CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP028123	Escherichia coli O43 str. RM10042 plasmid pRM10042-3, complete sequence	0 crisprs	NA	0	0
NZ_CP028120	Escherichia coli O43 str. RM10042 plasmid pRM10042-1, complete sequence	0 crisprs	NA	0	0
NZ_CP028121	Escherichia coli O43 str. RM10042 plasmid pRM10042-2, complete sequence	0 crisprs	NA	0	8
NZ_CP028122	Escherichia coli O43 str. RM10042 chromosome, complete genome	5 crisprs	DinG,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	14	11

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 16397

Stx2-converting_phage(60.0%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_106889145.1\|1033_1330_-	flagellar biosynthesis protein FlgM	NA	NA	NA	NA
WP_000264906.1\|1357_1549_-	hypothetical protein	NA	NA	NA	NA
WP_000997723.1\|1558_1924_-	hypothetical protein	NA	NA	NA	NA
WP_108942198.1\|8540_9923_+	autoagglutinating adhesin Saa	A0A2C9CZB7	Yersinia_phage	1.8e-05	34.9
WP_000539307.1\|10189_10339_+	hypothetical protein	NA	NA	NA	NA
WP_050877130.1\|11153_13241_+	bifunctional siderophore receptor/adhesin Iha	A0A0P0I887	Acinetobacter_phage	3.1e-09	32.9
WP_047087018.1\|13501_13924_-	Exc2 family lipoprotein	NA	NA	NA	NA
WP_108942200.1\|14108_15623_-\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	2.8e-286	96.7
WP_000612591.1\|15672_16020_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.2e-61	100.0
WP_001171532.1\|16016_16397_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	2.7e-65	98.4

DBSCAN-SWA_2

21945 : 22398

Moraxella_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_108942202.1\|21945_22398_+	thermonuclease family protein	A0A0R6PHV6	Moraxella_phage	2.4e-12	31.1

DBSCAN-SWA_3

28402 : 28732

Macacine_betaherpesvirus(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001442266.1\|28402_28732_+\|transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	1.8e-28	55.6

DBSCAN-SWA_4

36251 : 38846

Stx2-converting_phage(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001442267.1\|36251_36926_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	6.2e-12	30.8
WP_000631723.1\|36922_37270_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	7.8e-43	72.0
WP_001066416.1\|37289_38846_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	9.8e-162	56.7

DBSCAN-SWA_5

59772 : 63307

Stx2-converting_phage(75.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_108942208.1\|59772_60234_-	thermonuclease family protein	A0A0R6PHV6	Moraxella_phage	8.0e-19	35.1
WP_108942200.1\|61018_62533_-\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	2.8e-286	96.7
WP_000612591.1\|62582_62930_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.2e-61	100.0
WP_001171532.1\|62926_63307_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	2.7e-65	98.4

DBSCAN-SWA_6

72676 : 80481

Cronobacter_phage(25.0%)

integrase

attL 66290:66303|attR 82359:82372

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
66290:66303	attL	NA	NA	NA	NA
WP_000086114.1\|72676_73360_-	DNA methylase	A0A2I7RE86	Vibrio_phage	5.1e-30	37.4
WP_077630271.1\|73745_74648_-	DUF1281 domain-containing protein	NA	NA	NA	NA
WP_000618108.1\|75066_75315_+	DinI-like family protein	Q2A098	Sodalis_phage	4.1e-14	46.7
WP_000109074.1\|75311_75749_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	3.7e-26	48.4
WP_001365565.1\|75748_76741_+	translesion error-prone DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	8.0e-101	59.5
WP_001365560.1\|76770_77019_+	DUF4113 domain-containing protein	F1C5A5	Cronobacter_phage	1.5e-19	59.0
WP_000340836.1\|77023_77416_-	hypothetical protein	NA	NA	NA	NA
WP_001103695.1\|77420_78392_-	hypothetical protein	A0A222YXF2	Escherichia_phage	1.3e-66	42.9
WP_000633912.1\|78620_79265_+	AAA family ATPase	A0A222YXS3	Escherichia_phage	1.9e-39	43.5
WP_000239527.1\|79258_79534_+	hypothetical protein	NA	NA	NA	NA
WP_000016958.1\|79671_80481_-\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	1.2e-54	97.3
82359:82372	attR	NA	NA	NA	NA

DBSCAN-SWA_7

85593 : 86571

Salmonella_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011310114.1\|85593_86571_+	RepB family plasmid replication initiator protein	J9Q7H0	Salmonella_phage	5.5e-102	64.5

DBSCAN-SWA_8

106671 : 109061

Stx2-converting_phage(66.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_040118371.1\|106671_108264_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.6e-175	62.0
WP_000624677.1\|108294_108645_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	1.8e-39	66.4
WP_000422680.1\|108641_109061_-	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	6.1e-42	87.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP028122

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP028122_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028122_1

561090-561186

Orphan

Consensus_repeat	Method
GCTTGACGCGTCTTATCAGGCCTACAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP028122_1

>merge|NZ_CP028122|1|561090-561186|CRISPRCasFinder
GCTTGACGCGTCTTATCAGGCCTACAACCGGTGCCGCATCCGGCAATTGGTGCACAATGCCTGATGCGATGCTTGACGCATCTTATCAGGCCTACAA

>NZ_CP028122|1|1|561090-561186|CRISPRCasFinder
GCTTGACGCGTCTTATCAGGCCTACAA	CCGGTGCCGCATCCGGCAATTGGTGCACAATGCCTGATGCGAT
GCTTGACGCATCTTATCAGGCCTACAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028122.1\|WP_000855388.1\|560162_561056_+\|carbamate-kinase	unknown	unknown	gnl\|CDD\|181831
NZ_CP028122.1\|WP_001297445.1\|559350_560166_+\|DUF2877-domain-containing-protein	unknown	unknown	gnl\|CDD\|378658
NZ_CP028122.1\|WP_000729154.1\|566598_567465_-\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	unknown	unknown	gnl\|CDD\|236760
NZ_CP028122.1\|WP_001301144.1\|553780_555016_-\|allantoate-deiminase	unknown	unknown	gnl\|CDD\|274471
NZ_CP028122.1\|WP_001298987.1\|550387_551689_+\|uracil/xanthine-transporter	unknown	unknown	gnl\|CDD\|183124
NZ_CP028122.1\|WP_001295318.1\|562314_562824_-\|5-(carboxyamino)imidazole-ribonucleotide-mutase	unknown	unknown	gnl\|CDD\|223119
NZ_CP028122.1\|WP_000912345.1\|564334_565720_+\|cysteine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234705
NZ_CP028122.1\|WP_000256002.1\|563666_564161_-\|peptidylprolyl-isomerase-B	unknown	unknown	gnl\|CDD\|182734
NZ_CP028122.1\|WP_000540946.1\|552984_553770_-\|(S)-ureidoglycine-aminohydrolase	unknown	unknown	gnl\|CDD\|225796
NZ_CP028122.1\|WP_000988364.1\|568707_569400_+\|type-1-fimbria-chaperone-FimC	unknown	unknown	gnl\|CDD\|185117
NZ_CP028122.1\|WP_001143552.1\|565755_566277_-\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|224899
NZ_CP028122.1\|WP_000212252.1\|562941_563664_-\|UDP-2,3-diacylglucosamine-diphosphatase	unknown	unknown	gnl\|CDD\|235420
NZ_CP028122.1\|WP_000706356.1\|551710_552856_+\|glycerate-3-kinase	unknown	unknown	gnl\|CDD\|182152
NZ_CP028122.1\|WP_021526411.1\|548969_550331_+\|allantoinase-AllB	unknown	unknown	gnl\|CDD\|169193
NZ_CP028122.1\|WP_000190288.1\|566384_566597_-\|ribosome-associated-protein-YbcJ	unknown	unknown	gnl\|CDD\|183166
NZ_CP028122.1\|WP_000495400.1\|558080_559340_+\|DUF1116-domain-containing-protein	unknown	unknown	gnl\|CDD\|377673
NZ_CP028122.1\|WP_000776555.1\|567945_568488_+\|type-1-fimbrial-protein-subunit-FimA	unknown	unknown	gnl\|CDD\|237920
NZ_CP028122.1\|WP_108942258.1\|556403_558071_+\|acyl-CoA-synthetase-FdrA	unknown	unknown	gnl\|CDD\|180395
NZ_CP028122.1\|WP_000703909.1\|555037_556087_-\|ureidoglycolate-dehydrogenase	unknown	unknown	gnl\|CDD\|184985
NZ_CP028122.1\|WP_000815522.1\|561250_562318_-\|5-(carboxyamino)imidazole-ribonucleotide-synthase	unknown	unknown	gnl\|CDD\|235674

Protein	Function_ID	Function_description	E-value
NZ_CP028122.1\|WP_000855388.1\|560162_561056_+\|carbamate-kinase	gnl\|CDD\|181831	PRK09411, PRK09411, carbamate kinase; Reviewed.	0
NZ_CP028122.1\|WP_001297445.1\|559350_560166_+\|DUF2877-domain-containing-protein	gnl\|CDD\|378658	pfam11392, DUF2877, Protein of unknown function (DUF2877). This bacterial family of proteins are putative carboxylase proteins however this cannot be confirmed.	2.68465e-37
NZ_CP028122.1\|WP_000729154.1\|566598_567465_-\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	gnl\|CDD\|236760	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD.	0
NZ_CP028122.1\|WP_001301144.1\|553780_555016_-\|allantoate-deiminase	gnl\|CDD\|274471	TIGR03176, AllC, allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea. [Central intermediary metabolism, Nitrogen metabolism].	0
NZ_CP028122.1\|WP_001298987.1\|550387_551689_+\|uracil/xanthine-transporter	gnl\|CDD\|183124	PRK11412, PRK11412, uracil/xanthine transporter.	0
NZ_CP028122.1\|WP_001295318.1\|562314_562824_-\|5-(carboxyamino)imidazole-ribonucleotide-mutase	gnl\|CDD\|223119	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism].	1.14024e-91
NZ_CP028122.1\|WP_000912345.1\|564334_565720_+\|cysteine--tRNA-ligase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
NZ_CP028122.1\|WP_000256002.1\|563666_564161_-\|peptidylprolyl-isomerase-B	gnl\|CDD\|182734	PRK10791, PRK10791, peptidylprolyl isomerase B.	2.40187e-121
NZ_CP028122.1\|WP_000540946.1\|552984_553770_-\|(S)-ureidoglycine-aminohydrolase	gnl\|CDD\|225796	COG3257, GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only].	4.36926e-152
NZ_CP028122.1\|WP_000988364.1\|568707_569400_+\|type-1-fimbria-chaperone-FimC	gnl\|CDD\|185117	PRK15195, PRK15195, molecular chaperone FimC.	4.4332e-149
NZ_CP028122.1\|WP_001143552.1\|565755_566277_-\|metal-dependent-hydrolase	gnl\|CDD\|224899	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only].	1.06651e-30
NZ_CP028122.1\|WP_000212252.1\|562941_563664_-\|UDP-2,3-diacylglucosamine-diphosphatase	gnl\|CDD\|235420	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional.	1.37025e-165
NZ_CP028122.1\|WP_000706356.1\|551710_552856_+\|glycerate-3-kinase	gnl\|CDD\|182152	PRK09932, PRK09932, glycerate 3-kinase.	0
NZ_CP028122.1\|WP_021526411.1\|548969_550331_+\|allantoinase-AllB	gnl\|CDD\|169193	PRK08044, PRK08044, allantoinase AllB.	0
NZ_CP028122.1\|WP_000190288.1\|566384_566597_-\|ribosome-associated-protein-YbcJ	gnl\|CDD\|183166	PRK11507, PRK11507, ribosome-associated protein YbcJ.	1.38756e-42
NZ_CP028122.1\|WP_000495400.1\|558080_559340_+\|DUF1116-domain-containing-protein	gnl\|CDD\|377673	pfam06545, DUF1116, Protein of unknown function (DUF1116). This family contains hypothetical bacterial proteins of unknown function.	1.67788e-130
NZ_CP028122.1\|WP_000776555.1\|567945_568488_+\|type-1-fimbrial-protein-subunit-FimA	gnl\|CDD\|237920	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA.	9.67411e-92
NZ_CP028122.1\|WP_108942258.1\|556403_558071_+\|acyl-CoA-synthetase-FdrA	gnl\|CDD\|180395	PRK06091, PRK06091, membrane protein FdrA; Validated.	0
NZ_CP028122.1\|WP_000703909.1\|555037_556087_-\|ureidoglycolate-dehydrogenase	gnl\|CDD\|184985	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional.	0
NZ_CP028122.1\|WP_000815522.1\|561250_562318_-\|5-(carboxyamino)imidazole-ribonucleotide-synthase	gnl\|CDD\|235674	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed.	1.21739e-179

>NZ_CP028122.1|WP_000855388.1|560162_561056_+|carbamate-kinase
MKTLVVALGGNALLQRGEALTAENQYRNIASAVPALARLARSYRLAIVHGNGPQVGLLALQNLAWKEVEPYPLDVLVAESQGMIGYMLAQSLSAQPQMPPVTTVLTRIEVSPDDPAFLQPEKFIGPVYQPEEQEALEAAYGWQMKRDGKYLRRVVASPQPRKILDSEAIELLLKEGHVVICSGGGGVPVTEDGAGSEAVIDKDLAAALLAEQINADGLVILTDADAVYENWGTPQQRAIRHATPDELAPFAKADGSMGPKVTAVSGYVRSRGKPAWIGALSRIEETLAGEAGTCISL
>NZ_CP028122.1|WP_001297445.1|559350_560166_+|DUF2877-domain-containing-protein
MTIIHPLLASRSAPNYRQSWRLAGVWRRAINLMTESGELLTLHRQGSGFGPGGWVLRRAQFDALCGGLCGNERPQVVAQGIRLGRFTVKQPQRYCLLRITPPAHPQPLAAAWMQRAEETGLFGPLALAASDPLTAELRQFRHCFQAALNGVKTDWRHWLGKGPGLTPSHDDTLSGMLLAAWYYGALDARSGRQFFACSDNLQLVTTAVSVSYLRYAAQGYFASPLLHFVHALSCPKRTAVAIDSLLALGHTSGADTLLGFWLGQQLLQGKP
>NZ_CP028122.1|WP_000495400.1|558080_559340_+|DUF1116-domain-containing-protein
MFTSVAQANAAVIEQIRRARPHWLDVQPASSLISELNPGKTLLHAGPPMRWQEMTGPMKGACVGACLFEGWAKDEAQALAILEQGEVNFIPCHHVNAVGPMGGITSASMPMLVVENVTDGNRAYCNLNEGIGKVMRFGAYGEDVLTRHRWMRDVLMPVLSAALGRMEHGIDLTAMMAQGITMGDEFHQRNIASSALLMRALAPQIARLDHDKQHIAEVMDFLSVTDQFFLNLAMAYCKAAMDAGAMIRAGSIVTAMTRNGNMFGIRVSGLGERWFTAPVNTPQGLFFTGFSQEQANPDMGDSAITETFGIGGAAMIAAPGVTRFVGAGGMEAARAVSEEMAEIYLERNMQLQIPGWDFQGACLGLDIRRVVETGITPLINTGIAHKEAGIGQIGAGTVRAPLACFEQALEALAESMGIG
>NZ_CP028122.1|WP_108942258.1|556403_558071_+|acyl-CoA-synthetase-FdrA
MIHAFIKKGCFQDSVSLMIISRKLSESENVDDVSVMMGTPANKALLDTTGFWHDDFNNATPNDICVAIRSEAADAGIAQAIMQQLEEALKQLAQGSGSSQSLTQVRRWDSACQKLPDASLALISVAGEYAAELANQALDRNLNVMMFSDNVTLEDEIQLKTRAREKGLLVMGPDCGTSMIAATPLAFANVMPEGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLAFVSKPPAEAVRLKIVNAMKATGKPTVALFLGYTPAVARDENVWFASSLDEAARLACLLSRVTARRNAIAPVSSGFICGLYTGGTLAAEAAGLLAGHLGVEADDTHHHGMMLDADGHQIIDLGDDFYTVGRPHPMIDPALRNQLIADLGAKPQVRVLLLDVVIGFGATADPAASLVSAWQKACAARSDNQPLYAIATVTGTERDPQCRSQQIATLEDAGIAVVSSLPDATLLAAALIRPLSPATQQHTPSLMENVAVINIGLRSFALELQSASKSVVHYQWSPVAGGNKKLARLLERLQ
>NZ_CP028122.1|WP_000703909.1|555037_556087_-|ureidoglycolate-dehydrogenase
MKISRETLHQLIENKLCQAGLKREHAATVAEVLVYADARGIHSHGAVRVEYYAERISKGGTNREPEFRLEETGPCSAILHADNAAGQVAAKMGMEHAIKTAQQNGVAVVGISRMGHSGAISYFVQQAARAGLIGISMCQSDPMVVPFGGAEIYYGTNPLAFAAPGEGDEILTFDMATTVQAWGKVLDARSRNMSIPDTWAVDKNGAPTTDPFAVHALLPAAGPKGYGLMMMIDVLSGVLLGLPFGRQVSSMYDDLHAGRNLGQLHIVINPNFFFSSKLFRQHLSQTMRELNAITPAPGFNQVYYPGQDQDIKQRKAAVEGIEIVDDIYQYLISDALYNTSYETKNPFAQ
>NZ_CP028122.1|WP_001301144.1|553780_555016_-|allantoate-deiminase
MITHFRQAIEETLPWLSSFGADPTGGMTRLLYSPEWLETQQQFKKRMAASGLETRFDEVGNLYGRLSGTEYPQEVVLSGSHIDTVVNGGNLDGQFGALAAWLAIDWLKTQYGAPLRTVEVVAMAEEEGSRFPYVFWGSKNIFGLANPDDVRNICDAKGNSFVDAMKACGFTLPNAPLTPRQDIKAFVELHIEQGCVLESNGQSIGVVNAIVGQRRYTVTLNGESNHAGTTPMGYRRDTVYAFSRICHQSVEKAKRMGDPLVLTFGKVEPRPNTVNVVPGKTTFTIDCRHTDAAVLRDFTQQLENDMRAICDEMDIGIDIDLWMDEEPVPMNKELVATLTELCEREKLNYRVMHSGAGHDAQIFAPRVPTCMIFIPSINGISHNPAERTNITDLAEGVKTLALMLYQLAWQK
>NZ_CP028122.1|WP_000540946.1|552984_553770_-|(S)-ureidoglycine-aminohydrolase
MGYLNNVTGYRDDLLANRAIVKHGNFALLTPDGLVKNIIPGFENCDATILSTPKLGASFVDYLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKAEGKTFALSEGGYLYCPPGSLMTFVNAQAEDSQIFLYKRRYVPVEGHAPWLVSGNASELERIHYEGMDDVILLDFLPKELGFDMNMHILSFAPGASHGYIETHVQEHGAYILSGQGVYNLDNNWIPVKKGDYIFMGAYSLQAGYGVGRGEAFSYIYSKDCNRDVEI
>NZ_CP028122.1|WP_000706356.1|551710_552856_+|glycerate-3-kinase
MKIVIAPDSFKESLSAEKCCQAIKAGFSTLFPDANYICLPIADGGEGTVDAMVAATGGNIVTLEVCGPMGEKVNAFYGLTGDGKTAVIEMAAASGLMLVAPEKRNPLLASSFGTGELIRHALDNGIRHIILGIGGSATVDGGMGMAQALGVRFLDADGQVLVANGGNLARVASIEMDECDPRLANCHIEVACDVDNPLVGARGAAAVFGPQKGATPEMVEELEQGLQNYARVLQQQTEINVCQMAGGGAAGGMGIAAAVFLNADIKPGIEIVLRAVNLEQAVQGAALVITGEGRIDSQTAGGKAPLGVASVAKQFNVPVIGIAGVLGDGVEVVHQYGIDAVFSILPRLAPLAEVLASGETNLFNSARNIACAIKIGQGIKN
>NZ_CP028122.1|WP_001298987.1|550387_551689_+|uracil/xanthine-transporter
MFNFAVSRESLLSGFQWFFFIFCNTVVVPPTLLSAFQLPQSSLLTLTQYAFLATALACFAQAFCGHRRAIMEGPGGLWWGTILTITLGEASRGTPINDIATSLAVGIALSGVLTMLIGFSGLGHRLARLFTPSVMVLFMLMLGAQLTTIFFKGMLGLPFGIADPNFKIQLPPFALSVAVMCLVLGMIIFLPQRFARYGLLVGTITGWLLWYFCFPSSHSLSGELHWQWFPLGSGGALSPGIILTAVITGLVNISNTYGAIRGTDVFYPQQGAGNTRYRRSFVATGFMTLITVPLAVIPFSPFVSSIGLLTQTGDYTRRSFIYGSVICLLVALVPALTRLFCSIPLPVSSAVMLVSYLPLLFSALVFSQQITFTARNIYRLALPLFVGIFLMALPPVYLQDLPLTLRPLLSNGLLVGILLAVLMDNLIPWERIE
>NZ_CP028122.1|WP_021526411.1|548969_550331_+|allantoinase-AllB
MSFDLIIKNGTVILENEARVVDIAVKGGKIAAIGQDLGDAKEVMDASGLVVSPGMVDAHTHISEPGRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQLGGLVSYNIDRLHELDEVGVVGFKCFVATCGDRGIDNDFRDVNDWQFFKGAQKLGELGQPVLVHCENALICDALGEEAKREGRVTAHDYVASRPVFTEVEAIRRVLYLAKVVGCRLHVCHISSPEGVEEVTRARQEGQDVTCESCPHYFVLDTDQFEEIGTLAKCSPPIRDLENQKGMWEKLFNGEIDCLVSDHSPCPPEMKAGNIMEAWGGIAGLQNCMDVMFDEAVQKRGMSLPMFGKLMATNAADIFGLQQKGRIAPGKDADFVFIQPNSSYVLTNDDLEYRHKVSPYVGRTIGARITKTILRGDVIYDIEQGFPVAPKGQFILKHQQ
>NZ_CP028122.1|WP_000815522.1|561250_562318_-|5-(carboxyamino)imidazole-ribonucleotide-synthase
MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPAAVPFQQSVITAEIERWPETALTRELARHPAFVNRDVFPIIADRLTQKQLFDKLHLPTAPWQLLADRSEWPAVFDRLGELAIVKRRTGGYDGRGQWRLRADETEQLPAECYGECIVEQGINFSGEVSLVGARGFDGSTVFYPLTHNLHQDGILRTSVAFPQANAQQQAQAEEMLSAIMQELGYVGVMAMECFVTPQGLLINELAPRVHNSGHWTQNGASISQFELHLRAITDLPLPQPVVNNPSVMINLIGSDANYDWLKLPLVHLHWYDKEVRPGRKVGHLNLTDSDTSRLTATLEALIPLLPPEYASGVIWAQSKFG
>NZ_CP028122.1|WP_001295318.1|562314_562824_-|5-(carboxyamino)imidazole-ribonucleotide-mutase
MSSRNNPARVAIVMGSKSDWATMQFAAEIFEILNVPHHVEVVSAHRTPDKLFSFAESAEENGYQVIIAGAGGAAHLPGMIAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTLAIGKAGAANAALLAAQILATHDKELHQRLNDWRKAQTDEVLENPDPRGAA
>NZ_CP028122.1|WP_000212252.1|562941_563664_-|UDP-2,3-diacylglucosamine-diphosphatase
MATLFIADLHLCVEEPAITAGFLRFLAGEARKADALYILGDLFEAWIGDDDPNPLHRQMAAAIKAVSDSGVPCYFIHGNRDFLLGKRFARESGMTLLPEEKVLELYGRRVLIMHGDTLCTDDAGYQAFRAKVHKPWLQMLFLALPLFVRKRIAARMRANSKEANSSKSLAIMDVNQNAVVSAMEKHQVQWLIHGHTHRPAVHELIANQQPAFRVVLGAWHTEGSMVKVTADDVELIHFPF
>NZ_CP028122.1|WP_000256002.1|563666_564161_-|peptidylprolyl-isomerase-B
MVTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQKATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDVIIESVTVSE
>NZ_CP028122.1|WP_000912345.1|564334_565720_+|cysteine--tRNA-ligase
MLKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVALVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSGAQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLEDGPQGTTWRRK
>NZ_CP028122.1|WP_001143552.1|565755_566277_-|metal-dependent-hydrolase
MPTVITHAAVPLCIGLGLGSKVIPPRLLFAGIILAMLPDADVLSFKFGVAYGNVFGHRGFTHSLVFAFVVPLLCVLIGRRWFRAGLIRCWLFLTVSLLSHSLLDSVTTGGKGVGWLWPWSDERFFAPWQVIKVAPFALSRYTTPYGHQVIISELMWVWLPGMVLMGMLWWRRR
>NZ_CP028122.1|WP_000190288.1|566384_566597_-|ribosome-associated-protein-YbcJ
MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVVA
>NZ_CP028122.1|WP_000729154.1|566598_567465_-|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD
MAAKIIDGKTIAQQVRSEVAQKVQARIAAGLRAPGLAVVLVGSNPASQIYVASKRKACEEVGFVSRSYDLPETTSEAELLELIDALNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDVDGFHPYNVGRLCQRAPRLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPGDWIKEGAIVIDVGINRLENGKVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTLQACVEYHDPQDE
>NZ_CP028122.1|WP_000776555.1|567945_568488_+|type-1-fimbrial-protein-subunit-FimA
MKLRFISSALAAALFAATGSYAAVVDGGTIHFEGELVNAACSVNTDSADQVVTLGQYRTDIFNAVGNTSALIPFTIQLNDCDPVVAANAAVAFSGQADAINDNLLAIASSTNTTTATGVGIEILDNTSAILKPDGNSFSTNQNLIPGTNVLHFSARYKGTGTSASAGQANADATFIMRYE
>NZ_CP028122.1|WP_000988364.1|568707_569400_+|type-1-fimbria-chaperone-FimC
MMTKIKLLMLIIFYLIISASAHAAGGIALGATRIIYPADAKQTAVWIRNSHTNERFLVNSWIENSSGVKEKSFIITPPLFVSEPKSENTLRIIYTGPPLAADRESLFWMNVKTIPSVDKNALNGRNVLQLAILSRMKLFLRPIQLQELPAEAPDTLKFSRSGNYINVHNPSPFYVTLVNLQVGSQKLGNAMAAPRVNSQIPLPSGVQGKLKFQTVNDYGSVTPVREVNLN

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Crispr_ID: NZ_CP028122_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028122_2

3129408-3130290

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT

14 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP028122_2

>merge|NZ_CP028122|2|3129408-3130290|PILER-CR,CRISPRCasFinder,CRT
CGGTTTATCCCCGCTGACGCGGGGAACACAAAACCAAACTTCTCCATAAATTCCATAGCCGCGGTTTATCCCCGCTGGCGCGGGGAACACAACTGGATTCTGCTCTAATTATTACATCATCGCGGTTTATCCCCGCTGGCGCGGGGAACACGGAAACCGCCCCGGCGGTGGTTAGCTGTTTGCCGGTTTATCCCCGCTGGCGCGGGGAACACTCGGCCAGCGTCCAGGCTGGCACCCGATATTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGCCGACTGACCGCCGACGCTTTCGCGTTAACGGTTTATCCCCGCTGGCGCGGGGAACACCGTTTTTGCCGGGTTTATTTTAAAACCGGAGCCGGTTTATCCCCGCTGGCGCGGGGAACACGGAATATCGTTGCGCTAAAAGAGATTCTGGGCCGGTTTATCCCCGCTGGCGCGGGGAACACGTCGCCTGTTCAACTTTAAACGGCTCAAACCACGGTTTATCCCCGCTGGCGCGGGGAACACCCTGGTGGAGATTGACGCGAAATATGAGAAACCGGTTTATCCCCGCTGGCGCGGGGAACACATGAAACGCCGGACTAATCCACATGGCGTAGGCGGTTTATCCCCGCTGGCGCGGGGAACACATCCACATTTCCGCCGTTATGAATCGGTATTCCGGTTTATCCCCGCTGGCGCGGGGAACACCCCGTGCCAGTTTGCTGCGCTGCCGTCGTCGTCGGTTTATCCCCGCTGGCGCGGGGAACACCTGAAAAGTGGATTTTACACGCTGCCAAAATTCGGTTTATCCCCGCTGGCGCGGGGAACACGCTGAGGCTGTCAGGAGCCAGTGCGGCAGAGGCGGTTTATCCCCGCTGGCGCGGGCGCGGT

>NZ_CP028122|2|1|3129408-3130229|PILER-CR
CGGTTTATCCCCGCTGACGCGGGGAACAC	AAAACCAAACTTCTCCATAAATTCCATAGCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AACTGGATTCTGCTCTAATTATTACATCATCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGAAACCGCCCCGGCGGTGGTTAGCTGTTTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCGGCCAGCGTCCAGGCTGGCACCCGATATTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTGCCGACTGACCGCCGACGCTTTCGCGTTAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTTTTTGCCGGGTTTATTTTAAAACCGGAGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGAATATCGTTGCGCTAAAAGAGATTCTGGGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCGCCTGTTCAACTTTAAACGGCTCAAACCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCTGGTGGAGATTGACGCGAAATATGAGAAAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATGAAACGCCGGACTAATCCACATGGCGTAGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCCACATTTCCGCCGTTATGAATCGGTATTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCCGTGCCAGTTTGCTGCGCTGCCGTCGTCGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTGAAAAGTGGATTTTACACGCTGCCAAAATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP028122|2|2|3129408-3130290|CRISPRCasFinder
CGGTTTATCCCCGCTGACGCGGGGAACAC	AAAACCAAACTTCTCCATAAATTCCATAGCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AACTGGATTCTGCTCTAATTATTACATCATCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGAAACCGCCCCGGCGGTGGTTAGCTGTTTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCGGCCAGCGTCCAGGCTGGCACCCGATATTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTGCCGACTGACCGCCGACGCTTTCGCGTTAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTTTTTGCCGGGTTTATTTTAAAACCGGAGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGAATATCGTTGCGCTAAAAGAGATTCTGGGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCGCCTGTTCAACTTTAAACGGCTCAAACCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCTGGTGGAGATTGACGCGAAATATGAGAAAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATGAAACGCCGGACTAATCCACATGGCGTAGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCCACATTTCCGCCGTTATGAATCGGTATTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCCGTGCCAGTTTGCTGCGCTGCCGTCGTCGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTGAAAAGTGGATTTTACACGCTGCCAAAATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCTGAGGCTGTCAGGAGCCAGTGCGGCAGAGG
CGGTTTATCCCCGCTGGCGCGGGCGCGGT

>NZ_CP028122|2|1|3129408-3130290|CRT
CGGTTTATCCCCGCTGACGCGGGGAACAC	AAAACCAAACTTCTCCATAAATTCCATAGCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AACTGGATTCTGCTCTAATTATTACATCATCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGAAACCGCCCCGGCGGTGGTTAGCTGTTTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCGGCCAGCGTCCAGGCTGGCACCCGATATTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTGCCGACTGACCGCCGACGCTTTCGCGTTAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTTTTTGCCGGGTTTATTTTAAAACCGGAGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGAATATCGTTGCGCTAAAAGAGATTCTGGGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCGCCTGTTCAACTTTAAACGGCTCAAACCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCTGGTGGAGATTGACGCGAAATATGAGAAAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATGAAACGCCGGACTAATCCACATGGCGTAGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCCACATTTCCGCCGTTATGAATCGGTATTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCCGTGCCAGTTTGCTGCGCTGCCGTCGTCGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTGAAAAGTGGATTTTACACGCTGCCAAAATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCTGAGGCTGTCAGGAGCCAGTGCGGCAGAGG
CGGTTTATCCCCGCTGGCGCGGGCGCGGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028122.1\|WP_001084096.1\|3134610_3136173_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP028122.1\|WP_000206441.1\|3133010_3134066_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP028122.1\|WP_001219242.1\|3123008_3123488_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP028122.1\|WP_000372108.1\|3127128_3128037_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP028122.1\|WP_001246104.1\|3124721_3125045_-\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP028122.1\|WP_001173673.1\|3125094_3125700_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP028122.1\|WP_001295182.1\|3121220_3121982_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP028122.1\|WP_108942459.1\|3121962_3123012_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP028122.1\|WP_000039843.1\|3139580_3140315_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP028122.1\|WP_000063179.1\|3130411_3130705_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP028122.1\|WP_000085060.1\|3132253_3133000_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP028122.1\|WP_000246138.1\|3123487_3124198_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP028122.1\|WP_000144875.1\|3130704_3131625_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP028122.1\|WP_000029329.1\|3134077_3134614_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193
NZ_CP028122.1\|WP_021542206.1\|3128288_3129326_+\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP028122.1\|WP_001233945.1\|3136270_3138970_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP028122.1\|WP_001090346.1\|3125699_3127127_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP028122.1\|WP_000281455.1\|3131621_3132272_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_CP028122.1\|WP_000517476.1\|3124216_3124528_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP028122.1\|WP_000956458.1\|3139163_3139316_-\|type-I-toxin-antitoxin-system-Hok-family-toxin	unknown	unknown	gnl\|CDD\|366840

Protein	Function_ID	Function_description	E-value
NZ_CP028122.1\|WP_001084096.1\|3134610_3136173_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP028122.1\|WP_000206441.1\|3133010_3134066_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	1.03601e-154
NZ_CP028122.1\|WP_001219242.1\|3123008_3123488_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.56248e-104
NZ_CP028122.1\|WP_000372108.1\|3127128_3128037_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP028122.1\|WP_001246104.1\|3124721_3125045_-\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.22003e-52
NZ_CP028122.1\|WP_001173673.1\|3125094_3125700_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	7.34447e-148
NZ_CP028122.1\|WP_001295182.1\|3121220_3121982_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.92279e-150
NZ_CP028122.1\|WP_108942459.1\|3121962_3123012_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP028122.1\|WP_000039843.1\|3139580_3140315_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	7.99311e-138
NZ_CP028122.1\|WP_000063179.1\|3130411_3130705_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	3.5781e-65
NZ_CP028122.1\|WP_000085060.1\|3132253_3133000_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.60665e-47
NZ_CP028122.1\|WP_000246138.1\|3123487_3124198_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	3.26939e-121
NZ_CP028122.1\|WP_000144875.1\|3130704_3131625_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.70125e-157
NZ_CP028122.1\|WP_000029329.1\|3134077_3134614_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	1.12087e-29
NZ_CP028122.1\|WP_021542206.1\|3128288_3129326_+\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP028122.1\|WP_001233945.1\|3136270_3138970_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	3.00965e-179
NZ_CP028122.1\|WP_001090346.1\|3125699_3127127_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP028122.1\|WP_000281455.1\|3131621_3132272_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.33324e-91
NZ_CP028122.1\|WP_000517476.1\|3124216_3124528_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	5.55235e-62
NZ_CP028122.1\|WP_000956458.1\|3139163_3139316_-\|type-I-toxin-antitoxin-system-Hok-family-toxin	gnl\|CDD\|366840	pfam01848, HOK_GEF, Hok/gef family.	8.32243e-12

>NZ_CP028122.1|WP_021542206.1|3128288_3129326_+|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKSWHNVTGSTMIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEIFDKAGIAVLSVEATNWNLGNKDGYQQRAKTPAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
>NZ_CP028122.1|WP_000372108.1|3127128_3128037_-|sulfate-adenylyltransferase-subunit-CysD
MDQIRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>NZ_CP028122.1|WP_001090346.1|3125699_3127127_-|sulfate-adenylyltransferase-subunit-CysN
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEETFTRIREDYLTFAEQLPGNLDIRFVPLSALEGDNVASQSESMPWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARIDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPVSQATAAPSEFSAFELELNALVRRHFPHWGARDLLGDK
>NZ_CP028122.1|WP_001173673.1|3125094_3125700_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>NZ_CP028122.1|WP_001246104.1|3124721_3125045_-|DUF3561-family-protein
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>NZ_CP028122.1|WP_000517476.1|3124216_3124528_-|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>NZ_CP028122.1|WP_000246138.1|3123487_3124198_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>NZ_CP028122.1|WP_001219242.1|3123008_3123488_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>NZ_CP028122.1|WP_108942459.1|3121962_3123012_-|tRNA-pseudouridine(13)-synthase-TruD
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQREGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGALRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>NZ_CP028122.1|WP_001295182.1|3121220_3121982_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW
>NZ_CP028122.1|WP_000063179.1|3130411_3130705_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAIWLLEVRAGVYVGDTSKRIREMIWQQITQLAGCGNVVMAWATNTESGFEFQTWGKNRRIPVDLDGLRLVSFLPVDNQ
>NZ_CP028122.1|WP_000144875.1|3130704_3131625_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLSPIPLKDRTSMIFLQYGQIDVLDGAFVLINKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLAATVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALTEDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRQTYALLAKQYGVKWNGRKYDPKDWEKGDVVNRCISAATSCLYGISEAAVLAAGYAPAIGFIHSGKPLSFVYDIADIIKFDSVVPKAFEIAARQPAEPDKEVRLACRDIFRSTKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPETLGDSGHRGRG
>NZ_CP028122.1|WP_000281455.1|3131621_3132272_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTGQLSPAQLLHLVDRGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQERPAESETFTIECRPFVSELRTGQSLCFNLRANPTICKAGKRHDLLMEAKRQVKGQAEGRDIWLHQQQAALDWLAAQGERSGFTLLDTSVDAYRQQQLRRENTRQLIQFSSVDYTGMLTVTDPGLFLQRLSQGYGKSRAFGCGLMLIKPGAEA
>NZ_CP028122.1|WP_000085060.1|3132253_3133000_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLIFQLHGPMASWGVDAPGEVRHTHELPSRSALLGLLAAGVGIRRDDTERLNAFNRHYSLVVCASRNPRWARDYHTVQMPKEVRKARYFSRREELSAPELLSAIISRRDYYTDAWWMVAVATTPDAPYSLEQLQDGLRHPVFPLYLGRKSHPLALPLAPLLLEGNASDTLRNAYQQYQDHFRKLKVSLPKLQDECWWEGEHDGLVASKILRRRDVPLNRQQWLFGERTVNQGPWLSKEEPCTSQE
>NZ_CP028122.1|WP_000206441.1|3133010_3134066_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRVSSQSLKRAWRTSALFEQALAGHIGIRSGRIAREAATILIEKGIEEKKAIEWAAKIADYLGKAKNDKKPKDPLTNAETEQLVHISPAEFDAVKALAHQLAEEKRAPKEEDLALLRKDRMAVDIAMFGRMLANKPEFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASEDAGAGHLGETGFGSALFYTYICIDKDLLVENLGGDEALANQTIRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTRQLEVAVQRITTLRENMNTVYEQKTDYASFDVMNKQGSMKDVLDFICA
>NZ_CP028122.1|WP_000029329.1|3134077_3134614_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVKEEHKATLRKWHEELQEKRGERASLRRSTTVNDVCLTDGFRLFLKNRQIKWQDEPEWRITALALIAAVSANVKAIDERQPFAAQLAAVMSKGRFTRLSAVKTPDELLRQLRRAVRLLNGSVNLDSLAEGVFRWCQESDDLLNHHRRQQRPTEFIRIRWALEYYQAGDADNEQNQ
>NZ_CP028122.1|WP_001084096.1|3134610_3136173_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNSFSLLTTPWLPVRFKDGTTGKLAPVDLADENVVDIAAPRADLQGAAWQFLLGLLQTSFAPKNHGRWDDIWQDGLEAEKLREALLSLEHAFQFGADSPSFMQDFEALKGDKVQVASLLPEIPGAQTTKFNKDHFIKRGVTEHVCPHCSALALFSLQLNAPSGGKGYRTGLRGGGPMTTLIELQEYQGNQQTPLWRKLWPNVMPQDEADLPLPKKFDDLVFPWLGPTRTSELAGAVVTHDQVNKLQAYWGMPRRIRIDFNTTTVGNCDICGEQSDALLSLMTTKNYGANYAMWQHPLTPYRIPLKEGGEFYSVKPQPGGLIWRDWLGLIETGKSENNTELPALVVKLFNASSLKQAKVGLWGFGYDFDNMKARCWYEHHFPLLLKKKEGQIPKLRLAAQTASRILSLLRSALKEAWFSDPKGARGDFSFVDIDFWNKTQHRFLRLVRQIEEGQDADELLGKWQKEIWLFARQDFDERVFTNPYEPVDLKRVMTARKKYFTTSAEKQSAKAAREKKQEAAE
>NZ_CP028122.1|WP_001233945.1|3136270_3138970_-|CRISPR-associated-helicase/endonuclease-Cas3
MRKYPLSLLKDKNIVTFFDFWGKTRRGEKDGGDDYHLLCWHSLDVAAMGYLMVKRNCFGLADYFRQLGISDKEQAAQFFAWLLCWHDIGKFARSFQQLYLPPELKIQEGARKNYEKISHSTLGYWLWNHYLSECQELLPSSSLSPRKLRRVIEMWMPVTTGHHGRPPDRMDELDNFLPEDKAAARDFLLEIKPLFPLIEIPAFWDDDEGIELIKHLSWYISATVVLADWTGSSTRFFPRVAHPMDIKGYWQKTLIQAQNALTVFPLKAKVAPFNGINTLFPFIENPTPLQQKVLDLDISQQGPQLFILEDVTGAGKTEAALILAHRLIAAGKAQGLFFGLPTMATANAMYDRLVKTWLAFYSPESRPSLVLAHSARTLMDRFNESLWSGDLVGSEEPDEQTFSQGCAAWFADSNKKALLAEIGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAYMSCILEGLIERQARGGNSVILLSATLSQQQRDKLVAAFARGTEGLQEAPFLEKDDYPWLTHVTKSDVNSHRVATRKDVERSVSVGWLHSEQECIARIESAVSQGKCIAWIRNSVDDAIKVHRQLLARGVIPASSLSLFHSRFAFSDRQRIETETLARFGKYCSLQRASQVIVCTQVIEQSVDIDLDEMISDLAPVDLLIQRAGRLQRHIRDINGQLKRDGKDERSPPELLILAPVWDDSPGDEWFGSAMRNSAFVYPDHGRIWLTQRVLREQGAIQMPHAARLLIESVYGEDVVMPEGFARSEQEQVGKYYCDRAMAKKFVLNFRPGYAANINDYLPEKLSTRLAEESVSLWLATCIDGVVKPYATGAHAWEMSVVRVRRSWWKKHRDEFSLLEGEAFRLWCIEQRQDPEMANVILVNDDESCGYSATEGLIGKVG
>NZ_CP028122.1|WP_000956458.1|3139163_3139316_-|type-I-toxin-antitoxin-system-Hok-family-toxin
MLTKYALVAIIVLCCTVLGFTLMVGDSLCELSIRERGMEFKAVLAYESKK
>NZ_CP028122.1|WP_000039843.1|3139580_3140315_-|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIHPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMSEEETRFFGLKRECGLHEG

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Crispr_ID: NZ_CP028122_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028122_3

3156015-3156409

Unclear

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	PILER-CR

6 spacers

The CRISPR arrays of NZ_CP028122_3

>merge|NZ_CP028122|3|3156015-3156409|CRISPRCasFinder,CRT,PILER-CR
TGGTTTATCCCCGCTGGCGCGGGGAACTCGCCTGACATTGCAGACGTTACAAATTGAGAGGCGGTTTATCCCCGCTGGCGCGGGGAACTCTCCGTCCACCCTGATAGCCGCCCTTGTGATCCCGGTTTATCCCCGCTGGCGCGGGGAACTCTACTGCTCCGCTGGCGTTTCTCCCTCGCCCAGCGGTTTATCCCCGCTGGCGCGGGGAACTCGCGGGCGTTAACGCGGTGATACTGTTTGACGGCGGTTTATCCCCGCTGGCGCGGGGAACTCACCGAGCGCCGCTGGGAGGCGTATCTCACGTTCGGTTTATCCCCGCTGGCGCGGGGAACTCGGTGAATACTGCGGCAGGCGCTGCGGGAATTGCGGTTTATCCCCGCTGGCGCGGGGAACTC

>NZ_CP028122|3|3|3156015-3156409|CRISPRCasFinder
TGGTTTATCCCCGCTGGCGCGGGGAACTC	GCCTGACATTGCAGACGTTACAAATTGAGAGG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TCCGTCCACCCTGATAGCCGCCCTTGTGATCC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TACTGCTCCGCTGGCGTTTCTCCCTCGCCCAG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GCGGGCGTTAACGCGGTGATACTGTTTGACGG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	ACCGAGCGCCGCTGGGAGGCGTATCTCACGTT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GGTGAATACTGCGGCAGGCGCTGCGGGAATTG
CGGTTTATCCCCGCTGGCGCGGGGAACTC

>NZ_CP028122|3|2|3156015-3156409|CRT
TGGTTTATCCCCGCTGGCGCGGGGAACTC	GCCTGACATTGCAGACGTTACAAATTGAGAGG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TCCGTCCACCCTGATAGCCGCCCTTGTGATCC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TACTGCTCCGCTGGCGTTTCTCCCTCGCCCAG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GCGGGCGTTAACGCGGTGATACTGTTTGACGG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	ACCGAGCGCCGCTGGGAGGCGTATCTCACGTT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GGTGAATACTGCGGCAGGCGCTGCGGGAATTG
CGGTTTATCCCCGCTGGCGCGGGGAACTC

>NZ_CP028122|3|2|3156016-3156409|PILER-CR
GGTTTATCCCCGCTGGCGCGGGGAACTCG	CCTGACATTGCAGACGTTACAAATTGAGAGGC
GGTTTATCCCCGCTGGCGCGGGGAACTCT	CCGTCCACCCTGATAGCCGCCCTTGTGATCCC
GGTTTATCCCCGCTGGCGCGGGGAACTCT	ACTGCTCCGCTGGCGTTTCTCCCTCGCCCAGC
GGTTTATCCCCGCTGGCGCGGGGAACTCG	CGGGCGTTAACGCGGTGATACTGTTTGACGGC
GGTTTATCCCCGCTGGCGCGGGGAACTCA	CCGAGCGCCGCTGGGAGGCGTATCTCACGTTC
GGTTTATCCCCGCTGGCGCGGGGAACTCG	GTGAATACTGCGGCAGGCGCTGCGGGAATTGC
GGTTTATCCCCGCTGGCGCGGGGAACTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028122.1\|WP_000226815.1\|3163418_3165653_-\|GTP-pyrophosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_CP028122.1\|WP_001199973.1\|3156748_3157420_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP028122.1\|WP_001347765.1\|3144658_3145930_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182194
NZ_CP028122.1\|WP_000021321.1\|3151489_3152275_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187605
NZ_CP028122.1\|WP_108942461.1\|3146197_3146773_+\|glycerol-3-phosphate-responsive-antiterminator	unknown	unknown	gnl\|CDD\|224865
NZ_CP028122.1\|WP_001071648.1\|3161895_3162687_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP028122.1\|WP_108942465.1\|3153897_3155376_+\|sugar-kinase	unknown	unknown	gnl\|CDD\|212662
NZ_CP028122.1\|WP_000581937.1\|3163092_3163341_-\|type-II-toxin-antitoxin-system-antitoxin-MazE	unknown	unknown	gnl\|CDD\|182082
NZ_CP028122.1\|WP_001268452.1\|3157712_3158585_+\|YgcG-family-protein	unknown	unknown	gnl\|CDD\|224429
NZ_CP028122.1\|WP_000059287.1\|3149965_3151420_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NZ_CP028122.1\|WP_021542211.1\|3165700_3167002_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NZ_CP028122.1\|WP_000254745.1\|3162757_3163093_-\|endoribonuclease-MazF	unknown	unknown	gnl\|CDD\|182138
NZ_CP028122.1\|WP_001288227.1\|3157558_3157699_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028122.1\|WP_001442280.1\|3146920_3147781_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936
NZ_CP028122.1\|WP_001355757.1\|3147777_3148557_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997
NZ_CP028122.1\|WP_000210878.1\|3160030_3161668_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP028122.1\|WP_108942463.1\|3152593_3153871_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
NZ_CP028122.1\|WP_000147666.1\|3148534_3149944_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NZ_CP028122.1\|WP_000109367.1\|3145920_3146181_+\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|225289
NZ_CP028122.1\|WP_000036723.1\|3158644_3159943_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617

Protein	Function_ID	Function_description	E-value
NZ_CP028122.1\|WP_000226815.1\|3163418_3165653_-\|GTP-pyrophosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_CP028122.1\|WP_001199973.1\|3156748_3157420_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.98248e-155
NZ_CP028122.1\|WP_001347765.1\|3144658_3145930_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|182194	PRK10015, PRK10015, oxidoreductase; Provisional.	1.51231e-125
NZ_CP028122.1\|WP_000021321.1\|3151489_3152275_-\|SDR-family-oxidoreductase	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	5.84461e-140
NZ_CP028122.1\|WP_108942461.1\|3146197_3146773_+\|glycerol-3-phosphate-responsive-antiterminator	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	3.96531e-87
NZ_CP028122.1\|WP_001071648.1\|3161895_3162687_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.97718e-160
NZ_CP028122.1\|WP_108942465.1\|3153897_3155376_+\|sugar-kinase	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	7.9423e-108
NZ_CP028122.1\|WP_000581937.1\|3163092_3163341_-\|type-II-toxin-antitoxin-system-antitoxin-MazE	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	6.19513e-48
NZ_CP028122.1\|WP_001268452.1\|3157712_3158585_+\|YgcG-family-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	1.00793e-100
NZ_CP028122.1\|WP_000059287.1\|3149965_3151420_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	1.80039e-82
NZ_CP028122.1\|WP_021542211.1\|3165700_3167002_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NZ_CP028122.1\|WP_000254745.1\|3162757_3163093_-\|endoribonuclease-MazF	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	2.42227e-74
NZ_CP028122.1\|WP_001442280.1\|3146920_3147781_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	3.54344e-89
NZ_CP028122.1\|WP_001355757.1\|3147777_3148557_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	8.08499e-62
NZ_CP028122.1\|WP_000210878.1\|3160030_3161668_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP028122.1\|WP_108942463.1\|3152593_3153871_+\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	2.49608e-29
NZ_CP028122.1\|WP_000147666.1\|3148534_3149944_-\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.50431e-51
NZ_CP028122.1\|WP_000109367.1\|3145920_3146181_+\|ferredoxin-family-protein	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	8.55479e-42
NZ_CP028122.1\|WP_000036723.1\|3158644_3159943_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0

>NZ_CP028122.1|WP_108942465.1|3153897_3155376_+|sugar-kinase
MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCFAGHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKSWTWSEDAAVMDKFNIPRHMLFDVQMPGTVLGHITPQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKALPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDARAQDLSPEDLLNKKASSVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYCSILESVALTLKNNYDNMCNEMNHFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDKMVRVKDIFIPIESNAKRYDAMNKGIFKDLTKHTDVILKKSYEVMHGELGNVDSIQSWSNA
>NZ_CP028122.1|WP_108942463.1|3152593_3153871_+|MFS-transporter
MQHNSYRRWITLSIISFSGGVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQVAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSASLKTVIIIYSVVYILLGILCWFFVSDNNNLRSANNEEKQSFQLSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSVLGLLALTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEARTPSYIMGTTVGICSVIGFLPDVFVYPIIGHWQDTLPAAEAYRNMWLMGMAALAMVIVFTFLLFQKIRTADSAPAMASSK
>NZ_CP028122.1|WP_000021321.1|3151489_3152275_-|SDR-family-oxidoreductase
MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDNGETKEMIEKQGVEVDFMQVDITAEGAPQKIIAACCERFGTVDILVNNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLASPASNYVNGHLLVVDGGYLVR
>NZ_CP028122.1|WP_000059287.1|3149965_3151420_-|FAD-binding-oxidoreductase
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDIKTGFNILREVMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKATGEGIAEIVARYPQCQRVDSKLIETWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNGIMNTGTIYPIEK
>NZ_CP028122.1|WP_000147666.1|3148534_3149944_-|MFS-transporter
MTGRCLFGFSGEKPFLLPDNEGVKMNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISENPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVVTATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLATVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV
>NZ_CP028122.1|WP_001355757.1|3147777_3148557_-|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MNILLAFKAEPDAGMLAEKEWQAAAQGKSGPDISLLRSLLGADEQAAAALLLAQRKNGTPMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFAPEFVARHIAEWQHQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDALFITLEQRTEHGLRCCRVRLPVVIAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAEMPAMQCLQLARAEQRRGATLIDGQTVAEKAQKLWQDYLRQRMQP
>NZ_CP028122.1|WP_001442280.1|3146920_3147781_-|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNIAIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQVLDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVSSLDIPTVSVRKSHWGNALTATLQTEKRPLCLSLARQAGAAKNATLPSGMQQLNIVPGALPDWLVSTEDLKNVTRDPLAEARRVLVVGQGGEADNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAGVRNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEALVTNIHADCQ
>NZ_CP028122.1|WP_108942461.1|3146197_3146773_+|glycerol-3-phosphate-responsive-antiterminator
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISNIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMSKVLGWVTEKIHQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>NZ_CP028122.1|WP_000109367.1|3145920_3146181_+|ferredoxin-family-protein
MSVAHNLWRVADAPHIVPADSVERQMVQRLINACPAGLFSLTPEGDLRVDYHGCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG
>NZ_CP028122.1|WP_001347765.1|3144658_3145930_+|FAD-dependent-oxidoreductase
MEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNLSGGRLYTHALAELLPQFHLTAPLERRITHESLSLLTPDGVTTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVLAERHGLVTRPAGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSGRICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQSRVPASELLTRFKAHPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLVGDALRSCVNTGISVRGMDMALTGAQAAAQTLISACQHREPQNLFALYHHNVERSLLWDVLQRYQHVPALLQRPGWYRAWPALMQDISRDLWDQGDKPVPPLRQLFWRHLRRHGLWHLAGDVIRSLRCL
>NZ_CP028122.1|WP_001199973.1|3156748_3157420_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP028122.1|WP_001288227.1|3157558_3157699_+|hypothetical-protein
MSEENKENGFNHVKTFTKIIFIFSVLVFNDNESKITDAAVNLFIQI
>NZ_CP028122.1|WP_001268452.1|3157712_3158585_+|YgcG-family-protein
MRYFILMFTFVCSFVAAQPTIVPQLQQQVTDLTSSLNSQEKKELTHKLESIFNNTQVQIAVLIVPTTKDETIEQYATRVFDNWRLGDAKRNDGILIIVAWSDRTVRIQVGYGLEEKVTDALAGDIIRSNMIPAFKQQKFAQGLELAINALNSQLTSQHQYPTNPSESESASSSDHYYFAIFWVFAVMFFPFWFFHQGSNFCRACKSGVCISAIYLLDLFLFSDKIFSIAVFSFFFTFTIFMVFTCLCVLQKRASGKSYHSDNSGSGGGSSGGGFSGGGGSSGGGGASGRW
>NZ_CP028122.1|WP_000036723.1|3158644_3159943_-|phosphopyruvate-hydratase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP028122.1|WP_000210878.1|3160030_3161668_-|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>NZ_CP028122.1|WP_001071648.1|3161895_3162687_-|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>NZ_CP028122.1|WP_000254745.1|3162757_3163093_-|endoribonuclease-MazF
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPYTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG
>NZ_CP028122.1|WP_000581937.1|3163092_3163341_-|type-II-toxin-antitoxin-system-antitoxin-MazE
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW
>NZ_CP028122.1|WP_000226815.1|3163418_3165653_-|GTP-pyrophosphokinase
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS
>NZ_CP028122.1|WP_021542211.1|3165700_3167002_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVSVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQVMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLAKQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK

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Crispr_ID: NZ_CP028122_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028122_4

4157106-4157256

Unclear

Consensus_repeat	Method
CTTTGGGCAATTGAAGCCCTCTGT	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP028122_4

>merge|NZ_CP028122|4|4157106-4157256|CRISPRCasFinder
CTTTGGGCAATTGAAGCCCTCTGTGCAGAAGGTTATCGCGGTCAGGTTGTGATAAAAACGCGCCTCTTTGGGCAATTGAAGCCCACTGTAAAGCGGCTTATCACAACAGGCTGTAGCGGGTGCTTATCTTCTGGCAACTGGAGCCACCTGT

>NZ_CP028122|4|4|4157106-4157256|CRISPRCasFinder
CTTTGGGCAATTGAAGCCCTCTGT	GCAGAAGGTTATCGCGGTCAGGTTGTGATAAAAACGCGCCT
CTTTGGGCAATTGAAGCCCACTGT	AAAGCGGCTTATCACAACAGGCTGTAGCGGGTGCTTAT
CTTCTGGCAACTGGAGCCACCTGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028122.1\|WP_032346791.1\|4156590_4156884_+\|PerC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|310570
NZ_CP028122.1\|WP_106904183.1\|4150474_4151872_+\|host-cell-division-inhibitor-Icd-like-protein	unknown	unknown	gnl\|CDD\|371132
NZ_CP028122.1\|WP_000924289.1\|4162473_4163091_+\|trimeric-intracellular-cation-channel-family-protein	unknown	unknown	gnl\|CDD\|225415
NZ_CP028122.1\|WP_000920685.1\|4152321_4152507_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028122.1\|WP_000135058.1\|4165705_4165981_+\|DNA-directed-RNA-polymerase-subunit-omega	unknown	unknown	gnl\|CDD\|188073
NZ_CP028122.1\|WP_001295237.1\|4165027_4165651_+\|guanylate-kinase	unknown	unknown	gnl\|CDD\|234719
NZ_CP028122.1\|WP_000280488.1\|4165999_4168108_+\|bifunctional-GTP-diphosphokinase/guanosine-3',5'-bis-pyrophosphate-3'-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236843
NZ_CP028122.1\|WP_001299758.1\|4161357_4162182_+\|DNA-damage-inducible-protein-D	unknown	unknown	gnl\|CDD\|183178
NZ_CP028122.1\|WP_001347580.1\|4163087_4164770_-\|NAD-dependent-DNA-ligase-LigB	unknown	unknown	gnl\|CDD\|236150
NZ_CP028122.1\|WP_000833604.1\|4153132_4154956_+\|DNA-primase	unknown	unknown	gnl\|CDD\|225913
NZ_CP028122.1\|WP_001076065.1\|4156154_4156622_+\|ProQ/FinO-family-protein	unknown	unknown	gnl\|CDD\|377323
NZ_CP028122.1\|WP_001186248.1\|4152764_4152956_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028122.1\|WP_032346790.1\|4157334_4157721_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028122.1\|WP_108942518.1\|4168114_4168804_+\|tRNA-(guanosine(18)-2'-O)-methyltransferase-TrmH	unknown	unknown	gnl\|CDD\|236837
NZ_CP028122.1\|WP_000197492.1\|4157815_4158277_+\|PerC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|310570
NZ_CP028122.1\|WP_000136566.1\|4155242_4155692_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028122.1\|WP_000332806.1\|4152510_4152720_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028122.1\|WP_032182858.1\|4155688_4156138_+\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|239942
NZ_CP028122.1\|WP_001204827.1\|4159618_4160011_+\|antitermination-protein	unknown	unknown	gnl\|CDD\|368957
NZ_CP028122.1\|WP_001247065.1\|4149495_4150272_+\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|372608

Protein	Function_ID	Function_description	E-value
NZ_CP028122.1\|WP_032346791.1\|4156590_4156884_+\|PerC-family-transcriptional-regulator	gnl\|CDD\|310570	pfam06069, PerC, PerC transcriptional activator. PerC is a transcriptional activator of EaeA/BfpA expression in enteropathogenic bacteria.	4.78529e-25
NZ_CP028122.1\|WP_106904183.1\|4150474_4151872_+\|host-cell-division-inhibitor-Icd-like-protein	gnl\|CDD\|371132	pfam10554, Phage_ASH, Ash protein family. This family was identified by Iyer and colleagues. It includes the Ash protein from bacteriophage P4.	6.80479e-13
NZ_CP028122.1\|WP_000924289.1\|4162473_4163091_+\|trimeric-intracellular-cation-channel-family-protein	gnl\|CDD\|225415	COG2860, COG2860, Predicted membrane protein [Function unknown].	2.97383e-87
NZ_CP028122.1\|WP_001295237.1\|4165027_4165651_+\|guanylate-kinase	gnl\|CDD\|234719	PRK00300, gmk, guanylate kinase; Provisional.	5.7915e-137
NZ_CP028122.1\|WP_000280488.1\|4165999_4168108_+\|bifunctional-GTP-diphosphokinase/guanosine-3',5'-bis-pyrophosphate-3'-pyrophosphohydrolase	gnl\|CDD\|236843	PRK11092, PRK11092, bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase.	0
NZ_CP028122.1\|WP_001299758.1\|4161357_4162182_+\|DNA-damage-inducible-protein-D	gnl\|CDD\|183178	PRK11525, dinD, DNA-damage-inducible protein D; Provisional.	2.69653e-170
NZ_CP028122.1\|WP_001347580.1\|4163087_4164770_-\|NAD-dependent-DNA-ligase-LigB	gnl\|CDD\|236150	PRK08097, ligB, NAD-dependent DNA ligase LigB.	0
NZ_CP028122.1\|WP_000833604.1\|4153132_4154956_+\|DNA-primase	gnl\|CDD\|225913	COG3378, COG3378, Phage associated DNA primase [General function prediction only].	1.05748e-87
NZ_CP028122.1\|WP_001076065.1\|4156154_4156622_+\|ProQ/FinO-family-protein	gnl\|CDD\|377323	pfam04352, ProQ, ProQ/FINO family. This family includes ProQ, which is required for full activation of the osmoprotectant transporter, ProP, in Escherichia coli. This family includes several bacterial fertility inhibition (FINO) proteins. The conjugative transfer of F-like plasmids is repressed by FinO, an RNA binding protein. FinO interacts with the F-plasmid encoded traJ mRNA and its antisense RNA, FinP, stabilizing FinP against endonucleolytic degradation and facilitating sense-antisense RNA recognition. ProQ operates as an RNA-chaperone, binding RNA and bringing about both RNA strand-exchange and RNA duplexing. This suggests that in fact it does not regulate ProP transcription but rather regulates ProP translation through activity as an RNA-binding protein.	1.06867e-25
NZ_CP028122.1\|WP_000197492.1\|4157815_4158277_+\|PerC-family-transcriptional-regulator	gnl\|CDD\|310570	pfam06069, PerC, PerC transcriptional activator. PerC is a transcriptional activator of EaeA/BfpA expression in enteropathogenic bacteria.	3.13844e-10
NZ_CP028122.1\|WP_000135058.1\|4165705_4165981_+\|DNA-directed-RNA-polymerase-subunit-omega	gnl\|CDD\|188073	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit. This small component of highly purified E. coli RNA polymerase is not required for transcription, but acts in assembly and is present in stochiometric amounts. The trusted cutoff excludes archaeal homologs but captures some organellar sequences. [Transcription, DNA-dependent RNA polymerase].	4.81124e-23
NZ_CP028122.1\|WP_108942518.1\|4168114_4168804_+\|tRNA-(guanosine(18)-2'-O)-methyltransferase-TrmH	gnl\|CDD\|236837	PRK11081, PRK11081, tRNA guanosine-2'-O-methyltransferase; Provisional.	4.80471e-178
NZ_CP028122.1\|WP_032182858.1\|4155688_4156138_+\|single-stranded-DNA-binding-protein	gnl\|CDD\|239942	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity.	6.70169e-24
NZ_CP028122.1\|WP_001204827.1\|4159618_4160011_+\|antitermination-protein	gnl\|CDD\|368957	pfam06530, Phage_antitermQ, Phage antitermination protein Q. This family consists of several phage antitermination protein Q and related bacterial sequences. Antiterminator proteins control gene expression by recognising control signals near the promoter and preventing transcriptional termination which would otherwise occur at sites that may be a long way downstream.	1.65925e-68
NZ_CP028122.1\|WP_001247065.1\|4149495_4150272_+\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|372608	pfam13455, MUG113, Meiotically up-regulated gene 113. This is a family of fungal proteins found to be up-regulated in meiosis.	4.18048e-09

>NZ_CP028122.1|WP_032346791.1|4156590_4156884_+|PerC-family-transcriptional-regulator
MITDSVAQKLEERGLWRRAATRWSDVLLHAETDREREEAARRRGICIIKSRRMPEQFVTFGDVKKAADRTLKEMGINPQDEWKNYSFSDAGDDLALP
>NZ_CP028122.1|WP_001076065.1|4156154_4156622_+|ProQ/FinO-family-protein
MNQQTTQQDQTTRRPTERPSWRHMTKRQRKNRRRINRLAEYWPELFGAENIKPLKAGVIHDMLKDAKARELPIGHGVLRGALTSYIHTTRYLKAIVAGGARYGLNGQPCGEVTEEDKSVASELLKRRLAQIKQQNIQRQDTGGGESDNRQRGTET
>NZ_CP028122.1|WP_032182858.1|4155688_4156138_+|single-stranded-DNA-binding-protein
MTAQIAAYGRLVDDPQEKQTSKGTPMTLARMAVSLPCSQAQDGQATLWLSVLAFGKQADALARHEKGDLISVAGNMQISQWTGQNGETRQGWQVIADSVISARSARPGGKRGQQGKATEALDRAKRQTGQQGNQPPAGGDDPFSDDIPF
>NZ_CP028122.1|WP_000136566.1|4155242_4155692_+|hypothetical-protein
MTEKHAQKSHSHAIDLTEPESVVRFVSVRGRATLYIPDEHLHHCDKHKLPILIVWKRTLYADVTWLNDSLMLIHRDLFEREEFRRDIEERAEKIYEKYSANSKRSARAIAHHFMTLYDLKAEDAEKAACDLFDMTTDIIQEYRNKERRP
>NZ_CP028122.1|WP_000833604.1|4153132_4154956_+|DNA-primase
MKSAPNLKKQPRGKKHADTEVIIFAGSDAWAHAKQWLEQDGKLAGDNIPPVVLADEQLKDIGNLQIVPDGRKSARIYKAGHLDQVMVKGIGQKLAAAGVQDADYYPEGMHHNERQNWRNYLETERKNISDGLVIELPVKKKERGKGDDATSLALNQMGASQRGEVLLAHYGGELAINADSDTVHYYNSVVWVPVQDKELQRTMAQIFIDEDICYSQNAIKSAVDTMKLSLPVMGNTARNLIGFSNGVFDTRTGDFREHDKNDWLLIASELPFTPPAEGETLATHAPNFWKWLRRSVAENDRKADRVLAALFMVLANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSASMKALEDARERALVVGFSLIILPDMTRYAGDGAGIKAITGGDKVAIDPKHKAPYSTRIPAVVLAVNNSAMSFSDRSGGISRRRVIFNFSEVVPENERDPMLPEKIEGELAVVIRHLLTRFSDQDEARLLLHEQQKSEEALAIKREGDSLVDFCGYLMSSVMCDGLLVGNAEIIPFSPRRYLYHAYLAYMRAHGFSKPVTLTRFGADMPGAMAEYGREYMKRKTKHGLRSNVTLTEESEDWMPSCAPVKNEGDKN
>NZ_CP028122.1|WP_001186248.1|4152764_4152956_+|hypothetical-protein
MQQITLAEASLQAQQVEVISRMIERNHEEIDDHDLSVIAGLIKQLSSNVAVWLMTEEEKRGEQ
>NZ_CP028122.1|WP_000332806.1|4152510_4152720_+|hypothetical-protein
MCDFSDMTVDEAAKSAMQAELICSLMMGNTGEMTEGEIESLLALIKQLTGKAGSWLIAASGDDAICVND
>NZ_CP028122.1|WP_000920685.1|4152321_4152507_+|hypothetical-protein
MLKTFRVFSRAVNKRGYTVGITQNVKAENVQAAISTVINKSAKAGLSGVIIHAVTCIQDEE
>NZ_CP028122.1|WP_106904183.1|4150474_4151872_+|host-cell-division-inhibitor-Icd-like-protein
MAGKTKATTKGSPVEIKEIKRITNYAMSVAGGQCYQPGGRFLVAFNRRGYFSTKSSRANFLAFVCDAFDSSSHVFPRLILFSIKREAAFLFSDESMGLLPVCCSTMASMSSWCCSCRKNFSSSGGKSILISCTAERRSTSHHGADGCYSFYGVKEAKADRYRFLGEINRRGYLSRNASSANRFGLVRGEGLSKDSRSRRTFSRWRSSMDNAISCNSSFVIVCTRKAVRCSTSYHSAGIFYGCNLRDDSGRFATYCININNVMLLCAFKENAGIFRTNFSRNTSDHLSKKAAYTEAIPYKTGIGRRNPFNCEATNDARSVFFSASDLRHINGVVHCAYPCTIQSFHELHFAQRHQQTMVMLAGLPKGRPESLQSGIPTPASVTALCERRNSSGDVIYHCKEAATMATTPTLVHSQTAFIWRFITVGTSERQIIHVTAWTELEARNRCPSGCVAVFAARIRQEASHG
>NZ_CP028122.1|WP_001247065.1|4149495_4150272_+|GIY-YIG-nuclease-family-protein
MRNYVIPPNHEGGYIYVALSDIGLVKVGKTRNVSARMKQLSTGSGIVITKVEVLGPFVNYGQVELAIHAKLTSERRSGEWFSADFDTVKAIAIDTSGIGTPGAELVNNDAYRYERVFLWFSAHEEQIKYEQALCEILSDTAINFLKEYGTACAPYVALCIHTMGGVTLQQGQKAYSVYPCGFKESTLDQLREDWNNFADKDIFEDSDFDDFLIDISDKDKFKSEAEEWRTDAINNLFTELTDDYQRWLARRMGEHEHA
>NZ_CP028122.1|WP_032346790.1|4157334_4157721_-|hypothetical-protein
MRLTQYKKEILSYFTPDNLAWVSVEIGNPPFDVSGVAYLLHGMDSFNSRYQIESTRRTLEAMVRDGLLERINVFERREGAGDGVRRKVARYGLPGRSVVARDGEGRNGAIDGECIRINATDVVLVDGQ
>NZ_CP028122.1|WP_000197492.1|4157815_4158277_+|PerC-family-transcriptional-regulator
MTRLKRWRIAASGGVLLNAGENCSDRQKLMKRGTILPNEGRNARQKPPDQKQQSGGMYAPSGQQRPERLKIWGLTRKKKILYGARSTGVKQGEETEVNMDTITDKKAEQLESQGLWRRAAARWLDVMKEAHTDPQREHIARRREICLANFRML
>NZ_CP028122.1|WP_001204827.1|4159618_4160011_+|antitermination-protein
MRDIQQVLERWGAWAANNRENVTWSSVAAGFKGIIPPKITSRPQCCDDDAMVICGCIARLYRNNRDLHDLLVDYYVLGKTFMALARKHGCSDGHIGKRLQKAEGVVEGMLMMLDVKLEMDRYVERDSVTA
>NZ_CP028122.1|WP_001299758.1|4161357_4162182_+|DNA-damage-inducible-protein-D
MNEHHQPFEEIRHYGTEGQEFWSARELAPLLDYRDWRNFQKVLARATQACEASNQAASDHFVETTKMVVLGSGAQRELEDVHLSRYACYLVVQNGDPAKPVIAAGQTYFAIQTRRQELADDEAFKQLREDEKRLFLRNELKEHNKQLVEAAQQAGVATATDFAIFQNHGYQGLYGGLDQKAIHQLKGLKKSQKILDHMGSTELAANLFRATQTEEKLKRDGVNSKQQANTTHFDVGSKVRQTIQELGGTMPEELPTPQVSIKQLENSVKITEKK
>NZ_CP028122.1|WP_000924289.1|4162473_4163091_+|trimeric-intracellular-cation-channel-family-protein
MLLHILYLVGITAEAMTGALAAGRRRMDTFGVIIIATATAIGGGSVRDILLGHYPLGWVKHPEYVIIVATAAVLTTIVAPVMPYLRKVFLVLDALGLVVFSIIGAQVALDMGHGPIIAVVAAVTTGVFGGVLRDMFCKRIPLVFQKELYAGVSFASAVLYIALQHYVSNHDVVIISTLVFGFFARLLALRLKLGLPVFYYSHEGH
>NZ_CP028122.1|WP_001347580.1|4163087_4164770_-|NAD-dependent-DNA-ligase-LigB
MKVWMAILISILCWQSSVWAVCPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPRDVMMPPLNGAVMHPVAHTGVRKMVDKNALSLWMRERSDLWVQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANSTLQGEIFLQREGHIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKLPFVTDGVVVRGAKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKVQRVNIGSVRRWEEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIGEAGWRALHQTHRFEHIFSWLLLTPEQLQNTPGIAKSKSAQLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKENAQIKKLGSWLAAQQITGFEP
>NZ_CP028122.1|WP_001295237.1|4165027_4165651_+|guanylate-kinase
MAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARSIFILPPSKIELDRRLRGRGQDSEEVIAKRMAQAVAEMSHYAEYDYLIVNDDFDTALTDLKTIIRAERLRMSRQKQRHDALISKLLAD
>NZ_CP028122.1|WP_000135058.1|4165705_4165981_+|DNA-directed-RNA-polymerase-subunit-omega
MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQILDVRERQEQQEQEAAELQAVTAIAEGRR
>NZ_CP028122.1|WP_000280488.1|4165999_4168108_+|bifunctional-GTP-diphosphokinase/guanosine-3',5'-bis-pyrophosphate-3'-pyrophosphohydrolase
MYLFESLNQLIQTYLPEDQIKRLRQAYLVARDAHEGQTRSSGEPYITHPVAVACILAEMKLDYETLMAALLHDVIEDTPATYQDMEQLFGKSVAELVEGVSKLDKLKFRDKKEAQAENFRKMIMAMVQDIRVILIKLADRTHNMRTLGSLRPDKRRRIARETLEIYSPLAHRLGIHHIKTELEELGFEALYPNRYRVIKEVVKAARGNRKEMIQKILSEIEGRLQEAGIPCRVSGREKHLYSIYCKMVLKEQRFHSIMDIYAFRVIVNDSDTCYRVLGQMHSLYKPRPGRVKDYIAIPKANGYQSLHTSMIGPHGVPVEVQIRTEDMDQMAEMGVAAHWAYKEHGETSTTAQIRAQRWMQSLLELQQSAGSSFEFIESVKSDLFPDEIYVFTPEGRIVELPAGATPVDFAYAVHTDIGHACVGARVDRQPYPLSQPLTSGQTVEIITAPGARPNAAWLNFVVSSKARAKIRQLLKNLKRDDSVSLGRRLLNHALGGSRKLNEIPQENIQRELDRMKLATLDDLLAEIGLGNAMSVVVAKNLQHGDASIPPATQSHGHLPIKGADGVLITFAKCCRPIPGDPIIAHVSPGKGLVIHHESCRNIRGYQKEPEKFMAVEWDKETAQEFITEIKVEMFNHQGALANLTAAINTTTSNIQSLNTEEKDGRVYSAFIRLTARDRVHLANIMRKIRVMPDVIKVTRNRN
>NZ_CP028122.1|WP_108942518.1|4168114_4168804_+|tRNA-(guanosine(18)-2'-O)-methyltransferase-TrmH
MNPTRYARICEMLAKRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAVWPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVAHLKGRGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLFEGGYPVLAKVAKRKGLPYPHVNQQGEIEADADWWATMQAAG

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Crispr_ID: NZ_CP028122_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028122_5

4943436-4943575

Orphan

Consensus_repeat	Method
TGTGTAGGTCGGATAAGGCGCTCACGCCGCATCCGACAATAACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP028122_5

>merge|NZ_CP028122|5|4943436-4943575|CRISPRCasFinder
TGTGTAGGTCGGATAAGGCGCTCACGCCGCATCCGACAATAACAGCATTGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAATAACA

>NZ_CP028122|5|5|4943436-4943575|CRISPRCasFinder
TGTGTAGGTCGGATAAGGCGCTCACGCCGCATCCGACAATAACA	GCATTGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAGTTCGGTGC
TGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAATAACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028122.1\|WP_000002953.1\|4937626_4938043_+\|ribonuclease-E-inhibitor-RraB	unknown	unknown	gnl\|CDD\|236876
NZ_CP028122.1\|WP_001589582.1\|4954465_4955338_-\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|225973
NZ_CP028122.1\|WP_000584114.1\|4945369_4946470_+\|LPS-export-ABC-transporter-permease-LptF	unknown	unknown	gnl\|CDD\|185075
NZ_CP028122.1\|WP_001439287.1\|4934233_4934686_+\|YhcH/YjgK/YiaL-family-protein	unknown	unknown	gnl\|CDD\|225345
NZ_CP028122.1\|WP_000500711.1\|4932711_4933425_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|183714
NZ_CP028122.1\|WP_001439286.1\|4933495_4934089_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP028122.1\|WP_000397144.1\|4943591_4945103_-\|leucyl-aminopeptidase	unknown	unknown	gnl\|CDD\|234863
NZ_CP028122.1\|WP_000105684.1\|4952392_4953532_-\|DNA-cytosine-methyltransferase	unknown	unknown	gnl\|CDD\|223348
NZ_CP028122.1\|WP_001499252.1\|4949302_4950322_-\|NADPH-dependent-aldehyde-reductase-Ahr	unknown	unknown	gnl\|CDD\|176186
NZ_CP028122.1\|WP_001295681.1\|4946469_4947552_+\|LPS-export-ABC-transporter-permease-LptG	unknown	unknown	gnl\|CDD\|237900
NZ_CP028122.1\|WP_001333077.1\|4951380_4952442_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028122.1\|WP_000012909.1\|4936460_4937465_-\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|179587
NZ_CP028122.1\|WP_032254881.1\|4955549_4956530_-\|9-O-acetyl-N-acetylneuraminic-acid-deacetylase	unknown	unknown	gnl\|CDD\|377084
NZ_CP028122.1\|WP_021542303.1\|4934808_4936404_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028122.1\|WP_000230283.1\|4932185_4932581_-\|RidA-family-protein	unknown	unknown	gnl\|CDD\|100005
NZ_CP028122.1\|WP_000786399.1\|4942890_4943334_-\|DNA-polymerase-III-subunit-chi	unknown	unknown	gnl\|CDD\|235581
NZ_CP028122.1\|WP_001059394.1\|4938088_4938592_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP028122.1\|WP_001367923.1\|4955419_4955542_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225724
NZ_CP028122.1\|WP_000416392.1\|4940035_4942891_-\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235582
NZ_CP028122.1\|WP_001294545.1\|4947670_4949173_-\|DUF853-domain-containing-protein	unknown	unknown	gnl\|CDD\|283518

Protein	Function_ID	Function_description	E-value
NZ_CP028122.1\|WP_000002953.1\|4937626_4938043_+\|ribonuclease-E-inhibitor-RraB	gnl\|CDD\|236876	PRK11191, PRK11191, ribonuclease E inhibitor RraB.	4.50628e-69
NZ_CP028122.1\|WP_001589582.1\|4954465_4955338_-\|HNH-endonuclease	gnl\|CDD\|225973	COG3440, COG3440, Predicted restriction endonuclease [Defense mechanisms].	1.3443e-128
NZ_CP028122.1\|WP_000584114.1\|4945369_4946470_+\|LPS-export-ABC-transporter-permease-LptF	gnl\|CDD\|185075	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional.	0
NZ_CP028122.1\|WP_001439287.1\|4934233_4934686_+\|YhcH/YjgK/YiaL-family-protein	gnl\|CDD\|225345	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism].	6.58666e-69
NZ_CP028122.1\|WP_000500711.1\|4932711_4933425_-\|SDR-family-oxidoreductase	gnl\|CDD\|183714	PRK12742, PRK12742, SDR family oxidoreductase.	7.26747e-150
NZ_CP028122.1\|WP_001439286.1\|4933495_4934089_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	7.07225e-10
NZ_CP028122.1\|WP_000397144.1\|4943591_4945103_-\|leucyl-aminopeptidase	gnl\|CDD\|234863	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.	0
NZ_CP028122.1\|WP_000105684.1\|4952392_4953532_-\|DNA-cytosine-methyltransferase	gnl\|CDD\|223348	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair].	5.44656e-81
NZ_CP028122.1\|WP_001499252.1\|4949302_4950322_-\|NADPH-dependent-aldehyde-reductase-Ahr	gnl\|CDD\|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	1.50483e-168
NZ_CP028122.1\|WP_001295681.1\|4946469_4947552_+\|LPS-export-ABC-transporter-permease-LptG	gnl\|CDD\|237900	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional.	0
NZ_CP028122.1\|WP_000012909.1\|4936460_4937465_-\|ornithine-carbamoyltransferase	gnl\|CDD\|179587	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional.	0
NZ_CP028122.1\|WP_032254881.1\|4955549_4956530_-\|9-O-acetyl-N-acetylneuraminic-acid-deacetylase	gnl\|CDD\|377084	pfam03629, SASA, Carbohydrate esterase, sialic acid-specific acetylesterase. The catalytic triad of this esterase enzyme comprises residues Ser127, His403 and Asp391 in UniProtKB:P70665.	6.37297e-18
NZ_CP028122.1\|WP_000230283.1\|4932185_4932581_-\|RidA-family-protein	gnl\|CDD\|100005	cd02198, YjgH_like, YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.	9.92296e-58
NZ_CP028122.1\|WP_000786399.1\|4942890_4943334_-\|DNA-polymerase-III-subunit-chi	gnl\|CDD\|235581	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated.	5.53743e-66
NZ_CP028122.1\|WP_001059394.1\|4938088_4938592_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	3.68258e-19
NZ_CP028122.1\|WP_001367923.1\|4955419_4955542_+\|hypothetical-protein	gnl\|CDD\|225724	COG3183, COG3183, Predicted restriction endonuclease [Defense mechanisms].	9.30401e-09
NZ_CP028122.1\|WP_000416392.1\|4940035_4942891_-\|valine--tRNA-ligase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0
NZ_CP028122.1\|WP_001294545.1\|4947670_4949173_-\|DUF853-domain-containing-protein	gnl\|CDD\|283518	pfam05872, DUF853, Bacterial protein of unknown function (DUF853). This family consists of several bacterial proteins of unknown function. BMEI1370 is thought to be an ATPase.	0

>NZ_CP028122.1|WP_000786399.1|4942890_4943334_-|DNA-polymerase-III-subunit-chi
MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGPRGGAPVEIAWPQKRSSSPRDILISLRTSFADFATAFTEVVDFVPYEDSLKQLARERYKAYRVAGFNLNTATWK
>NZ_CP028122.1|WP_000416392.1|4940035_4942891_-|valine--tRNA-ligase
MEKTYNPQDIEQPLYEHWEKQGYFKPNGDESQESFCIMIPPPNVTGSLHMGHAFQQTIMDTMIRYQRMQGKNTLWQVGTDHAGIATQMVVERKIAAEEGKTRHDYGREAFIDKIWEWKAESGGTITRQMRRLGNSVDWERERFTMDEGLSNAVKEVFVRLYKEDLIYRGKRLVNWDPKLRTAISDLEVENRESKGSMWHIRYPLADGAKTADGKDYLVVATTRPETLLGDTGVAVNPEDPRYKDLIGKYVILPLVNRRIPIVGDEHADMEKGTGCVKITPAHDFNDYEVGKRHALPMINILTFDGDIRESAQVFDTKGNESDVYSSEIPAEFQKLERFAARKAVVAAVDALGLLEEIKPHDLTVPYGDRGGVVIEPMLTDQWYVRADVLAKPAVEAVENGDIQFVPKQYENMYFSWMRDIQDWCISRQLWWGHRIPAWYDEAGNVYVGRNEDEVRKENNLGADVVLRQDEDVLDTWFSSALWTFSTLGWPENTDALRQFHPTSVMVSGFDIIFFWIARMIMMTMHFIKDENGKPQVPFHTVYMTGLIRDDEGQKMSKSKGNVIDPLDMVDGISLPELLEKRTGNMMQPQLADKIRKRTEKQFPNGIEPHGTDALRFTLAALASTGRDINWDMKRLEGYRNFCNKLWNASRFVLMNTEGQDCGFNGGEMTLSLADRWILAEFNQTIKAYREALDSFRFDIAAGILYEFTWNQFCDWYLELTKPVMNGGTEAELRGTRHTLVTVLEGLLRLAHPIIPFITETIWQRVKVLCGITADTIMLQPFPQYDASQVDEAALADTEWLKQAIVAVRNIRAEMNIAPGKPLELLLRGCSADAERRVNENRGFLQTLARLESITVLPADDKGPVSVTKIIDGAELLIPMAGLINKEDELARLAKEVAKIEGEISRIENKLANEGFVARAPEAVIAKEREKLEGYAEAKAKLIEQQAVIAAL
>NZ_CP028122.1|WP_001059394.1|4938088_4938592_-|GNAT-family-N-acetyltransferase
MNNIAPQSPVMRRLTLQDNPAIARVIRQVSAEYGLTADKGYTVADPNLDELYQVYSQPGHAYWVVEYDGEVVGGGGIAPLAGSESDICELQKMYFLPAIRGKGLAKKLALMAMEQAREMGFKRCYLETTAFLKEAIALYEHLGFEHIDYALGCTGHVDCEVRMLREL
>NZ_CP028122.1|WP_000002953.1|4937626_4938043_+|ribonuclease-E-inhibitor-RraB
MANPEQLEEQREETRLIIEELLEDGSDPDALYTIEHHLSADDLETLEKAAVEAFKLGYEVTDPEELEVEDGDIVICCDILSECALNADLIDAQVEQLMTLAEKFDVEYDGWGTYFEDPNGEDGDDEDFVDEDDDGVRH
>NZ_CP028122.1|WP_000012909.1|4936460_4937465_-|ornithine-carbamoyltransferase
MSGFYHKHFLKLLDFTPAELNSLLQLAAKLKADKKSGKEEAKLTGKNIALIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQEIVETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTDVWVSMGEAKEKWAERIALLRDYQVNSKMMQLTGNPEVKFLHCLPAFHDDQTTLGKKMAEEFGLHGGMEVTDEVFESAASIVFDQAENRMHTIKAVMVATLSN
>NZ_CP028122.1|WP_021542303.1|4934808_4936404_+|hypothetical-protein
MSKISDFNYSQHITLADNFKQKSEVLNTWRVGMNNFARNAEGQDNTRNILDPKTFLEFLVKIFTLGYVDFSKRSNEAGRNMMAHIESSSYIKNNDGSEIMKFVMNNPEGERADLSKVEIEITLSTITTMGTRQGHTAIIFPQPDGSTNRYEGKSFERKDESSLHLITNKVLACYQREANKKMALLLNNHQLNWKDAIDYNELLEKPLASTLEKIKKEHLLLMPHVCDDTIPYLLGEGGILEEINDLKTLHDTRIASGTEGNDEINNIKINLSNILIDSLDDAKVNLEKVIDSMLKTFLKLPYINDVKILEWCFNQSMQYSDDTTKIKHARSVIDHIDFNCDQSKIAETLFFNLDKEPYKNSRELQELIWDKLVAYVNVFNLSNQEKSRLILRLFDDVKLLFNKVPVSILVNDIFLKAFFMKQPDFAKWYFYQLLKNYEGEQLYLNELGYVFGNEEKTKEIVNKFPGYVVKIFEEKIDNELKIRTRMMEILRDRKINIYEYINKEQLEKLNPPEDLRYAIEKFGWKIRTITA
>NZ_CP028122.1|WP_001439287.1|4934233_4934686_+|YhcH/YjgK/YiaL-family-protein
MIIGNIHNLQPWLPQELRQAIEHIKAHVTPETPKGKHDIEGNRLFYLISEDMTEPYEARRAEYHARYLDIQIVLKGQEGMTFSTQPAGTPETDWLADKDIAFLPEGVDEKTVILNEGDFVVFYPGEVHKPLCAVGAPAQVRKAVVKMLMA
>NZ_CP028122.1|WP_001439286.1|4933495_4934089_+|TetR/AcrR-family-transcriptional-regulator
MVTKKQSRVPGRPRRFAPEQAVSAAKVLFHQKGFDAVSVAEVTDYLGINPPSLYAAFGSKAGLFSRVLNEYVGTEAIPLADILRDDRPVGECLVEVLKEAARRYSQNGGCAGCMVLEGIHSHDPQARDIAVQYYHAAETTIYDYIARRHPQSAKCVTDFMSTVMSGLSAKAREGHSLEQLCATAALAGEAIKTILEE
>NZ_CP028122.1|WP_000500711.1|4932711_4933425_-|SDR-family-oxidoreductase
MGAFTGKTVLILGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQETGATAVFTDSADRDAVIDVVRKSGALDILVVNAGIGVFGDALELNADDIDRLFKINIHAPYHASVEAARQMPEGGRILIIGSVNGDRMPVAGMAAYAASKSALQGMARGLARDFGPRGITINVVQPGPIDTDANPANGPMRDMLHGFMAIKRHGQPEEVAGMVAWLAGPEASFVTGAMHTIDGAFGA
>NZ_CP028122.1|WP_000230283.1|4932185_4932581_-|RidA-family-protein
MVERTAVFPAGRHSLYAEHRYSAAIRSGDLLFVSGQVGSREDGTPEPDFQQQVRQAFNNLHATLAAAGCTFDDIIDVTSFHTDPENQFEDIMTVKNEIFSAPPYPNWTAVGVTWLAGFDFEIKVIARIPEQ
>NZ_CP028122.1|WP_000397144.1|4943591_4945103_-|leucyl-aminopeptidase
MEFSVKSGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKPGQTLLLHHVPNVLSERILLIGCGKERELDERQYKQVIQKTINTLNDTGSMEAVCFLTELHVKGRNNYWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRKMVFNVPTRRELTSGERAIQHGLAIAAGIKAAKDLGNMPPNICNAAYLASQARQLADSYSKNVITRVIGEQQMKELGMHSYLAVGQGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELQLPINVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYVERFEPEAVIDVATLTGACVIALGHHITGLMANHNPLAHELIAASEQSGDRAWRLPLGDEYQEQLESNFADMANIGGRPGGAITAGCFLSRFTRKYNWAHLDIAGTAWRSGKAKGATGRPVALLAQFLLNRAGFNGEE
>NZ_CP028122.1|WP_000584114.1|4945369_4946470_+|LPS-export-ABC-transporter-permease-LptF
MIIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVLNLWDTVPVRRLRASFSRKGAV
>NZ_CP028122.1|WP_001295681.1|4946469_4947552_+|LPS-export-ABC-transporter-permease-LptG
MQPFGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVVALDPDALSISGLHNYVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRKS
>NZ_CP028122.1|WP_001294545.1|4947670_4949173_-|DUF853-domain-containing-protein
MSEPLLIARTPDTELFLLPGMANRHGLITGATGTGKTVTLQKLAESLSEIGVPVFMADVKGDLTGIAQAGTASEKLLARLKNIGVNDWQPHANPVVVWDIFGEKGHPVRATVSDLGPLLLARLLNLNDVQSGVLNIIFRIADDQGLLLLDFKDLRAITQYIGDNAKSFQNQYGNISSASVGAIQRGLLSLEQQGAAHFFGEPMLDIKDWMRTDTNGKGVINILSAEKLYQMPKLYAASLLWMLSELYEQLPEAGDLEKPKLVFFFDEAHLLFNDAPQVLLDKIEQVIRLIRSKGVGVWFVSQNPSDIPDNVLGQLGNRVQHALRAFTPKDQKAVKAAAQTMRANPAFDTEKAIQELGTGEALISFLDVKGSPSVVERAMVIAPCSRMGPVTEDERNGLINHSPVYGKYEDEVDRESAYEMLQKGVQASIEQQNNPPAKGKEIAVDDGILGGLKDILFGTTGPRGGKKDGVVQTMAKSAARQVTNQIVRGMLGSLLGGRRR
>NZ_CP028122.1|WP_001499252.1|4949302_4950322_-|NADPH-dependent-aldehyde-reductase-Ahr
MSMIKSYAAKEAGGELEVYEYDPGELKPQDIEVQVDYCGICHSDLSMIDNEWGFSQYPLVAGHEVIGRVVALGSAAQDKGLQVGQRVGIGWTARSCGHCDACISGNQINCEQGAVPTIMNRGGFAEKLRADWQWVIPLPENIDIESAGPLLCGGITVFKPLLMHHITATSRVGVIGIGGLGHIAIKLLHAMGCEVTAFSSNPAKEQEVLAMGADKVVNSRDPQALKALAGQFDLIINTVNVSLDWQPYFEALTYGGNFHTVGAVLTPLSVPAFTLIAGDRSISGSATGTPYELRKLMRFAARSKVAPTTELFPMSKINDAIKHVRDGKARYRVVLKADF
>NZ_CP028122.1|WP_001333077.1|4951380_4952442_-|hypothetical-protein
MNLVNAIANLPKNRQFDYVNESNAGKIVIDSIKLPEGPIRFKRFNPTKGETLRDAKIDSISSQMLWRLANAIQEDAPINLDRVFGASYNSRSVIESLLAHTPQFYWCKLDRLEVINTKQTIKKGHKHLIYLPNSPHENGKLSEYKTNIVISEMNTEVVYQSVDSETIRPVEGMSIEESRRHAQIQIALVKIGHHLGYRTWVAANDRGLKYNGKAIAQMDGVIDSLSNEKVLSSYSEAIDGARLIDCIWFRNGKLMPAVMEIEHSTGIISGLTRMKNFCDYAPRLQDIRWTIVAPDEYREKVIEFANRPQFRELDTKFFPYSAVEELYSLCERRKPQGITDKFLDSFMERCIKH
>NZ_CP028122.1|WP_000105684.1|4952392_4953532_-|DNA-cytosine-methyltransferase
MSTLKPAVFSFFSGSGFLDLGFENSGYEVVFVNEFHPPFMDAYKHSRAVMNKPIPRFGYAEESIEEIDHKKLKDNIKALKKEKRLIGFIGGPPCPDFSVAGKNKGRDGENGKLSQSYIDIIVEMKPDFFLFENVKGLYRTLKHREFFEHLKEQLMDVGYVLHERLINSIEYGAPQDRERIILLGFQNKNLTKSFNWSGRLYPDRSAFGYNWPTTNEFVEDSTLVMPESLPEELTVDYWFRKNNVSEHVNAKHVFTARAGLVRFKAVAEGDDSKKSYKRLHRWRYSPTAAYGNNEVHLHPYKPRRITVAEALAIQSLPKEFELPSYMTLSNMFKTVGNGVPYLAAFGIAKSILEHLGIKDEFNSNESCECDSKSSQKQAV
>NZ_CP028122.1|WP_001589582.1|4954465_4955338_-|HNH-endonuclease
MASSKSLQQAIANIKIWHKGEQRAPHKPLLLLYVLAGYLNGHPRLFDYGSEIYEPLHSLLERFGPQRSQYRPDMPFWRLQGDGFWQLHNAELCSTAGSSRQPPVKELTEYHVAGGFDEQHYALVTGNKKLINTLAQQILEAHFTESIQEEIADELGFDLQQIRKQRDPLFRKNVLRAYNYQCAICGFNMRHDDTTVALEAAHIKWKQHGGPCEIPNGLALCAIHHKAFDKGSIGLDENMRVLVSDAVNGGGIVERLFWDFDGKTIALPQVRKNYPYEGFVEWHRKEVFRG
>NZ_CP028122.1|WP_001367923.1|4955419_4955542_+|hypothetical-protein
MISFVFLLPVYPNCHAMLHRRKPPFTPEELKALMDANKPN
>NZ_CP028122.1|WP_032254881.1|4955549_4956530_-|9-O-acetyl-N-acetylneuraminic-acid-deacetylase
MDAIISPDYYYVLTVAGQSNAMAYGEGLPLPDREDAPHPRIKQLARFAHTHPGGPSCHFNDIIPLTHCPHDVQDMQGYHHPLATNHQTQYGTVGQALHIARKLLPSIPDNAGVLIVPCCRGGSAFIAGSEGTYSERHGASHDACRWGSDTPLYQDLVSRTRAALAKNPQNKFLGVCWMQGEFDLMTSDYASHPQHFNHMVEAFRRDLKQYHSQLNNITDAPWFCGDTTWYWKENFPHSYEAIYGNYQNNVLANIIFVDFQQQGERGLTNAPDEDPDDLSTGYYGSAYRSPENWTTALRSSHFSAAARRGIISDKFVEAILQFWREK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP028122_3	3.2\|3156105\|32\|NZ_CP028122\|CRISPRCasFinder,CRT	3156105-3156136	32	MT330372	Cronobacter phage JC01, complete genome	47177-47208	1	0.969
NZ_CP028122_3	3.8\|3156106\|32\|NZ_CP028122\|PILER-CR	3156106-3156137	32	MT330372	Cronobacter phage JC01, complete genome	47177-47208	1	0.969
NZ_CP028122_2	2.1\|3129437\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3129437-3129468	32	NZ_CP050442	Tolypothrix sp. PCC 7910 plasmid unnamed2, complete sequence	41503-41534	6	0.812
NZ_CP028122_2	2.5\|3129681\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3129681-3129712	32	NZ_CP013381	Burkholderia sp. Bp5365 strain MSMB43 plasmid pMSMB43, complete sequence	29600-29631	6	0.812
NZ_CP028122_2	2.5\|3129681\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3129681-3129712	32	NZ_CP009547	Burkholderia sp. 2002721687 plasmid pBTU, complete sequence	88258-88289	6	0.812
NZ_CP028122_2	2.11\|3130047\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3130047-3130078	32	NC_048766	Pantoea phage vB_PagM_AAM37, complete genome	4684-4715	6	0.812
NZ_CP028122_2	2.2\|3129498\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3129498-3129529	32	AP014324	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S33-C64, * SEQUENCING IN PROGRESS *	30389-30420	7	0.781
NZ_CP028122_2	2.5\|3129681\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3129681-3129712	32	NZ_CP043960	Streptomyces tendae strain 139 plasmid unnamed1, complete sequence	201710-201741	7	0.781
NZ_CP028122_2	2.11\|3130047\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3130047-3130078	32	MK095606	Pantoea phage vB_PagS_AAS23, complete genome	1556-1587	7	0.781
NZ_CP028122_2	2.11\|3130047\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3130047-3130078	32	MG732930	Enterobacter phage Ec_L1, complete genome	26019-26050	7	0.781
NZ_CP028122_2	2.2\|3129498\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3129498-3129529	32	NZ_CP014218	Clostridium botulinum strain B515 plasmid pRSJ21_3, complete sequence	43450-43481	8	0.75
NZ_CP028122_2	2.2\|3129498\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3129498-3129529	32	NZ_CP014173	Clostridium botulinum strain B609 plasmid pRSJ22_2, complete sequence	7656-7687	8	0.75
NZ_CP028122_2	2.4\|3129620\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3129620-3129651	32	CP023013	Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence	1077804-1077835	8	0.75
NZ_CP028122_2	2.4\|3129620\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3129620-3129651	32	NZ_CP023017	Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence	1081182-1081213	8	0.75
NZ_CP028122_2	2.4\|3129620\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3129620-3129651	32	NZ_CP015851	Ralstonia solanacearum strain YC40-M plasmid, complete sequence	1264658-1264689	8	0.75
NZ_CP028122_2	2.4\|3129620\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3129620-3129651	32	NZ_CP022783	Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence	1083481-1083512	8	0.75
NZ_CP028122_2	2.4\|3129620\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3129620-3129651	32	NZ_CP022795	Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence	1080184-1080215	8	0.75
NZ_CP028122_2	2.4\|3129620\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3129620-3129651	32	CP023015	Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence	909207-909238	8	0.75
NZ_CP028122_2	2.4\|3129620\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3129620-3129651	32	NZ_CP052077	Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence	1059848-1059879	8	0.75
NZ_CP028122_2	2.4\|3129620\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3129620-3129651	32	NZ_CP052079	Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence	1059871-1059902	8	0.75
NZ_CP028122_2	2.4\|3129620\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3129620-3129651	32	NZ_CP052125	Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence	1059871-1059902	8	0.75
NZ_CP028122_2	2.4\|3129620\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3129620-3129651	32	NZ_CP052123	Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence	1059871-1059902	8	0.75
NZ_CP028122_2	2.4\|3129620\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3129620-3129651	32	NZ_CP052081	Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence	1059871-1059902	8	0.75
NZ_CP028122_2	2.4\|3129620\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3129620-3129651	32	NZ_CP052083	Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence	1059871-1059902	8	0.75
NZ_CP028122_2	2.11\|3130047\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3130047-3130078	32	JN022534	Xanthomonas phage vB_XveM_DIBBI, complete genome	4380-4411	8	0.75
NZ_CP028122_2	2.12\|3130108\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3130108-3130139	32	NZ_CP043499	Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence	863544-863575	8	0.75
NZ_CP028122_2	2.12\|3130108\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3130108-3130139	32	NZ_CP022762	Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence	1275990-1276021	8	0.75
NZ_CP028122_2	2.12\|3130108\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3130108-3130139	32	NZ_CP023017	Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence	1339310-1339341	8	0.75
NZ_CP028122_2	2.12\|3130108\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3130108-3130139	32	NZ_CP014703	Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence	1275012-1275043	8	0.75
NZ_CP028122_2	2.12\|3130108\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3130108-3130139	32	NZ_CP022771	Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence	1275982-1276013	8	0.75
NZ_CP028122_2	2.12\|3130108\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3130108-3130139	32	NZ_CP022777	Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence	1275336-1275367	8	0.75
NZ_CP028122_2	2.12\|3130108\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3130108-3130139	32	NZ_CP022799	Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence	1275973-1276004	8	0.75
NZ_CP028122_2	2.14\|3130230\|32\|NZ_CP028122\|CRISPRCasFinder,CRT	3130230-3130261	32	KU160664	Arthrobacter phage Salgado, complete genome	51730-51761	8	0.75
NZ_CP028122_2	2.14\|3130230\|32\|NZ_CP028122\|CRISPRCasFinder,CRT	3130230-3130261	32	MF140418	Arthrobacter phage LiSara, complete genome	52060-52091	8	0.75
NZ_CP028122_3	3.4\|3156227\|32\|NZ_CP028122\|CRISPRCasFinder,CRT	3156227-3156258	32	NZ_CP010769	Phaeobacter piscinae strain P13 plasmid pP13_b, complete sequence	121002-121033	8	0.75
NZ_CP028122_3	3.10\|3156228\|32\|NZ_CP028122\|PILER-CR	3156228-3156259	32	NZ_CP010769	Phaeobacter piscinae strain P13 plasmid pP13_b, complete sequence	121002-121033	8	0.75
NZ_CP028122_2	2.2\|3129498\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3129498-3129529	32	MN856013	Myoviridae sp. isolate 131, complete genome	19253-19284	9	0.719
NZ_CP028122_2	2.4\|3129620\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3129620-3129651	32	NZ_CP019604	Croceicoccus marinus strain E4A9 plasmid pCME4A9II, complete sequence	45733-45764	9	0.719
NZ_CP028122_2	2.4\|3129620\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3129620-3129651	32	NZ_CP025432	Paracoccus zhejiangensis strain J6 plasmid pPZ02, complete sequence	92571-92602	9	0.719
NZ_CP028122_2	2.4\|3129620\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3129620-3129651	32	AY526908	Bordetella phage BMP-1, complete genome	4333-4364	9	0.719
NZ_CP028122_2	2.4\|3129620\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3129620-3129651	32	NC_005357	Bordetella phage BPP-1, complete genome	4333-4364	9	0.719
NZ_CP028122_2	2.4\|3129620\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3129620-3129651	32	AY526909	Bordetella phage BIP-1, complete genome	4333-4364	9	0.719
NZ_CP028122_2	2.12\|3130108\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3130108-3130139	32	NZ_CP022775	Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence	1354177-1354208	9	0.719
NZ_CP028122_2	2.12\|3130108\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3130108-3130139	32	NZ_CP026091	Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence	997239-997270	9	0.719
NZ_CP028122_2	2.12\|3130108\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3130108-3130139	32	NC_014309	Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome	1494540-1494571	9	0.719
NZ_CP028122_2	2.12\|3130108\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3130108-3130139	32	NZ_CP021653	Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence	1451783-1451814	9	0.719
NZ_CP028122_2	2.12\|3130108\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3130108-3130139	32	NC_014310	Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence	1410266-1410297	9	0.719
NZ_CP028122_2	2.12\|3130108\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3130108-3130139	32	NZ_CP006989	Rhizobium sp. IE4771 plasmid pRetIE4771c, complete sequence	164878-164909	9	0.719
NZ_CP028122_2	2.12\|3130108\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3130108-3130139	32	NZ_CP026093	Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence	997339-997370	9	0.719
NZ_CP028122_2	2.12\|3130108\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3130108-3130139	32	NZ_CP021767	Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence	1451750-1451781	9	0.719
NZ_CP028122_2	2.12\|3130108\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3130108-3130139	32	NZ_CP012940	Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence	1191260-1191291	9	0.719
NZ_CP028122_2	2.12\|3130108\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3130108-3130139	32	NZ_CP012944	Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence	651651-651682	9	0.719
NZ_CP028122_2	2.12\|3130108\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3130108-3130139	32	NZ_CP012688	Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence	1451790-1451821	9	0.719
NZ_CP028122_2	2.12\|3130108\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3130108-3130139	32	NZ_CP022760	Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence	1317649-1317680	9	0.719
NZ_CP028122_2	2.12\|3130108\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3130108-3130139	32	NZ_CP022789	Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence	1317640-1317671	9	0.719
NZ_CP028122_2	2.12\|3130108\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3130108-3130139	32	NC_017575	Ralstonia solanacearum Po82 megaplasmid, complete sequence	997051-997082	9	0.719
NZ_CP028122_2	2.12\|3130108\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3130108-3130139	32	NZ_CP026308	Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence	996997-997028	9	0.719
NZ_CP028122_2	2.12\|3130108\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3130108-3130139	32	NZ_CP051295	Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence	1179712-1179743	9	0.719
NZ_CP028122_2	2.12\|3130108\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3130108-3130139	32	NZ_CP022764	Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence	1354318-1354349	9	0.719
NZ_CP028122_2	2.12\|3130108\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3130108-3130139	32	NZ_CP022797	Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence	1354299-1354330	9	0.719
NZ_CP028122_2	2.12\|3130108\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3130108-3130139	32	NZ_CP022758	Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence	1354285-1354316	9	0.719
NZ_CP028122_3	3.6\|3156349\|32\|NZ_CP028122\|CRISPRCasFinder,CRT	3156349-3156380	32	AP021850	Deinococcus grandis ATCC 43672 plasmid: pDEGR-1 DNA, complete genome	302507-302538	9	0.719
NZ_CP028122_3	3.12\|3156350\|32\|NZ_CP028122\|PILER-CR	3156350-3156381	32	AP021850	Deinococcus grandis ATCC 43672 plasmid: pDEGR-1 DNA, complete genome	302507-302538	9	0.719
NZ_CP028122_5	5.1\|4943480\|52\|NZ_CP028122\|CRISPRCasFinder	4943480-4943531	52	MT230402	Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence	272-323	9	0.827
NZ_CP028122_5	5.1\|4943480\|52\|NZ_CP028122\|CRISPRCasFinder	4943480-4943531	52	NZ_AP023207	Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence	31252-31303	9	0.827
NZ_CP028122_2	2.4\|3129620\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3129620-3129651	32	NZ_CP025433	Paracoccus zhejiangensis strain J6 plasmid pPZ03, complete sequence	97047-97078	10	0.688
NZ_CP028122_2	2.12\|3130108\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3130108-3130139	32	NZ_CP013110	Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence	26938-26969	10	0.688
NZ_CP028122_2	2.12\|3130108\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3130108-3130139	32	NZ_CP024310	Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence	20330-20361	10	0.688
NZ_CP028122_2	2.12\|3130108\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3130108-3130139	32	NZ_CP013054	Sinorhizobium americanum CCGM7 plasmid C, complete sequence	24766-24797	10	0.688
NZ_CP028122_2	2.12\|3130108\|32\|NZ_CP028122\|PILER-CR,CRISPRCasFinder,CRT	3130108-3130139	32	NZ_CP023064	Sinorhizobium sp. CCBAU 05631 plasmid pSS05631b, complete sequence	24015-24046	10	0.688
NZ_CP028122_5	5.1\|4943480\|52\|NZ_CP028122\|CRISPRCasFinder	4943480-4943531	52	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	12113-12164	10	0.808
NZ_CP028122_5	5.1\|4943480\|52\|NZ_CP028122\|CRISPRCasFinder	4943480-4943531	52	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	87119-87170	10	0.808
NZ_CP028122_5	5.1\|4943480\|52\|NZ_CP028122\|CRISPRCasFinder	4943480-4943531	52	MT230312	Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence	152-203	11	0.788
NZ_CP028122_5	5.1\|4943480\|52\|NZ_CP028122\|CRISPRCasFinder	4943480-4943531	52	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	3373-3424	12	0.769
NZ_CP028122_5	5.1\|4943480\|52\|NZ_CP028122\|CRISPRCasFinder	4943480-4943531	52	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	44-95	12	0.769
NZ_CP028122_5	5.1\|4943480\|52\|NZ_CP028122\|CRISPRCasFinder	4943480-4943531	52	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	3372-3423	12	0.769
NZ_CP028122_5	5.1\|4943480\|52\|NZ_CP028122\|CRISPRCasFinder	4943480-4943531	52	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	43-94	12	0.769
NZ_CP028122_5	5.1\|4943480\|52\|NZ_CP028122\|CRISPRCasFinder	4943480-4943531	52	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	3372-3423	12	0.769
NZ_CP028122_5	5.1\|4943480\|52\|NZ_CP028122\|CRISPRCasFinder	4943480-4943531	52	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	43-94	12	0.769
NZ_CP028122_5	5.1\|4943480\|52\|NZ_CP028122\|CRISPRCasFinder	4943480-4943531	52	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	3372-3423	12	0.769
NZ_CP028122_5	5.1\|4943480\|52\|NZ_CP028122\|CRISPRCasFinder	4943480-4943531	52	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	43-94	12	0.769
NZ_CP028122_5	5.1\|4943480\|52\|NZ_CP028122\|CRISPRCasFinder	4943480-4943531	52	NZ_CP044307	Escherichia coli strain C27A plasmid pC27A-2, complete sequence	15000-15051	12	0.769
NZ_CP028122_5	5.1\|4943480\|52\|NZ_CP028122\|CRISPRCasFinder	4943480-4943531	52	NZ_CP044307	Escherichia coli strain C27A plasmid pC27A-2, complete sequence	18332-18383	12	0.769
NZ_CP028122_5	5.1\|4943480\|52\|NZ_CP028122\|CRISPRCasFinder	4943480-4943531	52	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	4115-4166	13	0.75
NZ_CP028122_5	5.1\|4943480\|52\|NZ_CP028122\|CRISPRCasFinder	4943480-4943531	52	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	4114-4165	13	0.75
NZ_CP028122_5	5.1\|4943480\|52\|NZ_CP028122\|CRISPRCasFinder	4943480-4943531	52	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	4114-4165	13	0.75
NZ_CP028122_5	5.1\|4943480\|52\|NZ_CP028122\|CRISPRCasFinder	4943480-4943531	52	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	4114-4165	13	0.75
NZ_CP028122_5	5.1\|4943480\|52\|NZ_CP028122\|CRISPRCasFinder	4943480-4943531	52	NZ_AP023209	Escherichia coli strain TUM18781 plasmid pMTY18781-4, complete sequence	70-121	13	0.75
NZ_CP028122_5	5.1\|4943480\|52\|NZ_CP028122\|CRISPRCasFinder	4943480-4943531	52	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	208982-209033	14	0.731
NZ_CP028122_5	5.1\|4943480\|52\|NZ_CP028122\|CRISPRCasFinder	4943480-4943531	52	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	219476-219527	14	0.731
NZ_CP028122_5	5.1\|4943480\|52\|NZ_CP028122\|CRISPRCasFinder	4943480-4943531	52	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	210310-210361	14	0.731
NZ_CP028122_5	5.1\|4943480\|52\|NZ_CP028122\|CRISPRCasFinder	4943480-4943531	52	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	191265-191316	14	0.731
NZ_CP028122_5	5.1\|4943480\|52\|NZ_CP028122\|CRISPRCasFinder	4943480-4943531	52	NZ_CP010208	Escherichia coli strain M11 plasmid B, complete sequence	30159-30210	14	0.731
NZ_CP028122_5	5.1\|4943480\|52\|NZ_CP028122\|CRISPRCasFinder	4943480-4943531	52	NZ_CP044147	Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2	7393-7444	15	0.712
NZ_CP028122_5	5.1\|4943480\|52\|NZ_CP028122\|CRISPRCasFinder	4943480-4943531	52	CP044351	Escherichia coli strain 194195 plasmid p194195_1, complete sequence	84217-84268	15	0.712

1. spacer 3.2|3156105|32|NZ_CP028122|CRISPRCasFinder,CRT matches to MT330372 (Cronobacter phage JC01, complete genome) position: , mismatch: 1, identity: 0.969

tccgtccaccctgatagccgcccttgtgatcc	CRISPR spacer
tccgtcctccctgatagccgcccttgtgatcc	Protospacer
******* ************************

2. spacer 3.8|3156106|32|NZ_CP028122|PILER-CR matches to MT330372 (Cronobacter phage JC01, complete genome) position: , mismatch: 1, identity: 0.969

tccgtccaccctgatagccgcccttgtgatcc	CRISPR spacer
tccgtcctccctgatagccgcccttgtgatcc	Protospacer
******* ************************

3. spacer 2.1|3129437|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050442 (Tolypothrix sp. PCC 7910 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.812

aaaaccaaacttctccataaattccatagccg	CRISPR spacer
attactaaacttctgcataaattccataggag	Protospacer
*  **.******** **************  *

4. spacer 2.5|3129681|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013381 (Burkholderia sp. Bp5365 strain MSMB43 plasmid pMSMB43, complete sequence) position: , mismatch: 6, identity: 0.812

ctgccgac--tgaccgccgacgctttcgcgttaa	CRISPR spacer
--gccggcggtgaccgccggcgctttcgggttag	Protospacer
  ****.*  *********.******** ****.

5. spacer 2.5|3129681|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009547 (Burkholderia sp. 2002721687 plasmid pBTU, complete sequence) position: , mismatch: 6, identity: 0.812

ctgccgac--tgaccgccgacgctttcgcgttaa	CRISPR spacer
--gccggcggtgaccgccggcgctttcgggttag	Protospacer
  ****.*  *********.******** ****.

6. spacer 2.11|3130047|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NC_048766 (Pantoea phage vB_PagM_AAM37, complete genome) position: , mismatch: 6, identity: 0.812

atccac-atttccgccgttatgaatcggtattc	CRISPR spacer
-tgcgcggtatccgccgtgatgaatcggtattc	Protospacer
 * *.* .* ******** **************

7. spacer 2.2|3129498|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to AP014324 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S33-C64, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.781

aactggat-tctgctctaattattacatcatcg	CRISPR spacer
-tttgtatatctgctctaatagttacatcatca	Protospacer
  .** ** *********** .**********.

8. spacer 2.5|3129681|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043960 (Streptomyces tendae strain 139 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

ctgccgactgaccgccgacgctttcgcgttaa	CRISPR spacer
cggccgcctgaccgccgacgctgtcgcaggac	Protospacer
* **** *************** ****.  *

9. spacer 2.11|3130047|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to MK095606 (Pantoea phage vB_PagS_AAS23, complete genome) position: , mismatch: 7, identity: 0.781

atccac-atttccgccgttatgaatcggtattc	CRISPR spacer
-tgggcggtatccgccgttatgaatcggtaatc	Protospacer
 *  .* .* ******************** **

10. spacer 2.11|3130047|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to MG732930 (Enterobacter phage Ec_L1, complete genome) position: , mismatch: 7, identity: 0.781

--atccacatttccgccgttatgaatcggtattc	CRISPR spacer
tgagcggta--tccgccgttatgaatcggtactc	Protospacer
  * * ..*  ********************.**

11. spacer 2.2|3129498|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014218 (Clostridium botulinum strain B515 plasmid pRSJ21_3, complete sequence) position: , mismatch: 8, identity: 0.75

aactgga---ttctgctctaattattacatcatcg	CRISPR spacer
---cagatccttctgctttaattgttacatcatct	Protospacer
   ..**   *******.*****.**********

12. spacer 2.2|3129498|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014173 (Clostridium botulinum strain B609 plasmid pRSJ22_2, complete sequence) position: , mismatch: 8, identity: 0.75

aactgga---ttctgctctaattattacatcatcg	CRISPR spacer
---cagatccttctgctttaattgttacatcatct	Protospacer
   ..**   *******.*****.**********

13. spacer 2.4|3129620|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to CP023013 (Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
accagcagcgtgcaggctggcgcccgatcctc	Protospacer
 * . ****** *********.****** .**

14. spacer 2.4|3129620|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023017 (Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
accagcagcgtgcaggctggcgcccgatcctc	Protospacer
 * . ****** *********.****** .**

15. spacer 2.4|3129620|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015851 (Ralstonia solanacearum strain YC40-M plasmid, complete sequence) position: , mismatch: 8, identity: 0.75

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
accagcagcgtgcaggctggcgcccgatcctc	Protospacer
 * . ****** *********.****** .**

16. spacer 2.4|3129620|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022783 (Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
accagcagcgtgcaggctggcgcccgatcctc	Protospacer
 * . ****** *********.****** .**

17. spacer 2.4|3129620|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022795 (Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
accagcagcgtgcaggctggcgcccgatcctc	Protospacer
 * . ****** *********.****** .**

18. spacer 2.4|3129620|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to CP023015 (Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
accagcagcgtgcaggctggcgcccgatcctc	Protospacer
 * . ****** *********.****** .**

19. spacer 2.4|3129620|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052077 (Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
accagcagcgtgcaggctggcgcccgatcctc	Protospacer
 * . ****** *********.****** .**

20. spacer 2.4|3129620|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052079 (Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
accagcagcgtgcaggctggcgcccgatcctc	Protospacer
 * . ****** *********.****** .**

21. spacer 2.4|3129620|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052125 (Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
accagcagcgtgcaggctggcgcccgatcctc	Protospacer
 * . ****** *********.****** .**

22. spacer 2.4|3129620|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052123 (Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
accagcagcgtgcaggctggcgcccgatcctc	Protospacer
 * . ****** *********.****** .**

23. spacer 2.4|3129620|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052081 (Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
accagcagcgtgcaggctggcgcccgatcctc	Protospacer
 * . ****** *********.****** .**

24. spacer 2.4|3129620|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052083 (Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
accagcagcgtgcaggctggcgcccgatcctc	Protospacer
 * . ****** *********.****** .**

25. spacer 2.11|3130047|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to JN022534 (Xanthomonas phage vB_XveM_DIBBI, complete genome) position: , mismatch: 8, identity: 0.75

--atccacatttccgccgttatgaatcggtattc	CRISPR spacer
tgagcggta--tccgccgtgatgaatcggtactc	Protospacer
  * * ..*  ******** ***********.**

26. spacer 2.12|3130108|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043499 (Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
caccgcccagattgctgcgctgacgtcgtctc	Protospacer
* *   **** *********** ******* .

27. spacer 2.12|3130108|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022762 (Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
cccctgcctgtttgctgcgctgcgaaaatcgg	Protospacer
*** **** ************** .  .***

28. spacer 2.12|3130108|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023017 (Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
cccctgcctgtttgctgcgctgcgaaaatcgg	Protospacer
*** **** ************** .  .***

29. spacer 2.12|3130108|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014703 (Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence) position: , mismatch: 8, identity: 0.75

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
cccctgcctgtttgctgcgctgcgaaaatcgg	Protospacer
*** **** ************** .  .***

30. spacer 2.12|3130108|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022771 (Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
cccctgcctgtttgctgcgctgcgaaaatcgg	Protospacer
*** **** ************** .  .***

31. spacer 2.12|3130108|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022777 (Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
cccctgcctgtttgctgcgctgcgaaaatcgg	Protospacer
*** **** ************** .  .***

32. spacer 2.12|3130108|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022799 (Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
cccctgcctgtttgctgcgctgcgaaaatcgg	Protospacer
*** **** ************** .  .***

33. spacer 2.14|3130230|32|NZ_CP028122|CRISPRCasFinder,CRT matches to KU160664 (Arthrobacter phage Salgado, complete genome) position: , mismatch: 8, identity: 0.75

gctgaggctgtcaggagccagtgcggcagagg	CRISPR spacer
gatgacgctgtcaggagccagttcgggatcat	Protospacer
* *** **************** *** *  .

34. spacer 2.14|3130230|32|NZ_CP028122|CRISPRCasFinder,CRT matches to MF140418 (Arthrobacter phage LiSara, complete genome) position: , mismatch: 8, identity: 0.75

gctgaggctgtcaggagccagtgcggcagagg	CRISPR spacer
gatgacgctgtcaggagccagttcgggatcat	Protospacer
* *** **************** *** *  .

35. spacer 3.4|3156227|32|NZ_CP028122|CRISPRCasFinder,CRT matches to NZ_CP010769 (Phaeobacter piscinae strain P13 plasmid pP13_b, complete sequence) position: , mismatch: 8, identity: 0.75

gcgggcgttaacgcggtgatactgtttgacgg	CRISPR spacer
ttgatcgttaacgcgatgctactgtttgtggg	Protospacer
 .*. **********.** *********  **

36. spacer 3.10|3156228|32|NZ_CP028122|PILER-CR matches to NZ_CP010769 (Phaeobacter piscinae strain P13 plasmid pP13_b, complete sequence) position: , mismatch: 8, identity: 0.75

gcgggcgttaacgcggtgatactgtttgacgg	CRISPR spacer
ttgatcgttaacgcgatgctactgtttgtggg	Protospacer
 .*. **********.** *********  **

37. spacer 2.2|3129498|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to MN856013 (Myoviridae sp. isolate 131, complete genome) position: , mismatch: 9, identity: 0.719

aactggattctgctctaattattacatcatcg	CRISPR spacer
tgccgatttctgctgtaatttttacatcattt	Protospacer
 .*.*. ******* ***** *********.

38. spacer 2.4|3129620|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019604 (Croceicoccus marinus strain E4A9 plasmid pCME4A9II, complete sequence) position: , mismatch: 9, identity: 0.719

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
gcgcgacacgtccaggctgccacccgatgttg	Protospacer
 **    .*********** ********.**

39. spacer 2.4|3129620|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025432 (Paracoccus zhejiangensis strain J6 plasmid pPZ02, complete sequence) position: , mismatch: 9, identity: 0.719

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
atggccagcatcgaggctggcaccccggtttg	Protospacer
 .*******.** ************ .  **

40. spacer 2.4|3129620|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to AY526908 (Bordetella phage BMP-1, complete genome) position: , mismatch: 9, identity: 0.719

tcggccagcgtccaggctggcacccgatattc----	CRISPR spacer
acggccagcatcaaggctggcacc----atcgtgga	Protospacer
 ********.** ***********    **.

41. spacer 2.4|3129620|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NC_005357 (Bordetella phage BPP-1, complete genome) position: , mismatch: 9, identity: 0.719

tcggccagcgtccaggctggcacccgatattc----	CRISPR spacer
acggccagcatcaaggctggcacc----atcgtgga	Protospacer
 ********.** ***********    **.

42. spacer 2.4|3129620|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to AY526909 (Bordetella phage BIP-1, complete genome) position: , mismatch: 9, identity: 0.719

tcggccagcgtccaggctggcacccgatattc----	CRISPR spacer
acggccagcatcaaggctggcacc----atcgtgga	Protospacer
 ********.** ***********    **.

43. spacer 2.12|3130108|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022775 (Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
cccctgcctgtttgctgcgctgcgaaaatccg	Protospacer
*** **** ************** .  .**

44. spacer 2.12|3130108|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026091 (Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
cccctgcctgtttgctgcgctgcgccaatccg	Protospacer
*** **** **************  . .**

45. spacer 2.12|3130108|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NC_014309 (Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome) position: , mismatch: 9, identity: 0.719

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
cccctgcctgtttgctgcgctgcgccaatccg	Protospacer
*** **** **************  . .**

46. spacer 2.12|3130108|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
cccctgcctgtttgctgcgctgcgccaatccg	Protospacer
*** **** **************  . .**

47. spacer 2.12|3130108|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NC_014310 (Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence) position: , mismatch: 9, identity: 0.719

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
cccctgcctgtttgctgcgctgcgaaaatccg	Protospacer
*** **** ************** .  .**

48. spacer 2.12|3130108|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006989 (Rhizobium sp. IE4771 plasmid pRetIE4771c, complete sequence) position: , mismatch: 9, identity: 0.719

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
agcgagccagtttgctccgctgccgatctccc	Protospacer
  ** *********** ******** . ** .

49. spacer 2.12|3130108|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026093 (Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
cccctgcctgtttgctgcgctgcgccaatccg	Protospacer
*** **** **************  . .**

50. spacer 2.12|3130108|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021767 (Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
cccctgcctgtttgctgcgctgcgccaatccg	Protospacer
*** **** **************  . .**

51. spacer 2.12|3130108|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012940 (Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
cccctgcctgtttgctgcgctgcgccaatccg	Protospacer
*** **** **************  . .**

52. spacer 2.12|3130108|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012944 (Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
cccctgcctgtttgctgcgctgcgccaatccg	Protospacer
*** **** **************  . .**

53. spacer 2.12|3130108|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
cccctgcctgtttgctgcgctgcgccaatccg	Protospacer
*** **** **************  . .**

54. spacer 2.12|3130108|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022760 (Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
cccttgcctgtttgctgcgctgcgaaaatccg	Protospacer
*** **** ************** .  .**

55. spacer 2.12|3130108|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022789 (Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
cccttgcctgtttgctgcgctgcgaaaatccg	Protospacer
*** **** ************** .  .**

56. spacer 2.12|3130108|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NC_017575 (Ralstonia solanacearum Po82 megaplasmid, complete sequence) position: , mismatch: 9, identity: 0.719

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
cccctgcctgtttgctgcgctgcgccaatccg	Protospacer
*** **** **************  . .**

57. spacer 2.12|3130108|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026308 (Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
cccctgcctgtttgctgcgctgcgccaatccg	Protospacer
*** **** **************  . .**

58. spacer 2.12|3130108|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP051295 (Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence) position: , mismatch: 9, identity: 0.719

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
cccctgcctgtttgctgcgctgcgccaatccg	Protospacer
*** **** **************  . .**

59. spacer 2.12|3130108|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022764 (Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
cccctgcctgtttgctgcgctgcgaaaatccg	Protospacer
*** **** ************** .  .**

60. spacer 2.12|3130108|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022797 (Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
cccctgcctgtttgctgcgctgcgaaaatccg	Protospacer
*** **** ************** .  .**

61. spacer 2.12|3130108|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022758 (Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
cccctgcctgtttgctgcgctgcgaaaatccg	Protospacer
*** **** ************** .  .**

62. spacer 3.6|3156349|32|NZ_CP028122|CRISPRCasFinder,CRT matches to AP021850 (Deinococcus grandis ATCC 43672 plasmid: pDEGR-1 DNA, complete genome) position: , mismatch: 9, identity: 0.719

ggtgaatactgcggcaggcgctgcgggaattg	CRISPR spacer
gcgccatgctgcgtcaggcgctgcgggacctc	Protospacer
*    **.***** ************** .*

63. spacer 3.12|3156350|32|NZ_CP028122|PILER-CR matches to AP021850 (Deinococcus grandis ATCC 43672 plasmid: pDEGR-1 DNA, complete genome) position: , mismatch: 9, identity: 0.719

ggtgaatactgcggcaggcgctgcgggaattg	CRISPR spacer
gcgccatgctgcgtcaggcgctgcgggacctc	Protospacer
*    **.***** ************** .*

64. spacer 5.1|4943480|52|NZ_CP028122|CRISPRCasFinder matches to MT230402 (Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence) position: , mismatch: 9, identity: 0.827

gcattgcctgatgcgacgctgccgcgtcttatcaggcctacgagttcggtgc-	CRISPR spacer
tcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaaa-ccgttacc	Protospacer
 ** *****************.*******************.*. .** *.*

65. spacer 5.1|4943480|52|NZ_CP028122|CRISPRCasFinder matches to NZ_AP023207 (Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence) position: , mismatch: 9, identity: 0.827

gcattgcctgatgcgacgctgccgcgtcttatcaggcctacgagttcggtgc--	CRISPR spacer
tcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacag--ccgttgcca	Protospacer
 ** *****************.*******************..  .** ***

66. spacer 2.4|3129620|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025433 (Paracoccus zhejiangensis strain J6 plasmid pPZ03, complete sequence) position: , mismatch: 10, identity: 0.688

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
atggccagcatcgaggctggcaccccggtctg	Protospacer
 .*******.** ************ .  .*

67. spacer 2.12|3130108|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013110 (Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence) position: , mismatch: 10, identity: 0.688

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
cgtacagcagtttgctgcacagccgtcgtcag	Protospacer
* .... ***********.* *********.

68. spacer 2.12|3130108|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024310 (Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence) position: , mismatch: 10, identity: 0.688

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
cgtacagcagtttgctgcacagccgtcgtcag	Protospacer
* .... ***********.* *********.

69. spacer 2.12|3130108|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013054 (Sinorhizobium americanum CCGM7 plasmid C, complete sequence) position: , mismatch: 10, identity: 0.688

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
cgtacagcagtttgctgcacagccgtcgtcag	Protospacer
* .... ***********.* *********.

70. spacer 2.12|3130108|32|NZ_CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023064 (Sinorhizobium sp. CCBAU 05631 plasmid pSS05631b, complete sequence) position: , mismatch: 10, identity: 0.688

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
cgtacagcagtttgctgcacagccgtcgtcaa	Protospacer
* .... ***********.* *********.

71. spacer 5.1|4943480|52|NZ_CP028122|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 10, identity: 0.808

gcattgcctgatgcgacgctgccgcgtcttatcaggcctacgagttcggtgc	CRISPR spacer
tcggtgcctgatgcgacgctggcgcgtcttatcaggcctacgagtcgcccgt	Protospacer
 *. ***************** ***********************.   .*.

72. spacer 5.1|4943480|52|NZ_CP028122|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 10, identity: 0.808

gcattgcctgatgcgacgctgccgcgtcttatcaggcctacgagttcggtgc	CRISPR spacer
acgatgcctgatgcgacgctgccgcgtcttatcaggcctacaaaatcaatcg	Protospacer
.*. *************************************.*. **..*

73. spacer 5.1|4943480|52|NZ_CP028122|CRISPRCasFinder matches to MT230312 (Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence) position: , mismatch: 11, identity: 0.788

gcattgcctgatgcgacgctgccgcgtcttatcaggcctacgagttcggtgc	CRISPR spacer
ttgaagcctgatgcgacgctgacgcgtcttatcaggcctacnagacccgagc	Protospacer
 ..  **************** ******************* ** .* * **

74. spacer 5.1|4943480|52|NZ_CP028122|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.769

gcattgcctgatgcgacgctgccgcgtcttatcaggcctacgagttcggtgc	CRISPR spacer
caggtgcctgatgcgacgctggcgcgtcttatcatgcctacgagcccgcgaa	Protospacer
  . ***************** ************ *********..**  .

75. spacer 5.1|4943480|52|NZ_CP028122|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.769

gcattgcctgatgcgacgctgccgcgtcttatcaggcctacgagttcggtgc-	CRISPR spacer
ctgatgcctgatgcgacgctgacgcgtcttatcatgcctacaaatct-gtacg	Protospacer
 .. ***************** ************ ******.*.*.. **.*

76. spacer 5.1|4943480|52|NZ_CP028122|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.769

gcattgcctgatgcgacgctgccgcgtcttatcaggcctacgagttcggtgc	CRISPR spacer
caggtgcctgatgcgacgctggcgcgtcttatcatgcctacgagcccgcgaa	Protospacer
  . ***************** ************ *********..**  .

77. spacer 5.1|4943480|52|NZ_CP028122|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.769

gcattgcctgatgcgacgctgccgcgtcttatcaggcctacgagttcggtgc-	CRISPR spacer
ctgatgcctgatgcgacgctgacgcgtcttatcatgcctacaaatct-gtacg	Protospacer
 .. ***************** ************ ******.*.*.. **.*

78. spacer 5.1|4943480|52|NZ_CP028122|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.769

gcattgcctgatgcgacgctgccgcgtcttatcaggcctacgagttcggtgc	CRISPR spacer
caggtgcctgatgcgacgctggcgcgtcttatcatgcctacgagcccgcgaa	Protospacer
  . ***************** ************ *********..**  .

79. spacer 5.1|4943480|52|NZ_CP028122|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.769

gcattgcctgatgcgacgctgccgcgtcttatcaggcctacgagttcggtgc-	CRISPR spacer
ctgatgcctgatgcgacgctgacgcgtcttatcatgcctacaaatct-gtacg	Protospacer
 .. ***************** ************ ******.*.*.. **.*

80. spacer 5.1|4943480|52|NZ_CP028122|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.769

gcattgcctgatgcgacgctgccgcgtcttatcaggcctacgagttcggtgc	CRISPR spacer
caggtgcctgatgcgacgctggcgcgtcttatcatgcctacgagcccgcgaa	Protospacer
  . ***************** ************ *********..**  .

81. spacer 5.1|4943480|52|NZ_CP028122|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.769

gcattgcctgatgcgacgctgccgcgtcttatcaggcctacgagttcggtgc-	CRISPR spacer
ctgatgcctgatgcgacgctgacgcgtcttatcatgcctacaaatct-gtacg	Protospacer
 .. ***************** ************ ******.*.*.. **.*

82. spacer 5.1|4943480|52|NZ_CP028122|CRISPRCasFinder matches to NZ_CP044307 (Escherichia coli strain C27A plasmid pC27A-2, complete sequence) position: , mismatch: 12, identity: 0.769

gcattgcctgatgcgacgctgccgcgtcttatcaggcctacgagttcggtgc	CRISPR spacer
caggtgcctgatgcgacgctggcgcgtcttatcatgcctacgagcccgcgaa	Protospacer
  . ***************** ************ *********..**  .

83. spacer 5.1|4943480|52|NZ_CP028122|CRISPRCasFinder matches to NZ_CP044307 (Escherichia coli strain C27A plasmid pC27A-2, complete sequence) position: , mismatch: 12, identity: 0.769

gcattgcctgatgcgacgctgccgcgtcttatcaggcctacgagttcggtgc-	CRISPR spacer
ctgatgcctgatgcgacgctgacgcgtcttatcatgcctacaaatct-gtacg	Protospacer
 .. ***************** ************ ******.*.*.. **.*

84. spacer 5.1|4943480|52|NZ_CP028122|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 13, identity: 0.75

gcattgcctgatgcgacgctgccgcgtcttatcaggcctacgagttcggtgc	CRISPR spacer
cagatgcctgatgcgacgctggcgcgtcttatcatgcctacaaacttgtgcc	Protospacer
  . ***************** ************ ******.*..*.*   *

85. spacer 5.1|4943480|52|NZ_CP028122|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 13, identity: 0.75

gcattgcctgatgcgacgctgccgcgtcttatcaggcctacgagttcggtgc	CRISPR spacer
cagatgcctgatgcgacgctggcgcgtcttatcatgcctacaaacttgtgcc	Protospacer
  . ***************** ************ ******.*..*.*   *

86. spacer 5.1|4943480|52|NZ_CP028122|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 13, identity: 0.75

gcattgcctgatgcgacgctgccgcgtcttatcaggcctacgagttcggtgc	CRISPR spacer
cagatgcctgatgcgacgctggcgcgtcttatcatgcctacaaacttgtgcc	Protospacer
  . ***************** ************ ******.*..*.*   *

87. spacer 5.1|4943480|52|NZ_CP028122|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 13, identity: 0.75

gcattgcctgatgcgacgctgccgcgtcttatcaggcctacgagttcggtgc	CRISPR spacer
cagatgcctgatgcgacgctggcgcgtcttatcatgcctacaaacttgtgcc	Protospacer
  . ***************** ************ ******.*..*.*   *

88. spacer 5.1|4943480|52|NZ_CP028122|CRISPRCasFinder matches to NZ_AP023209 (Escherichia coli strain TUM18781 plasmid pMTY18781-4, complete sequence) position: , mismatch: 13, identity: 0.75

gcattgcctgatgcgacgctgccgcgtcttatcaggcctacgagttcggtgc	CRISPR spacer
ccgatgcctgatgcgacgctgacgcgtcttatcatgcctacggacctgaacc	Protospacer
 *. ***************** ************ *******.....*.  *

89. spacer 5.1|4943480|52|NZ_CP028122|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 14, identity: 0.731

gcattgcctgatgcgacgctgccgcgtcttatcaggcctacgagttcggtgc	CRISPR spacer
cagatgcctgatgcgacgctgacgcgtcttatcaggcctacccactgttttt	Protospacer
  . ***************** *******************  ..*   * .

90. spacer 5.1|4943480|52|NZ_CP028122|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 14, identity: 0.731

gcattgcctgatgcgacgctgccgcgtcttatcaggcctacgagttcggtgc	CRISPR spacer
cagatgcctgatgcgacgctgacgcgtcttatcaggcctacccactgttttt	Protospacer
  . ***************** *******************  ..*   * .

91. spacer 5.1|4943480|52|NZ_CP028122|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 14, identity: 0.731

gcattgcctgatgcgacgctgccgcgtcttatcaggcctacgagttcggtgc	CRISPR spacer
cagatgcctgatgcgacgctgacgcgtcttatcaggcctacccactgttttt	Protospacer
  . ***************** *******************  ..*   * .

92. spacer 5.1|4943480|52|NZ_CP028122|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 14, identity: 0.731

gcattgcctgatgcgacgctgccgcgtcttatcaggcctacgagttcggtgc	CRISPR spacer
cagatgcctgatgcgacgctgacgcgtcttatcaggcctacccactgttttt	Protospacer
  . ***************** *******************  ..*   * .

93. spacer 5.1|4943480|52|NZ_CP028122|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 14, identity: 0.731

gcattgcctgatgcgacgctgccgcgtcttatcaggcctacgagttcggtgc	CRISPR spacer
ctgatgcctgatgcgacgctgacgcgtcttatcatgcctacaatctgcaccc	Protospacer
 .. ***************** ************ ******.* .*  .. *

94. spacer 5.1|4943480|52|NZ_CP028122|CRISPRCasFinder matches to NZ_CP044147 (Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2) position: , mismatch: 15, identity: 0.712

gcattgcctgatgcgacgctgccgcgtcttatcaggcctacgagttcggtgc	CRISPR spacer
cggatgcctgatgcgacgctggcgcgtcttatcatgcctacaaaactgcact	Protospacer
  . ***************** ************ ******.*. ..*   .

95. spacer 5.1|4943480|52|NZ_CP028122|CRISPRCasFinder matches to CP044351 (Escherichia coli strain 194195 plasmid p194195_1, complete sequence) position: , mismatch: 15, identity: 0.712

gcattgcctgatgcgacgctgccgcgtcttatcaggcctacgagttcggtgc	CRISPR spacer
cggatgcctgatgcgacgctggcgcgtcttatcatgcctacaaaactgcact	Protospacer
  . ***************** ************ ******.*. ..*   .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

198427 : 260601

Emiliania_huxleyi_virus(12.5%)

plate,protease,tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001325807.1\|198427_199780_+\|protease	sigma E protease regulator RseP	NA	NA	NA	NA
WP_021542017.1\|199809_202242_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_000758956.1\|202363_202849_+	molecular chaperone Skp	NA	NA	NA	NA
WP_001139279.1\|202852_203878_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_000210739.1\|203982_204438_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_000565966.1\|204441_205230_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_000139659.1\|205229_206378_+	lipid-A-disaccharide synthase	NA	NA	NA	NA
WP_000569430.1\|206374_206971_+	ribonuclease HII	V5LS49	Emiliania_huxleyi_virus	1.0e-26	40.0
WP_001294774.1\|207007_210490_+	DNA polymerase III subunit alpha	Q8W6C3	Saccharomonospora_phage	2.2e-209	36.9
WP_000055741.1\|210502_211462_+	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA
WP_001020973.1\|211560_213702_+	lysine decarboxylase LdcC	NA	NA	NA	NA
WP_000901098.1\|213758_214148_+	VOC family protein	NA	NA	NA	NA
WP_108942234.1\|214212_215511_+\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_000062312.1\|215559_215820_-	Rho-binding antiterminator	NA	NA	NA	NA
WP_108942236.1\|215806_216007_-	YaeP family protein	NA	NA	NA	NA
WP_001185293.1\|216172_216718_+	YaeQ family protein	NA	NA	NA	NA
WP_000635545.1\|216714_217137_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_000239192.1\|217150_217861_+	envelope stress response activation lipoprotein NlpE	NA	NA	NA	NA
WP_108942238.1\|218110_219091_+\|transposase	IS110-like element IS621 family transposase	NA	NA	NA	NA
WP_001346133.1\|219293_220118_-	YaeF family permuted papain-like enzyme	NA	NA	NA	NA
WP_001260716.1\|220170_221889_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_000094011.1\|221999_222707_-\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
WP_001202329.1\|222703_223108_-	Rcs stress response system protein RcsF	NA	NA	NA	NA
WP_000874224.1\|223225_224041_-	methionine ABC transporter substrate-binding lipoprotein MetQ	NA	NA	NA	NA
WP_001294600.1\|224080_224734_-	methionine ABC transporter permease MetI	NA	NA	NA	NA
WP_000593994.1\|224726_225758_-	methionine ABC transporter ATP-binding protein MetN	G9BWD6	Planktothrix_phage	7.2e-36	40.2
WP_001140186.1\|225945_226518_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA
WP_000997037.1\|232264_233068_+	2,5-didehydrogluconate reductase DkgB	A0A1V0SDE7	Indivirus	1.6e-38	36.1
WP_000648576.1\|233064_233979_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_001230983.1\|234219_235020_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_000211726.1\|235097_235868_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000644685.1\|235915_237274_-	murein transglycosylase D	A0A2H4J9N7	uncultured_Caudovirales_phage	5.8e-09	36.0
WP_001052720.1\|237345_238101_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
WP_001297210.1\|238134_238857_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000917883.1\|238853_239321_-	ribonuclease HI	J9Q745	Salmonella_phage	1.0e-50	58.7
WP_001297205.1\|239385_240117_+	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	3.4e-40	39.0
WP_001086142.1\|240652_241438_+	aminopeptidase	NA	NA	NA	NA
WP_001236649.1\|241574_242054_-	hypothetical protein	NA	NA	NA	NA
WP_000908057.1\|242063_242978_-	hypothetical protein	NA	NA	NA	NA
WP_001284199.1\|243021_243504_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_000377958.1\|243527_244880_-	membrane protein	NA	NA	NA	NA
WP_122985795.1\|244890_248325_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_001240543.1\|248433_249849_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_000088873.1\|249853_250597_-	type VI secretion system-associated protein TagO	NA	NA	NA	NA
WP_001583146.1\|250593_253353_-	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	9.4e-83	30.7
WP_000343302.1\|253361_254123_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_000246437.1\|254127_255459_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_001080149.1\|255461_255986_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_021542025.1\|255982_257263_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_000348793.1\|257287_258370_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_108942240.1\|258333_260184_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_000611742.1\|260187_260601_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA

DBSCAN-SWA_2

564334 : 627476

Enterobacteria_phage(44.23%)

tRNA,terminase,integrase,protease,transposase,capsid,head,tail,lysis,portal

attL 574496:574542|attR 618950:618996

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000912345.1\|564334_565720_+\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.9e-45	34.8
WP_001143552.1\|565755_566277_-	metal-dependent hydrolase	NA	NA	NA	NA
WP_000190288.1\|566384_566597_-	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_000729154.1\|566598_567465_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.7e-30	37.5
WP_000776555.1\|567945_568488_+	type 1 fimbrial protein subunit FimA	NA	NA	NA	NA
WP_000988364.1\|568707_569400_+	type 1 fimbria chaperone FimC	NA	NA	NA	NA
WP_001306954.1\|569430_572040_+	fimbrial biogenesis usher protein	NA	NA	NA	NA
WP_000691056.1\|572052_573060_+	type 1 fimbrin D-mannose specific adhesin FimH	NA	NA	NA	NA
WP_001250422.1\|573070_573586_+	fimbria assembly protein	NA	NA	NA	NA
WP_000805428.1\|573588_574221_-	fimbria biosynthesis transcriptional regulator FimZ	NA	NA	NA	NA
574496:574542	attL	NA	NA	NA	NA
WP_108942260.1\|574555_575719_-\|integrase	site-specific integrase	A0A088CD23	Shigella_phage	2.8e-198	86.3
WP_000433949.1\|575574_575946_-	helix-turn-helix domain-containing protein	M1FJ59	Enterobacteria_phage	2.8e-46	81.0
WP_000206813.1\|575945_576251_-	hypothetical protein	U5P0J0	Shigella_phage	1.4e-48	95.0
WP_001242707.1\|576250_576613_-	phage protein	K7PH61	Enterobacteria_phage	4.4e-65	98.3
WP_047083433.1\|576603_577140_-	5'-deoxynucleotidase	U5P0T3	Shigella_phage	5.3e-99	97.8
WP_000081287.1\|577267_578092_-	DUF2303 family protein	U5P439	Shigella_phage	6.0e-150	100.0
WP_000135682.1\|578157_578520_-	hypothetical protein	U5P4J6	Shigella_phage	3.3e-60	100.0
WP_000559922.1\|578990_579506_+	hypothetical protein	NA	NA	NA	NA
WP_001020634.1\|579825_580518_-	helix-turn-helix transcriptional regulator	S5FUZ3	Shigella_phage	1.0e-126	100.0
WP_001191674.1\|580615_580876_+	helix-turn-helix transcriptional regulator	S5FKP1	Shigella_phage	7.1e-41	100.0
WP_000515847.1\|580868_581420_+	hypothetical protein	S5FXP0	Shigella_phage	2.9e-100	98.4
WP_001250269.1\|581595_581775_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	7.8e-15	68.5
WP_000104967.1\|581764_582706_+	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	1.3e-153	100.0
WP_077613723.1\|582702_583197_+	PerC family transcriptional regulator	A0A0P0ZCF0	Stx2-converting_phage	2.1e-86	97.5
WP_162617006.1\|583196_583523_+	LexA family transcriptional regulator	A0A0N7KZF7	Stx2-converting_phage	3.3e-51	96.3
WP_000767127.1\|583519_583909_+	RusA family crossover junction endodeoxyribonuclease	A0A0P0ZD39	Stx2-converting_phage	1.6e-68	99.2
WP_001061408.1\|583928_584726_+	KilA-N domain-containing protein	A0A0P0ZCS0	Stx2-converting_phage	7.5e-150	99.6
WP_023277492.1\|584733_585723_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	5.4e-190	97.0
WP_001204780.1\|585740_586124_+	antitermination protein QuuD	A0A088CD47	Shigella_phage	4.0e-56	84.2
WP_000737283.1\|586313_587411_-	porin	Q1MVN1	Enterobacteria_phage	4.8e-155	76.3
WP_000670959.1\|587999_588215_+\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	3.4e-33	98.6
WP_001135281.1\|588214_588712_+	lysozyme RrrD	M1FJA0	Enterobacteria_phage	1.1e-90	98.2
WP_001228697.1\|588928_589111_+\|lysis	prophage lysis lipoprotein RzoD	K7PHU6	Enterobacteria_phage	1.4e-16	78.3
WP_000738500.1\|589201_589495_-	serum resistance lipoprotein Bor	A0A2R2X2B2	Escherichia_phage	5.7e-47	97.9
WP_001403557.1\|589785_590196_-	DUF1398 domain-containing protein	C6ZCX4	Enterobacteria_phage	9.4e-72	99.3
WP_001031427.1\|590481_590688_+	hypothetical protein	A0A0K2FJ18	Enterobacteria_phage	5.8e-30	100.0
WP_001421937.1\|590852_591047_-	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	8.7e-28	100.0
WP_000453603.1\|591435_591981_+	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	8.1e-95	98.9
WP_032292250.1\|591955_593881_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.1
WP_000198149.1\|593877_594084_+\|head,tail	Lambda prophage-derived head-to-tail joining protein W	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
WP_108942266.1\|594080_595682_+\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	3.2e-309	98.9
WP_000123333.1\|595662_596982_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	1.6e-234	98.9
WP_001549228.1\|596991_597324_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	5.0e-55	99.1
WP_000063224.1\|597379_598405_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.8e-188	97.7
WP_000158880.1\|598446_598842_+	DNA-packaging protein FI	A0A2R9YJP4	Escherichia_phage	2.2e-57	93.9
WP_000752994.1\|598853_599207_+\|tail	tail attachment protein	A0A2R9YJJ5	Escherichia_phage	9.0e-63	100.0
WP_000985116.1\|599218_599797_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	7.8e-80	97.9
WP_000683143.1\|599793_600189_+\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	8.5e-70	98.5
WP_001439072.1\|600196_600937_+\|tail	phage tail protein	A0A0K2FJ05	Enterobacteria_phage	4.0e-129	97.2
WP_000479139.1\|600952_601375_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	1.4e-70	96.4
WP_000459480.1\|601356_601791_+\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	2.0e-64	99.2
WP_108942268.1\|601783_604345_+\|tail	phage tail tape measure protein	A0A0K2FI43	Enterobacteria_phage	0.0e+00	91.4
WP_021520659.1\|604341_604671_+\|tail	phage tail protein	A0A0K2FIE9	Enterobacteria_phage	2.8e-58	99.1
WP_001152535.1\|604670_605369_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	1.8e-131	98.3
WP_000140728.1\|605374_606118_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	5.4e-150	97.6
WP_000090891.1\|606054_606687_+\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	2.2e-96	99.5
WP_000515477.1\|606746_610244_+	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	97.9
WP_047667381.1\|610314_610914_+	Ail/Lom family outer membrane beta-barrel protein	A5LH44	Enterobacteria_phage	4.8e-109	97.5
WP_089585292.1\|610978_614050_+\|tail	phage tail protein	U5N099	Enterobacteria_phage	2.5e-68	82.1
WP_000885574.1\|614049_614634_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	1.2e-101	93.8
WP_000239881.1\|614688_615357_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000937502.1\|615413_615719_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	2.8e-12	76.5
WP_001226386.1\|615902_617387_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_096968254.1\|617573_618527_-\|protease	omptin family outer membrane protease OmpT	NA	NA	NA	NA
WP_001177469.1\|619039_619801_-	DNA-binding transcriptional regulator EnvY	NA	NA	NA	NA
618950:618996	attR	NA	NA	NA	NA
WP_001224567.1\|619983_620874_-	DUF4434 family protein	NA	NA	NA	NA
WP_000662366.1\|620874_623847_-	bacteriophage adsorption protein NfrA	NA	NA	NA	NA
WP_000383951.1\|623833_626071_-	phage adsorption protein NrfB	NA	NA	NA	NA
WP_000420935.1\|626339_627476_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

1107985 : 1172659

Escherichia_phage(68.92%)

terminase,integrase,holin,capsid,lysis,portal

attL 1106250:1106265|attR 1171913:1171928

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1106250:1106265	attL	NA	NA	NA	NA
WP_001401545.1\|1107985_1109296_-\|integrase	site-specific integrase	A0A0P0ZGT7	Escherichia_phage	2.4e-254	100.0
WP_001208773.1\|1109348_1109633_-	excisionase family protein	G9L654	Escherichia_phage	9.1e-50	100.0
WP_000497812.1\|1109678_1109930_-	DUF4222 domain-containing protein	G3CFG8	Escherichia_phage	2.9e-39	100.0
WP_032276318.1\|1109917_1110151_-	hypothetical protein	G3CFG9	Escherichia_phage	3.1e-35	98.7
WP_000994795.1\|1110294_1110684_-	DUF1627 domain-containing protein	A0A0H4J3B1	Shigella_phage	2.1e-52	100.0
WP_001291843.1\|1110719_1110932_-	DUF1382 family protein	A0A0P0ZGA1	Escherichia_phage	7.1e-31	100.0
WP_000163444.1\|1110891_1111518_-	adenine methylase	A0A2R2Z304	Escherichia_phage	1.0e-122	100.0
WP_000809302.1\|1111514_1111946_-	hypothetical protein	A0A2R2Z303	Escherichia_phage	7.3e-75	100.0
WP_000211992.1\|1112001_1112679_-	ORF6N domain-containing protein	A0A2R2Z302	Escherichia_phage	1.3e-123	100.0
WP_001260979.1\|1113003_1113261_+	type II toxin-antitoxin system ParD family antitoxin	A0A0N7C055	Escherichia_phage	4.2e-38	100.0
WP_032276320.1\|1113389_1113587_+	hypothetical protein	A0A0N7BYR2	Escherichia_phage	9.2e-33	98.5
WP_001240641.1\|1113676_1113982_+	HigA family addiction module antidote protein	A0A2L1IV52	Escherichia_phage	3.4e-50	100.0
WP_001451754.1\|1114024_1114594_-	hypothetical protein	A0A0N7BS22	Escherichia_phage	7.3e-99	100.0
WP_052900916.1\|1114845_1115127_-	hypothetical protein	A0A0K2FIU9	Enterobacteria_phage	1.8e-50	98.9
WP_052900919.1\|1115329_1116223_-	ead/Ea22-like family protein	A0A0N7BYR8	Escherichia_phage	6.0e-164	92.1
WP_000476216.1\|1116219_1116459_-	hypothetical protein	A0A2R2Z309	Escherichia_phage	6.7e-38	97.5
WP_000157000.1\|1116451_1116655_-	hypothetical protein	A0A2R2Z313	Escherichia_phage	4.7e-32	100.0
WP_001453790.1\|1116651_1117530_-	phosphoadenosine phosphosulfate reductase family protein	A0A2R2Z314	Escherichia_phage	1.0e-179	100.0
WP_001159716.1\|1117637_1118081_-	hypothetical protein	A0A2R2Z306	Escherichia_phage	1.7e-79	100.0
WP_000080417.1\|1118157_1118979_-	YfdQ family protein	A0A2R2Z323	Escherichia_phage	2.3e-149	100.0
WP_000077905.1\|1119042_1119390_-	hypothetical protein	A0A2R2X2A9	Escherichia_phage	5.9e-59	100.0
WP_000344634.1\|1119465_1120053_-	hypothetical protein	A0A2R2Z318	Escherichia_phage	4.0e-108	100.0
WP_000187066.1\|1120052_1120742_-	YqaJ viral recombinase family protein	A0A2R2Z325	Escherichia_phage	2.7e-135	100.0
WP_000459724.1\|1120738_1121689_-	recombinase RecT	A0A2R2Z324	Escherichia_phage	1.4e-179	100.0
WP_000995346.1\|1121707_1121989_-	host nuclease inhibitor GamL	A0A2R2Z319	Escherichia_phage	1.7e-48	100.0
WP_000917253.1\|1122303_1122516_-	hypothetical protein	A0A2R2Z321	Escherichia_phage	3.4e-33	100.0
WP_000201269.1\|1122586_1123234_-	Rha family transcriptional regulator	A0A2R2Z320	Escherichia_phage	1.5e-119	100.0
WP_001064714.1\|1124094_1125048_-	type II restriction endonuclease BsuBI	A0A0P0ZG22	Escherichia_phage	7.0e-187	100.0
WP_000939558.1\|1125044_1126514_-	SAM-dependent methyltransferase	A0A2R2Z316	Escherichia_phage	3.5e-286	100.0
WP_001056250.1\|1126608_1127322_-	LexA family transcriptional regulator	A0A2R2X2B0	Escherichia_phage	6.3e-132	100.0
WP_001240876.1\|1127417_1127621_+	Cro/CI family transcriptional regulator	A0A2R2Z333	Escherichia_phage	2.0e-30	100.0
WP_001302923.1\|1127791_1127986_+	hypothetical protein	NA	NA	NA	NA
WP_001271433.1\|1128152_1128530_+	hypothetical protein	A0A2R2Z329	Escherichia_phage	4.0e-61	100.0
WP_000913119.1\|1128523_1130044_+	DEAD/DEAH box helicase	A0A2R2Z335	Escherichia_phage	6.4e-307	100.0
WP_001193567.1\|1130033_1131005_+	DNA primase	A0A2R2Z336	Escherichia_phage	1.4e-195	100.0
WP_000402092.1\|1131004_1131454_+	DUF1367 family protein	A0A0P0ZFW0	Escherichia_phage	7.6e-83	100.0
WP_000813671.1\|1131461_1132025_+	recombination protein NinG	A0A0P0ZG59	Escherichia_phage	8.9e-105	100.0
WP_000144767.1\|1132021_1132216_+	protein ninH	A0A0P0ZGE1	Escherichia_phage	8.4e-31	100.0
WP_001204859.1\|1132208_1132643_+	antitermination protein	A0A0P0ZGJ3	Escherichia_phage	4.8e-82	100.0
WP_000691354.1\|1133149_1134097_+	Shiga toxin Stx1 subunit A	Q777W4	Enterobacteria_phage	3.2e-171	100.0
WP_000752026.1\|1134106_1134376_+	Shiga toxin Stx1a subunit B	Q7AYI7	Enterobacteria_phage	1.6e-43	100.0
WP_108942304.1\|1134879_1136820_+	SASA family carbohydrate esterase	A0A0H4IQ82	Shigella_phage	0.0e+00	99.5
WP_000142786.1\|1136955_1137135_+	DUF1378 family protein	A0A088CBQ0	Shigella_phage	3.2e-24	94.9
WP_001290208.1\|1137175_1137421_+	DUF826 domain-containing protein	A0A088CE63	Shigella_phage	8.5e-20	100.0
WP_000284510.1\|1137498_1137714_+\|holin	holin	G9L6J5	Escherichia_phage	9.0e-34	100.0
WP_108942306.1\|1137718_1138252_+	lysozyme	A0A2L1IV49	Escherichia_phage	5.1e-94	92.7
WP_047091152.1\|1138525_1139095_+	antirepressor	A0A0N7KZV8	Escherichia_phage	6.4e-103	97.9
WP_000455406.1\|1139094_1139244_+	hypothetical protein	A0A0P0ZFU6	Escherichia_phage	2.4e-17	100.0
WP_047091151.1\|1139251_1139689_+\|lysis	lysis protein	A0A088CBQ1	Shigella_phage	1.4e-68	95.2
WP_001109015.1\|1139891_1140434_+	Rha family transcriptional regulator	A0A088CBJ5	Shigella_phage	1.1e-99	100.0
WP_033817459.1\|1140592_1140973_+	phage family protein	Q716B1	Shigella_phage	1.6e-65	98.4
WP_001086073.1\|1141372_1142179_+\|terminase	terminase	A0A0P0ZG40	Escherichia_phage	1.3e-133	100.0
WP_108942308.1\|1142159_1143866_+\|terminase	terminase	A0A0H4IT14	Shigella_phage	0.0e+00	99.8
WP_000787518.1\|1143865_1146010_+\|portal	portal protein	A0A0P0ZGR1	Escherichia_phage	0.0e+00	100.0
WP_000345015.1\|1146167_1147175_+	hypothetical protein	A0A0P0ZGF7	Escherichia_phage	2.3e-180	100.0
WP_000214467.1\|1147198_1148413_+\|capsid	N4-gp56 family major capsid protein	A0A0N7KZY1	Escherichia_phage	1.7e-233	100.0
WP_001140445.1\|1148467_1148857_+	hypothetical protein	A0A0P0ZFT7	Escherichia_phage	3.8e-62	100.0
WP_001290743.1\|1148907_1149369_+	hypothetical protein	A0A2R2Z354	Escherichia_phage	7.8e-75	100.0
WP_000829202.1\|1149352_1149916_+	hypothetical protein	A0A0P0ZGG2	Escherichia_phage	4.1e-102	100.0
WP_000207918.1\|1149915_1150566_+	hypothetical protein	A0A0H4J3F2	Shigella_phage	3.5e-121	100.0
WP_000118000.1\|1150562_1152344_+	hypothetical protein	A0A1I9LJS9	Stx_converting_phage	1.3e-61	99.2
WP_052901188.1\|1152412_1153084_+	DUF4376 domain-containing protein	S5MBX6	Escherichia_phage	5.1e-107	84.3
WP_001146316.1\|1153162_1154788_+	hypothetical protein	A0A0H4IT21	Shigella_phage	0.0e+00	98.0
WP_040077394.1\|1154784_1156053_+	host specificity protein J	A0A2R2Z364	Escherichia_phage	1.4e-219	99.8
WP_000455635.1\|1156067_1156346_+	hypothetical protein	A0A088CD71	Shigella_phage	1.1e-50	100.0
WP_001373155.1\|1156351_1156969_+	hypothetical protein	A0A088CBQ8	Shigella_phage	1.5e-121	99.5
WP_000078907.1\|1157833_1157974_+	Hok/Gef family protein	A0A2R2X2B4	Escherichia_phage	3.1e-19	100.0
WP_000035557.1\|1158030_1158432_+	hypothetical protein	A0A088CC37	Shigella_phage	1.2e-71	100.0
WP_000509491.1\|1158525_1159182_+	hypothetical protein	A0A088CD74	Shigella_phage	5.1e-104	100.0
WP_001561694.1\|1159640_1159892_+	hypothetical protein	A0A2R2Z351	Escherichia_phage	1.5e-11	92.3
WP_108942310.1\|1159902_1161147_+	hypothetical protein	A0A088CBK4	Shigella_phage	5.5e-208	96.2
WP_032276328.1\|1161236_1169618_+	hypothetical protein	A0A0P0ZCD0	Stx2-converting_phage	0.0e+00	97.4
WP_001273658.1\|1170559_1170733_+	general stress protein	Q9KX95	Enterobacteria_phage	4.9e-06	96.3
WP_001240628.1\|1170815_1172144_-	pyrimidine utilization transport protein G	Q9KX94	Enterobacteria_phage	1.0e-231	98.4
1171913:1171928	attR	NA	NA	NA	NA
WP_001028095.1\|1172164_1172659_-	pyrimidine utilization flavin reductase protein F	Q9KX93	Enterobacteria_phage	5.0e-51	97.9

DBSCAN-SWA_4

1399694 : 1468345

Escherichia_phage(29.41%)

terminase,integrase,protease,holin,capsid,head,tail,portal

attL 1399531:1399555|attR 1454540:1454564

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1399531:1399555	attL	NA	NA	NA	NA
WP_028985500.1\|1399694_1400825_-\|integrase	tyrosine-type recombinase/integrase	O21940	Phage_21	1.2e-103	51.4
WP_000113186.1\|1400802_1401051_-	excisionase	NA	NA	NA	NA
WP_028985499.1\|1401115_1403587_-	exonuclease	A0A192Y6E0	Salmonella_phage	2.0e-55	56.6
WP_000092839.1\|1403682_1403871_-	DUF1482 family protein	NA	NA	NA	NA
WP_000450222.1\|1403867_1404056_-	cell division inhibitor	NA	NA	NA	NA
WP_001365839.1\|1404840_1405209_-	hypothetical protein	NA	NA	NA	NA
WP_000380317.1\|1405220_1405373_-	DUF1391 family protein	M4QQ57	Salicola_phage	5.1e-07	53.2
WP_001003380.1\|1405562_1405970_-	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	5.5e-24	45.4
WP_000476991.1\|1406047_1406275_+	transcriptional regulator	NA	NA	NA	NA
WP_000705131.1\|1406258_1406780_+	hypothetical protein	NA	NA	NA	NA
WP_000054520.1\|1406760_1407726_+	hypothetical protein	U5P0A0	Shigella_phage	5.0e-55	61.2
WP_000790459.1\|1407732_1408473_+	ATP-binding protein	A0A088CBP4	Shigella_phage	6.2e-114	83.1
WP_000450858.1\|1408502_1409264_+	DUF1627 domain-containing protein	A0A088CE47	Shigella_phage	8.4e-74	64.0
WP_000215513.1\|1409323_1409518_+	hypothetical protein	NA	NA	NA	NA
WP_000211993.1\|1409859_1410411_+	ORF6N domain-containing protein	A0A0N7C203	Escherichia_phage	5.5e-43	53.3
WP_000882661.1\|1410625_1410838_+	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	5.6e-28	94.3
WP_000042395.1\|1410940_1411258_-	DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_001452497.1\|1411846_1412074_+	hypothetical protein	NA	NA	NA	NA
WP_024199763.1\|1412127_1412397_+	hypothetical protein	I6PCV7	Cronobacter_phage	1.2e-11	52.5
WP_033817200.1\|1412398_1413448_+	DUF968 domain-containing protein	U5P0K4	Shigella_phage	2.9e-109	54.0
WP_000904136.1\|1413460_1413823_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	2.4e-34	61.9
WP_021293385.1\|1413815_1414481_+	antiterminator	I6PDF8	Cronobacter_phage	4.6e-60	51.6
WP_000342737.1\|1414734_1415448_+	hypothetical protein	NA	NA	NA	NA
WP_000917733.1\|1415621_1415819_+	hypothetical protein	S5MQK8	Escherichia_phage	6.8e-28	96.9
WP_032308170.1\|1415970_1417029_+	site-specific DNA-methyltransferase	S5MDR0	Escherichia_phage	4.0e-207	99.1
WP_000271631.1\|1417508_1417937_+	cell envelope integrity protein TolA	NA	NA	NA	NA
WP_000382065.1\|1418633_1419359_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_039264423.1\|1421221_1423186_+	SASA family carbohydrate esterase	A0A0P0ZBH7	Stx2-converting_phage	2.0e-297	79.4
WP_000142780.1\|1423320_1423500_+	DUF1378 family protein	A0A2R2Z345	Escherichia_phage	5.4e-24	93.2
WP_001290230.1\|1423540_1423786_+	DUF826 domain-containing protein	A0A0P0ZGR2	Escherichia_phage	8.8e-17	100.0
WP_000284490.1\|1423863_1424079_+\|holin	holin	Q9ZWW2	Enterobacteria_phage	2.0e-33	98.6
WP_039264424.1\|1424082_1424874_+	DUF1327 domain-containing protein	Q08JA0	Stx2-converting_phage	4.0e-34	86.7
WP_062896309.1\|1426077_1426260_+	hypothetical protein	NA	NA	NA	NA
WP_071974579.1\|1426628_1426835_+	hypothetical protein	H6WRZ6	Salmonella_phage	4.6e-11	63.2
WP_000735655.1\|1426899_1427124_+	hypothetical protein	NA	NA	NA	NA
WP_000828070.1\|1427468_1427795_+	TonB family protein	H6WZK5	Escherichia_phage	6.3e-55	98.1
WP_000095744.1\|1427926_1428127_-	YlcI/YnfO family protein	H6WZK6	Escherichia_phage	1.3e-29	97.0
WP_000829192.1\|1428168_1428534_+	HNH endonuclease	B6ETE5	Enterobacteria_phage	1.6e-62	96.7
WP_000958387.1\|1428822_1429386_+\|terminase	terminase small subunit	A0A0N7KZJ8	Stx2-converting_phage	8.1e-90	100.0
WP_001373204.1\|1429382_1431044_+\|terminase	terminase large subunit	Q6H9U9	Enterobacteria_phage	0.0e+00	99.5
WP_000172990.1\|1431107_1433045_+\|capsid	phage major capsid protein	Q6H9U8	Enterobacteria_phage	0.0e+00	99.7
WP_001063099.1\|1433089_1433311_+	hypothetical protein	B6DZA0	Enterobacteria_phage	5.8e-36	100.0
WP_039264426.1\|1433256_1435842_+\|portal	phage portal protein	B6DZA1	Enterobacteria_phage	0.0e+00	96.2
WP_000126028.1\|1435838_1436165_+\|head,tail	phage gp6-like head-tail connector protein	B6ETF0	Enterobacteria_phage	3.9e-52	97.2
WP_001007902.1\|1436175_1436526_+\|head	phage head closure protein	A0A0P0ZCU6	Stx2-converting_phage	2.0e-59	99.1
WP_000573397.1\|1436522_1436969_+	HK97 gp10 family phage protein	A0A0N7KZI9	Stx2-converting_phage	2.0e-75	99.3
WP_000133383.1\|1436965_1437310_+	DUF3168 domain-containing protein	A0A0P0ZC17	Stx2-converting_phage	4.2e-57	99.1
WP_001275414.1\|1437376_1438093_+\|tail	tail protein	A0A0P0ZDV1	Stx2-converting_phage	1.5e-125	98.7
WP_000710936.1\|1438107_1438482_+\|tail	tail assembly protein	A0A0P0ZE84	Stx2-converting_phage	3.9e-64	98.4
WP_122993267.1\|1438577_1438787_+	DUF4035 domain-containing protein	H6WZM0	Escherichia_phage	1.5e-33	98.6
WP_000212873.1\|1438835_1442078_+\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	0.0e+00	89.5
WP_108942322.1\|1442070_1442412_+\|tail	phage tail protein	A0A0P0ZDL9	Stx2-converting_phage	4.9e-50	80.4
WP_000738904.1\|1442610_1443774_+	porin OmpC	Q1MVN1	Enterobacteria_phage	1.6e-140	66.9
WP_001365876.1\|1443984_1444683_+\|tail	phage minor tail protein L	S5M7Q4	Escherichia_phage	1.4e-131	98.3
WP_039264428.1\|1444693_1445437_+\|tail	phage tail protein	S5MQI8	Escherichia_phage	3.8e-148	98.0
WP_137573430.1\|1445382_1446015_+\|tail	tail assembly protein	Q9EYE5	Enterobacteria_phage	3.0e-101	91.4
WP_108942324.1\|1446924_1450611_+	DUF1983 domain-containing protein	S5MW25	Escherichia_phage	0.0e+00	87.9
WP_000078853.1\|1450809_1450950_+	Hok/Gef family protein	S5M7Q0	Escherichia_phage	2.9e-17	95.7
WP_000290874.1\|1451094_1452363_+\|tail	phage tail protein	S5MDN9	Escherichia_phage	6.5e-55	99.1
WP_001049904.1\|1452431_1453103_+	DUF4376 domain-containing protein	S5MBX6	Escherichia_phage	9.6e-106	83.4
WP_000211405.1\|1453510_1454071_-	ORF6N domain-containing protein	A0A0P0ZC44	Stx2-converting_phage	5.4e-54	69.8
WP_001079509.1\|1454717_1455224_-	ferritin-like domain-containing protein	NA	NA	NA	NA
1454540:1454564	attR	NA	NA	NA	NA
WP_001056491.1\|1455269_1455770_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_000807651.1\|1455855_1456035_-	general stress protein	NA	NA	NA	NA
WP_000443056.1\|1456415_1457222_-	tryptophan synthase subunit alpha	NA	NA	NA	NA
WP_000209520.1\|1457221_1458415_-	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_001297118.1\|1458426_1459785_-	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	A0A0P0IR83	Acinetobacter_phage	8.6e-37	40.7
WP_000763511.1\|1459788_1461384_-	bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD	A0A0N7IRD9	Acinetobacter_phage	3.8e-52	38.5
WP_001194590.1\|1461383_1462946_-	anthranilate synthase component I	NA	NA	NA	NA
WP_001700591.1\|1463037_1463082_-	trp operon leader peptide	NA	NA	NA	NA
WP_001285661.1\|1463219_1464101_+	5'-3' exoribonuclease	NA	NA	NA	NA
WP_001295575.1\|1464097_1464718_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
WP_001291216.1\|1464818_1465691_+	23S rRNA pseudouridine(2605) synthase RluB	NA	NA	NA	NA
WP_001278906.1\|1465730_1466321_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
WP_000559280.1\|1466317_1467076_-	YciK family oxidoreductase	A0A0N9R355	Chrysochromulina_ericina_virus	1.5e-06	25.0
WP_000422045.1\|1467295_1468345_+\|protease	protease SohB	A0A2H4UUF9	Bodo_saltans_virus	1.3e-21	31.5

DBSCAN-SWA_5

1756739 : 1815489

Enterobacteria_phage(38.46%)

terminase,integrase,transposase,capsid,head,tail,lysis,portal

attL 1787756:1787771|attR 1820185:1820200

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000527781.1\|1756739_1758200_-	mannitol dehydrogenase family protein	H8ZJP8	Ostreococcus_tauri_virus	8.6e-43	29.6
WP_000347482.1\|1758288_1759572_-	MHS family MFS transporter	NA	NA	NA	NA
WP_120795384.1\|1760176_1760290_+	Rac prophage; protein YnaM	A0A1C9IHU6	Salmonella_phage	8.4e-07	80.6
WP_000836768.1\|1760358_1760592_+	cold shock protein YdfK	A0A192Y6D5	Salmonella_phage	1.1e-32	88.3
WP_000086527.1\|1760908_1761499_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	1.6e-24	38.8
WP_000885611.1\|1761596_1762172_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	6.5e-103	95.3
WP_073547402.1\|1762171_1765570_-	short-chain fatty acid transporter	X2KTY7	Enterobacteria_phage	2.4e-11	35.5
WP_032292241.1\|1765634_1766234_-	Ail/Lom family outer membrane beta-barrel protein	H6WZM8	Escherichia_phage	2.9e-106	95.0
WP_000515751.1\|1766301_1769781_-	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	89.8
WP_000090905.1\|1769841_1770444_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	5.6e-89	85.6
WP_000140764.1\|1770380_1771124_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	4.5e-149	98.0
WP_108942344.1\|1771129_1771828_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	4.0e-131	97.8
WP_000847345.1\|1771827_1772157_-\|tail	phage tail protein	A0A0K2FIE9	Enterobacteria_phage	8.1e-58	98.2
WP_000459480.1\|1774724_1775159_-\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	2.0e-64	99.2
WP_000479139.1\|1775140_1775563_-\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	1.4e-70	96.4
WP_001439072.1\|1775578_1776319_-\|tail	phage tail protein	A0A0K2FJ05	Enterobacteria_phage	4.0e-129	97.2
WP_000683143.1\|1776326_1776722_-\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	8.5e-70	98.5
WP_000985116.1\|1776718_1777297_-\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	7.8e-80	97.9
WP_000752994.1\|1777308_1777662_-\|tail	tail attachment protein	A0A2R9YJJ5	Escherichia_phage	9.0e-63	100.0
WP_000158880.1\|1777673_1778069_-	DNA-packaging protein FI	A0A2R9YJP4	Escherichia_phage	2.2e-57	93.9
WP_000063224.1\|1778110_1779136_-\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.8e-188	97.7
WP_001549228.1\|1779191_1779524_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	5.0e-55	99.1
WP_000123333.1\|1779533_1780853_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	1.6e-234	98.9
WP_108942266.1\|1780833_1782435_-\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	3.2e-309	98.9
WP_000198149.1\|1782431_1782638_-\|head,tail	Lambda prophage-derived head-to-tail joining protein W	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
WP_032292250.1\|1782634_1784560_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.1
WP_000453603.1\|1784534_1785080_-	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	8.1e-95	98.9
WP_001368374.1\|1785468_1785702_+	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	2.5e-21	84.1
WP_000373090.1\|1785759_1786170_+	DUF1398 domain-containing protein	C6ZCX4	Enterobacteria_phage	2.5e-56	79.4
WP_001309517.1\|1786665_1786821_-	hypothetical protein	NA	NA	NA	NA
WP_120795388.1\|1786900_1786966_-	Qin prophage; protein YnfR	NA	NA	NA	NA
WP_071524604.1\|1786968_1787157_-	cold-shock protein	NA	NA	NA	NA
WP_000066495.1\|1787167_1787380_-	cold shock protein CspI	A0A1W6JNX5	Morganella_phage	1.2e-22	74.3
WP_001071769.1\|1787742_1788240_-	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	2.9e-06	29.5
1787756:1787771	attL	NA	NA	NA	NA
WP_001092971.1\|1788236_1788770_-	lysozyme	K7PLY1	Enterobacteria_phage	6.4e-97	93.2
WP_000189916.1\|1788766_1789078_-	YdfR family protein	K7PGU6	Enterobacteria_phage	2.0e-26	64.6
WP_000839590.1\|1789082_1789298_-\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	1.1e-31	94.4
WP_000066484.1\|1790051_1790267_-	cold shock-like protein CspB	A0A1W6JNX5	Morganella_phage	3.4e-25	76.5
WP_000087756.1\|1790567_1790780_+	cold shock-like protein CspF	NA	NA	NA	NA
WP_120795389.1\|1790834_1790924_+	Qin prophage; protein YnfS	NA	NA	NA	NA
WP_001047135.1\|1791201_1791954_-	antitermination protein	A0A192Y5X6	Salmonella_phage	7.1e-134	92.8
WP_108942346.1\|1791967_1793017_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	6.3e-112	57.0
WP_012304870.1\|1793018_1793297_-	hypothetical protein	NA	NA	NA	NA
WP_000980994.1\|1793363_1793615_-	hypothetical protein	NA	NA	NA	NA
WP_000813254.1\|1793831_1793987_-	type I toxin-antitoxin system toxin HokD	A0A0U2QV81	Escherichia_phage	1.5e-17	96.1
WP_000323025.1\|1794058_1794346_-	type II toxin-antitoxin system mRNA interferase RelE	A0A2H4JBF4	uncultured_Caudovirales_phage	1.4e-29	66.0
WP_000534858.1\|1794345_1794585_-	type II toxin-antitoxin system antitoxin RelB	A0A2H4JBG1	uncultured_Caudovirales_phage	1.6e-18	54.4
WP_001326990.1\|1794609_1794915_+	hypothetical protein	NA	NA	NA	NA
WP_001317460.1\|1795117_1795450_+	protein flxA	NA	NA	NA	NA
WP_108942348.1\|1795886_1797200_-\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_000955178.1\|1797377_1797560_+	hypothetical protein	Q7Y2Q9	Escherichia_phage	6.3e-12	74.5
WP_072096395.1\|1797534_1797753_-	hypothetical protein	NA	NA	NA	NA
WP_001310834.1\|1798866_1799223_-	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	1.6e-38	69.6
WP_001151262.1\|1799219_1799642_-	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	4.4e-64	92.0
WP_000054512.1\|1799682_1800648_-	hypothetical protein	U5P0A0	Shigella_phage	2.2e-55	60.2
WP_000705358.1\|1800628_1801150_-	hypothetical protein	NA	NA	NA	NA
WP_000920568.1\|1801133_1801364_-	dicB transcriptional regulator DicC	NA	NA	NA	NA
WP_000448564.1\|1801447_1801855_+	DNA-binding transcriptional dual regulator DicA	K7PM82	Enterobacteria_phage	4.4e-13	54.7
WP_000379575.1\|1802021_1802177_+	DUF1391 family protein	M4QQ57	Salicola_phage	3.0e-07	53.2
WP_001171942.1\|1802336_1802555_+	hypothetical protein	NA	NA	NA	NA
WP_001329848.1\|1802558_1802723_-	hypothetical protein	NA	NA	NA	NA
WP_000854559.1\|1803122_1803311_+	cell division inhibition protein DicB	NA	NA	NA	NA
WP_001083297.1\|1803307_1803499_+\|lysis	lysis protein YdfD	NA	NA	NA	NA
WP_040089035.1\|1803591_1806063_+	exonuclease	A0A192Y6E0	Salmonella_phage	7.2e-58	56.1
WP_001296941.1\|1806150_1806387_+	excisionase family protein	S4TND0	Salmonella_phage	6.1e-15	50.7
WP_000877001.1\|1806421_1807702_+\|integrase	site-specific integrase	B6DZ48	Enterobacteria_phage	6.6e-156	62.3
WP_001360138.1\|1807721_1807832_-	hypothetical protein	NA	NA	NA	NA
WP_000836057.1\|1807889_1808909_-	Zn-dependent oxidoreductase	E3SJ82	Synechococcus_phage	7.4e-17	26.2
WP_001295394.1\|1808920_1810135_-	starvation-sensing protein RspA	Q6A202	Oenococcus_phage	1.4e-46	29.0
WP_000598292.1\|1810340_1810667_-	YnfA family protein	A0A218MNG8	uncultured_virus	9.9e-24	55.6
WP_000705214.1\|1810801_1811143_+	DUF1283 family protein	NA	NA	NA	NA
WP_001138581.1\|1811177_1811738_+	spermidine N1-acetyltransferase	NA	NA	NA	NA
WP_001321287.1\|1811740_1812451_-	YnfC family lipoprotein	NA	NA	NA	NA
WP_001295396.1\|1812558_1812864_+	DUF1161 domain-containing protein	NA	NA	NA	NA
WP_000041685.1\|1813062_1815489_+	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	2.7e-214	49.2
1820185:1820200	attR	NA	NA	NA	NA

DBSCAN-SWA_6

1826953 : 1844391

uncultured_Caudovirales_phage(100.0%)

terminase,integrase,protease,capsid,head,portal

attL 1832628:1832643|attR 1855571:1855586

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001260849.1\|1826953_1827775_+\|protease	serine protease	NA	NA	NA	NA
WP_000046661.1\|1827813_1828143_-	multidrug/spermidine efflux SMR transporter subunit MdtI	NA	NA	NA	NA
WP_000276149.1\|1828129_1828495_-	multidrug/spermidine efflux SMR transporter subunit MdtJ	NA	NA	NA	NA
WP_000133415.1\|1829858_1830140_-	hypothetical protein	NA	NA	NA	NA
WP_000127881.1\|1830153_1831815_-\|terminase	terminase large subunit	A0A2H4JB64	uncultured_Caudovirales_phage	2.0e-277	81.4
WP_000113645.1\|1831798_1832155_-\|terminase	phage terminase small subunit P27 family	A0A2H4JHS3	uncultured_Caudovirales_phage	9.4e-52	81.4
WP_000174068.1\|1832278_1832461_-	hypothetical protein	NA	NA	NA	NA
WP_001145905.1\|1832444_1832885_-	HNH endonuclease	A0A2H4JAS8	uncultured_Caudovirales_phage	2.5e-62	72.6
1832628:1832643	attL	NA	NA	NA	NA
WP_000134109.1\|1832884_1833181_-	hypothetical protein	A0A2H4JD08	uncultured_Caudovirales_phage	6.9e-32	64.3
WP_001020659.1\|1833177_1833516_-\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	8.7e-31	52.7
WP_000267605.1\|1833512_1834724_-\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	1.9e-189	79.5
WP_000504056.1\|1834725_1835298_-\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	3.6e-61	63.0
WP_032308183.1\|1835337_1836495_-\|capsid	phage major capsid protein	A0A2H4JED2	uncultured_Caudovirales_phage	1.1e-136	64.6
WP_000929753.1\|1836782_1837055_-	PerC family transcriptional regulator	NA	NA	NA	NA
WP_000126668.1\|1837065_1837476_-	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_001294166.1\|1837485_1837791_-	hypothetical protein	NA	NA	NA	NA
WP_024174166.1\|1837787_1838039_-	hypothetical protein	NA	NA	NA	NA
WP_033817305.1\|1838241_1839651_-	AAA family ATPase	A0A2H4JFA4	uncultured_Caudovirales_phage	3.4e-113	58.9
WP_033817306.1\|1839647_1839947_-	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_033817307.1\|1839952_1840186_-	hypothetical protein	NA	NA	NA	NA
WP_033812069.1\|1840178_1840412_-	hypothetical protein	NA	NA	NA	NA
WP_033882705.1\|1840404_1840644_-	hypothetical protein	NA	NA	NA	NA
WP_000609225.1\|1840633_1840846_-	hypothetical protein	NA	NA	NA	NA
WP_000226782.1\|1840838_1841036_-	host cell division inhibitor Icd-like protein	NA	NA	NA	NA
WP_000201456.1\|1841230_1841410_+	hypothetical protein	NA	NA	NA	NA
WP_072096427.1\|1841467_1841695_+	hypothetical protein	NA	NA	NA	NA
WP_000103621.1\|1841914_1842094_+	hypothetical protein	A0A2H4JB52	uncultured_Caudovirales_phage	1.5e-10	58.6
WP_000182306.1\|1842151_1842355_+	hypothetical protein	NA	NA	NA	NA
WP_000953271.1\|1842598_1842787_-	AlpA family transcriptional regulator	A0A2H4JB58	uncultured_Caudovirales_phage	5.9e-13	64.2
WP_001364183.1\|1843161_1844391_-\|integrase	site-specific integrase	A0A2H4JB45	uncultured_Caudovirales_phage	1.9e-131	54.9
1855571:1855586	attR	NA	NA	NA	NA

DBSCAN-SWA_7

2231757 : 2279042

Escherichia_phage(25.0%)

plate,terminase,integrase,transposase,holin,capsid,head,tail,portal

attL 2235113:2235172|attR 2279112:2279188

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000399679.1\|2231757_2232738_+\|transposase	IS110-like element IS621 family transposase	NA	NA	NA	NA
WP_001007749.1\|2233036_2233687_+	metal-binding protein ZinT	NA	NA	NA	NA
WP_001079074.1\|2234029_2234560_+	cytochrome b	A0A0U2QLA7	Escherichia_phage	1.9e-56	100.0
2235113:2235172	attL	NA	NA	NA	NA
WP_000974856.1\|2235537_2236542_-\|tail	tail fiber protein	NA	NA	NA	NA
WP_001287093.1\|2236547_2237591_-	phage late control protein	R9TNM7	Vibrio_phage	9.9e-33	28.7
WP_000634204.1\|2237594_2237807_-\|tail	tail protein X	NA	NA	NA	NA
WP_000418460.1\|2237823_2238066_+	superinfection immunity protein	M4MA40	Vibrio_phage	1.8e-06	46.9
WP_024184912.1\|2238044_2238434_-\|tail	phage tail protein	E5FFG4	Burkholderia_phage	1.5e-15	39.5
WP_012138675.1\|2238469_2240110_-	hypothetical protein	A0A2I7R3J9	Vibrio_phage	8.3e-18	27.9
WP_000444666.1\|2240218_2240500_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_039264464.1\|2240512_2241025_-\|tail	phage tail protein	NA	NA	NA	NA
WP_039264465.1\|2241042_2242536_-\|tail	tail sheath protein	R9TMQ0	Vibrio_phage	3.8e-70	34.1
WP_001559300.1\|2242541_2242775_-	hypothetical protein	NA	NA	NA	NA
WP_039264466.1\|2243726_2244353_-\|tail	phage tail protein I	A0A193GYD1	Enterobacter_phage	3.1e-26	39.5
WP_039264467.1\|2244355_2245276_-\|plate	baseplate assembly protein	D5LGZ3	Escherichia_phage	7.0e-67	47.4
WP_047621011.1\|2245272_2245614_-\|plate	baseplate assembly protein	D4HTV2	Vibrio_phage	1.8e-20	51.6
WP_039264469.1\|2245616_2246519_-\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
WP_108942388.1\|2246499_2247036_-	hypothetical protein	NA	NA	NA	NA
WP_039264472.1\|2247032_2247713_-	hypothetical protein	NA	NA	NA	NA
WP_039264473.1\|2247744_2248125_-	hypothetical protein	NA	NA	NA	NA
WP_108942389.1\|2248121_2248529_-	DNA-packaging protein	NA	NA	NA	NA
WP_039264475.1\|2248559_2249594_-\|capsid	major capsid protein	A0A2I6TCE5	Escherichia_phage	9.2e-108	57.4
WP_000206291.1\|2249655_2249985_-\|head	head decoration protein	C6ZCY1	Enterobacteria_phage	2.6e-08	39.5
WP_001145891.1\|2249984_2251295_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	5.8e-99	51.7
WP_028985357.1\|2251294_2252866_-\|portal	phage portal protein	E4WL21	Enterobacteria_phage	6.6e-190	63.5
WP_012565126.1\|2252862_2253096_-	hypothetical protein	NA	NA	NA	NA
WP_000148194.1\|2253092_2254958_-\|terminase	phage terminase large subunit family protein	A0A1I9KF19	Aeromonas_phage	4.1e-191	53.2
WP_000168116.1\|2254944_2255511_-	hypothetical protein	A0A1I9KFT4	Aeromonas_phage	7.7e-32	43.5
WP_001559319.1\|2255883_2256129_+	hypothetical protein	NA	NA	NA	NA
WP_039264476.1\|2256445_2256739_+	hypothetical protein	NA	NA	NA	NA
WP_000131874.1\|2257354_2257834_-	TIGR02594 family protein	A0A222YWL8	Escherichia_phage	1.6e-62	69.4
WP_039264477.1\|2257820_2258105_-\|holin	phage holin family protein	A0A0A0YPY6	Escherichia_phage	1.0e-08	42.9
WP_001294589.1\|2258104_2258488_-	hypothetical protein	NA	NA	NA	NA
WP_039264478.1\|2258600_2259272_-	antitermination protein	Q7Y3X2	Yersinia_phage	7.8e-15	32.4
WP_000717782.1\|2259271_2259565_-	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	5.0e-35	71.6
WP_039264479.1\|2259561_2260158_-	DUF1367 family protein	H9C173	Pectobacterium_phage	1.4e-71	64.6
WP_001025459.1\|2260234_2260414_-	hypothetical protein	NA	NA	NA	NA
WP_039264586.1\|2260565_2261207_-	hypothetical protein	NA	NA	NA	NA
WP_001559328.1\|2261325_2261604_-	hypothetical protein	NA	NA	NA	NA
WP_000224749.1\|2262171_2262660_+	ImmA/IrrE family metallo-endopeptidase	A0A142KB62	Gordonia_phage	6.4e-27	42.7
WP_039264480.1\|2262669_2263275_+	hypothetical protein	NA	NA	NA	NA
WP_048963140.1\|2263384_2263789_-	hypothetical protein	NA	NA	NA	NA
WP_021560857.1\|2264109_2264775_-	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_021560858.1\|2264979_2265177_-	hypothetical protein	NA	NA	NA	NA
WP_039264482.1\|2265803_2266727_+	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_039264483.1\|2266904_2267699_-	ORF6N domain-containing protein	A0A088CD42	Shigella_phage	2.8e-48	74.6
WP_039264484.1\|2268380_2268605_-	hypothetical protein	NA	NA	NA	NA
WP_000192614.1\|2268834_2269236_-	hypothetical protein	NA	NA	NA	NA
WP_028985348.1\|2269274_2270666_-	replicative DNA helicase	I6R0N4	Salmonella_phage	1.2e-102	45.6
WP_039264487.1\|2270662_2271727_-	hypothetical protein	C8CGZ1	Staphylococcus_phage	7.7e-33	53.9
WP_000943913.1\|2271729_2271954_-	hypothetical protein	H9C163	Pectobacterium_phage	1.1e-18	56.8
WP_039264488.1\|2271993_2272470_-	hypothetical protein	H9C162	Pectobacterium_phage	5.5e-23	48.6
WP_028985347.1\|2272528_2272759_-	transcriptional regulator	H6WRX5	Salmonella_phage	4.2e-21	61.8
WP_001296165.1\|2272857_2273271_+	helix-turn-helix domain-containing protein	A0A1B5FPF4	Escherichia_phage	8.7e-09	49.1
WP_028985346.1\|2274267_2274588_+	hypothetical protein	NA	NA	NA	NA
WP_028985345.1\|2274618_2276841_+	hypothetical protein	H9C157	Pectobacterium_phage	1.1e-92	35.4
WP_001559346.1\|2276837_2277407_+	siphovirus Gp157 family protein	H9C156	Pectobacterium_phage	3.6e-37	50.3
WP_000916333.1\|2277406_2277589_+	hypothetical protein	NA	NA	NA	NA
WP_001559348.1\|2277798_2278014_+	DUF4224 domain-containing protein	H9C153	Pectobacterium_phage	1.0e-21	67.6
WP_028985344.1\|2278013_2279042_+\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	5.6e-97	55.4
2279112:2279188	attR	NA	NA	NA	NA

DBSCAN-SWA_8

2322578 : 2331730

Acanthocystis_turfacea_Chlorella_virus(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000704855.1\|2322578_2323745_-	UDP-glucose 6-dehydrogenase	M1I798	Paramecium_bursaria_Chlorella_virus	2.2e-110	51.9
WP_089539956.1\|2323992_2325399_-	NADP-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	1.8e-37	28.3
WP_089539959.1\|2325562_2326933_-	phosphomannomutase CpsG	A0A127AWJ1	Bacillus_phage	2.2e-32	27.8
WP_089539961.1\|2326957_2327704_-	glycosyltransferase	A0A1V0SAH6	Catovirus	3.5e-08	40.4
WP_089539963.1\|2327769_2329173_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	6.3e-51	30.2
WP_089590403.1\|2329184_2329640_-	GDP-mannose mannosyl hydrolase	NA	NA	NA	NA
WP_089539966.1\|2329642_2330608_-	GDP-L-fucose synthase	M1I5W5	Acanthocystis_turfacea_Chlorella_virus	3.1e-89	52.4
WP_089539968.1\|2330611_2331730_-	GDP-mannose 4,6-dehydratase	M1HVG7	Acanthocystis_turfacea_Chlorella_virus	1.4e-130	63.3

DBSCAN-SWA_9

2391689 : 2492031

103

Enterobacteria_phage(40.3%)

tRNA,terminase,integrase,holin,capsid,head,tail,lysis,portal

attL 2439928:2439948|attR 2489537:2489557

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000476011.1\|2391689_2393051_+\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	1.1e-217	100.0
WP_000716757.1\|2393380_2393698_-	hypothetical protein	NA	NA	NA	NA
WP_000807362.1\|2394112_2395012_+	lipid kinase YegS	A0A1V0SBJ0	Catovirus	1.3e-12	29.0
WP_000178552.1\|2395093_2395873_-	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_000844220.1\|2395972_2397013_-	galactitol-1-phosphate 5-dehydrogenase	NA	NA	NA	NA
WP_000490679.1\|2397060_2398416_-	galactitol permease IIC component	NA	NA	NA	NA
WP_000823287.1\|2398419_2398704_-	PTS galactitol transporter subunit IIB	NA	NA	NA	NA
WP_000182903.1\|2398734_2399187_-	PTS galactitol transporter subunit IIA	NA	NA	NA	NA
WP_000853886.1\|2399196_2400459_-	tagatose-bisphosphate aldolase subunit GatZ	NA	NA	NA	NA
WP_001307281.1\|2400487_2401342_-	tagatose-bisphosphate aldolase subunit GatY	NA	NA	NA	NA
WP_000129551.1\|2401649_2402702_-	class I fructose-bisphosphate aldolase	NA	NA	NA	NA
WP_000858498.1\|2402958_2404236_+	MFS transporter	NA	NA	NA	NA
WP_000846217.1\|2404232_2405237_+	ADP-ribosylglycohydrolase family protein	A0A1S6UB21	Serratia_phage	7.5e-14	29.4
WP_000011957.1\|2405233_2406199_+	sugar kinase	NA	NA	NA	NA
WP_000434038.1\|2406172_2406919_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_001307284.1\|2406970_2407789_-	glycoside hydrolase family 25 protein	D0R7H8	Paenibacillus_phage	1.7e-24	38.5
WP_000822275.1\|2407853_2408654_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA
WP_001195602.1\|2408650_2409439_-	hydroxyethylthiazole kinase	NA	NA	NA	NA
WP_000019944.1\|2409661_2409934_-	Ni(II)/Co(II)-binding transcriptional repressor RcnR	NA	NA	NA	NA
WP_000134647.1\|2410054_2410879_+	nickel/cobalt efflux protein RcnA	NA	NA	NA	NA
WP_000153067.1\|2411097_2411436_+	Ni(II)/Co(II) efflux transporter accessory subunit RcnB	NA	NA	NA	NA
WP_001026150.1\|2411517_2412552_-	putative fimbrial-like adhesin protein	NA	NA	NA	NA
WP_108942396.1\|2412565_2415046_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_000677395.1\|2415061_2415736_-	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_000830490.1\|2415815_2416358_-	fimbrial protein	NA	NA	NA	NA
WP_001447395.1\|2416650_2416932_-	YehE family protein	NA	NA	NA	NA
WP_001005448.1\|2417194_2418304_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA
WP_001295427.1\|2418435_2420469_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.8e-54	27.6
WP_021542174.1\|2420609_2424404_+	WGR and DUF4132 domain-containing protein	NA	NA	NA	NA
WP_021542175.1\|2424413_2428046_+	DUF4132 domain-containing protein	NA	NA	NA	NA
WP_000636926.1\|2428106_2428427_+	hypothetical protein	NA	NA	NA	NA
WP_000074859.1\|2429609_2430698_+	MoxR family ATPase	NA	NA	NA	NA
WP_001294366.1\|2430708_2432988_+	hypothetical protein	NA	NA	NA	NA
WP_001292774.1\|2432980_2434117_+	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	1.1e-162	97.7
WP_001317947.1\|2434113_2436114_+	hypothetical protein	Q9EYF6	Enterobacteria_phage	0.0e+00	96.1
WP_001295429.1\|2436238_2436700_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	1.9e-76	100.0
WP_001295430.1\|2436740_2437211_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
WP_000598641.1\|2437257_2437977_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_001295431.1\|2437973_2439659_-	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
2439928:2439948	attL	NA	NA	NA	NA
WP_001217533.1\|2440173_2440422_+	DinI-like family protein	S5MQI1	Escherichia_phage	1.0e-33	86.6
WP_001373129.1\|2440691_2441366_-	DUF4376 domain-containing protein	S5MBX6	Escherichia_phage	3.3e-114	90.1
WP_000438829.1\|2441377_2441590_-	hypothetical protein	NA	NA	NA	NA
WP_064579206.1\|2441599_2443312_-\|tail	phage tail protein	S5MDN9	Escherichia_phage	5.9e-67	51.7
WP_000078853.1\|2443456_2443597_-	Hok/Gef family protein	S5M7Q0	Escherichia_phage	2.9e-17	95.7
WP_108942397.1\|2443795_2447482_-	DUF1983 domain-containing protein	S5MW25	Escherichia_phage	0.0e+00	87.1
WP_122996641.1\|2448390_2449023_-\|tail	tail assembly protein	Q9EYE5	Enterobacteria_phage	2.4e-98	88.6
WP_108942398.1\|2448968_2449712_-\|tail	phage tail protein	S5MQI8	Escherichia_phage	1.5e-144	95.1
WP_106901605.1\|2449722_2450421_-\|tail	phage minor tail protein L	S5M7Q4	Escherichia_phage	1.2e-132	99.1
WP_000847280.1\|2450420_2450750_-\|tail	phage tail protein	S5MW28	Escherichia_phage	1.2e-58	99.1
WP_087661333.1\|2450746_2453326_-\|tail	phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	78.6
WP_000533452.1\|2453306_2453720_-\|tail	phage tail assembly protein T	S5MDP5	Escherichia_phage	1.9e-43	84.8
WP_001299690.1\|2453746_2454178_-\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	2.4e-41	67.4
WP_000235126.1\|2454193_2454943_-\|tail	phage tail protein	S5M7Q5	Escherichia_phage	1.6e-130	94.4
WP_000683074.1\|2454950_2455346_-\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	2.2e-57	80.9
WP_001571311.1\|2455342_2455918_-\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	1.7e-50	58.3
WP_001204531.1\|2455933_2456287_-\|tail	tail attachment protein	A0A0K2FJB7	Enterobacteria_phage	2.8e-40	69.2
WP_001373367.1\|2456279_2456663_-	hypothetical protein	NA	NA	NA	NA
WP_044803575.1\|2456714_2457743_-\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.7e-114	62.2
WP_000256803.1\|2457800_2458148_-\|head	head decoration protein	C6ZCY1	Enterobacteria_phage	4.4e-22	57.0
WP_021293161.1\|2458183_2459689_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	3.0e-99	53.5
WP_021293160.1\|2459678_2461271_-\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	3.4e-186	61.6
WP_000259002.1\|2461267_2461474_-\|head,tail	head-tail joining protein	K7PM10	Enterobacteria_phage	7.9e-11	56.9
WP_096780415.1\|2461457_2463428_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	3.1e-261	67.4
WP_001102148.1\|2463357_2463906_-\|terminase	terminase small subunit	A0A0U2S671	Escherichia_phage	1.0e-57	82.7
WP_001109017.1\|2464568_2465111_-	hypothetical protein	A0A088CBJ5	Shigella_phage	4.1e-99	98.9
WP_032209690.1\|2465313_2465751_-\|lysis	lysis protein	A0A0P0ZFH2	Escherichia_phage	4.7e-69	97.9
WP_000443009.1\|2465753_2465903_-	hypothetical protein	A0A0P0ZG36	Escherichia_phage	6.7e-12	79.6
WP_001056888.1\|2465902_2466475_-	hypothetical protein	A0A088CD55	Shigella_phage	9.0e-97	88.4
WP_108942400.1\|2466749_2467283_-	lysozyme	Q08J98	Stx2-converting_phage	6.2e-100	95.5
WP_024199769.1\|2467417_2467705_-	hypothetical protein	NA	NA	NA	NA
WP_001041949.1\|2467793_2468585_-	DUF1327 domain-containing protein	Q08JA0	Stx2-converting_phage	5.7e-33	85.5
WP_000284490.1\|2468588_2468804_-\|holin	holin	Q9ZWW2	Enterobacteria_phage	2.0e-33	98.6
WP_108942401.1\|2469298_2471263_-	SASA family carbohydrate esterase	A0A0P0ZBH7	Stx2-converting_phage	1.2e-294	78.5
WP_044803553.1\|2471506_2471830_+	anti-adapter protein IraM	Q20GJ2	Phage_258-320	5.9e-61	99.1
WP_000738072.1\|2472127_2472397_-	Shiga toxin Stx2a subunit B	Q6DWN4	Enterobacteria_phage	1.2e-43	100.0
WP_000649753.1\|2472408_2473368_-	Shiga toxin Stx2c subunit A	Q776Q3	Enterobacteria_phage	5.6e-176	100.0
WP_087661264.1\|2473750_2474809_-	site-specific DNA-methyltransferase	A0A0N7KZF8	Stx2-converting_phage	2.1e-192	92.0
WP_000917741.1\|2474959_2475157_-	hypothetical protein	A0A0P0ZDH6	Stx2-converting_phage	8.0e-29	100.0
WP_021293442.1\|2475391_2476009_-	hypothetical protein	NA	NA	NA	NA
WP_001204795.1\|2476075_2476468_-	antitermination protein Q	Q8W638	Enterobacteria_phage	2.7e-36	57.6
WP_001202274.1\|2476485_2477475_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	2.0e-192	98.2
WP_001065352.1\|2477527_2477785_-	hypothetical protein	Q8W639	Enterobacteria_phage	1.2e-21	71.1
WP_000203853.1\|2477781_2479182_-	replicative DNA helicase	Q8W640	Enterobacteria_phage	4.1e-244	92.0
WP_000988196.1\|2479178_2480057_-	ATP-binding protein	Q8W641	Enterobacteria_phage	2.0e-140	96.0
WP_087661265.1\|2480067_2480994_-	helix-turn-helix domain-containing protein	Q8W642	Enterobacteria_phage	9.6e-157	92.9
WP_000618002.1\|2480990_2481215_-	hypothetical protein	A0A1C9II64	Salmonella_phage	9.8e-15	52.1
WP_024173711.1\|2481211_2482075_-	hypothetical protein	S5MQL6	Escherichia_phage	8.8e-128	82.5
WP_040077782.1\|2482052_2482232_-	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	1.7e-25	86.4
WP_001090267.1\|2482251_2482959_-	DNA-binding protein	Q8W645	Enterobacteria_phage	3.8e-105	81.6
WP_000944728.1\|2483040_2483274_-	Cro/Cl family transcriptional regulator	A0A1B5FPK9	Escherichia_phage	1.2e-28	77.0
WP_000800143.1\|2483430_2484120_+	LexA family transcriptional regulator	A0A1B5FPF4	Escherichia_phage	6.8e-115	87.8
WP_000387833.1\|2484267_2484960_+	helix-turn-helix domain-containing protein	A0A1B5FPB8	Escherichia_phage	1.0e-38	63.6
WP_000147360.1\|2484965_2485166_+	hypothetical protein	NA	NA	NA	NA
WP_000553978.1\|2485363_2485546_+	hypothetical protein	Q8W652	Enterobacteria_phage	1.1e-08	50.9
WP_032253186.1\|2485551_2486124_+	hypothetical protein	Q8W653	Enterobacteria_phage	1.0e-76	70.7
WP_000720075.1\|2486493_2487321_+	hypothetical protein	Q8W654	Enterobacteria_phage	4.8e-131	98.9
WP_001373430.1\|2487361_2487733_+	DUF5406 family protein	Q8W655	Enterobacteria_phage	4.7e-62	95.1
WP_001193437.1\|2487924_2488179_+	DUF1233 family excisionase	Q859D3	Escherichia_coli_phage	3.0e-44	100.0
WP_000063646.1\|2488212_2489499_+\|integrase	site-specific integrase	A0A0N7KZF5	Stx2-converting_phage	5.8e-253	100.0
WP_042101647.1\|2489534_2490221_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	3.8e-102	99.5
2489537:2489557	attR	NA	NA	NA	NA
WP_001216961.1\|2490280_2490388_+	protein YohO	NA	NA	NA	NA
WP_000783120.1\|2490368_2491100_-	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA
WP_021542177.1\|2491104_2492031_-	glycine betaine ABC transporter ATP binding protein YehX	G3M9Y6	Bacillus_virus	2.8e-23	30.8

DBSCAN-SWA_10

3028047 : 3035515

Escherichia_phage(66.67%)

integrase,transposase

attL 3025835:3025848|attR 3032948:3032961

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3025835:3025848	attL	NA	NA	NA	NA
WP_000162574.1\|3028047_3028530_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	4.0e-29	46.8
WP_108942571.1\|3029272_3030502_+\|integrase	tyrosine-type recombinase/integrase	A0A1B5FPC6	Escherichia_phage	1.7e-233	99.8
WP_000448925.1\|3030540_3030957_+	hypothetical protein	A0A1B5FPM5	Escherichia_phage	1.1e-72	100.0
WP_108942450.1\|3031028_3032777_-	hypothetical protein	A0A1B5FPH1	Escherichia_phage	0.0e+00	99.7
WP_000577254.1\|3032778_3034497_-	ATP-binding protein	A0A1B5FPD5	Escherichia_phage	3.2e-307	99.8
3032948:3032961	attR	NA	NA	NA	NA
WP_001299388.1\|3034648_3035515_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	3.9e-51	40.2

DBSCAN-SWA_11

3105911 : 3113051

Escherichia_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001272898.1\|3105911_3108473_+	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	1.3e-30	20.6
WP_001141340.1\|3108578_3109235_+	protein-serine/threonine phosphatase	A0A222YWF0	Escherichia_phage	8.0e-49	46.3
WP_001272549.1\|3109285_3110083_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	5.9e-70	56.3
WP_000847985.1\|3110248_3111157_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	3.0e-118	76.9
WP_096968183.1\|3111153_3112416_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	1.4e-134	61.2
WP_001278994.1\|3112412_3113051_+	aldolase	A0A077SK32	Escherichia_phage	1.4e-82	75.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP028121

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP028122

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection