MC02	Salmonella_phage	1.8e-59	60.5
WP_064732755.1\|1926326_1926959_-\|tail	tail assembly protein	Q6H9T3	Enterobacteria_phage	3.4e-97	90.4
WP_000194763.1\|1926904_1927648_-\|tail	phage tail protein	A0A0P0ZE89	Stx2-converting_phage	5.4e-150	99.2
WP_001152159.1\|1927658_1928357_-\|tail	phage minor tail protein L	H6WZM3	Escherichia_phage	1.3e-129	97.4
WP_000807964.1\|1928356_1928698_-\|tail	phage tail protein	A0A0P0ZCS8	Stx2-converting_phage	8.7e-63	100.0
WP_000212770.1\|1928690_1931933_-\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	0.0e+00	99.0
WP_001453698.1\|1931984_1932194_-	DUF4035 domain-containing protein	A0A0P0ZDE6	Stx2-converting_phage	2.0e-33	100.0
WP_001030060.1\|1932289_1932664_-\|tail	tail assembly protein	A0A0N7KZA2	Stx2-converting_phage	3.0e-64	99.2
WP_001275480.1\|1932669_1933386_-\|tail	tail protein	A0A0P0ZD29	Stx2-converting_phage	1.4e-126	97.9
WP_000133393.1\|1933454_1933799_-	DUF3168 domain-containing protein	A0A0P0ZC17	Stx2-converting_phage	9.4e-57	99.1
WP_000573391.1\|1933795_1934242_-	HK97 gp10 family phage protein	A0A0N7KZI9	Stx2-converting_phage	5.2e-76	100.0
WP_001007911.1\|1934238_1934589_-\|head	phage head closure protein	H6WZL5	Escherichia_phage	2.0e-59	100.0
WP_000125984.1\|1934598_1934925_-\|head,tail	phage gp6-like head-tail connector protein	A0A0P0ZDE0	Stx2-converting_phage	5.4e-54	100.0
1936401:1936417	attL	NA	NA	NA	NA
WP_001063099.1\|1937289_1937511_-	hypothetical protein	B6DZA0	Enterobacteria_phage	5.8e-36	100.0
WP_000173011.1\|1937555_1939493_-\|capsid	phage major capsid protein	H6WZL0	Escherichia_phage	0.0e+00	99.7
WP_001369319.1\|1939556_1941218_-\|terminase	terminase large subunit	H6WZK9	Escherichia_phage	0.0e+00	98.9
WP_000958415.1\|1941214_1941778_-\|terminase	terminase small subunit	A0A0P0ZDD1	Stx2-converting_phage	3.8e-79	100.0
WP_000279803.1\|1942067_1942433_-	HNH endonuclease	B6DZ96	Enterobacteria_phage	2.9e-64	96.7
WP_000095736.1\|1942474_1942702_+	DUF3950 domain-containing protein	A0A0P0ZE23	Stx2-converting_phage	1.7e-35	100.0
WP_000736096.1\|1943070_1943295_-	hypothetical protein	NA	NA	NA	NA
WP_012578895.1\|1943380_1943566_-	membrane protein	A0A0P0ZCT3	Stx2-converting_phage	2.7e-18	98.4
WP_000992122.1\|1944083_1944617_-	lysozyme	A0A0N7KZF9	Stx2-converting_phage	2.8e-100	98.3
WP_000731236.1\|1944667_1945012_-	YdfR family protein	A0A0P0ZD64	Stx2-converting_phage	1.0e-58	100.0
WP_000411811.1\|1945016_1945223_-\|holin	holin	O48430	Enterobacteria_phage	1.8e-31	100.0
WP_000143036.1\|1945668_1947519_-	SASA family carbohydrate esterase	B6DZ89	Enterobacteria_phage	0.0e+00	98.4
WP_001344632.1\|1947966_1948098_-	DUF3927 family protein	H6WZJ7	Escherichia_phage	5.2e-08	85.7
WP_000705364.1\|1948941_1949463_-	hypothetical protein	NA	NA	NA	NA
WP_000476993.1\|1949446_1949674_-	transcriptional regulator	NA	NA	NA	NA
WP_001003381.1\|1949751_1950159_+	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	2.5e-24	46.2
WP_000379591.1\|1950351_1950504_+	DUF1391 family protein	M4QQ57	Salicola_phage	6.6e-07	53.2
WP_001344637.1\|1950515_1950881_+	hypothetical protein	NA	NA	NA	NA
WP_001328010.1\|1950849_1951137_-	hypothetical protein	NA	NA	NA	NA
WP_000854559.1\|1951552_1951741_+	cell division inhibition protein DicB	NA	NA	NA	NA
WP_108988479.1\|1951737_1951872_+	DUF1482 family protein	NA	NA	NA	NA
WP_085948178.1\|1951923_1953136_+\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	1.7e-169	99.7
WP_159090333.1\|1953102_1953249_+	hypothetical protein	A0A0N7BTS3	Escherichia_phage	1.4e-06	96.2
WP_085948178.1\|1955650_1956864_-\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	1.7e-169	99.7
WP_001296941.1\|1957203_1957440_+	excisionase family protein	S4TND0	Salmonella_phage	6.1e-15	50.7
WP_000876990.1\|1957474_1958755_+\|integrase	site-specific integrase	B6DZ48	Enterobacteria_phage	1.9e-155	62.1
WP_001360138.1\|1958774_1958885_-	hypothetical protein	NA	NA	NA	NA
WP_000836079.1\|1958942_1959962_-	Zn-dependent oxidoreductase	E3SJ82	Synechococcus_phage	9.7e-17	25.9
WP_001295394.1\|1959973_1961188_-	starvation-sensing protein RspA	Q6A202	Oenococcus_phage	1.4e-46	29.0
WP_000598292.1\|1961393_1961720_-	YnfA family protein	A0A218MNG8	uncultured_virus	9.9e-24	55.6
WP_000705211.1\|1961854_1962196_+	DUF1283 family protein	NA	NA	NA	NA
WP_001138581.1\|1962230_1962791_+	spermidine N1-acetyltransferase	NA	NA	NA	NA
WP_001321287.1\|1962793_1963504_-	YnfC family lipoprotein	NA	NA	NA	NA
WP_001307224.1\|1963611_1963917_+	DUF1161 domain-containing protein	NA	NA	NA	NA
WP_000041554.1\|1964115_1966542_+	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	2.0e-214	49.0
WP_001342196.1\|1966602_1969026_+	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	2.2e-208	48.6
WP_000213028.1\|1969036_1969654_+	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	9.5e-76	59.6
WP_000526492.1\|1969655_1970510_+	dimethyl sulfoxide reductase anchor subunit	NA	NA	NA	NA
WP_000148710.1\|1970552_1971167_+	Tat proofreading chaperone DmsD	A0A077SLS7	Escherichia_phage	8.7e-29	36.3
WP_071526378.1\|1971325_1972618_+	voltage-gated ClC-type chloride channel ClcB	NA	NA	NA	NA
WP_000919226.1\|1972570_1973266_-	ATP-dependent dethiobiotin synthetase BioD	NA	NA	NA	NA
WP_000225276.1\|1973390_1974611_-	DNA-binding transcriptional repressor Mlc	NA	NA	NA	NA
1974058:1974074	attR	NA	NA	NA	NA
WP_001019545.1\|1974745_1975639_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000091840.1\|1975745_1976999_+	MFS transporter	NA	NA	NA	NA
WP_000743951.1\|1977395_1977731_+	acid shock protein	NA	NA	NA	NA
WP_000233090.1\|1977823_1977907_+	hypothetical protein	NA	NA	NA	NA
WP_001260840.1\|1978006_1978828_+\|protease	serine protease	NA	NA	NA	NA

DBSCAN-SWA_11

2102309 : 2140393

Enterobacteria_phage(86.11%)

transposase,tRNA,portal,plate,terminase,tail,holin,head,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_100206497.1\|2102309_2102588_+	DUF4761 family protein	A0A0A7NV42	Enterobacteria_phage	6.2e-27	93.4
WP_000159459.1\|2102598_2102877_+	hypothetical protein	A0A0A7NRX5	Enterobacteria_phage	1.5e-33	78.3
WP_000514277.1\|2102888_2103131_+	DUF4754 family protein	A0A0A7NQ71	Enterobacteria_phage	2.3e-38	100.0
WP_000165075.1\|2103195_2104077_-\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	1.9e-114	92.6
WP_000686506.1\|2105649_2106609_+	recombinase	A0A0A7NPX4	Enterobacteria_phage	7.1e-179	98.4
WP_000211267.1\|2106613_2106925_+	chromosome partitioning protein	A0A0A7NPT5	Enterobacteria_phage	2.2e-41	83.5
WP_001390707.1\|2107289_2107559_+	hypothetical protein	NA	NA	NA	NA
WP_000236489.1\|2108121_2108646_+	hypothetical protein	NA	NA	NA	NA
WP_000087824.1\|2108660_2109707_-\|portal	phage portal protein	A0A0A7NPT9	Enterobacteria_phage	1.9e-201	99.1
WP_000613748.1\|2109706_2111458_-\|terminase	terminase	A0A0A7NV54	Enterobacteria_phage	0.0e+00	97.3
WP_001262673.1\|2111612_2112449_+\|capsid	phage capsid scaffolding protein	A0A0A7NRY7	Enterobacteria_phage	2.7e-150	100.0
WP_001055104.1\|2112472_2113525_+\|capsid	phage major capsid protein, P2 family	A0A0A7NQ82	Enterobacteria_phage	1.3e-194	97.7
WP_000632344.1\|2113570_2114371_+\|terminase	terminase	A0A0A7NPX9	Enterobacteria_phage	6.6e-130	91.4
WP_000063082.1\|2114473_2114968_+\|head	head completion/stabilization protein	A0A0A7NPU2	Enterobacteria_phage	2.7e-89	99.4
WP_000864901.1\|2114967_2115168_+\|tail	tail protein	A0A0A7NV57	Enterobacteria_phage	3.5e-32	100.0
WP_000104350.1\|2115170_2115494_+\|holin	holin	A0A0A7NRY9	Enterobacteria_phage	1.6e-50	99.1
WP_000072327.1\|2115490_2115883_+	M15 family metallopeptidase	A0A0A7NQ86	Enterobacteria_phage	5.8e-71	100.0
WP_000780569.1\|2115879_2116287_+	DUF2570 domain-containing protein	A0A0A7NPY2	Enterobacteria_phage	4.5e-66	98.5
WP_000920593.1\|2116424_2116892_+\|tail	phage tail protein	A0A0A7NPU6	Enterobacteria_phage	1.0e-85	99.4
WP_000356341.1\|2116884_2117520_+\|tail	tail protein	A0A0A7NV60	Enterobacteria_phage	3.1e-114	99.5
WP_001271894.1\|2117516_2118098_+\|plate	phage baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	1.0e-100	96.9
WP_000213447.1\|2118094_2118445_+\|plate	baseplate assembly protein	A0A0A7NQ90	Enterobacteria_phage	9.2e-60	100.0
WP_001111942.1\|2118448_2119345_+\|plate	baseplate assembly protein	A0A0A7NPY5	Enterobacteria_phage	1.1e-154	98.0
WP_000071739.1\|2119337_2119868_+\|tail	phage tail protein I	A0A0A7NPV1	Enterobacteria_phage	1.1e-93	99.4
WP_000108519.1\|2119870_2122003_+\|tail	phage tail protein	U5N099	Enterobacteria_phage	4.2e-131	66.7
WP_000144026.1\|2122002_2122581_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	1.7e-95	89.0
WP_000954196.1\|2122624_2123197_-	serine acetyltransferase	NA	NA	NA	NA
WP_000979957.1\|2123353_2123842_-\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	3.0e-85	99.4
WP_000853433.1\|2123854_2126662_-\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	0.0e+00	94.9
WP_000333503.1\|2126648_2126804_-\|tail	GpE family phage tail protein	A0A0A7NQ96	Enterobacteria_phage	9.7e-22	96.1
WP_000651581.1\|2126812_2127187_-\|tail	tail protein	A0A0A7NPZ0	Enterobacteria_phage	6.9e-37	73.2
WP_000290445.1\|2127242_2127755_-\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	7.8e-92	98.2
WP_000005431.1\|2127754_2128939_-\|tail	phage tail sheath family protein	A0A0A7NV69	Enterobacteria_phage	8.1e-225	99.0
WP_000132811.1\|2129096_2130206_+	phage late control D family protein	A0A0A7NQ97	Enterobacteria_phage	9.6e-204	98.6
WP_001035742.1\|2130431_2131934_+	DNA-binding protein	NA	NA	NA	NA
WP_000488103.1\|2132177_2132438_+	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA
WP_000078923.1\|2132628_2132769_+	Hok/Gef family protein	A0A0A7NPZ4	Enterobacteria_phage	4.5e-18	95.7
WP_001229265.1\|2133075_2133375_-	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	7.2e-13	40.0
WP_000672378.1\|2133379_2135767_-\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_000018594.1\|2135781_2136765_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	1.4e-33	38.5
WP_001386830.1\|2137048_2137093_-	pheST operon leader peptide PheM	NA	NA	NA	NA
WP_000124850.1\|2137215_2137572_-	50S ribosomal protein L20	NA	NA	NA	NA
WP_001124225.1\|2137624_2137822_-	50S ribosomal protein L35	NA	NA	NA	NA
WP_001700733.1\|2137918_2138461_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	6.3e-15	32.9
WP_001144192.1\|2138464_2140393_-\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	3.2e-130	37.4

DBSCAN-SWA_12

2360025 : 2447917

103

Escherichia_phage(31.75%)

transposase,integrase,portal,terminase,head,holin,tail,capsid

attL 2446384:2446443|attR 2460687:2460767

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085948178.1\|2360025_2361239_-\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	1.7e-169	99.7
WP_159090334.1\|2361244_2362369_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1B0VCD8	Salmonella_phage	4.4e-188	91.6
WP_000879833.1\|2363760_2364558_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000734033.1\|2364567_2365119_-	Raf kinase inhibitor-like protein YbcL	NA	NA	NA	NA
WP_001070440.1\|2365287_2365620_-	SMR family multidrug efflux protein EmrE	NA	NA	NA	NA
WP_001274299.1\|2365953_2366268_-	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA
WP_000994449.1\|2366481_2368140_+	flagellar basal body M-ring protein FliF	NA	NA	NA	NA
WP_000067950.1\|2368132_2369128_+	flagellar motor switch protein FliG	NA	NA	NA	NA
WP_001282694.1\|2369120_2369807_+	flagellar assembly protein FliH	NA	NA	NA	NA
WP_000213292.1\|2369806_2371180_+	flagellum-specific ATP synthase FliI	NA	NA	NA	NA
WP_000807584.1\|2371198_2371642_+	flagella biosynthesis chaperone FliJ	NA	NA	NA	NA
WP_000620092.1\|2371638_2372766_+	flagellar hook length control protein FliK	NA	NA	NA	NA
WP_000133124.1\|2372870_2373335_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA
WP_001295641.1\|2373339_2374344_+	flagellar motor switch protein FliM	NA	NA	NA	NA
WP_001282098.1\|2374340_2374754_+	flagellar motor switch protein FliN	NA	NA	NA	NA
WP_001302429.1\|2374756_2375122_+	flagellar type III secretion system protein FliO	NA	NA	NA	NA
WP_001253450.1\|2375121_2375859_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA
WP_000187358.1\|2375868_2376138_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA
WP_000942326.1\|2376145_2376931_+	flagellar type III secretion system protein FliR	NA	NA	NA	NA
WP_000103994.1\|2377220_2377844_+	transcriptional regulator RcsA	NA	NA	NA	NA
WP_071524607.1\|2377887_2378130_-	protein DsrB	NA	NA	NA	NA
WP_000844800.1\|2378238_2378466_+	peroxide/acid resistance protein YodD	NA	NA	NA	NA
WP_000949111.1\|2378763_2379579_+	mannosyl-3-phosphoglycerate phosphatase-related protein	NA	NA	NA	NA
WP_001377491.1\|2379575_2381270_-	cellulose biosynthesis regulator YedQ	A0A127AWB9	Bacillus_phage	1.3e-18	35.6
WP_000009309.1\|2381440_2381623_-	DUF2158 domain-containing protein	NA	NA	NA	NA
WP_000922683.1\|2381701_2382619_-	DUF808 domain-containing protein	NA	NA	NA	NA
WP_001210913.1\|2382791_2383712_+	drug/metabolite exporter YedA	NA	NA	NA	NA
WP_000786004.1\|2383700_2384171_-	very short patch repair endonuclease	E5E3X5	Burkholderia_phage	1.5e-33	47.6
WP_001157238.1\|2384151_2385570_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.8e-101	55.3
WP_000365565.1\|2385636_2386332_-	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	2.1e-07	28.0
WP_001313057.1\|2386371_2386737_-	hypothetical protein	NA	NA	NA	NA
WP_000824375.1\|2387303_2388467_+	porin OmpC	Q1MVN1	Enterobacteria_phage	7.2e-109	56.2
WP_000218214.1\|2389057_2389909_+	protein deglycase HchA	NA	NA	NA	NA
WP_000826738.1\|2390016_2391375_-	two-component system sensor histidine kinase HprS	NA	NA	NA	NA
WP_001339045.1\|2391374_2392046_-	response regulator transcription factor HprR	W8CYM9	Bacillus_phage	5.4e-32	35.2
WP_000920136.1\|2392178_2392592_+	hydroxyisourate hydrolase	NA	NA	NA	NA
WP_000730130.1\|2392700_2393705_+	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA
WP_001240109.1\|2393705_2394341_+	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA
WP_122993428.1\|2394576_2395248_+	metal-binding protein ZinT	NA	NA	NA	NA
WP_001079074.1\|2395590_2396121_+	cytochrome b	A0A0U2QLA7	Escherichia_phage	1.9e-56	100.0
WP_122993429.1\|2397355_2398369_-	peptidase M85	NA	NA	NA	NA
WP_001023476.1\|2398774_2399044_-\|tail	phage tail protein	A0A1U9AJC2	Stx1_converting_phage	2.7e-43	97.8
WP_106888379.1\|2399045_2400368_-\|tail	phage tail protein	A0A0P0ZCC1	Stx2-converting_phage	1.6e-75	96.4
WP_001230455.1\|2400432_2401032_-	Ail/Lom family outer membrane beta-barrel protein	Q687E7	Enterobacteria_phage	8.8e-111	99.0
WP_000514851.1\|2401099_2404576_-	host specificity protein J	Q687E8	Enterobacteria_phage	0.0e+00	96.7
WP_122996286.1\|2404822_2405455_-\|tail	tail assembly protein	Q6H9T3	Enterobacteria_phage	1.0e-104	97.6
WP_001152113.1\|2406148_2406847_-\|tail	phage minor tail protein L	Q687F1	Enterobacteria_phage	4.7e-132	99.1
WP_000847298.1\|2406846_2407176_-\|tail	phage tail protein	Q687F2	Enterobacteria_phage	4.3e-59	100.0
WP_000081780.1\|2407172_2409785_-\|tail	phage tail tape measure protein	Q687F3	Enterobacteria_phage	0.0e+00	96.1
WP_000533440.1\|2409765_2410179_-\|tail	phage tail assembly protein T	Q687F4	Enterobacteria_phage	3.2e-43	83.2
WP_000479045.1\|2410205_2410628_-\|tail	phage minor tail protein G	Q687F5	Enterobacteria_phage	1.7e-71	98.6
WP_000235098.1\|2410641_2411394_-\|tail	phage tail protein	Q687F6	Enterobacteria_phage	4.9e-135	99.2
WP_000683079.1\|2411401_2411797_-\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	1.5e-58	82.4
WP_000974980.1\|2411793_2412327_-\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	1.6e-58	66.7
WP_001204554.1\|2412342_2412696_-\|tail	tail attachment protein	A0A0K2FJB7	Enterobacteria_phage	1.5e-41	70.1
WP_000201501.1\|2412688_2413072_-	DNA-packaging protein FI	NA	NA	NA	NA
WP_000522591.1\|2413123_2414152_-\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	3.6e-112	61.0
WP_000256823.1\|2414209_2414557_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	8.9e-23	58.1
WP_001253979.1\|2414593_2416099_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	3.0e-99	53.5
WP_001369121.1\|2416088_2417681_-\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	7.1e-184	60.9
WP_000259002.1\|2417677_2417884_-\|head,tail	head-tail joining protein	K7PM10	Enterobacteria_phage	7.9e-11	56.9
WP_001426431.1\|2417867_2419796_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	3.6e-262	66.4
WP_001426432.1\|2419767_2420274_-	DNA-packaging protein	O64316	Escherichia_phage	7.4e-34	47.3
WP_001444498.1\|2420700_2420925_+	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	1.3e-19	90.6
WP_001302717.1\|2421006_2421321_-	PerC family transcriptional regulator	NA	NA	NA	NA
WP_012817896.1\|2421846_2422032_-	membrane protein	A0A1U9AJA4	Stx1_converting_phage	4.0e-22	83.6
WP_001092858.1\|2422549_2423083_-	lysozyme	Q6H9V6	Enterobacteria_phage	1.9e-101	96.0
WP_000284516.1\|2423641_2423857_-\|holin	holin	A0A0P0ZC45	Stx2-converting_phage	7.7e-33	97.2
WP_001290231.1\|2423933_2424206_-	DUF826 domain-containing protein	A0A0P0ZBB8	Stx2-converting_phage	2.2e-21	100.0
WP_000143458.1\|2424246_2424426_-	DUF1378 family protein	A0A2R2Z345	Escherichia_phage	2.2e-25	100.0
WP_024222300.1\|2424563_2426501_-	SASA family carbohydrate esterase	Q6H9W1	Enterobacteria_phage	0.0e+00	96.4
WP_153244796.1\|2426486_2426630_+	hypothetical protein	H6WZJ8	Escherichia_phage	3.7e-15	97.4
WP_000466957.1\|2426979_2427411_-	tellurite resistance TerB family protein	H6WZJ6	Escherichia_phage	3.3e-67	97.2
WP_000422741.1\|2427498_2427924_+	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	1.5e-48	99.0
WP_000624722.1\|2427920_2428271_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	4.7e-40	66.4
WP_000080194.1\|2428301_2429915_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.4e-181	64.0
WP_000301789.1\|2430400_2431114_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_000917764.1\|2431248_2431446_-	hypothetical protein	S5MQK8	Escherichia_phage	6.8e-28	98.5
WP_000640033.1\|2431669_2432224_-	DUF1133 family protein	A0A0U2S606	Escherichia_phage	8.0e-66	67.4
WP_001217447.1\|2432232_2432592_-	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	5.0e-37	63.5
WP_001265229.1\|2432604_2433654_-	DUF968 domain-containing protein	U5P0K4	Shigella_phage	1.2e-110	54.6
WP_000191872.1\|2433655_2433928_-	hypothetical protein	S4TNP0	Salmonella_phage	1.1e-12	53.0
WP_000756596.1\|2434049_2434394_-	YgiW/YdeI family stress tolerance OB fold protein	A0A1I9LJU6	Stx_converting_phage	6.1e-56	99.1
WP_000935259.1\|2434513_2434726_-	type I toxin-antitoxin system Hok family toxin	A0A0P0ZAX5	Stx2-converting_phage	6.0e-30	100.0
WP_000104474.1\|2434959_2435517_-	DUF551 domain-containing protein	A0A0N7KZV3	Escherichia_phage	2.8e-34	41.7
WP_000683609.1\|2435518_2435737_-	DUF4014 family protein	A0A2R2Z311	Escherichia_phage	2.3e-21	72.2
WP_000034815.1\|2435864_2436176_-	hypothetical protein	A0A0U2QV73	Escherichia_phage	1.6e-55	91.3
WP_000699809.1\|2436168_2436396_-	hypothetical protein	A0A1B5FPG2	Escherichia_phage	5.1e-11	49.3
WP_000603384.1\|2436392_2436674_-	DNA-binding protein	A0A222YXX1	Escherichia_phage	1.0e-29	73.6
WP_000450617.1\|2436706_2437423_-	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	2.1e-71	62.6
WP_000788760.1\|2437444_2438191_-	ATP-binding protein	A0A088CBP4	Shigella_phage	3.6e-114	83.2
WP_001262366.1\|2438197_2439268_-	hypothetical protein	A0A088CD36	Shigella_phage	1.7e-64	65.7
WP_000693883.1\|2439339_2439765_-	Rha family transcriptional regulator	NA	NA	NA	NA
WP_000391948.1\|2439748_2440030_-	hypothetical protein	K7PHA1	Enterobacteria_phage	8.5e-24	72.6
WP_000362152.1\|2440129_2440549_+	hypothetical protein	K7PK07	Enterobacteria_phage	4.0e-25	65.1
WP_001345283.1\|2440814_2440967_+	DUF1391 family protein	M4QQ57	Salicola_phage	1.7e-07	53.2
WP_000394546.1\|2440978_2441617_+	hypothetical protein	A0A2R2Z306	Escherichia_phage	2.5e-07	41.9
WP_001133037.1\|2441617_2441827_-	hypothetical protein	NA	NA	NA	NA
WP_000449192.1\|2442397_2442586_+	cell division inhibition protein DicB	NA	NA	NA	NA
WP_001090200.1\|2442582_2442774_+	DUF1482 family protein	NA	NA	NA	NA
WP_000048405.1\|2442866_2445254_+\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	5.9e-81	63.8
WP_001300307.1\|2445489_2446287_+	DgsA anti-repressor MtfA	NA	NA	NA	NA
2446384:2446443	attL	NA	NA	NA	NA
WP_001345280.1\|2446642_2447917_+\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	1.4e-76	40.9
WP_001345280.1\|2446642_2447917_+\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	1.4e-76	40.9
2460687:2460767	attR	NA	NA	NA	NA

DBSCAN-SWA_13

2673278 : 2742166

Enterobacteria_phage(20.0%)

integrase,transposase,lysis,protease,terminase,holin,capsid

attL 2711220:2711255|attR 2743106:2743141

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000101907.1\|2673278_2674520_+\|integrase	tyrosine-type recombinase/integrase	A0A1V0E8G8	Vibrio_phage	1.6e-98	43.1
WP_000387403.1\|2675016_2675223_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_001345228.1\|2675177_2676986_+	host cell division inhibitor Icd-like protein	A0A2H4JGN8	uncultured_Caudovirales_phage	2.9e-08	41.1
WP_023981888.1\|2677201_2677441_+	hypothetical protein	NA	NA	NA	NA
WP_001204078.1\|2677413_2677647_+	hypothetical protein	NA	NA	NA	NA
WP_001205000.1\|2677639_2677873_+	hypothetical protein	NA	NA	NA	NA
WP_000770163.1\|2677878_2678178_+	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_000833625.1\|2678174_2679575_+	AAA family ATPase	A0A2H4JFA4	uncultured_Caudovirales_phage	1.6e-115	60.1
WP_001080641.1\|2679776_2680022_+	hypothetical protein	NA	NA	NA	NA
WP_000391151.1\|2680152_2680347_+	hypothetical protein	NA	NA	NA	NA
WP_001018604.1\|2680350_2680512_+	hypothetical protein	NA	NA	NA	NA
WP_001229488.1\|2680639_2681128_+\|terminase	terminase small subunit	A0A0P0ZCQ9	Stx2-converting_phage	3.9e-24	41.7
WP_001369202.1\|2681290_2682214_+\|capsid	phage capsid protein	A0A0R6PHC6	Moraxella_phage	1.2e-13	24.9
WP_001113637.1\|2685590_2686238_+	nitrate/nitrite response regulator protein NarP	NA	NA	NA	NA
WP_001211568.1\|2686272_2687325_-	cytochrome c-type biogenesis protein CcmH	NA	NA	NA	NA
WP_000824439.1\|2687321_2687879_-	thiol:disulfide interchange protein DsbE	NA	NA	NA	NA
WP_000982426.1\|2687875_2689819_-	heme lyase CcmF/NrfE family subunit	NA	NA	NA	NA
WP_001026418.1\|2689815_2690295_-	cytochrome c maturation protein CcmE	NA	NA	NA	NA
WP_000186540.1\|2690291_2690501_-	heme exporter protein CcmD	NA	NA	NA	NA
WP_001295447.1\|2690497_2691235_-	heme exporter protein CcmC	NA	NA	NA	NA
WP_000971722.1\|2691276_2691939_-	heme exporter protein CcmB	NA	NA	NA	NA
WP_000888560.1\|2691935_2692553_-	cytochrome c biogenesis heme-transporting ATPase CcmA	G3M9Y6	Bacillus_virus	1.9e-12	25.5
WP_000528376.1\|2692571_2693174_-	cytochrome c-type protein NapC	NA	NA	NA	NA
WP_000835176.1\|2693183_2693633_-	nitrate reductase cytochrome c-type subunit	NA	NA	NA	NA
WP_000013506.1\|2693629_2694493_-	quinol dehydrogenase ferredoxin subunit NapH	NA	NA	NA	NA
WP_000091291.1\|2694479_2695175_-	ferredoxin-type protein NapG	NA	NA	NA	NA
WP_000778069.1\|2695181_2697668_-	nitrate reductase catalytic subunit NapA	NA	NA	NA	NA
WP_000557378.1\|2697664_2697928_-	chaperone NapD	NA	NA	NA	NA
WP_000686723.1\|2697917_2698412_-	ferredoxin-type protein NapF	NA	NA	NA	NA
WP_000849214.1\|2698820_2699309_+\|protease	serine protease inhibitor ecotin	NA	NA	NA	NA
WP_000758043.1\|2699457_2701104_-	malate dehydrogenase (quinone)	NA	NA	NA	NA
WP_000422230.1\|2701321_2702965_-	microcin J25 efflux ABC transporter YojI	W8CYL7	Bacillus_phage	9.5e-14	24.0
WP_000884922.1\|2703040_2703691_-	DNA oxidative demethylase AlkB	A0A2K9L3R7	Tupanvirus	1.4e-05	31.7
WP_000786386.1\|2703690_2704755_-	bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada	A0A0G2Y1B6	Acanthamoeba_polyphaga_mimivirus	1.8e-18	50.5
WP_000406116.1\|2704828_2705884_-	FAD:protein FMN transferase ApbE	NA	NA	NA	NA
WP_000865576.1\|2705995_2707087_-	porin OmpC	Q1MVN1	Enterobacteria_phage	9.4e-119	60.1
WP_001249151.1\|2707825_2710498_+	phosphotransferase RcsD	NA	NA	NA	NA
WP_001061917.1\|2710514_2711165_+	transcriptional regulator RcsB	NA	NA	NA	NA
2711220:2711255	attL	NA	NA	NA	NA
WP_000876014.1\|2711364_2714214_-	two-component system sensor histidine kinase RcsC	A0A1V0SGX0	Hokovirus	1.4e-41	27.2
WP_001225855.1\|2714488_2715265_-	YfaP family protein	NA	NA	NA	NA
WP_001104541.1\|2715269_2716919_-	DUF2300 domain-containing protein	NA	NA	NA	NA
WP_122993426.1\|2716919_2721314_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA
WP_001025665.1\|2722115_2723438_+	type III secretion system effector NleA	H6WZN2	Escherichia_phage	9.7e-227	85.5
WP_072145680.1\|2724131_2724770_-	T3SS effector NleG family protein	B6DZC0	Enterobacteria_phage	2.4e-34	43.0
WP_085948178.1\|2724807_2726020_+\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	1.7e-169	99.7
WP_000881316.1\|2726060_2726585_-	hypothetical protein	A0A0N7CEE8	Salmonella_phage	1.2e-84	89.7
WP_000092247.1\|2726734_2727172_-\|lysis	lysis protein	A0A0P0ZBQ9	Stx2-converting_phage	5.0e-71	97.9
WP_000075144.1\|2727168_2727666_-	lysozyme	A0A1B5FP97	Escherichia_phage	1.9e-90	98.2
WP_000284524.1\|2727665_2727881_-\|holin	holin	A0A0P0ZC45	Stx2-converting_phage	4.5e-33	98.6
WP_012578864.1\|2728023_2728422_+	hypothetical protein	H6WZJ8	Escherichia_phage	6.9e-11	83.3
WP_000499454.1\|2728502_2728661_-	DUF3927 family protein	NA	NA	NA	NA
WP_001235460.1\|2729753_2730377_-	antitermination protein	K7PM87	Enterobacteria_phage	9.8e-113	98.6
WP_001028854.1\|2730373_2731039_-	serine/threonine protein phosphatase	Q5TJL8	Enterobacteria_phage	5.0e-131	99.5
WP_001223927.1\|2731035_2731638_-	recombination protein NinG	A0A1U9AJF8	Stx1_converting_phage	1.6e-91	94.6
WP_001108084.1\|2731612_2732179_-	endonuclease	A0A1U9AJK5	Stx1_converting_phage	6.6e-108	99.5
WP_042352449.1\|2732726_2733659_+	hypothetical protein	A0A1U9AJG3	Stx1_converting_phage	6.1e-151	99.7
WP_001345214.1\|2733697_2734525_+	hypothetical protein	A0A1U9AJG3	Stx1_converting_phage	1.6e-150	99.6
WP_001254228.1\|2735028_2735211_-	NinE family protein	A0A1U9AJF6	Stx1_converting_phage	1.1e-29	100.0
WP_001281192.1\|2735367_2735712_+	hypothetical protein	K7PJY7	Enterobacterial_phage	5.3e-60	100.0
WP_001444001.1\|2735817_2736036_+	excisionase	K7PKU2	Enterobacteria_phage	2.4e-34	98.6
WP_000533670.1\|2736013_2737084_+\|integrase	tyrosine-type recombinase/integrase	K7PHK0	Enterobacteria_phage	1.1e-196	98.0
WP_001215757.1\|2737078_2737705_-	DUF1175 domain-containing protein	NA	NA	NA	NA
WP_000012296.1\|2737701_2739390_-	DUF2138 domain-containing protein	NA	NA	NA	NA
WP_108988489.1\|2739538_2742166_-	DNA topoisomerase (ATP-hydrolyzing) subunit A	G3M9Z5	Bacillus_virus	8.1e-92	30.4
2743106:2743141	attR	NA	NA	NA	NA

DBSCAN-SWA_14

3091900 : 3178097

Enterobacteria_phage(73.68%)

tRNA,transposase,portal,protease,terminase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001298974.1\|3091900_3092638_-\|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN	NA	NA	NA	NA
WP_000219193.1\|3092769_3094104_+	ATP-dependent RNA helicase SrmB	E3T5E1	Cafeteria_roenbergensis_virus	2.9e-45	30.8
WP_000365855.1\|3094313_3095195_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000189207.1\|3095298_3095886_+	cysteine/O-acetylserine transporter	NA	NA	NA	NA
WP_000627807.1\|3095941_3096325_-	autonomous glycyl radical cofactor GrcA	Q7Y524	Enterobacteria_phage	1.4e-32	72.0
WP_001262716.1\|3096628_3097318_+	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	7.1e-56	48.8
WP_000997403.1\|3097365_3098403_-\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
WP_001098726.1\|3098609_3099029_+	thioredoxin TrxC	A0A0K2FIM3	Achromobacter_phage	2.8e-15	38.5
WP_001341635.1\|3099097_3099796_+	DTW domain-containing protein	NA	NA	NA	NA
WP_000083007.1\|3099827_3102488_+	protein lysine acetyltransferase	NA	NA	NA	NA
WP_000949265.1\|3102601_3103957_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_001300818.1\|3104002_3104326_+	YfiM family lipoprotein	NA	NA	NA	NA
WP_000841103.1\|3104322_3105621_-	alpha-ketoglutarate permease	Q6JIH2	Burkholderia_virus	1.3e-45	32.2
WP_001235102.1\|3111473_3114047_-	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	2.6e-127	35.3
WP_000040115.1\|3114176_3114908_-	polyphenol oxidase	NA	NA	NA	NA
WP_000079107.1\|3114904_3115885_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_000197686.1\|3116019_3116757_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_000178456.1\|3117027_3117369_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_001386991.1\|3117472_3117520_+	hypothetical protein	NA	NA	NA	NA
WP_000200116.1\|3117618_3118779_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_000225214.1\|3118821_3119943_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_001168054.1\|3119953_3121024_-	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	5.3e-90	51.2
WP_000976004.1\|3121233_3121599_+	DUF2799 domain-containing protein	NA	NA	NA	NA
WP_001212391.1\|3121748_3122267_+	YfiR family protein	NA	NA	NA	NA
WP_000969032.1\|3122256_3123483_+	diguanylate cyclase DgcN	NA	NA	NA	NA
WP_000589821.1\|3123498_3123981_+	OmpA family protein	NA	NA	NA	NA
WP_000065253.1\|3124057_3124405_-	50S ribosomal protein L19	NA	NA	NA	NA
WP_000264774.1\|3124446_3125214_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_000043335.1\|3125244_3125793_-	ribosome maturation factor RimM	NA	NA	NA	NA
WP_000256450.1\|3125811_3126060_-	30S ribosomal protein S16	NA	NA	NA	NA
WP_000460032.1\|3126308_3127670_-	signal recognition particle protein	NA	NA	NA	NA
WP_001338897.1\|3127836_3128628_+	inner membrane protein YpjD	NA	NA	NA	NA
WP_010723175.1\|3128648_3129935_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_001296310.1\|3129989_3130583_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_001059169.1\|3130705_3131584_+	NAD(+) kinase	NA	NA	NA	NA
WP_000880910.1\|3131669_3133331_+	DNA repair protein RecN	NA	NA	NA	NA
WP_001203437.1\|3133479_3133821_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_001117838.1\|3133882_3134173_-	RnfH family protein	NA	NA	NA	NA
WP_000600190.1\|3134162_3134639_-	type II toxin-antitoxin system toxin RatA	NA	NA	NA	NA
WP_000162574.1\|3134770_3135253_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	4.0e-29	46.8
WP_001217540.1\|3136101_3136350_+	DinI-like family protein	Q687E4	Enterobacteria_phage	2.4e-38	100.0
WP_001023452.1\|3136717_3136987_-\|tail	phage tail protein	Q687E5	Enterobacteria_phage	6.4e-45	100.0
WP_001230455.1\|3138374_3138974_-	Ail/Lom family outer membrane beta-barrel protein	Q687E7	Enterobacteria_phage	8.8e-111	99.0
WP_000514851.1\|3139041_3142518_-	host specificity protein J	Q687E8	Enterobacteria_phage	0.0e+00	96.7
WP_122996286.1\|3142764_3143397_-\|tail	tail assembly protein	Q6H9T3	Enterobacteria_phage	1.0e-104	97.6
WP_001369128.1\|3143342_3144086_-\|tail	phage tail protein	Q6H9T4	Enterobacteria_phage	3.3e-147	98.0
WP_001152113.1\|3144091_3144790_-\|tail	phage minor tail protein L	Q687F1	Enterobacteria_phage	4.7e-132	99.1
WP_000847298.1\|3144789_3145119_-\|tail	phage tail protein	Q687F2	Enterobacteria_phage	4.3e-59	100.0
WP_000918243.1\|3145115_3147761_-\|tail	phage tail tape measure protein	Q687F3	Enterobacteria_phage	0.0e+00	100.0
WP_000532073.1\|3147804_3148113_-\|tail	phage tail assembly protein T	Q687F4	Enterobacteria_phage	1.3e-54	100.0
WP_000479043.1\|3148139_3148562_-\|tail	phage minor tail protein G	Q687F5	Enterobacteria_phage	5.1e-73	100.0
WP_000235090.1\|3148575_3149328_-\|tail	phage tail protein	Q687F6	Enterobacteria_phage	5.8e-136	100.0
WP_001444799.1\|3149335_3149626_-\|tail	tail protein	Q9EYD7	Enterobacteria_phage	2.1e-49	99.0
WP_085948178.1\|3149680_3150893_+\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	1.7e-169	99.7
WP_000682711.1\|3150896_3151043_-	hypothetical protein	Q687G0	Enterobacteria_phage	3.5e-21	100.0
WP_000974958.1\|3151055_3151679_-\|tail	phage tail protein	Q8VNN3	Enterobacteria_phage	8.9e-106	100.0
WP_001281348.1\|3151681_3151963_-	DNA breaking-rejoining protein	Q8VNN4	Enterobacteria_phage	2.1e-46	100.0
WP_001097065.1\|3151955_3152282_-	DUF2190 family protein	Q9EYD5	Enterobacteria_phage	6.1e-50	100.0
WP_106895285.1\|3152369_3154334_-\|protease	Clp protease ClpP	S5M7Q8	Escherichia_phage	0.0e+00	99.8
WP_000974564.1\|3154337_3155840_-\|portal	phage portal protein	Q9EYD2	Enterobacteria_phage	4.8e-291	100.0
WP_000102413.1\|3155839_3156052_-	hypothetical protein	Q687G1	Enterobacteria_phage	2.3e-29	98.6
WP_108988492.1\|3156048_3158172_-\|terminase	phage terminase large subunit family protein	Q9EYD1	Enterobacteria_phage	0.0e+00	99.9
WP_000373407.1\|3158168_3158645_-	DUF1441 family protein	Q8VNN8	Enterobacteria_phage	3.3e-84	100.0
WP_012816791.1\|3159119_3159305_-	membrane protein	A0A0P0ZCT3	Stx2-converting_phage	1.2e-18	100.0
WP_000752026.1\|3160308_3160578_-	Shiga toxin Stx1a subunit B	Q7AYI7	Enterobacteria_phage	1.6e-43	100.0
WP_000691354.1\|3160587_3161535_-	Shiga toxin Stx1 subunit A	Q777W4	Enterobacteria_phage	3.2e-171	100.0
WP_001204849.1\|3162041_3162476_-	antitermination protein	Q8VNP1	Enterobacteria_phage	4.3e-83	100.0
WP_000144764.1\|3162468_3162663_-	protein ninH	G9L694	Escherichia_phage	1.9e-30	100.0
WP_001108006.1\|3162659_3163265_-	recombination protein NinG	Q8VNP2	Enterobacteria_phage	1.9e-97	100.0
WP_000211413.1\|3164062_3164767_-	phage antirepressor Ant	Q8VNP5	Enterobacteria_phage	9.6e-133	100.0
WP_001254256.1\|3165041_3165224_-	NinE family protein	A0A0N7C1X3	Escherichia_phage	5.7e-29	100.0
WP_000153268.1\|3165220_3165748_-	phage N-6-adenine-methyltransferase	Q9EYC2	Enterobacteria_phage	1.6e-100	100.0
WP_001303571.1\|3165744_3166191_-	recombination protein NinB	Q8VNP6	Enterobacteria_phage	2.4e-81	100.0
WP_001449504.1\|3166147_3166384_-	restriction alleviation protein, Lar family	Q687G3	Enterobacteria_phage	9.3e-40	100.0
WP_000103678.1\|3166394_3166610_-	hypothetical protein	A0A0N7KZ98	Stx2-converting_phage	7.7e-33	100.0
WP_001000130.1\|3166742_3167021_-	hypothetical protein	Q9EYB9	Enterobacteria_phage	4.4e-49	100.0
WP_001036037.1\|3167090_3167360_-	hypothetical protein	Q687G4	Enterobacteria_phage	8.4e-45	100.0
WP_000131492.1\|3167359_3168796_-	AAA family ATPase	Q8VNP7	Enterobacteria_phage	6.1e-275	100.0
WP_000065668.1\|3168785_3169685_-	hypothetical protein	Q8VNP8	Enterobacteria_phage	1.6e-164	100.0
WP_000166207.1\|3169677_3169824_-	DUF2740 family protein	Q687G5	Enterobacteria_phage	1.1e-19	100.0
WP_001177653.1\|3169858_3170137_-	transcriptional regulator	Q8VNP9	Enterobacteria_phage	3.6e-43	100.0
WP_000335772.1\|3171012_3171636_+	hypothetical protein	Q8VNQ0	Enterobacteria_phage	6.8e-122	99.5
WP_000532424.1\|3171636_3172149_+	single-stranded DNA-binding protein	Q8VNQ1	Enterobacteria_phage	1.8e-75	100.0
WP_001111331.1\|3172162_3172456_+	DUF2856 family protein	Q687G7	Enterobacteria_phage	8.5e-51	100.0
WP_001214463.1\|3172466_3172634_+	DUF2737 family protein	Q687G8	Enterobacteria_phage	3.0e-24	100.0
WP_001289947.1\|3172630_3173230_+	ead/Ea22-like family protein	Q8VNQ2	Enterobacteria_phage	1.8e-111	100.0
WP_085948178.1\|3173581_3174795_-\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	1.7e-169	99.7
WP_000448925.1\|3175859_3176276_+	hypothetical protein	A0A1B5FPM5	Escherichia_phage	1.1e-72	100.0
WP_000214990.1\|3176348_3178097_-	hypothetical protein	A0A1B5FPH1	Escherichia_phage	0.0e+00	99.8

DBSCAN-SWA_15

3251345 : 3258485

Escherichia_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001272924.1\|3251345_3253907_+	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	1.7e-30	20.6
WP_001141347.1\|3254012_3254669_+	protein-serine/threonine phosphatase	A0A222YWF0	Escherichia_phage	5.6e-50	47.2
WP_001297141.1\|3254719_3255487_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	3.3e-70	56.7
WP_000847985.1\|3255682_3256591_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	3.0e-118	76.9
WP_000590389.1\|3256587_3257850_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	3.7e-135	61.4
WP_001278994.1\|3257846_3258485_+	aldolase	A0A077SK32	Escherichia_phage	1.4e-82	75.0

DBSCAN-SWA_16

4785152 : 4830064

Stx2-converting_phage(34.09%)

tRNA,terminase,tail,holin,head,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000956557.1\|4785152_4785686_+	hypothetical protein	K7PKJ4	Enterobacteria_phage	1.1e-99	100.0
WP_001093918.1\|4786103_4786385_-	hypothetical protein	K7PGU0	Enterobacteria_phage	8.7e-45	98.9
WP_001061339.1\|4786421_4786994_-	3'-5' exoribonuclease	K7PLW7	Enterobacteria_phage	6.7e-108	97.9
WP_001094871.1\|4786993_4787728_-	DUF551 domain-containing protein	S5MC19	Escherichia_phage	1.4e-139	98.8
WP_001014294.1\|4787730_4787922_-	hypothetical protein	G9L660	Escherichia_phage	9.5e-27	100.0
WP_000829414.1\|4787974_4788391_-	hypothetical protein	A0A076GCN9	Escherichia_phage	1.4e-30	69.9
WP_000145671.1\|4788537_4789011_-	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	4.0e-66	75.5
WP_001242740.1\|4789007_4789358_-	hypothetical protein	A0A0P0ZBF8	Stx2-converting_phage	1.6e-56	94.8
WP_000008211.1\|4789348_4789885_-	5'-deoxynucleotidase	U5P0T3	Shigella_phage	3.1e-99	98.3
WP_000081302.1\|4790012_4790837_-	YfdQ family protein	Q8SBF9	Shigella_phage	1.0e-149	99.6
WP_000135680.1\|4790902_4791265_-	hypothetical protein	Q8SBF8	Shigella_phage	8.6e-61	100.0
WP_001345148.1\|4791968_4792661_-	helix-turn-helix transcriptional regulator	S5FUZ3	Shigella_phage	8.3e-121	96.1
WP_001191679.1\|4792758_4793019_+	helix-turn-helix transcriptional regulator	K7PJQ8	Enterobacteria_phage	7.8e-40	97.7
WP_000515862.1\|4793011_4793563_+	hypothetical protein	Q8SBF4	Shigella_phage	9.9e-101	99.5
WP_001047110.1\|4795075_4795828_+	antitermination protein	K7PGU5	Enterobacteria_phage	5.3e-137	99.2
WP_001339373.1\|4796137_4796290_+	restriction endonuclease subunit M	A0A2R2Z327	Escherichia_phage	3.4e-19	98.0
WP_000143076.1\|4797107_4798958_+	SASA family carbohydrate esterase	B6DZ89	Enterobacteria_phage	0.0e+00	96.9
WP_000411802.1\|4799406_4799613_+\|holin	holin	A0A0P0ZC45	Stx2-converting_phage	2.4e-31	100.0
WP_000075132.1\|4799612_4800110_+	lysozyme	A0A0N7KZA0	Stx2-converting_phage	2.6e-92	100.0
WP_001208681.1\|4800326_4800512_+	membrane protein	A0A1U9AJA4	Stx1_converting_phage	2.9e-20	78.7
WP_001303878.1\|4801039_4801354_+	PerC family transcriptional regulator	NA	NA	NA	NA
WP_001377217.1\|4801607_4802138_+	HNH endonuclease	H6WZK7	Escherichia_phage	1.2e-90	93.2
WP_000958398.1\|4802253_4802817_+\|terminase	terminase small subunit	B6DZ97	Enterobacteria_phage	7.3e-83	94.1
WP_009453642.1\|4802813_4804475_+\|terminase	terminase large subunit	A0A0N7KZG0	Stx2-converting_phage	0.0e+00	98.7
WP_000173088.1\|4804538_4806476_+\|capsid	phage major capsid protein	H6WZL0	Escherichia_phage	0.0e+00	98.4
WP_001063096.1\|4806520_4806742_+	hypothetical protein	H6WZL1	Escherichia_phage	3.4e-36	100.0
WP_000125988.1\|4809105_4809432_+\|head,tail	phage gp6-like head-tail connector protein	B6ETF0	Enterobacteria_phage	7.0e-54	100.0
WP_001007905.1\|4809441_4809792_+\|head	phage head closure protein	A0A0P0ZB28	Stx2-converting_phage	1.6e-59	100.0
WP_000573374.1\|4809788_4810235_+	HK97 gp10 family phage protein	A0A0P0ZCD2	Stx2-converting_phage	8.1e-77	100.0
WP_000133388.1\|4810231_4810576_+	DUF3168 domain-containing protein	A0A0P0ZC17	Stx2-converting_phage	1.4e-57	100.0
WP_001275461.1\|4810642_4811359_+\|tail	tail protein	A0A0P0ZD29	Stx2-converting_phage	2.1e-127	98.3
WP_001030043.1\|4811364_4811739_+\|tail	tail assembly protein	A0A0P0ZE84	Stx2-converting_phage	1.7e-64	99.2
WP_001453698.1\|4811834_4812044_+	DUF4035 domain-containing protein	A0A0P0ZDE6	Stx2-converting_phage	2.0e-33	100.0
WP_000212952.1\|4812095_4815338_+\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	0.0e+00	93.2
WP_000807964.1\|4815330_4815672_+\|tail	phage tail protein	A0A0P0ZCS8	Stx2-converting_phage	8.7e-63	100.0
WP_001152209.1\|4815671_4816370_+\|tail	phage minor tail protein L	H6WZM3	Escherichia_phage	3.1e-131	98.3
WP_000194763.1\|4816380_4817124_+\|tail	phage tail protein	A0A0P0ZE89	Stx2-converting_phage	5.4e-150	99.2
WP_126303346.1\|4817069_4817702_+\|tail	tail assembly protein	Q6H9T3	Enterobacteria_phage	1.2e-97	90.5
WP_000514845.1\|4817937_4821414_+	host specificity protein J	Q6H9T2	Enterobacteria_phage	0.0e+00	96.1
WP_001216290.1\|4821482_4822106_+	Ail/Lom family outer membrane beta-barrel protein	A0A1U8QHD6	Enterobacteria_phage	1.1e-68	60.4
WP_000279033.1\|4822170_4823484_+\|tail	tail fiber protein	A0A0P0ZD68	Stx2-converting_phage	3.3e-78	99.1
WP_001023417.1\|4823485_4823755_+\|tail	phage tail protein	B6DZB8	Enterobacteria_phage	2.4e-44	98.9
WP_000442132.1\|4823915_4824338_+	DUF1076 domain-containing protein	B6DZB9	Enterobacteria_phage	5.7e-72	97.0
WP_001345294.1\|4824467_4825526_-	T3SS effector EspW	NA	NA	NA	NA
WP_001117798.1\|4825604_4826255_-	T3SS effector NleG family protein	B6DZZ5	Stx2-converting_phage	2.8e-25	37.2
WP_001132154.1\|4826437_4827028_+	T3SS effector guanine nucleotide exchange factor EspM2	NA	NA	NA	NA
WP_001217542.1\|4827529_4827778_-	DinI-like family protein	A5LH55	Enterobacteria_phage	3.1e-38	98.8
WP_000543817.1\|4829026_4830064_+\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA

DBSCAN-SWA_17

4944700 : 5008557

Vibrio_phage(12.5%)

tRNA,protease,integrase,transposase

attL 4986434:4986463|attR 5011924:5011953

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000811566.1\|4944700_4944976_+\|protease	protease activator YjfN	NA	NA	NA	NA
WP_001299838.1\|4945092_4946718_-	isovaleryl-CoA dehydrogenase	NA	NA	NA	NA
WP_000943991.1\|4946801_4947965_-	glutathionylspermidine synthase family protein	B2ZXR7	Ralstonia_phage	4.9e-81	43.8
WP_000101670.1\|4947967_4948606_-	DUF1190 domain-containing protein	NA	NA	NA	NA
WP_000547760.1\|4948615_4949014_-	DUF350 domain-containing protein	NA	NA	NA	NA
WP_000012546.1\|4949031_4949691_-	YjfK family protein	NA	NA	NA	NA
WP_000511955.1\|4949741_4950440_-	PspA/IM30 family protein	NA	NA	NA	NA
WP_000220137.1\|4950458_4950860_-	DUF2170 family protein	NA	NA	NA	NA
WP_001293281.1\|4950986_4951718_-	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA
WP_000076318.1\|4951897_4954258_-	ribonuclease R	Q0GXV6	Lactococcus_phage	6.2e-67	33.1
WP_001177639.1\|4954296_4954722_-	nitric oxide-sensing transcriptional repressor NsrR	NA	NA	NA	NA
WP_000527955.1\|4954926_4956225_-	adenylosuccinate synthase	W5S5V7	Pithovirus	2.2e-66	35.9
WP_001089295.1\|4956328_4956526_-	DUF2065 domain-containing protein	NA	NA	NA	NA
WP_001232412.1\|4956607_4957612_-\|protease	protease modulator HflC	NA	NA	NA	NA
WP_000312488.1\|4957614_4958874_-\|protease	FtsH protease activity modulator HflK	A0A1L2CVV0	Pectobacterium_phage	3.6e-05	25.5
WP_000460353.1\|4958959_4960240_-	GTPase HflX	NA	NA	NA	NA
WP_001051883.1\|4960316_4960625_-	RNA chaperone Hfq	NA	NA	NA	NA
WP_001280349.1\|4960710_4961661_-\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_001122520.1\|4961653_4963501_-	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	5.8e-60	41.3
WP_000990321.1\|4963510_4964848_-	N-acetylmuramoyl-L-alanine amidase AmiB	A0A067ZJB6	Vibrio_phage	8.8e-18	31.0
WP_000981977.1\|4964866_4965328_-\|tRNA	tRNA (N6-adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase TsaE	NA	NA	NA	NA
WP_001307537.1\|4965299_4966847_-	bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase	NA	NA	NA	NA
WP_001294195.1\|4966845_4967985_+\|tRNA	tRNA epoxyqueuosine(34) reductase QueG	NA	NA	NA	NA
WP_010723271.1\|4967967_4968021_-	hypothetical protein	NA	NA	NA	NA
WP_001295188.1\|4968879_4969425_-	oligoribonuclease	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	2.2e-28	40.4
WP_000041970.1\|4969519_4970572_+	small ribosomal subunit biogenesis GTPase RsgA	NA	NA	NA	NA
WP_000934920.1\|4970668_4971637_+	phosphatidylserine decarboxylase	NA	NA	NA	NA
WP_001236850.1\|4971658_4974982_+	miniconductance mechanosensitive channel MscM	NA	NA	NA	NA
WP_001276180.1\|4975010_4975325_-	YjeO family protein	NA	NA	NA	NA
WP_000342867.1\|4975321_4975636_-	hypothetical protein	NA	NA	NA	NA
WP_001346081.1\|4975687_4977190_-	glutamate/gamma-aminobutyrate family transporter YjeM	NA	NA	NA	NA
WP_000004771.1\|4977408_4978386_-	elongation factor P--(R)-beta-lysine ligase	A0A2K9KZX5	Tupanvirus	6.8e-28	28.2
WP_001192991.1\|4978710_4980519_+	fumarate reductase (quinol) flavoprotein subunit	NA	NA	NA	NA
WP_000829498.1\|4980511_4981246_+	succinate dehydrogenase/fumarate reductase iron-sulfur subunit	NA	NA	NA	NA
WP_000208757.1\|4981256_4981652_+	fumarate reductase subunit FrdC	NA	NA	NA	NA
WP_001299198.1\|4981662_4982022_+	fumarate reductase subunit FrdD	NA	NA	NA	NA
WP_001299193.1\|4982084_4983218_+	BlaEC family class C beta-lactamase	NA	NA	NA	NA
WP_001238378.1\|4983306_4983840_+	lipocalin family protein	A0A1W6JNX6	Morganella_phage	2.7e-47	55.0
WP_000118482.1\|4983836_4984154_-	quaternary ammonium compound efflux SMR transporter SugE	NA	NA	NA	NA
WP_000239596.1\|4984335_4984482_-	lipoprotein toxin entericidin B	NA	NA	NA	NA
WP_000977757.1\|4984592_4984718_-	lipoprotein antitoxin entericidin A	NA	NA	NA	NA
WP_000257278.1\|4984769_4985336_-	elongation factor P	NA	NA	NA	NA
WP_000940530.1\|4985377_4986406_+	EF-P beta-lysylation protein EpmB	NA	NA	NA	NA
4986434:4986463	attL	NA	NA	NA	NA
WP_001008073.1\|4986795_4987665_+	hypothetical protein	NA	NA	NA	NA
WP_000558209.1\|4987868_4988222_-	DUF4156 domain-containing protein	NA	NA	NA	NA
WP_000729117.1\|4988359_4990006_-	chaperonin GroEL	A0A2I7SAK5	Vibrio_phage	5.3e-190	68.9
WP_001026276.1\|4990049_4990343_-	co-chaperone GroES	K4F9I2	Cronobacter_phage	9.2e-13	45.4
WP_000015837.1\|4990618_4991875_+	L-methionine/branched-chain amino acid transporter	NA	NA	NA	NA
WP_001267448.1\|4991890_4992367_-	membrane protein FxsA	NA	NA	NA	NA
WP_000069437.1\|4992703_4994140_+	aspartate ammonia-lyase	NA	NA	NA	NA
WP_000961959.1\|4994257_4995559_+	anaerobic C4-dicarboxylate transporter	NA	NA	NA	NA
WP_000883400.1\|4995674_4996013_+	divalent cation tolerance protein CutA	NA	NA	NA	NA
WP_000068905.1\|4995988_4997686_+	protein-disulfide reductase DsbD	NA	NA	NA	NA
WP_001188520.1\|4997722_4998298_+	transcriptional regulator	NA	NA	NA	NA
WP_001218841.1\|4998677_4999943_+\|integrase	integrase arm-type DNA-binding domain-containing protein	Q7M297	Enterobacteria_phage	2.7e-77	38.3
WP_000631719.1\|5001604_5001952_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	1.0e-42	72.0
WP_000603950.1\|5004273_5004822_-	Ail/Lom family outer membrane beta-barrel protein	Q9LA63	Enterobacterial_phage	1.3e-15	32.4
WP_085948178.1\|5006959_5008173_-\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	1.7e-169	99.7
WP_001254202.1\|5008266_5008557_+\|transposase	transposase	A0A1W6JP07	Morganella_phage	7.2e-42	99.0
5011924:5011953	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP028118

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP028117

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection