CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP029001	Trueperella pyogenes strain TP4479 chromosome, complete genome	2 crisprs	cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csa3,DEDDh,cas4,WYL,DinG	0	12	3	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP029001_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029001_1

436367-439628

TypeI-E

I-E

Consensus_repeat	Method
GGCTCATCCCCGCCTGCGCGGGGACCAC	CRISPRCasFinder
GGCTCATCCCCGCCTGCGCGGGGACCAC	CRT
GGCTCATCCCCGCCTGCGCGGGGACCAC	PILER-CR

53 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP029001_1

>merge|NZ_CP029001|1|436367-439628|CRISPRCasFinder,CRT,PILER-CR
ACGTCATCCCCGCCTGCGCGGGGACCACTGCGCGACCCGCGACACTTACGACACGTGTGCGGGCTCATCCCCGCCTGCGCGGGGACCACACCAGGCCACGAGGCCAAGAGCTTTCCCGCGTCGGCTCATCCCCGCCTGCGCGGGGACCACACTGAAAGGCAGGATCGGCGCATTGTATGAGGCGGCTCATCCCCGCCCGCGCGGGGACCACCACGCCCGCCGCTACATTTCACACATGTGCGTGGGCTCATCCCCGCCTGCGCGGGGACCACCACTTGAAGTAGTTAAAACGTGGGTAGAAACCGGGCTCATCCCCGCCTGCGCGGGGACCACCCGGTTATATCGCGCCACCACTGCAGGCCCGGCGGCTCATCCCCGCCTGCGCGGGGACCACACGCCGGTCGCGGTAATCGTCTGCTCGATCCCGGGCTCATCCCCGCCTGCGCGGGGACCACAGACCTCGCCGTGTGGGACTCTCTTCGGTGGAAGGCTCATCCCCGCCTGCGCGGGGACCACGACATACGCAAACCGCTCGTAAGATCCGCGAACGGCTCATCCCCGCCTGCGCGGGGACCACTCGTGGTTCGTCGCCTCGATATGCGAGATGACGGGCTCATCCCCGCCTGCGCGGGGACCACGTCATCCACCACCGTCACGATACCCGGCATGGCGGCTCATCCCCGCCTGCGCGGGGACCACTTATTCGGTGATCAGATATAGGACGTCGTGCTCGGCTCATCCCCGCCTGCGCGGGGACCACAACTCCGCCCACTGGCGGCCACCATACCCAAAAGGCTCATCCCCGCCTGCGCGGGGACCACCCGGTATCGGCCTTGATCTGTGCCGTCACACGCGGCTCATCCCCGCCTGCGCGGGGACCACGCCGGTGTGCTCAACCGTGGCCAAATTGTGCCAGGCTCATCCCCGCCTGCGCGGGGACCACGCTGTATTGACAGCGTTCCTAAACCCCTCGTGCGGCTCATCCCCGCCTGCGCAGGGACCACCTGTCCTATTCGGGTGGCGGGATCAAGGTCGCGGGCTCATCCCCGCCTGCGCGGGGACCACTCGATGGTGGCGGCCGTGTAGTGCGTGGCACTGGGCTCATCCCCGCCTGCGCGGGGACCACCGGGTCGGCGTGAGCCTGCCCGGCCACTACCGGGGCTCATCCCCGCCTGCGCGGGGACCACTGACGGGTTATTGGCGGAGAACGCCCCTTTGACGGCTCATCCCCGCCTGCGCGGGGACCACGTGGTCTTGCCAGCCGGGCGGCTCCTTTTCGGCGGCTCATCCCCGCCTGCGCGGGGACCACAGCGAGGGTACGTATCGTGGTTTTCATTCGCGGGGCTCATCCCCGCCTGCGCGGGGACCACTTGTGATGCATGCTCTGGCGCGAGGAGCCAAGCGGCTCATCCCCGCCTGCGCGGGGACCACGATACCATGCCGACCACCGTGCAAAACCATGTCGGCTCATCCCCGCCTGCGCGGGGACCACGTTTCCGGCGTGTGGTCGGTGGGCTGGGCGCTGGGCTCATCCCCGCCTGCGCGGGGACCACCGGTGAGAACGGTAACGAGCGCGCCGAGCGCGGGGCTCATCCCCGCCTGCGCGGGGACCACGCGACGCATTCCGAAAGGTCCATCTTTCCCTCCGGCTCATCCCCGCCTGCGCGGGGACCACCCTGCGAAGGCAGGGGTTTTCACCCTAGACGAGGGCTCATCCCCGCCTGCGCGGGGACCACAGGAGCAGCCACACGTAAAGGGCAAGCTCATCAGGCTCATCCCCGCCTGCGCGGGGACCACGCGTACACGTCACGGGTTTGCCCGTTGGGCAGGGGCTCATCCCCGCCTGCGCGGGGACCACTTGTAGGTTGTAACCCGATCGTCGTGGTCATTGGGCTCATCCCCGCCTGCGCGGGGACCACAAGCCTCTGGAACGGTTGAACCCGCCCACGCGGGGCTCATCCCCGCCTGCGCGGGGACCACCACCCTGGCTGCCACATTAACGCTGAATGATCGGGCTCATCCCCGCCTGCGCGGGGACCACATCGCGGTAAATATCCGCGCTGACGTCGAGCAGGGCTCATCCCCGCCTGCGCGGGGACCACCCACCTAGGGAAATCCCGGCATCCACCAAGGCGGGCTCATCCCCGCCTGCGCGGGGACCACGCAAGCGAATACGCCGCAACCCATGTAACAGACGGCTCATCCCCGCCTGCGCGGGGACCACAGAGGGCGTAGGCCGCGAACTTGGTGTACGGGGGGCTCATCCCCGCCTGCGCGGGGACCACGTACGAAGCCTACTGGCAAGGAGAAGAACCGTGGGCTCATCCCCGCCTGCGCGGGGACCACGCCGATGTCGGCACGGCGTGAGGCGCCGGCGTGGGCTCATCCCCGCCTGCGCGGGGACCACCACCGACTTCTCTACGGCCAAGGATCTTTCTACGGCTCATCCCCGCCTGCGCGGGGACCACACGCGAACGGCATGCCATCAAAGCAGTACGGGCGGCTCATCCCCGCCTGCGCGGGGACCACACGTGCCGACTCAGCCGCTTCACCTACTGGGGCGGCTCATCCCCGCCTGCGCGGGGACCACGTCTTGTTTCCAGCCCGCAGGCATCGGGATTGGGGCTCATCCCCGCCTGCGCGGGGACCACAAGCCGACCGCGTACAGCACCACCTTCGAGACCGGCTCATCCCCGCCTGCGCGGGGACCACATCACGCGCTACATCTCCGACGAGCACCAATTAGGCTCATCCCCGCCTGCGCGGGGACCACCCTTTTTGCCAATGATCCGGATGGCAAAACTACGGCTCATCCCCGCCTGCGCGGGGACCACCTGATTTTGTTGCTCCTGCTGACCTCAAAAATGGGCTCATCCCCGCCTGCGCGGGGACCACATGTTTCGTGGGTGTCCCGGTAGGGTAGGTTGGGGCTCATCCCCGCCTGCGCGGGGACCACTGCGTCTGGCTGGTGCGGGTAAGCAGATTGGGCGGCTCATCCCCGCCTGCGCGGGGACCACCTACTGTGGGGCGCACTGTCCGCGTCACCAATGGGCTCATCCCCGCCTGCGCGGGGACCACCCACAGACCGCGGCCAGCTCGCCAAATGGGTAAGGCTCATCCCCGCCTGCGCGGGGACCACCCTACAAATCGTCGGCCTATACGAATACGCCACGGCTCATCCCCGCCTGCGCGGGGACCACTGTGGCGCCAGTGGAGGTTGGTGGTGCCACATGTGGCTCATCCCCGCCTGCGCGGGGACCAC

>NZ_CP029001|1|1|436367-439628|CRISPRCasFinder
ACGTCATCCCCGCCTGCGCGGGGACCAC	TGCGCGACCCGCGACACTTACGACACGTGTGCG
GGCTCATCCCCGCCTGCGCGGGGACCAC	ACCAGGCCACGAGGCCAAGAGCTTTCCCGCGTC
GGCTCATCCCCGCCTGCGCGGGGACCAC	ACTGAAAGGCAGGATCGGCGCATTGTATGAGGC
GGCTCATCCCCGCCCGCGCGGGGACCAC	CACGCCCGCCGCTACATTTCACACATGTGCGTG
GGCTCATCCCCGCCTGCGCGGGGACCAC	CACTTGAAGTAGTTAAAACGTGGGTAGAAACCG
GGCTCATCCCCGCCTGCGCGGGGACCAC	CCGGTTATATCGCGCCACCACTGCAGGCCCGGC
GGCTCATCCCCGCCTGCGCGGGGACCAC	ACGCCGGTCGCGGTAATCGTCTGCTCGATCCCG
GGCTCATCCCCGCCTGCGCGGGGACCAC	AGACCTCGCCGTGTGGGACTCTCTTCGGTGGAA
GGCTCATCCCCGCCTGCGCGGGGACCAC	GACATACGCAAACCGCTCGTAAGATCCGCGAAC
GGCTCATCCCCGCCTGCGCGGGGACCAC	TCGTGGTTCGTCGCCTCGATATGCGAGATGACG
GGCTCATCCCCGCCTGCGCGGGGACCAC	GTCATCCACCACCGTCACGATACCCGGCATGGC
GGCTCATCCCCGCCTGCGCGGGGACCAC	TTATTCGGTGATCAGATATAGGACGTCGTGCTC
GGCTCATCCCCGCCTGCGCGGGGACCAC	AACTCCGCCCACTGGCGGCCACCATACCCAAAA
GGCTCATCCCCGCCTGCGCGGGGACCAC	CCGGTATCGGCCTTGATCTGTGCCGTCACACGC
GGCTCATCCCCGCCTGCGCGGGGACCAC	GCCGGTGTGCTCAACCGTGGCCAAATTGTGCCA
GGCTCATCCCCGCCTGCGCGGGGACCAC	GCTGTATTGACAGCGTTCCTAAACCCCTCGTGC
GGCTCATCCCCGCCTGCGCAGGGACCAC	CTGTCCTATTCGGGTGGCGGGATCAAGGTCGCG
GGCTCATCCCCGCCTGCGCGGGGACCAC	TCGATGGTGGCGGCCGTGTAGTGCGTGGCACTG
GGCTCATCCCCGCCTGCGCGGGGACCAC	CGGGTCGGCGTGAGCCTGCCCGGCCACTACCGG
GGCTCATCCCCGCCTGCGCGGGGACCAC	TGACGGGTTATTGGCGGAGAACGCCCCTTTGAC
GGCTCATCCCCGCCTGCGCGGGGACCAC	GTGGTCTTGCCAGCCGGGCGGCTCCTTTTCGGC
GGCTCATCCCCGCCTGCGCGGGGACCAC	AGCGAGGGTACGTATCGTGGTTTTCATTCGCGG
GGCTCATCCCCGCCTGCGCGGGGACCAC	TTGTGATGCATGCTCTGGCGCGAGGAGCCAAGC
GGCTCATCCCCGCCTGCGCGGGGACCAC	GATACCATGCCGACCACCGTGCAAAACCATGTC
GGCTCATCCCCGCCTGCGCGGGGACCAC	GTTTCCGGCGTGTGGTCGGTGGGCTGGGCGCTG
GGCTCATCCCCGCCTGCGCGGGGACCAC	CGGTGAGAACGGTAACGAGCGCGCCGAGCGCGG
GGCTCATCCCCGCCTGCGCGGGGACCAC	GCGACGCATTCCGAAAGGTCCATCTTTCCCTCC
GGCTCATCCCCGCCTGCGCGGGGACCAC	CCTGCGAAGGCAGGGGTTTTCACCCTAGACGAG
GGCTCATCCCCGCCTGCGCGGGGACCAC	AGGAGCAGCCACACGTAAAGGGCAAGCTCATCA
GGCTCATCCCCGCCTGCGCGGGGACCAC	GCGTACACGTCACGGGTTTGCCCGTTGGGCAGG
GGCTCATCCCCGCCTGCGCGGGGACCAC	TTGTAGGTTGTAACCCGATCGTCGTGGTCATTG
GGCTCATCCCCGCCTGCGCGGGGACCAC	AAGCCTCTGGAACGGTTGAACCCGCCCACGCGG
GGCTCATCCCCGCCTGCGCGGGGACCAC	CACCCTGGCTGCCACATTAACGCTGAATGATCG
GGCTCATCCCCGCCTGCGCGGGGACCAC	ATCGCGGTAAATATCCGCGCTGACGTCGAGCAG
GGCTCATCCCCGCCTGCGCGGGGACCAC	CCACCTAGGGAAATCCCGGCATCCACCAAGGCG
GGCTCATCCCCGCCTGCGCGGGGACCAC	GCAAGCGAATACGCCGCAACCCATGTAACAGAC
GGCTCATCCCCGCCTGCGCGGGGACCAC	AGAGGGCGTAGGCCGCGAACTTGGTGTACGGGG
GGCTCATCCCCGCCTGCGCGGGGACCAC	GTACGAAGCCTACTGGCAAGGAGAAGAACCGTG
GGCTCATCCCCGCCTGCGCGGGGACCAC	GCCGATGTCGGCACGGCGTGAGGCGCCGGCGTG
GGCTCATCCCCGCCTGCGCGGGGACCAC	CACCGACTTCTCTACGGCCAAGGATCTTTCTAC
GGCTCATCCCCGCCTGCGCGGGGACCAC	ACGCGAACGGCATGCCATCAAAGCAGTACGGGC
GGCTCATCCCCGCCTGCGCGGGGACCAC	ACGTGCCGACTCAGCCGCTTCACCTACTGGGGC
GGCTCATCCCCGCCTGCGCGGGGACCAC	GTCTTGTTTCCAGCCCGCAGGCATCGGGATTGG
GGCTCATCCCCGCCTGCGCGGGGACCAC	AAGCCGACCGCGTACAGCACCACCTTCGAGACC
GGCTCATCCCCGCCTGCGCGGGGACCAC	ATCACGCGCTACATCTCCGACGAGCACCAATTA
GGCTCATCCCCGCCTGCGCGGGGACCAC	CCTTTTTGCCAATGATCCGGATGGCAAAACTAC
GGCTCATCCCCGCCTGCGCGGGGACCAC	CTGATTTTGTTGCTCCTGCTGACCTCAAAAATG
GGCTCATCCCCGCCTGCGCGGGGACCAC	ATGTTTCGTGGGTGTCCCGGTAGGGTAGGTTGG
GGCTCATCCCCGCCTGCGCGGGGACCAC	TGCGTCTGGCTGGTGCGGGTAAGCAGATTGGGC
GGCTCATCCCCGCCTGCGCGGGGACCAC	CTACTGTGGGGCGCACTGTCCGCGTCACCAATG
GGCTCATCCCCGCCTGCGCGGGGACCAC	CCACAGACCGCGGCCAGCTCGCCAAATGGGTAA
GGCTCATCCCCGCCTGCGCGGGGACCAC	CCTACAAATCGTCGGCCTATACGAATACGCCAC
GGCTCATCCCCGCCTGCGCGGGGACCAC	TGTGGCGCCAGTGGAGGTTGGTGGTGCCACATGT
GGCTCATCCCCGCCTGCGCGGGGACCAC

>NZ_CP029001|1|1|436367-439628|CRT
ACGTCATCCCCGCCTGCGCGGGGACCAC	TGCGCGACCCGCGACACTTACGACACGTGTGCG
GGCTCATCCCCGCCTGCGCGGGGACCAC	ACCAGGCCACGAGGCCAAGAGCTTTCCCGCGTC
GGCTCATCCCCGCCTGCGCGGGGACCAC	ACTGAAAGGCAGGATCGGCGCATTGTATGAGGC
GGCTCATCCCCGCCCGCGCGGGGACCAC	CACGCCCGCCGCTACATTTCACACATGTGCGTG
GGCTCATCCCCGCCTGCGCGGGGACCAC	CACTTGAAGTAGTTAAAACGTGGGTAGAAACCG
GGCTCATCCCCGCCTGCGCGGGGACCAC	CCGGTTATATCGCGCCACCACTGCAGGCCCGGC
GGCTCATCCCCGCCTGCGCGGGGACCAC	ACGCCGGTCGCGGTAATCGTCTGCTCGATCCCG
GGCTCATCCCCGCCTGCGCGGGGACCAC	AGACCTCGCCGTGTGGGACTCTCTTCGGTGGAA
GGCTCATCCCCGCCTGCGCGGGGACCAC	GACATACGCAAACCGCTCGTAAGATCCGCGAAC
GGCTCATCCCCGCCTGCGCGGGGACCAC	TCGTGGTTCGTCGCCTCGATATGCGAGATGACG
GGCTCATCCCCGCCTGCGCGGGGACCAC	GTCATCCACCACCGTCACGATACCCGGCATGGC
GGCTCATCCCCGCCTGCGCGGGGACCAC	TTATTCGGTGATCAGATATAGGACGTCGTGCTC
GGCTCATCCCCGCCTGCGCGGGGACCAC	AACTCCGCCCACTGGCGGCCACCATACCCAAAA
GGCTCATCCCCGCCTGCGCGGGGACCAC	CCGGTATCGGCCTTGATCTGTGCCGTCACACGC
GGCTCATCCCCGCCTGCGCGGGGACCAC	GCCGGTGTGCTCAACCGTGGCCAAATTGTGCCA
GGCTCATCCCCGCCTGCGCGGGGACCAC	GCTGTATTGACAGCGTTCCTAAACCCCTCGTGC
GGCTCATCCCCGCCTGCGCAGGGACCAC	CTGTCCTATTCGGGTGGCGGGATCAAGGTCGCG
GGCTCATCCCCGCCTGCGCGGGGACCAC	TCGATGGTGGCGGCCGTGTAGTGCGTGGCACTG
GGCTCATCCCCGCCTGCGCGGGGACCAC	CGGGTCGGCGTGAGCCTGCCCGGCCACTACCGG
GGCTCATCCCCGCCTGCGCGGGGACCAC	TGACGGGTTATTGGCGGAGAACGCCCCTTTGAC
GGCTCATCCCCGCCTGCGCGGGGACCAC	GTGGTCTTGCCAGCCGGGCGGCTCCTTTTCGGC
GGCTCATCCCCGCCTGCGCGGGGACCAC	AGCGAGGGTACGTATCGTGGTTTTCATTCGCGG
GGCTCATCCCCGCCTGCGCGGGGACCAC	TTGTGATGCATGCTCTGGCGCGAGGAGCCAAGC
GGCTCATCCCCGCCTGCGCGGGGACCAC	GATACCATGCCGACCACCGTGCAAAACCATGTC
GGCTCATCCCCGCCTGCGCGGGGACCAC	GTTTCCGGCGTGTGGTCGGTGGGCTGGGCGCTG
GGCTCATCCCCGCCTGCGCGGGGACCAC	CGGTGAGAACGGTAACGAGCGCGCCGAGCGCGG
GGCTCATCCCCGCCTGCGCGGGGACCAC	GCGACGCATTCCGAAAGGTCCATCTTTCCCTCC
GGCTCATCCCCGCCTGCGCGGGGACCAC	CCTGCGAAGGCAGGGGTTTTCACCCTAGACGAG
GGCTCATCCCCGCCTGCGCGGGGACCAC	AGGAGCAGCCACACGTAAAGGGCAAGCTCATCA
GGCTCATCCCCGCCTGCGCGGGGACCAC	GCGTACACGTCACGGGTTTGCCCGTTGGGCAGG
GGCTCATCCCCGCCTGCGCGGGGACCAC	TTGTAGGTTGTAACCCGATCGTCGTGGTCATTG
GGCTCATCCCCGCCTGCGCGGGGACCAC	AAGCCTCTGGAACGGTTGAACCCGCCCACGCGG
GGCTCATCCCCGCCTGCGCGGGGACCAC	CACCCTGGCTGCCACATTAACGCTGAATGATCG
GGCTCATCCCCGCCTGCGCGGGGACCAC	ATCGCGGTAAATATCCGCGCTGACGTCGAGCAG
GGCTCATCCCCGCCTGCGCGGGGACCAC	CCACCTAGGGAAATCCCGGCATCCACCAAGGCG
GGCTCATCCCCGCCTGCGCGGGGACCAC	GCAAGCGAATACGCCGCAACCCATGTAACAGAC
GGCTCATCCCCGCCTGCGCGGGGACCAC	AGAGGGCGTAGGCCGCGAACTTGGTGTACGGGG
GGCTCATCCCCGCCTGCGCGGGGACCAC	GTACGAAGCCTACTGGCAAGGAGAAGAACCGTG
GGCTCATCCCCGCCTGCGCGGGGACCAC	GCCGATGTCGGCACGGCGTGAGGCGCCGGCGTG
GGCTCATCCCCGCCTGCGCGGGGACCAC	CACCGACTTCTCTACGGCCAAGGATCTTTCTAC
GGCTCATCCCCGCCTGCGCGGGGACCAC	ACGCGAACGGCATGCCATCAAAGCAGTACGGGC
GGCTCATCCCCGCCTGCGCGGGGACCAC	ACGTGCCGACTCAGCCGCTTCACCTACTGGGGC
GGCTCATCCCCGCCTGCGCGGGGACCAC	GTCTTGTTTCCAGCCCGCAGGCATCGGGATTGG
GGCTCATCCCCGCCTGCGCGGGGACCAC	AAGCCGACCGCGTACAGCACCACCTTCGAGACC
GGCTCATCCCCGCCTGCGCGGGGACCAC	ATCACGCGCTACATCTCCGACGAGCACCAATTA
GGCTCATCCCCGCCTGCGCGGGGACCAC	CCTTTTTGCCAATGATCCGGATGGCAAAACTAC
GGCTCATCCCCGCCTGCGCGGGGACCAC	CTGATTTTGTTGCTCCTGCTGACCTCAAAAATG
GGCTCATCCCCGCCTGCGCGGGGACCAC	ATGTTTCGTGGGTGTCCCGGTAGGGTAGGTTGG
GGCTCATCCCCGCCTGCGCGGGGACCAC	TGCGTCTGGCTGGTGCGGGTAAGCAGATTGGGC
GGCTCATCCCCGCCTGCGCGGGGACCAC	CTACTGTGGGGCGCACTGTCCGCGTCACCAATG
GGCTCATCCCCGCCTGCGCGGGGACCAC	CCACAGACCGCGGCCAGCTCGCCAAATGGGTAA
GGCTCATCCCCGCCTGCGCGGGGACCAC	CCTACAAATCGTCGGCCTATACGAATACGCCAC
GGCTCATCCCCGCCTGCGCGGGGACCAC	TGTGGCGCCAGTGGAGGTTGGTGGTGCCACATGT
GGCTCATCCCCGCCTGCGCGGGGACCAC

>NZ_CP029001|1|1|436428-439628|PILER-CR
GGCTCATCCCCGCCTGCGCGGGGACCAC	ACCAGGCCACGAGGCCAAGAGCTTTCCCGCGTC
GGCTCATCCCCGCCTGCGCGGGGACCAC	ACTGAAAGGCAGGATCGGCGCATTGTATGAGGC
GGCTCATCCCCGCCCGCGCGGGGACCAC	CACGCCCGCCGCTACATTTCACACATGTGCGTG
GGCTCATCCCCGCCTGCGCGGGGACCAC	CACTTGAAGTAGTTAAAACGTGGGTAGAAACCG
GGCTCATCCCCGCCTGCGCGGGGACCAC	CCGGTTATATCGCGCCACCACTGCAGGCCCGGC
GGCTCATCCCCGCCTGCGCGGGGACCAC	ACGCCGGTCGCGGTAATCGTCTGCTCGATCCCG
GGCTCATCCCCGCCTGCGCGGGGACCAC	AGACCTCGCCGTGTGGGACTCTCTTCGGTGGAA
GGCTCATCCCCGCCTGCGCGGGGACCAC	GACATACGCAAACCGCTCGTAAGATCCGCGAAC
GGCTCATCCCCGCCTGCGCGGGGACCAC	TCGTGGTTCGTCGCCTCGATATGCGAGATGACG
GGCTCATCCCCGCCTGCGCGGGGACCAC	GTCATCCACCACCGTCACGATACCCGGCATGGC
GGCTCATCCCCGCCTGCGCGGGGACCAC	TTATTCGGTGATCAGATATAGGACGTCGTGCTC
GGCTCATCCCCGCCTGCGCGGGGACCAC	AACTCCGCCCACTGGCGGCCACCATACCCAAAA
GGCTCATCCCCGCCTGCGCGGGGACCAC	CCGGTATCGGCCTTGATCTGTGCCGTCACACGC
GGCTCATCCCCGCCTGCGCGGGGACCAC	GCCGGTGTGCTCAACCGTGGCCAAATTGTGCCA
GGCTCATCCCCGCCTGCGCGGGGACCAC	GCTGTATTGACAGCGTTCCTAAACCCCTCGTGC
GGCTCATCCCCGCCTGCGCAGGGACCAC	CTGTCCTATTCGGGTGGCGGGATCAAGGTCGCG
GGCTCATCCCCGCCTGCGCGGGGACCAC	TCGATGGTGGCGGCCGTGTAGTGCGTGGCACTG
GGCTCATCCCCGCCTGCGCGGGGACCAC	CGGGTCGGCGTGAGCCTGCCCGGCCACTACCGG
GGCTCATCCCCGCCTGCGCGGGGACCAC	TGACGGGTTATTGGCGGAGAACGCCCCTTTGAC
GGCTCATCCCCGCCTGCGCGGGGACCAC	GTGGTCTTGCCAGCCGGGCGGCTCCTTTTCGGC
GGCTCATCCCCGCCTGCGCGGGGACCAC	AGCGAGGGTACGTATCGTGGTTTTCATTCGCGG
GGCTCATCCCCGCCTGCGCGGGGACCAC	TTGTGATGCATGCTCTGGCGCGAGGAGCCAAGC
GGCTCATCCCCGCCTGCGCGGGGACCAC	GATACCATGCCGACCACCGTGCAAAACCATGTC
GGCTCATCCCCGCCTGCGCGGGGACCAC	GTTTCCGGCGTGTGGTCGGTGGGCTGGGCGCTG
GGCTCATCCCCGCCTGCGCGGGGACCAC	CGGTGAGAACGGTAACGAGCGCGCCGAGCGCGG
GGCTCATCCCCGCCTGCGCGGGGACCAC	GCGACGCATTCCGAAAGGTCCATCTTTCCCTCC
GGCTCATCCCCGCCTGCGCGGGGACCAC	CCTGCGAAGGCAGGGGTTTTCACCCTAGACGAG
GGCTCATCCCCGCCTGCGCGGGGACCAC	AGGAGCAGCCACACGTAAAGGGCAAGCTCATCA
GGCTCATCCCCGCCTGCGCGGGGACCAC	GCGTACACGTCACGGGTTTGCCCGTTGGGCAGG
GGCTCATCCCCGCCTGCGCGGGGACCAC	TTGTAGGTTGTAACCCGATCGTCGTGGTCATTG
GGCTCATCCCCGCCTGCGCGGGGACCAC	AAGCCTCTGGAACGGTTGAACCCGCCCACGCGG
GGCTCATCCCCGCCTGCGCGGGGACCAC	CACCCTGGCTGCCACATTAACGCTGAATGATCG
GGCTCATCCCCGCCTGCGCGGGGACCAC	ATCGCGGTAAATATCCGCGCTGACGTCGAGCAG
GGCTCATCCCCGCCTGCGCGGGGACCAC	CCACCTAGGGAAATCCCGGCATCCACCAAGGCG
GGCTCATCCCCGCCTGCGCGGGGACCAC	GCAAGCGAATACGCCGCAACCCATGTAACAGAC
GGCTCATCCCCGCCTGCGCGGGGACCAC	AGAGGGCGTAGGCCGCGAACTTGGTGTACGGGG
GGCTCATCCCCGCCTGCGCGGGGACCAC	GTACGAAGCCTACTGGCAAGGAGAAGAACCGTG
GGCTCATCCCCGCCTGCGCGGGGACCAC	GCCGATGTCGGCACGGCGTGAGGCGCCGGCGTG
GGCTCATCCCCGCCTGCGCGGGGACCAC	CACCGACTTCTCTACGGCCAAGGATCTTTCTAC
GGCTCATCCCCGCCTGCGCGGGGACCAC	ACGCGAACGGCATGCCATCAAAGCAGTACGGGC
GGCTCATCCCCGCCTGCGCGGGGACCAC	ACGTGCCGACTCAGCCGCTTCACCTACTGGGGC
GGCTCATCCCCGCCTGCGCGGGGACCAC	GTCTTGTTTCCAGCCCGCAGGCATCGGGATTGG
GGCTCATCCCCGCCTGCGCGGGGACCAC	AAGCCGACCGCGTACAGCACCACCTTCGAGACC
GGCTCATCCCCGCCTGCGCGGGGACCAC	ATCACGCGCTACATCTCCGACGAGCACCAATTA
GGCTCATCCCCGCCTGCGCGGGGACCAC	CCTTTTTGCCAATGATCCGGATGGCAAAACTAC
GGCTCATCCCCGCCTGCGCGGGGACCAC	CTGATTTTGTTGCTCCTGCTGACCTCAAAAATG
GGCTCATCCCCGCCTGCGCGGGGACCAC	ATGTTTCGTGGGTGTCCCGGTAGGGTAGGTTGG
GGCTCATCCCCGCCTGCGCGGGGACCAC	TGCGTCTGGCTGGTGCGGGTAAGCAGATTGGGC
GGCTCATCCCCGCCTGCGCGGGGACCAC	CTACTGTGGGGCGCACTGTCCGCGTCACCAATG
GGCTCATCCCCGCCTGCGCGGGGACCAC	CCACAGACCGCGGCCAGCTCGCCAAATGGGTAA
GGCTCATCCCCGCCTGCGCGGGGACCAC	CCTACAAATCGTCGGCCTATACGAATACGCCAC
GGCTCATCCCCGCCTGCGCGGGGACCAC	TGTGGCGCCAGTGGAGGTTGGTGGTGCCACATGT
GGCTCATCCCCGCCTGCGCGGGGACCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029001.1\|WP_108726137.1\|446266_449122_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
NZ_CP029001.1\|WP_108726133.1\|440151_441084_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP029001.1\|WP_108726125.1\|423495_426228_-\|pyruvate,-phosphate-dikinase	unknown	unknown	gnl\|CDD\|236446
NZ_CP029001.1\|WP_108726131.1\|435668_435872_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	unknown	unknown	gnl\|CDD\|281658
NZ_CP029001.1\|WP_159081051.1\|434657_435521_+\|Abi-family-protein	unknown	unknown	gnl\|CDD\|377910
NZ_CP029001.1\|WP_108726127.1\|428715_429990_+\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270451
NZ_CP029001.1\|WP_080754080.1\|443614_444259_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|378191
NZ_CP029001.1\|WP_039662977.1\|431826_433524_+\|glycoside-hydrolase-family-13-protein	unknown	unknown	gnl\|CDD\|200471
NZ_CP029001.1\|WP_108726126.1\|427329_428631_-\|ROK-family-protein	unknown	unknown	gnl\|CDD\|224851
NZ_CP029001.1\|WP_080312353.1\|449573_449843_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379228
NZ_CP029001.1\|WP_108726128.1\|429992_430889_+\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_CP029001.1\|WP_108726135.1\|442462_443605_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP029001.1\|WP_039662982.1\|441754_442459_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP029001.1\|WP_080754015.1\|439802_440147_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|378244
NZ_CP029001.1\|WP_159081050.1\|433789_434404_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|376540
NZ_CP029001.1\|WP_108726138.1\|450012_450213_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366234
NZ_CP029001.1\|WP_025296984.1\|430897_431773_+\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP029001.1\|WP_159081052.1\|435899_436196_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|226194
NZ_CP029001.1\|WP_108726134.1\|441086_441755_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|378050
NZ_CP029001.1\|WP_108726136.1\|444285_445983_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|378189

Protein	Function_ID	Function_description	E-value
NZ_CP029001.1\|WP_108726137.1\|446266_449122_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	1.22624e-91
NZ_CP029001.1\|WP_108726133.1\|440151_441084_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	3.15255e-124
NZ_CP029001.1\|WP_108726125.1\|423495_426228_-\|pyruvate,-phosphate-dikinase	gnl\|CDD\|236446	PRK09279, PRK09279, pyruvate phosphate dikinase; Provisional.	0
NZ_CP029001.1\|WP_108726131.1\|435668_435872_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	gnl\|CDD\|281658	pfam03693, ParD_antitoxin, Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH. ParD is the antitoxin of a bacterial toxin-antitoxin gene pair. The cognate toxin is ParE in, pfam05016. The family contains several related antitoxins from Cyanobacteria, Proteobacteria and Actinobacteria. Antitoxins of this class carry an N-terminal ribbon-helix-helix domain, RHH, that is highly conserved across all type II bacterial antitoxins, which dimerizes with the RHH domain of a second VapB molecule. A hinge section follows the RHH, with an additional pair of flexible alpha helices at the C-terminus. This C-terminus is the toxin-binding region of the dimer, and so is specific to the cognate toxin, whereas the RHH domain has the specific function of lying across the RNA-binding groove of the toxin dimer and inactivating the active-site - a more general function of all type II antitoxins.	1.63599e-22
NZ_CP029001.1\|WP_159081051.1\|434657_435521_+\|Abi-family-protein	gnl\|CDD\|377910	pfam07751, Abi_2, Abi-like protein. This family, found in various bacterial species, contains sequences that are similar to the Abi group of proteins, which are involved in bacteriophage resistance mediated by abortive infection in Lactococcus species. The proteins are thought to have helix-turn-helix motifs, found in many DNA-binding proteins, allowing them to perform their function.	6.3507e-46
NZ_CP029001.1\|WP_108726127.1\|428715_429990_+\|extracellular-solute-binding-protein	gnl\|CDD\|270451	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold. This group includes the periplasmic component of an ABC transport system specific for sn-glycerol-3-phosphate (G3P) and closely related proteins from archaea and bacteria. Under phophate starvation conditions, Escherichia coli can utilize G3P as phosphate source when exclusively imported by an ATP-binding cassette (ABC) transporter composed of the periplasmic binding protein, UgpB, the transmembrane subunits, UgpA and UgpE, and a homodimer of the nucleotide binding subunit, UgpC. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 proteins are comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.07301e-36
NZ_CP029001.1\|WP_080754080.1\|443614_444259_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|378191	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family of proteins, represented by CT1973 from Chlorobaculum tepidum, is encoded by genes found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse2.	1.00351e-35
NZ_CP029001.1\|WP_039662977.1\|431826_433524_+\|glycoside-hydrolase-family-13-protein	gnl\|CDD\|200471	cd11332, AmyAc_OligoGlu_TS, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), trehalose synthase (also called maltose alpha-D-glucosyltransferase), and related proteins. Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomaltooligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. Trehalose synthase (EC 5.4.99.16) catalyzes the isomerization of maltose to produce trehalulose. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
NZ_CP029001.1\|WP_108726126.1\|427329_428631_-\|ROK-family-protein	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	3.74945e-31
NZ_CP029001.1\|WP_080312353.1\|449573_449843_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379228	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	2.88763e-08
NZ_CP029001.1\|WP_108726128.1\|429992_430889_+\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	5.04337e-58
NZ_CP029001.1\|WP_108726135.1\|442462_443605_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	7.57563e-157
NZ_CP029001.1\|WP_039662982.1\|441754_442459_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.09719e-40
NZ_CP029001.1\|WP_080754015.1\|439802_440147_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|378244	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978). This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799. Cas proteins are found adjacent to a characteristic short, palindromic repeat cluster termed CRISPR, a probable mobile DNA element.	5.69141e-42
NZ_CP029001.1\|WP_159081050.1\|433789_434404_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|376540	pfam01381, HTH_3, Helix-turn-helix. This large family of DNA binding helix-turn helix proteins includes Cro and CI. Within Neisseria gonorrhoeae NGO_0477, the full protein fold incorporates a helix-turn-helix motif, but the function of this member is unlikely to be that of a DNA-binding regulator, the function of most other members, so is not necessarily characteristic of the whole family.	1.4257e-14
NZ_CP029001.1\|WP_108726138.1\|450012_450213_+\|hypothetical-protein	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	0.00605369
NZ_CP029001.1\|WP_025296984.1\|430897_431773_+\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	1.73839e-62
NZ_CP029001.1\|WP_159081052.1\|435899_436196_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	5.22771e-19
NZ_CP029001.1\|WP_108726134.1\|441086_441755_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|378050	pfam08798, CRISPR_assoc, CRISPR associated protein. This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	2.28783e-71
NZ_CP029001.1\|WP_108726136.1\|444285_445983_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|378189	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry, represented by CT1972 from Chlorobaculum tepidum, is found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse1.	1.46266e-125

>NZ_CP029001.1|WP_159081052.1|435899_436196_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MKLAFSPLAKVDLSNIRDHTEEKWGPCQAELYLRELQTSLESLTDFPLRDRLRKELESACRSLTGSQHVIFYRCEDDAVVVVRILQRHMDIDSRLSDS
>NZ_CP029001.1|WP_108726131.1|435668_435872_+|type-II-toxin-antitoxin-system-ParD-family-antitoxin
MAIDTSVTLDDHFVEFLSAQVAGGRYASASEVVRAGLRLLEERETKLENLRVALHADEESGVLSPRL
>NZ_CP029001.1|WP_159081051.1|434657_435521_+|Abi-family-protein
MTAKPFLCLSQQAELLVQRGLIVADLCQLEDFLRVNNYYRFSGYAREFQESPREQKNAFVRGITLDRIRDLMELDRQLRQLILEALERIEVTTRSAFAYESGKTYGEGAFYLEKENYLDKTPDLEIHLNKIRSQLMRSGQPAVARYRDGDNLSRVPICVAVETLSFGTLAKICQYLRDDHAVKATADSLSIQKTSFSDTLHAFSNLRNRCAHYGQLWNRSFDIAFKVLPKEKKKAPTFKHPGSYGGILVIRRWLRSFDQSSDWFGRVTDLLEINSEYREGILNPRMK
>NZ_CP029001.1|WP_159081050.1|433789_434404_+|helix-turn-helix-domain-containing-protein
MDLNQIFARHLKAARKKRDITQEHLADLLGVSRQAVSKWENGDGYPEVEKLILLSRELRVSLDSLFALHVASGTDEAEANESTAEASVPTSPPYVRLIQPSERIAISSYDGEKLCLCYDVRATRSIGSGEIKYVLLAITEKGFWNRKEEIIGWYTDLDAVKKEIKAVHAAIAAGETRYQLQFFTPVEVKGMFGAPRVISESRES
>NZ_CP029001.1|WP_039662977.1|431826_433524_+|glycoside-hydrolase-family-13-protein
MSTFPSRHGDTASAEAPWWRQAVVYQIYPRSFADSNGDGLGDLKGITSRADYLAKLGVDAVWLSPFYPSELADGGYDVIDYRDVDPRLGTLADFDEMVAALHSRGINLIVDIVPNHTSNKHVWFQEALTAGRGSAARERYVFREGKGIDGAEPPTDWVSAFGGPAWTRVDDGQWYLHLFASEQPDLNWDNREVHEEFLTTLKFWSDRGVDGFRIDVAHALAKDLTEPLPSWEELKGIPTASGRHPLFDREELGQIYAEWRALFNLYDPPRTAVAEAWVDSTRVPRYASPQSLGQAFNFDLLEADFETEQFAPIIRHNLKLAEYSGSSSTWVLSNHDVVRHATRYGLPNPPRQPGNLTPDEKHGAAWLLTGGTDPMLERERGLRRARAATMLILGLPGSTYLYQGEELGLHEVAEIPAADRQDPTFFRTGQAEIGRDGCRVPLPWTQGGESFGFGDGPAHLPQPEWFNQCAAADGGAAGTLELYREALRLRREFQTAERLEWVESPDKTLRFRRPNGWEVLTNFGTEPIVLDEADAARVVLRSEPASPEVREAMAGESTVWLKPTN
>NZ_CP029001.1|WP_025296984.1|430897_431773_+|carbohydrate-ABC-transporter-permease
MSSAENTPGQGARRVKPGREKISWSTTIVLMLASVTVLLPLYVTITMAFKGTAQAVDGNAFSLPNPFSISGIVEAWRLTNFPVGAGISLAVTAGTVLATVILAAFASYAIVRNWDRKLFRYSFYYLLAAMFIPFPVVALPQIQLTGRVGLDNPLGVVILATMFQLSFSVMLFTAFLRSIPQSLEESARIDGASTWQTFWKIIFPMLAPMAATVAIFAFLYAWNDFMMPSLIISDPELQTLPVRQNLFQNQFSNNYNVAFASYMMAMAPAIVAYAFTQRWVMEGVTQGAVKG
>NZ_CP029001.1|WP_108726128.1|429992_430889_+|sugar-ABC-transporter-permease
MSTIIPASPKARKKRRTEPVYYFFLLPSVILFTLAITIPGLVGIFYSFTDSIGIGDWKFIGLTNYKALFSDPAILQAYLFTFGFAIVTVAVVNLVAFLLALGLTAKIRFTTTLRAIFVVPMVISGIIISYVFNFLFSNSLPALGEALGVSWLETSLLANPNLAWVAIVIVTAWQAIPSTMLIYIAGLLSVPGEVYEAAEIDGASTLQKLTRVTIPLVFGYVVINMILGLKNFLNAYDIIVGLTNGGPGTATRSIAMTIISGFNGGDYAYQMANATIFFFVAIVIALLQLSATRGRNEL
>NZ_CP029001.1|WP_108726127.1|428715_429990_+|extracellular-solute-binding-protein
MSLMNRLLRVAATAIAFALAAVSLAGCSTHSREDIRFTFSKREAIDFMQNVVNEYNSSQDRYNVKLDTSGVDVVSASFVRGNPPDLMLANYNFEVARFVERCALSDLSDTAAAKAADLATFGPLMAQYGECAGQISALPYSIMSSAVIYNKDIFAEHGLTVPHTWSELLDVANRLRDAGIDPFYATFKDEWTVGQGWFDYAIGGSIDVGKFFDKLHEAGDRVGPQSAASFQDLAAPMEKMLKLSVYANRDAAARSYGDGNLAIAQGKAAMYLQGPWAFSEIAKSAPELNLGTFPLPMTEEPKDLAVRVNIDLALMVPADAKNPKGARDFLEYLYQPHIIHAYNASQLGFTPIVGAAAPEDPRVAGMIPYYDAGQIYQGPSVLIPKAIPVHNYAQAIIAEQNAQTYLATLDKDWSRLAYRQPKGD
>NZ_CP029001.1|WP_108726126.1|427329_428631_-|ROK-family-protein
MKPPQSTPSAWFDASVSDWPASHVAVLNYAWGRKEFTASDVMANTGLTRATSIDVLEVLADSGLIVELPNAREACPRAGATAHARVVGQVNAPAAIYRKGRPARRFSFDADAGLVVGVDAGCSHLTAIAADLSGQSVATAHSVAECDPDGDVCVLGPRRREQVRSLIAEAVKQAGRDPGDIYAVCVGVPAPVADDGRSPRHHAGFWQLVNPDLIDELADVGPVVRVENDALLAAVAEGTVGEARGQGSFVTLLAGARMGAGVVIDGHLLRGTHGAVGEMNAFDCVEGVGDTFGFGEYAAKAAAKEIAAGHVDGNGAFGGLAPEEVTGRLVFAAIEAGDADAQAIARDIGRRLARVVTVLQSFYDPAMIVVSGAVGPAMLKVIEEARAAMPDSGASIAPDVVGSRLGAEAVVTGAVAAAVQMACASALDIAVGK
>NZ_CP029001.1|WP_108726125.1|423495_426228_-|pyruvate,-phosphate-dikinase
MTKYVYDFTEGDKDQKDLLGGKGANLAEMTNLGLPVPPGFTITTEACRVYLTEGSAPEVLDVQVTSAIREVEAKMGKHLGDPKDPLLMSVRSGAKFSMPGMMETVLNIGLNDESVIGLAEQSGDERFAWDSYRRLLQMFGKTVLGIEGEPFAEALHALQEEKGYAGDPDMTTEDLQRLVVEFKAIVKESTGEDFPQNPRKQLDLAVVAVFNSWNTERARIYRRREHIPNDIGTAVNVQTMVFGNMGEGSGTGVCFTRDPSTGHSGVYGDYLENAQGEDVVAGIRNTLPLSALGEIDKKSYDELLAIMDRLETHYRDLCDIEFTVQRGKLWMLQTRVGKRTPAAAFRVADQLVDERLITRDEAVTRVTGDQLTSLLFPQFDKKAEKVTITRGMPASPGAAVGEIVMDNATAVARTQAGAKVVLVRRETNPEDLQGMVVSEGILTARGGKTSHAAVVARGMGRCCVVGADDLLVDEIAGTMKVKSSGKEFRVGDIIAIDGTTGEVFEGEVAVTDSPVTTYLAEGLEAGLAAASSDDDKDLVAAVDRIMTHADEKRRMLVRANADSPEDAQRARDFGAQGIGLCRTEHMFLGERRKLIEKMILAHDEETQAAALAELLPYQREDFIGIFGAMDGLPVTVRLIDPPLHEFLPDLTEISVSLAVKEAKGEEITAEERELLAAVKGHHEQNPMLGLRGVRLGLKIPGLIRLQVRAISEAAAQLKKEGKDPKPEIMVPLIGGVRELQIVRDMALEVIAEVSEETGVELDLPIGNMIELPRAAVSADTIAAESDFFSFGTNDLTQTTWGFSRDDVEGTFFNEYFDYGVFGVSPFESVDLGGVGALVDMGVQRGRHTKPDMKMGVCGEHGGDPSSIHFFEKVGLNYVSCSPFRVPVARLEAGRAAIENETTYERRFDHV
>NZ_CP029001.1|WP_080754015.1|439802_440147_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MLVLTVTAVPAGLRGDLTKWLMEIAPGVFVGTPSARIREQIWARTVALCKDGRAIMVCSADNEQGMTFRTHRHDWEPADFDGLTLMIRPDGGQNSQNNQRRTGWSDARHLRKKY
>NZ_CP029001.1|WP_108726133.1|440151_441084_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MTGNPSSTPLDRPLLTRMENRLSFLYVERAVINRDGNALTIQDSRGIAHVPATQIAVVLMGPGTRVTYAAMALLGDAGASAVWVGEKGVRYYAHGRPAAKTAKFAEAHAKIWSNQRSRLRCARRMYAKRFPDENIEHLTMAQLRGREGARMKTIYAVEAQRTGVQWTRRSYDPNDFESGDSINRALTEGSAALYGIAHAVIVGLGFIPALGIIHSGTDRAFVYDVADLYKAEISIPAAFEAVAESAQGDELNVRKRIRDKVVSARLMQRMVRDIQEVMEISEEDAYVDADLFLWNDLEVIPAGINWGSWG
>NZ_CP029001.1|WP_108726134.1|441086_441755_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MATFTRVQLNPARRQGQKYLNNPQALHAAVQASFPSDVVVKNERILWRLDQRGHQHTLYIVGPEMPTAAHIVEEAGWEVRPQETADYDRLLTRIQKDQEWNFELLANPTKTINRGRDRRGRVVAHLSILEQMKWLFRKAESLGVDFGSAEQPTFQVTESKTLNFTKMRGDGTERDRVHLVTARFTGSLKVVDSDRLRHGLVNGIGRAKGYGCGLLTLARGNV
>NZ_CP029001.1|WP_039662982.1|441754_442459_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MQHSLLLLLKGPLQSWGDESRYRTRATGSTPSKSGVIGLLASALGRERTAPLDDLVRLDFAVRVDQPGTLLRDYQTAQPWQKNPNDPAALVTRYFLADAAFVAAVGSEDRGELEGFHRALREPAYPLFLGRRSCPAPARLDLGIVDKPVVDALLDHDVWHATATHKKESARQVELPIYRDGKPGEIGVARQDVPVSFAQRRREYDWRTVVFAGSKIIQNGKSMNRDPYFDEVIS
>NZ_CP029001.1|WP_108726135.1|442462_443605_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTLVIDIHALQTVPPSLINRDDTGAPKSAIFGGVPRQRVSSQAWKRAIRRYFENEIGQEAVGLRSRNLPEVIVNRVMEISPEFGLEEAIEGVQNLFKAPGAKQGIKLVEPKVSKDGEDSDNQSPYPTTAALLFLSPHQIERAAQAIVDADGEKITKAEATDILDTKHSVDMAMFGRMLADAPAFNIDASVQVAHAIGVHESEPEFDYYTAVDDVLEDAEEIGAGMIGTTQMMSSTLYRFATINVEGLATNLGNMDMANKAAVLFIKAFIESMPTGKQNSFANNTLPELVYVAVRNTRSVSLVNAFEDPVGREDSTRRRAAAEALAQEARDIEDIYGMKPLAAYVLATGELGEPFSGLAENVTFQKLSEKVGEVLATAKVE
>NZ_CP029001.1|WP_080754080.1|443614_444259_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MAPPKNHLLQAVHVTCKRLQSDYLSDSSSPGHHKARADLAKLRRYASLDISNNPLALAQALFVMEGEFSEKLAGHGDEPSPSEHAAYIALTLFAIHMQSASQEVHLKGVSFAQACGKLYRKLEGSSDSIKPRIDAMLLAGSERARLVHIRSLITLMRAQEIGFDYGRFAVDLRTLANPKKRAGVQLRWGRDFVRGSYSASPTLDQKTIQLTNNL
>NZ_CP029001.1|WP_108726136.1|444285_445983_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MFSLLDEPWIKAVDAGGNQVVIGIRDVFDGSNEISFIQGESPAQNYAVTRLLLAIFWRAHHPDTEVDPGEAFDHAEWFEDLREQLQDSGKDDAVLGYLKNYADRFDLVGVKHPFMQVADLRVSSGEIKHVSTIVPESQDHYFSMRAGVERDSLSLAEAARWLVYVQAYDYSGIKSGVVGDSRVKGGKGYPIGTGWSGMTGGTLVVGENLLDTLLLNTPKEAILSAEDRPVWERNPDGSDERLTVGESPFPQGAADLATWQSRRVRLHVEDDRVCGVVVSNGDRIPDAGANIFGDPMTPYRYSTNKSKKGKDVYYPRPYDVDRTMWKAFDALVVAETDGGFSEKDKAPKRPKILDNLALLAQEVEGVPPVLNLELVSIEYGPQASSVATTYASQMSLPVIVLMEGSEDLRIQVREAAAVTTKAAVALGQFVGNLGLAAGGDYQFGSAATDRALAELEPRFNTWLRRLADLTAEQASKPNESLGERTANWQKTVRDVIDIQAKIALRGAGPRAFVGRVIDQSEESKGRVVSAYDYYQRLQWALDKNLPRTRSDKGKANQDEMKENAS
>NZ_CP029001.1|WP_108726137.1|446266_449122_-|CRISPR-associated-helicase/endonuclease-Cas3
MDIANRAEIWLNSLSPQAHSLWAKSGNEDAYLRLTQHLIDTACVAEWLWDNWVSDSLKRTLAAIWKLDEQDVRQLYIFFAGVHDVGKASVSFQRIVERRPASYYLLRPIEEAGLSLDWPRGEGPDTKLPHGLASAIFLRKWMLSHGVEEGIVFSLISVVDAHHGFTSDLVLFKNRLEELEGRECRFDDVAMEMLELMASLTGVGEALSKLKKKPVAGALQLMAGLLIMADWIASNENAFPYDVIAPQPERVTEGMALINLPSPWTPVDPPVNVQELFNRTFGWEGSARVRPIQTSAVEAAHSAMGPMLMIVEAPTGEGKTEAGLAAAHVLGQKSGAQGVYVAAPTMATANGLFERVVDWARHSSRGGSVASMYLAHSKNRLSEQFQRLRFAARKEDATSLTRGSDSEENMGGLVAHQWLSGSRKGLLSDFVVGTVDQVLMMALKVRFSMLRHVALAGKVILIDEVHAYDAYMSQYLYRVLQWCARYGMSVILMSATLPPAQRKKLAAAYGSALMRESQAAAEALDVSSYPLVSVVDGNGVRAISVPPRPDDAQIAVHRIDDELGVLRKTLGELLDGGGIALVICNTIRRAQEAYRELSADYPGEVELHHAAFIASDRSAKEDALRERLGSRARRGAGRPWRQIIVATQVAEQSLDIDADVLVTDIAPIDLIIQRAGRIHRHERPLDDRPVKLQKPMVFVRGVYDEGTVPRFDSGTEFIYGEAILLSTMAHLPEVIRRPSDVPELVRRVYDAEPRLPEGWHERWDVAVSKDAENREESIGRAKTFLFPCLAGASDLQNLFDILHDDSRGSGGEEAGSAQVRDTEFSVEVIAVQDTDYGYCAFGNDDDGSEILKGVEPTYQQAIKLAGSSLRLPVRMTKWEKDFDVVVSELEAQTPAEWSNSALLRGQVALRFDRCGEAHVGRFHLNYDREVGLVVTDEEAASSAERTVDKES
>NZ_CP029001.1|WP_080312353.1|449573_449843_+|GNAT-family-N-acetyltransferase
MVGIGLATTELPVLYIYPEYQRQDIGTALLDACLGNAPAYVWLIKNNVRGRAFYRSHGFKLDGTERLFDDDAPGCAEMRKVRGQGQNSS
>NZ_CP029001.1|WP_108726138.1|450012_450213_+|hypothetical-protein
MHGKTLKICNILDEYTREHVAFTVDKEVDMALIIELLDLACLKLAGKPQAIPIEHETKFIANDLET

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP029001_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029001_2

1218735-1218807

Orphan

Consensus_repeat	Method
TCGGCTGCGTCTTTTTCGGCTGTCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029001_2

>merge|NZ_CP029001|2|1218735-1218807|CRISPRCasFinder
TCGGCTGCGTCTTTTTCGGCTGTCTCGAAATCGGTTTGAGCTTTGGTTAGTGCGGCGTCTTTTTCGGCTGCGT

>NZ_CP029001|2|2|1218735-1218807|CRISPRCasFinder
TCGGCTGCGTCTTTTTCGGCTGTCT	CGAAATCGGTTTGAGCTTTGGTT
AGTGCGGCGTCTTTTTCGGCTGCGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029001.1\|WP_108726537.1\|1228806_1229820_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226789
NZ_CP029001.1\|WP_024964643.1\|1211359_1212547_-\|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC	unknown	unknown	gnl\|CDD\|236947
NZ_CP029001.1\|WP_108726536.1\|1223539_1224151_+\|LytR-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|379163
NZ_CP029001.1\|WP_108726534.1\|1219688_1220915_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
NZ_CP029001.1\|WP_024963609.1\|1230707_1231430_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NZ_CP029001.1\|WP_108726532.1\|1216965_1217847_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029001.1\|WP_126720543.1\|1227857_1228400_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029001.1\|WP_024963605.1\|1224419_1226045_+\|chaperonin-GroEL	unknown	unknown	gnl\|CDD\|234573
NZ_CP029001.1\|WP_108726530.1\|1212805_1214344_+\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NZ_CP029001.1\|WP_108726529.1\|1209953_1211225_-\|DUF4032-domain-containing-protein	unknown	unknown	gnl\|CDD\|379077
NZ_CP029001.1\|WP_108726535.1\|1221120_1222452_+\|N-acylglucosamine-2-epimerase	unknown	unknown	gnl\|CDD\|369267
NZ_CP029001.1\|WP_108726526.1\|1206280_1207531_-\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270303
NZ_CP029001.1\|WP_024963602.1\|1222474_1223143_-\|uracil-DNA-glycosylase	unknown	unknown	gnl\|CDD\|235376
NZ_CP029001.1\|WP_039661731.1\|1214416_1215241_+\|thioredoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|239317
NZ_CP029001.1\|WP_108726538.1\|1229922_1230711_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223377
NZ_CP029001.1\|WP_108726527.1\|1207654_1208821_+\|ROK-family-protein	unknown	unknown	gnl\|CDD\|224851
NZ_CP029001.1\|WP_108726531.1\|1216067_1216964_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP029001.1\|WP_108726950.1\|1223230_1223530_+\|DUF3263-domain-containing-protein	unknown	unknown	gnl\|CDD\|378688
NZ_CP029001.1\|WP_108726528.1\|1208853_1209957_+\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_CP029001.1\|WP_108251748.1\|1205284_1206112_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096

Protein	Function_ID	Function_description	E-value
NZ_CP029001.1\|WP_108726537.1\|1228806_1229820_-\|hypothetical-protein	gnl\|CDD\|226789	COG4339, COG4339, Uncharacterized protein conserved in bacteria [Function unknown].	1.31463e-25
NZ_CP029001.1\|WP_024964643.1\|1211359_1212547_-\|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC	gnl\|CDD\|236947	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC.	0
NZ_CP029001.1\|WP_108726536.1\|1223539_1224151_+\|LytR-C-terminal-domain-containing-protein	gnl\|CDD\|379163	pfam13399, LytR_C, LytR cell envelope-related transcriptional attenuator. This family appears at the C-terminus of members of the LytR_cpsA_psr, pfam03816, family.	1.76856e-08
NZ_CP029001.1\|WP_108726534.1\|1219688_1220915_-\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	2.00276e-13
NZ_CP029001.1\|WP_024963609.1\|1230707_1231430_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	2.28051e-39
NZ_CP029001.1\|WP_024963605.1\|1224419_1226045_+\|chaperonin-GroEL	gnl\|CDD\|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
NZ_CP029001.1\|WP_108726530.1\|1212805_1214344_+\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	1.13804e-69
NZ_CP029001.1\|WP_108726526.1\|1206280_1207531_-\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270303	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold. This family includes the periplasmic trehalose/maltose-binding component of an ABC transport system and related proteins from archaea and bacteria. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.13542e-76
NZ_CP029001.1\|WP_108726535.1\|1221120_1222452_+\|N-acylglucosamine-2-epimerase	gnl\|CDD\|369267	pfam07221, GlcNAc_2-epim, N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase). This family contains a number of eukaryotic and bacterial N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) enzymes (EC:5.3.1.8) approximately 500 residues long. This converts N-acyl-D-glucosamine to N-acyl-D-mannosamine.	5.4801e-86
NZ_CP029001.1\|WP_108726529.1\|1209953_1211225_-\|DUF4032-domain-containing-protein	gnl\|CDD\|379077	pfam13224, DUF4032, Domain of unknown function (DUF4032). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, and is approximately 170 amino acids in length. The family is found in association with pfam06293.	2.28264e-96
NZ_CP029001.1\|WP_024963602.1\|1222474_1223143_-\|uracil-DNA-glycosylase	gnl\|CDD\|235376	PRK05254, PRK05254, uracil-DNA glycosylase; Provisional.	2.62843e-121
NZ_CP029001.1\|WP_039661731.1\|1214416_1215241_+\|thioredoxin-domain-containing-protein	gnl\|CDD\|239317	cd03019, DsbA_DsbA, DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.	5.25029e-07
NZ_CP029001.1\|WP_108726538.1\|1229922_1230711_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|223377	COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only].	2.16896e-64
NZ_CP029001.1\|WP_108726527.1\|1207654_1208821_+\|ROK-family-protein	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	1.97692e-15
NZ_CP029001.1\|WP_108726531.1\|1216067_1216964_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	2.94262e-90
NZ_CP029001.1\|WP_108726950.1\|1223230_1223530_+\|DUF3263-domain-containing-protein	gnl\|CDD\|378688	pfam11662, DUF3263, Protein of unknown function (DUF3263). This family of proteins with unknown function appears to be restricted to Actinobacteria.	1.7614e-26
NZ_CP029001.1\|WP_108726528.1\|1208853_1209957_+\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	1.02651e-51
NZ_CP029001.1\|WP_108251748.1\|1205284_1206112_-\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	1.08564e-80

>NZ_CP029001.1|WP_108726532.1|1216965_1217847_+|hypothetical-protein
MSTVSVQKSSSTDLWQIVRTDVKAASLKPAIRITVLIWVLQIVIFAYVIPYILCHTATDAIGLEAAEALRAGLDLSVLGEYVTASVPLYGIPVGVVVGAILVCSDYELKTLGVLLARIPKRWWLGVSRLVTMAVVSLIMALCSFIAAATCSTIFTAIQGTEFGFDFGGTMLGLGATTLGLFSYAVLGSLFGYLTRSILGAVMLGLGWTFGIETLGIGMLSGSSDFFKFLHGVTLTGNIGSLPTALDRTAVLSIQPQLGVNTLHSGSVALLFIICWLVVCASVGIFLLCRRDVS
>NZ_CP029001.1|WP_108726531.1|1216067_1216964_+|ABC-transporter-ATP-binding-protein
MEKVVDCHGLSKTYRTGTVALDGLEFSVEKGAIHGLVGRNGAGKTTLMKCLFNLIRPTSGTINVFGQPAGLMAHNVGGLIEMPAFYNHLNGRQNLALFAGYFGVDGAECGRILELVGLANRAGEKASRYSLGMKQRLGIAIALLGKPELLILDEPVNGLDPQAIAETRDLMRTFRESGTTILLSSHLLGEIEQVCDTVTVLEAGKLVATGTPGQLRQQFNGQAPFELQVGDLAKASQLLGGMGVKVEVEGSSLLAYLPEDMAASDLVRALVNGNIEVGSVKRRDSLEAAYLSMTRKEQ
>NZ_CP029001.1|WP_039661731.1|1214416_1215241_+|thioredoxin-domain-containing-protein
MATKDNAQPATKKERREAAREKARILREQEAKRRRRNKALMIGAAVLVLALIIFAIVQIVGKTNSADDNYKGTARAAKLANVTDDYGIDVNAEGVAGKVVDGAGVLSVYSDYTCGGCINLENQFADTYHAKAKEGSLSVRLYPVATLSNAVSDNATAAMFYVATYAPEQAWAYNDALFKRTADAVSRRGSAPTVADFADIAAKVGVPTDVVNDLPASVSSEEWKAVATAATESFRQKGYTATPTLEVNGKVNDSWLKGGDIMAVIQSAIDAGAK
>NZ_CP029001.1|WP_108726530.1|1212805_1214344_+|serine/threonine-protein-kinase
MRERSMIGGYRIVERIGSGGMSTVYRAIDAEGRAVALKLLHPELAADPLSRARLRREVAMLQRVKSPYVAQILDAETDEEEIFVVTELIEGPTLDRDVRDSGHYTGGDLVELGQELAAALNAIHDAGILHRDLKPSNVMMGADGPILIDFGIAQLGDDLRMTQTGSLAHTPGFCDPVVIRGSAPDTDADWWALAAVLAYAATGRAPFGVGNSPAVMHRVLEGDADLPGLTVAAAEAFRSALSPRRAERISFAELLAVLDGQDDAQLAEPTVTYPPADAELTVTYPPADAEPTRVVPAPPVNAPLTRTSVFDRPEFTNPPPVEHPDIPVAESVPEWAIPPRHARLQVFAASIVVAIFALVQPMESAFVMSVSIVALSWLGGAQRDLKDRRLRNGGAYAGDVAGALLRAPLTLLGAILRSAVSVAVGAGVGWTTASALGFFTHLQPPVIYAASVYLAMVVAWFMGTNSNGREGARYLMEGIAPTVGYRLFWFAITLMVGLAAVVVVSQANVAVI
>NZ_CP029001.1|WP_024964643.1|1211359_1212547_-|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC
MATVTFENATRVYPGATTPAVDALNLEIKDGEFLVLVGPSGCGKSTSLRMLAGLEDVNSGRIYIGDRDVTDVSPKDRDIAMVFQNYALYPHMTVADNMGFALKIAGEKKEVIRQRVEEAAKILDLTQYLDRKPKALSGGQRQRVAMGRAIVRKPQVFLMDEPLSNLDAKLRVQTRTQIASLQRSLGVTTVYVTHDQTEALTMGDRIAVLKDGILQQVASPAEMFSRPANAFVAGFIGSPAMNLGPWRIEGSDAVFGDARFPLPAPVLDAVRADGSLIVGLRPEALEVAGPGEGGIPIKVTFVESLGSDAYVYGTIVGAERESDSFGSGDQSETMVVRIEPYVVPKAGEIVYLKPKAEHTHFFSASTGSRIETGAEAIIENVDNTAAEVRIEDPKA
>NZ_CP029001.1|WP_108726529.1|1209953_1211225_-|DUF4032-domain-containing-protein
MIRALQITSAQVEPALLDLPWNVPLEEWPASIIAALPRGISRHIVRFTYLEGKVVAVKEIGESVAHHEYETLRNLNRLDAPCVEPLAVITGRYDDAGEPLNAALVTHHLPFSLPYRSLFGQASMRVDTVRRLIDALAVLMVRLHLLGFYWGDVSLSNTLFRRDAGEFSAYLVDAETGELEDNLSERKRHYDIDVARVNIIGELMDLQAGAILDSEFDAIAVGNRFEERYRELWSELTSEESFDRSERWRVDARIRRLNDLGFEVGELAMSTDIGGTSISIQPKVVDLGHYSRKLMRLTGLDVEEKQARRLVNDMEYYRTTTGKSNFPLEIVAHEWMMNVYEPTVQAVPPELRAKLQPAQLFHEILEHRWFCSERQGRDVPMAEAVGSYVNDVLAHRRDESRFIGSAADGPTTEEFEIGTIFGD
>NZ_CP029001.1|WP_108726528.1|1208853_1209957_+|Gfo/Idh/MocA-family-oxidoreductase
MTINYGIIGTGYFGAELGRALARLDGAKVLGVFDPANAVQCARELGAEIFASADALINDPRIDAVVVASPNNQHVEPVLAAARAGKAIFAEKPIALNYADCRAMVDAAREAGVVFMAGHVMNFMNGVRLAKRIIAEGRLGRVLHVRAVRTGWEAEQPVATWKKVRALSGGHLYHHIHELDCVQSILGPARFATMVGGNVAHRGIDDVDDMLLIQLQFDDAFATLEYGSAFHWPEHHVLIQGELGAIMIDLQEVGVTVRIGDEEETHLLHRTPEEDRQRADIYASLTTTDGAVQYGHPDEEPPLWLAGIVEEEMTYFHGLMQGEPIAQEFAKLSDGTAAMEAIATADACTLSMKENRKVAIAEITQAV
>NZ_CP029001.1|WP_108726527.1|1207654_1208821_+|ROK-family-protein
MSMHPALIPNAPGDVGVSALMRDNSVHAVLNALSEEPRTFSITELCRMSELSRPTVTRILNDLMAEGLVHTKTATRSHAAGGRKPQLFSLNRKHHCGVVLRVNYDVVEGFALDAAGDVLTDVSDRFSDYGEVAEHLAGVLRKILKDAQCPVFSAAVVVMGIVHRGRVVRSESFPMLNDNLWIDQLNEILREHGHEAQVVALNDAKVAAQWMYDQLVTPEGGPDSMIALHCSEDLGCGLIFDGVLLDGAHGAAGEILQETDGEWMTVSKYLRALESEHGMSIRQLFAAAPALDQETPFVRTLGTLIGKALVPMVLTLDPDTVAVGGAIVDCGTPLIQAIEAELNKATPTPPLVSMAPRGAKSVKEGAKMFVLAQARNATMGLLNGSSRA
>NZ_CP029001.1|WP_108726526.1|1206280_1207531_-|sugar-ABC-transporter-substrate-binding-protein
MKRLLKTATAAAAALALLAGCSGTGSSSETTGANGPTKLNMWVPPLAANNEDKALWDEIVAPFEKENNVDVNITVIPWDAYETKYLTGISSNDGPDVGYMYSEMIGDYIAKNQLVDMTDKVTKEQKDNFYFLKNGEFAGKQYSIPLIVGGARVLFYNKDLLAKAGVDVPTTWDEFLAAGVKLKEAGIKPYTAAWGDPARGAMNHVFFPYLFQAGGKLFADDGSKTLFDSPEMLEAAKFIVKLREKGVLDETTTGTTPETQRKDFEEGKAAFVITSDQDMQKWTEAGINWGTIPSLKGKTEGTFIASDSLTMLKKCTNPDLCYKLISFVTSGPQMEKLHKQAAFPPLGKDEKSNYPEQFAKMYAEKANILHPLPVIPNSAGTYQVLYANLQQMLNGQKTPEQALGDAAKEANELLAK
>NZ_CP029001.1|WP_108251748.1|1205284_1206112_-|sugar-ABC-transporter-permease
MPSFAILLLIALIPILYTAYLSFTKYDVLSDPVWYGTANYEKLATDQKFWSAMKNTVIYTVFTVPLQIFIPMLLADVLAKTEVKWLSSFVRSVLFVPVVASLILVGTVWRYMLSGDTGFFNSVLATVGIDPINFLGNPTWAMVVVIVVSAWKNIGYFLVLFYAGVLDIPGERYEAASVDGANRIQQFFYITIPGLRPVMVLCIILSTIWSFQVFDLVYVMTGGGPGGATTTLVMAIYQQGFKLFQMGSASAIAIVLLGIIVVFSAAQKLIIKEEN
>NZ_CP029001.1|WP_108726534.1|1219688_1220915_-|MFS-transporter
MRSKQGTDAHPFRRYLIAKCLIAAVVAWPVMTLVLQSKGLSYLQIGLLNSFGAAVSLILEVPMGRLADKFGQKHALAFGAAFVALGLGILALSSTTPVIYLSELIMGIGLALSSGADTAWLFAEHKRLSKEGDYLKSRSTIGSVTMLFSASSSVIGPLLFSWGAGISLWTSVVCYLAAAGTWAGLAVHAPSPSDVLDQQDAKRANERHTVFHRLARVFSNNSLFISLAFATTIVMTAVSNYSTYIGPFLQSQGLPVRYLGFVLVVGKIVQWLAIRNTYRLKKSADEARLRVIAVIGFAILLLLALSSASSSAWVGGGAFVLMAGLSSTFFILIDEQVNLVISDKYRSTMLSVVAMFEEFSTIAIDPVIGAALDALGSSRAYLLLAALLCVAFGLAIGLAGVFVRSRRP
>NZ_CP029001.1|WP_108726535.1|1221120_1222452_+|N-acylglucosamine-2-epimerase
MIVNDQLHAWLDSEFSALVDFARRSRSRYGFSTLDARGEADEAAGLQLWINCRMTHVFCLATLRGDESAREFAAHGVTSLRENFYDAAHGGFFANLAYATGKPATDGDVRKAAYAHAFVLLAACSAMQADVAGARELYELAVDAHAHFWEAEFGLVCESFDRGFTLSEAYRGANANMHTLEAMLAAWDATADPRWLDKAGSILTFILGEAERIGWRIPEHFDATWTQLPDFNKDRPADPFRPFGLTPGHGIEWARLALQYWAARTAYDAAQGPSAYEKTDASPSASTGAIDLLPGQARALFGQAIADGWCADGEPGLVYTTDFAGSPVVHERMHWTICEAMSAAAALATHAQRTGEADVVAEMTAWFDTFLDFAKRHLIEAPGRWVHELDRTNAPAGVTWPGKPDVYHAVQCVLMPNLPLTPTFAGALKEKSPAARPYRSRSI
>NZ_CP029001.1|WP_024963602.1|1222474_1223143_-|uracil-DNA-glycosylase
MSLSTIMDPEWAQAMAPMEADIHAMGDFLRAENAAGHGYLPAGKNVLRTFSYPLSKVRVLIVGQDPYPTPGHPIGLSFAVERNVCPIPRSLSNIYRELYDDLGIPPASHGDLTPWCENGVMLLNRVLTVRPGAPASHRGKGWEKITDHAIRTLAQRNQPLVAILWGRQAQELAPLLRTTPTITSAHPSPLSATRGFFGSKPFSRVNALLIEQGAQPIDWRLE
>NZ_CP029001.1|WP_108726950.1|1223230_1223530_+|DUF3263-domain-containing-protein
MTELERAVLRIEREWWRIAATREQAIRSELGMSPSKYYIQLSRMLDCERVWKADPVLVDRLRRLRDGRLAERGMLHDAEPGTSSEFSSGMESRFGADSL
>NZ_CP029001.1|WP_108726536.1|1223539_1224151_+|LytR-C-terminal-domain-containing-protein
MATRYPEDEFDRMAAERNTVGAHRQPPNARSWIIGVIAVLVLAPLLGIGLGKWLAGSEEPTSQPSTSASAPAEQTTTPTPSPAEETSPAPATQEAPKNEPTPSAQPPVVAEPNLGQRILVLNGRGTNGLAGQKAAVLKRAGFGNLNVADYKGGADPVETTVFYASPEFAGTARLAAEKLGIARVVESAEVASKHRTQVVIVLR
>NZ_CP029001.1|WP_024963605.1|1224419_1226045_+|chaperonin-GroEL
MAKIIHFDEEARRGMERGLDLLANTVKVTLGPKGRNVVLDKQWGAPSITNDGVSIAKEIELEDPFERIGAELVKEVAKKTDDVAGDGTTTATVLAQALVKEGLRNVVAGANPIALRRGIDLAVDAVVKQLLADAKEVETREEIAATAGISAGDTEIGELIAEALDKVGKEGVVTVEESNTFGTELELTEGMSFDKGYLSPYFVTDPERQEVVLEDAYVLLVESKISNVKDLLPLLEKVMQTGKPLAIIAEDIEGEALATLVVNKIRGTFKSAAVKAPGFGDRRKEMLQDMAVLTGGQVISETVGLKVENAEIAMLGQARKVVMTKDSTTIVEGAGTAEDIKARVSTIKTQIENSTSDYDREKLQERLAKLAGGVAVIKSGAATEVELKERKQRIEDAVLNAKAAVEEGIVAGGGVALLQAADTVFETLELEGDEATGAQIVKIAVAAPLKQIAENAGLEGGVVAEKVRSLPAGEGLNAATGNYEDLLAAGIADPVKVTRSALQNAASIAGLFLTTEAVVANKPEPPSAGHDDAAAGMGGMY
>NZ_CP029001.1|WP_126720543.1|1227857_1228400_+|hypothetical-protein
MRKRFKLSLVSLAIFSATLGLSGCSQDINRTSGDSQSTILLRLSQGTREVNVFEDPTFSVLLNKPEALDEENAPAPKVWNMIHYDRERAMSIRVDNCAELDLLEIIVYDQIDSRGRPKGYQYFTICGAGSVEKCRAISLLPMEAQRLIDSPDFNHFALAGICISDDRLDAASFITFLKKA
>NZ_CP029001.1|WP_108726537.1|1228806_1229820_-|hypothetical-protein
MSRTDVPQWVTQSFVRSVSAVGATASREEIERICCHLIELWSSPGRSFHNTTHLFDLLGHIDTLAAEAHNVDVVRLAAWGHGLVFSTDGQAIYTRNGGEDRGASAALIRKYLLELGVPEDTVEEIRQLIVHMRKHPLPTPESGMYEPADMNLLVLTDAHLGALANQPQKYKTYMEKVREEYEHVPHTQYLQARLEVVTRLLGRRRIYTTPLAAQWEEAARQNLQLEQQRLLAELEKDAPASAVVEENAGDPVAVPESTVSDAEAAAPSQTVHLGSSLETASDDFEPGSPSRPLTPEEAKQARRDDIARATLEKIERAKEAKDRERARLDEFPTGLVE
>NZ_CP029001.1|WP_108726538.1|1229922_1230711_+|SDR-family-NAD(P)-dependent-oxidoreductase
MTPATSPLRGRALITGGSSGLGMTFARQLADRGMDLVLVARDRGRLDRAAAELRDRGASVEVISADLGDDADVQAISERLGSAESPIDVFVNNAGSGLYAKMATSDASELLAGAQLMGIAPMVLGGAAAAAMKERGAGVIINTSSMSGAVPMGAYSAIKAFVRVWSDSLAIEVAPFGVQVVTFIPGWVRTEFHARTGVSTSSIPNFLWLDADRVVAECLADVDKGKTSSTPSKRFKLIGFLAKHAPAAGVKAAVKKLNKGRR
>NZ_CP029001.1|WP_024963609.1|1230707_1231430_+|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MSELQPLDDYHSESKKKARKNVRKFITRPALKTLLSTRVEGQDNVAGLEGAYIVVGNHTSHLDAPMVFTLLPEHMTEKLATGAAADYWYRRPAISKVTSLFFNTYPIERKRSSGPGAGKAKGMTSRLLREGIPILIFPEGTRSRTGEPGEFKVGAAALAIKFAIPIVPLALRGGHEAMPVGAVFPTPNRPPVDMFIGKPMYAEEGDDAEAFMARVRAHIMAMLEEGSANPAGEVGTAEEE

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP029001_1	1.37\|438591\|33\|NZ_CP029001\|CRISPRCasFinder,CRT,PILER-CR	438591-438623	33	NC_048095	Arthrobacter phage Judy, complete genome	38307-38339	3	0.909
NZ_CP029001_1	1.7\|436761\|33\|NZ_CP029001\|CRISPRCasFinder,CRT,PILER-CR	436761-436793	33	FR687252	Pantoea phage LIMElight complete genome	26680-26712	7	0.788
NZ_CP029001_1	1.7\|436761\|33\|NZ_CP029001\|CRISPRCasFinder,CRT,PILER-CR	436761-436793	33	NC_019454	Pantoea phage LIMElight, complete genome	26680-26712	7	0.788
NZ_CP029001_1	1.19\|437493\|33\|NZ_CP029001\|CRISPRCasFinder,CRT,PILER-CR	437493-437525	33	MT276994	Aeromonas phage AhyVDH1, complete genome	21170-21202	7	0.788
NZ_CP029001_1	1.26\|437920\|33\|NZ_CP029001\|CRISPRCasFinder,CRT,PILER-CR	437920-437952	33	NZ_CP016287	Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence	1021995-1022027	7	0.788
NZ_CP029001_1	1.26\|437920\|33\|NZ_CP029001\|CRISPRCasFinder,CRT,PILER-CR	437920-437952	33	NZ_CP042276	Agrobacterium tumefaciens strain 186 plasmid pAt, complete sequence	284282-284314	7	0.788
NZ_CP029001_1	1.26\|437920\|33\|NZ_CP029001\|CRISPRCasFinder,CRT,PILER-CR	437920-437952	33	NC_009620	Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequence	138954-138986	7	0.788
NZ_CP029001_1	1.28\|438042\|33\|NZ_CP029001\|CRISPRCasFinder,CRT,PILER-CR	438042-438074	33	NZ_CP025075	[Bacillus] caldolyticus strain NEB414 plasmid pBcl1, complete sequence	15045-15077	7	0.788
NZ_CP029001_1	1.28\|438042\|33\|NZ_CP029001\|CRISPRCasFinder,CRT,PILER-CR	438042-438074	33	NC_014916	Geobacillus sp. Y412MC52 plasmid pGYMC5201, complete sequence	3412-3444	7	0.788
NZ_CP029001_1	1.28\|438042\|33\|NZ_CP029001\|CRISPRCasFinder,CRT,PILER-CR	438042-438074	33	NC_013412	Geobacillus sp. Y412MC61, complete sequence	28231-28263	7	0.788
NZ_CP029001_1	1.37\|438591\|33\|NZ_CP029001\|CRISPRCasFinder,CRT,PILER-CR	438591-438623	33	NZ_LN831789	Streptomyces leeuwenhoekii strain type strain (C34 = DSM 42122 = NRRL B-24963) plasmid pSLE2	68652-68684	7	0.788
NZ_CP029001_1	1.7\|436761\|33\|NZ_CP029001\|CRISPRCasFinder,CRT,PILER-CR	436761-436793	33	NZ_CP010858	Marinovum algicola DG 898 plasmid pMaD3	5363-5395	8	0.758
NZ_CP029001_1	1.11\|437005\|33\|NZ_CP029001\|CRISPRCasFinder,CRT,PILER-CR	437005-437037	33	NZ_CP025613	Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed1, complete sequence	834645-834677	8	0.758
NZ_CP029001_1	1.25\|437859\|33\|NZ_CP029001\|CRISPRCasFinder,CRT,PILER-CR	437859-437891	33	NZ_LR594691	Variovorax sp. WDL1 plasmid 3	224892-224924	8	0.758
NZ_CP029001_1	1.53\|439567\|34\|NZ_CP029001\|CRISPRCasFinder,CRT,PILER-CR	439567-439600	34	MH617500	Microviridae sp. isolate ctgf627, complete genome	2618-2651	8	0.765
NZ_CP029001_1	1.14\|437188\|33\|NZ_CP029001\|CRISPRCasFinder,CRT,PILER-CR	437188-437220	33	NZ_CP015739	Shinella sp. HZN7 plasmid pShin-03, complete sequence	74094-74126	9	0.727
NZ_CP029001_1	1.19\|437493\|33\|NZ_CP029001\|CRISPRCasFinder,CRT,PILER-CR	437493-437525	33	NZ_CP030354	Novosphingobium sp. P6W plasmid pP6W1, complete sequence	239616-239648	9	0.727
NZ_CP029001_1	1.37\|438591\|33\|NZ_CP029001\|CRISPRCasFinder,CRT,PILER-CR	438591-438623	33	NC_010510	Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, complete sequence	275013-275045	9	0.727
NZ_CP029001_1	1.14\|437188\|33\|NZ_CP029001\|CRISPRCasFinder,CRT,PILER-CR	437188-437220	33	MN585994	Mycobacterium phage SheaKeira, complete genome	1260-1292	10	0.697
NZ_CP029001_1	1.14\|437188\|33\|NZ_CP029001\|CRISPRCasFinder,CRT,PILER-CR	437188-437220	33	NC_048859	Bifidobacterium phage BadAargau2, complete genome	5732-5764	10	0.697
NZ_CP029001_1	1.17\|437371\|33\|NZ_CP029001\|CRISPRCasFinder,CRT,PILER-CR	437371-437403	33	NZ_CP016617	Microvirga ossetica strain V5/3m plasmid unnamed1, complete sequence	6270-6302	10	0.697
NZ_CP029001_1	1.17\|437371\|33\|NZ_CP029001\|CRISPRCasFinder,CRT,PILER-CR	437371-437403	33	NZ_CP029177	Acidibrevibacterium fodinaquatile strain G45-3 plasmid unnamed1, complete sequence	43647-43679	10	0.697
NZ_CP029001_1	1.26\|437920\|33\|NZ_CP029001\|CRISPRCasFinder,CRT,PILER-CR	437920-437952	33	NZ_CP007130	Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence	1019120-1019152	10	0.697
NZ_CP029001_1	1.38\|438652\|33\|NZ_CP029001\|CRISPRCasFinder,CRT,PILER-CR	438652-438684	33	NC_007410	Trichormus variabilis ATCC 29413 plasmid A, complete sequence	81504-81536	10	0.697
NZ_CP029001_1	1.38\|438652\|33\|NZ_CP029001\|CRISPRCasFinder,CRT,PILER-CR	438652-438684	33	NC_007412	Trichormus variabilis ATCC 29413 plasmid C, complete sequence	230194-230226	10	0.697
NZ_CP029001_1	1.38\|438652\|33\|NZ_CP029001\|CRISPRCasFinder,CRT,PILER-CR	438652-438684	33	NZ_CP047243	Trichormus variabilis 0441 plasmid unnamed1, complete sequence	91551-91583	10	0.697
NZ_CP029001_1	1.44\|439018\|33\|NZ_CP029001\|CRISPRCasFinder,CRT,PILER-CR	439018-439050	33	NZ_CP011481	Hoeflea sp. IMCC20628 plasmid, complete sequence	4050-4082	10	0.697

1. spacer 1.37|438591|33|NZ_CP029001|CRISPRCasFinder,CRT,PILER-CR matches to NC_048095 (Arthrobacter phage Judy, complete genome) position: , mismatch: 3, identity: 0.909

agagggcgtaggccgcgaacttggtgtacgggg	CRISPR spacer
ggagggcgtaggcgccgaacttggtgtacgggg	Protospacer
.************  ******************

2. spacer 1.7|436761|33|NZ_CP029001|CRISPRCasFinder,CRT,PILER-CR matches to FR687252 (Pantoea phage LIMElight complete genome) position: , mismatch: 7, identity: 0.788

acgccggtcgcggtaatcgtctgctcgatcccg	CRISPR spacer
tcggcggtcggggtaatcgtctgctctaccgtg	Protospacer
 ** ****** *************** *.* .*

3. spacer 1.7|436761|33|NZ_CP029001|CRISPRCasFinder,CRT,PILER-CR matches to NC_019454 (Pantoea phage LIMElight, complete genome) position: , mismatch: 7, identity: 0.788

acgccggtcgcggtaatcgtctgctcgatcccg	CRISPR spacer
tcggcggtcggggtaatcgtctgctctaccgtg	Protospacer
 ** ****** *************** *.* .*

4. spacer 1.19|437493|33|NZ_CP029001|CRISPRCasFinder,CRT,PILER-CR matches to MT276994 (Aeromonas phage AhyVDH1, complete genome) position: , mismatch: 7, identity: 0.788

cgggtcggcgtgagcctgcccggccactaccgg	CRISPR spacer
cagataagcctgagcctgcccggcctctaccgc	Protospacer
*.*.* .** *************** ******

5. spacer 1.26|437920|33|NZ_CP029001|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016287 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.788

cggtgagaacggtaacgagcgcgccgagcgcgg	CRISPR spacer
tgctgagaacgatatcgagcgcgccgagcgtat	Protospacer
.* ********.** ***************..

6. spacer 1.26|437920|33|NZ_CP029001|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP042276 (Agrobacterium tumefaciens strain 186 plasmid pAt, complete sequence) position: , mismatch: 7, identity: 0.788

-cggtgagaacggtaacgagcgcgccgagcgcgg	CRISPR spacer
ccagtg-ctgcggtgacgagcgccccgagcgcgg	Protospacer
 *.***   .****.******** **********

7. spacer 1.26|437920|33|NZ_CP029001|CRISPRCasFinder,CRT,PILER-CR matches to NC_009620 (Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequence) position: , mismatch: 7, identity: 0.788

cggtgagaacggtaacgagcgcgccgagcgcgg	CRISPR spacer
cgatcaccgcggcaacgaccgcgccgagcgcgg	Protospacer
**.* *  .***.***** **************

8. spacer 1.28|438042|33|NZ_CP029001|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025075 ([Bacillus] caldolyticus strain NEB414 plasmid pBcl1, complete sequence) position: , mismatch: 7, identity: 0.788

cctgcgaa--ggcaggggttttcaccctagacgag	CRISPR spacer
--ggccaagtggaaagggttttcaccctagacgaa	Protospacer
   ** **  ** *.*******************.

9. spacer 1.28|438042|33|NZ_CP029001|CRISPRCasFinder,CRT,PILER-CR matches to NC_014916 (Geobacillus sp. Y412MC52 plasmid pGYMC5201, complete sequence) position: , mismatch: 7, identity: 0.788

cctgcgaa--ggcaggggttttcaccctagacgag	CRISPR spacer
--ggccaagtggaaagggttttcaccctagacgaa	Protospacer
   ** **  ** *.*******************.

10. spacer 1.28|438042|33|NZ_CP029001|CRISPRCasFinder,CRT,PILER-CR matches to NC_013412 (Geobacillus sp. Y412MC61, complete sequence) position: , mismatch: 7, identity: 0.788

cctgcgaa--ggcaggggttttcaccctagacgag	CRISPR spacer
--ggccaagtggaaagggttttcaccctagacgaa	Protospacer
   ** **  ** *.*******************.

11. spacer 1.37|438591|33|NZ_CP029001|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LN831789 (Streptomyces leeuwenhoekii strain type strain (C34 = DSM 42122 = NRRL B-24963) plasmid pSLE2) position: , mismatch: 7, identity: 0.788

agagggcgtaggccgcgaacttggtgtacgggg	CRISPR spacer
agagggcggaggccgcgagcttggcggtccggc	Protospacer
******** *********.*****.*  * **

12. spacer 1.7|436761|33|NZ_CP029001|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010858 (Marinovum algicola DG 898 plasmid pMaD3) position: , mismatch: 8, identity: 0.758

acgccggtcgcggtaatcgtctgctcgatcccg	CRISPR spacer
gcgacccaagcggtcatcgtctgcgcgatcccg	Protospacer
.** *    ***** ********* ********

13. spacer 1.11|437005|33|NZ_CP029001|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025613 (Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.758

gtcatccaccaccgtcacgatacccggcatggc	CRISPR spacer
gatgatgaccgccgtcatgatacccggcatggc	Protospacer
* .. . ***.******.***************

14. spacer 1.25|437859|33|NZ_CP029001|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR594691 (Variovorax sp. WDL1 plasmid 3) position: , mismatch: 8, identity: 0.758

gtttccggcgtgtggtcggtgggctgggcgctg	CRISPR spacer
ctacgccgcgtgtgatcggtcggctgggcgccg	Protospacer
 * . * *******.***** **********.*

15. spacer 1.53|439567|34|NZ_CP029001|CRISPRCasFinder,CRT,PILER-CR matches to MH617500 (Microviridae sp. isolate ctgf627, complete genome) position: , mismatch: 8, identity: 0.765

tgtggcgccagtggaggttggtggtgccacatgt-	CRISPR spacer
ggtggcgccactggaggttggtgatg-gataagcg	Protospacer
 ********* ************.**  *.* *.

16. spacer 1.14|437188|33|NZ_CP029001|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015739 (Shinella sp. HZN7 plasmid pShin-03, complete sequence) position: , mismatch: 9, identity: 0.727

ccggtatcggccttgatctgtgccgtcacacgc	CRISPR spacer
tcggtatcggccctggtctgtgccgtgcttttc	Protospacer
.***********.**.**********  . . *

17. spacer 1.19|437493|33|NZ_CP029001|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030354 (Novosphingobium sp. P6W plasmid pP6W1, complete sequence) position: , mismatch: 9, identity: 0.727

cgggtcggcgtgagcctgcccggccactaccgg	CRISPR spacer
atcgtcggcgtgcgcctgaccggccaccgcaag	Protospacer
   ********* ***** ********..* .*

18. spacer 1.37|438591|33|NZ_CP029001|CRISPRCasFinder,CRT,PILER-CR matches to NC_010510 (Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, complete sequence) position: , mismatch: 9, identity: 0.727

agagggcgtaggccgcgaacttggtgtacgggg	CRISPR spacer
cgagggcgaaggccgcgaccttggtgcggtaga	Protospacer
 ******* ********* *******..  .*.

19. spacer 1.14|437188|33|NZ_CP029001|CRISPRCasFinder,CRT,PILER-CR matches to MN585994 (Mycobacterium phage SheaKeira, complete genome) position: , mismatch: 10, identity: 0.697

ccggtatcggccttgatctgtgccgtcacacgc	CRISPR spacer
tcggtatcggtcttgatctgtgtcggcgtcgag	Protospacer
.*********.***********.** *..  .

20. spacer 1.14|437188|33|NZ_CP029001|CRISPRCasFinder,CRT,PILER-CR matches to NC_048859 (Bifidobacterium phage BadAargau2, complete genome) position: , mismatch: 10, identity: 0.697

ccggtatcggccttgatctgtgccgtcacacgc	CRISPR spacer
gcggtgtcggccttggtctgtgccgacttggct	Protospacer
 ****.*********.********* * ..  .

21. spacer 1.17|437371|33|NZ_CP029001|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016617 (Microvirga ossetica strain V5/3m plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.697

ctgtcctattcgggtggcgggatcaaggtcgcg	CRISPR spacer
agccgcaattcggatggcgggttcaaggtcgtt	Protospacer
   . * ******.******* *********.

22. spacer 1.17|437371|33|NZ_CP029001|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029177 (Acidibrevibacterium fodinaquatile strain G45-3 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.697

ctgtcctattcgggtggcgggatcaaggtcgcg	CRISPR spacer
gatatcaatgcgggtggcgggatcaagggcggt	Protospacer
    .* ** ****************** **

23. spacer 1.26|437920|33|NZ_CP029001|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007130 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence) position: , mismatch: 10, identity: 0.697

cggtgagaacggtaacgagcgcgccgagcgcgg	CRISPR spacer
tgccccacacggcgacgagcgcgccgagcgcgc	Protospacer
.* .  . ****..******************

24. spacer 1.38|438652|33|NZ_CP029001|CRISPRCasFinder,CRT,PILER-CR matches to NC_007410 (Trichormus variabilis ATCC 29413 plasmid A, complete sequence) position: , mismatch: 10, identity: 0.697

gtacgaagcctactggcaaggagaagaaccgtg	CRISPR spacer
tgaaacagcctcctggcaaggagaaaaacctca	Protospacer
  * . ***** *************.**** ..

25. spacer 1.38|438652|33|NZ_CP029001|CRISPRCasFinder,CRT,PILER-CR matches to NC_007412 (Trichormus variabilis ATCC 29413 plasmid C, complete sequence) position: , mismatch: 10, identity: 0.697

gtacgaagcctactggcaaggagaagaaccgtg	CRISPR spacer
tgaaacagcctcctggcaaggagaaaaacctca	Protospacer
  * . ***** *************.**** ..

26. spacer 1.38|438652|33|NZ_CP029001|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047243 (Trichormus variabilis 0441 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.697

gtacgaagcctactggcaaggagaagaaccgtg	CRISPR spacer
tgaaacagcctcctggcaaggagaaaaacctca	Protospacer
  * . ***** *************.**** ..

27. spacer 1.44|439018|33|NZ_CP029001|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011481 (Hoeflea sp. IMCC20628 plasmid, complete sequence) position: , mismatch: 10, identity: 0.697

aagccgaccgcgtacagcaccaccttcgagacc	CRISPR spacer
aagccgaccgcgaacagcaccgccaccagcgtt	Protospacer
************ ********.** .*.. ...

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

568216 : 665935

Erysipelothrix_phage(41.67%)

terminase,transposase,portal,capsid,tail,holin,head,protease,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024962987.1\|568216_570823_-\|protease	ATP-dependent Clp protease ATP-binding subunit	A0A1S6UBG5	Serratia_phage	1.1e-133	41.1
WP_039663070.1\|570939_571383_-\|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	NA	NA	NA	NA
WP_108726193.1\|571382_571712_-	DUF2516 family protein	NA	NA	NA	NA
WP_108726194.1\|571720_572800_-	folate-binding protein YgfZ	NA	NA	NA	NA
WP_024962983.1\|572815_573427_-	FABP family protein	NA	NA	NA	NA
WP_024962982.1\|573436_574267_-	hypothetical protein	NA	NA	NA	NA
WP_108726195.1\|574710_576993_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA
WP_080689206.1\|577124_578051_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_025296879.1\|578850_580380_-	alanine:cation symporter family protein	NA	NA	NA	NA
WP_024964259.1\|580537_581203_+	DUF47 family protein	NA	NA	NA	NA
WP_025296878.1\|581206_582211_+	inorganic phosphate transporter	NA	NA	NA	NA
WP_025296877.1\|582304_583081_-	phosphate ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.3e-16	32.0
WP_108726196.1\|583110_583992_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA
WP_108726921.1\|584002_584986_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA
WP_108726197.1\|585099_586218_-	phosphate ABC transporter substrate-binding protein PstS	NA	NA	NA	NA
WP_108252722.1\|586304_587246_-	NUDIX hydrolase	NA	NA	NA	NA
WP_108252720.1\|587273_589532_-	RNA degradosome polyphosphate kinase	NA	NA	NA	NA
WP_053793287.1\|589796_590411_-	hypothetical protein	NA	NA	NA	NA
WP_108726922.1\|591302_592694_+	DNA cytosine methyltransferase	F2Y148	Organic_Lake_phycodnavirus	1.0e-45	31.2
WP_126720526.1\|592764_593439_+	SinI family restriction endonuclease	NA	NA	NA	NA
WP_108726199.1\|593501_595343_-	AAA family ATPase	NA	NA	NA	NA
WP_126720527.1\|595332_595785_-	hypothetical protein	NA	NA	NA	NA
WP_108726201.1\|595777_596821_-	hypothetical protein	NA	NA	NA	NA
WP_108726202.1\|597267_597771_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_108726203.1\|597841_598105_+	hypothetical protein	NA	NA	NA	NA
WP_108726204.1\|598107_598524_+	hypothetical protein	NA	NA	NA	NA
WP_108726205.1\|598520_599684_+	DUF2800 domain-containing protein	A0A1W6JQ97	Corynebacterium_phage	1.8e-112	55.6
WP_108726206.1\|599686_600241_+	DUF2815 family protein	A0A2K5B2A9	Erysipelothrix_phage	1.2e-42	55.5
WP_108726207.1\|600334_602275_+	DNA polymerase	A0A2K5B2B0	Erysipelothrix_phage	1.4e-197	52.5
WP_108726208.1\|602504_602930_+	DUF4406 domain-containing protein	A0A2K5B270	Erysipelothrix_phage	4.1e-30	45.6
WP_108726209.1\|602926_605182_+	DNA primase	M1NSF0	Streptococcus_phage	6.1e-189	47.0
WP_108726210.1\|605311_605587_+	VRR-NUC domain-containing protein	W8CQF0	Croceibacter_phage	6.0e-14	41.6
WP_108726211.1\|605570_606056_+	HNH endonuclease	A0A2I7QIM4	Bacillus_phage	2.2e-19	52.5
WP_108726212.1\|606045_607407_+	DEAD/DEAH box helicase	A0A1L6BZE2	Pasteurella_phage	6.4e-157	60.2
WP_108726213.1\|607403_607874_+	hypothetical protein	NA	NA	NA	NA
WP_108726214.1\|608041_608416_+	HNH endonuclease	A0A2K5B276	Erysipelothrix_phage	4.9e-35	54.6
WP_108726215.1\|608665_609250_+\|terminase	terminase	A0A2K5B277	Erysipelothrix_phage	1.7e-45	48.7
WP_108726216.1\|609357_610536_+	methionine adenosyltransferase	A0A2K5B278	Erysipelothrix_phage	3.3e-93	49.9
WP_108726217.1\|610507_611749_+	DNA modification methylase	A0A2I4R670	Erysipelothrix_phage	1.3e-140	59.6
WP_108726218.1\|611745_613047_+	DNA cytosine methyltransferase	A0A1P8DJM9	Virus_Rctr41k	2.0e-38	32.5
WP_108726219.1\|613137_613851_+	hypothetical protein	NA	NA	NA	NA
WP_108726220.1\|613851_614067_+	DUF4314 domain-containing protein	NA	NA	NA	NA
WP_108726221.1\|614129_614378_+	hypothetical protein	NA	NA	NA	NA
WP_108726222.1\|614402_614714_+	hypothetical protein	NA	NA	NA	NA
WP_108726223.1\|614823_616428_+\|terminase	terminase large subunit	A0A2K5B285	Erysipelothrix_phage	4.3e-237	75.2
WP_108726224.1\|616399_617008_+	GNAT family N-acetyltransferase	D0R097	Streptococcus_phage	1.7e-29	39.5
WP_108726225.1\|617087_618350_+\|portal	phage portal protein	A0A2K5B287	Erysipelothrix_phage	1.2e-170	73.6
WP_108726226.1\|618346_619108_+\|protease	Clp protease ClpP	Q6DMU1	Streptococcus_phage	8.1e-61	58.7
WP_108726227.1\|619127_620342_+\|capsid	phage major capsid protein	A0A2I4R671	Erysipelothrix_phage	2.3e-118	54.9
WP_108726228.1\|620373_620688_+\|head,tail	phage gp6-like head-tail connector protein	A0A2K5B290	Erysipelothrix_phage	2.6e-29	59.4
WP_108726923.1\|620718_621045_+\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_108726924.1\|621037_621472_+	hypothetical protein	NA	NA	NA	NA
WP_108726229.1\|621468_621819_+	hypothetical protein	A0A2K5B293	Erysipelothrix_phage	1.6e-16	38.1
WP_108726230.1\|621804_622317_-	hypothetical protein	NA	NA	NA	NA
WP_108726231.1\|622500_622860_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_108726232.1\|622856_623507_+	cation transporter	NA	NA	NA	NA
WP_159081060.1\|623677_624100_-	hypothetical protein	NA	NA	NA	NA
WP_108726234.1\|624276_624888_+\|tail	phage tail protein	A0A2K5B294	Erysipelothrix_phage	7.7e-78	73.7
WP_108726235.1\|624887_625274_+	hypothetical protein	A0A2K5B295	Erysipelothrix_phage	6.0e-28	52.8
WP_126720528.1\|625461_625698_-	hypothetical protein	NA	NA	NA	NA
WP_108726236.1\|625756_626521_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	7.3e-86	65.7
WP_159081061.1\|626706_626877_-	hypothetical protein	NA	NA	NA	NA
WP_010991840.1\|627240_628464_-	tetracycline efflux MFS transporter Tet(33)	NA	NA	NA	NA
WP_005882738.1\|628502_629072_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_011867692.1\|629392_629647_-	hypothetical protein	NA	NA	NA	NA
WP_108726236.1\|629710_630475_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	7.3e-86	65.7
WP_108726237.1\|630507_630933_-	hypothetical protein	NA	NA	NA	NA
WP_108726238.1\|630986_633635_+	tape measure protein	A0A2K9V3J7	Faecalibacterium_phage	2.1e-39	39.7
WP_108726239.1\|633634_634330_+	hypothetical protein	NA	NA	NA	NA
WP_108726240.1\|634353_637230_+	peptidase	A0A2H4JFY7	uncultured_Caudovirales_phage	1.9e-62	37.2
WP_108726241.1\|637250_637676_+	DUF1617 family protein	K4I4C5	Lactobacillus_phage	2.6e-08	29.0
WP_126720530.1\|637665_637869_+	hypothetical protein	NA	NA	NA	NA
WP_108726242.1\|637937_638375_+\|holin	phage holin family protein	A0A2K5B2A2	Erysipelothrix_phage	1.2e-37	60.3
WP_108726243.1\|638367_639144_+	N-acetylmuramoyl-L-alanine amidase	A0A221J6T7	Arthrobacter_phage	7.1e-28	52.6
WP_159081062.1\|639283_639697_+	hypothetical protein	NA	NA	NA	NA
WP_159081063.1\|639693_639861_+	hypothetical protein	NA	NA	NA	NA
WP_108726245.1\|639928_641170_+	recombinase family protein	Q6DMS5	Streptococcus_phage	9.5e-59	38.4
WP_108726246.1\|641169_642717_+	recombinase family protein	Q6DMS5	Streptococcus_phage	3.6e-124	46.3
WP_159081064.1\|642752_643460_-	hypothetical protein	NA	NA	NA	NA
WP_108726248.1\|643465_643912_-	hypothetical protein	NA	NA	NA	NA
WP_011116968.1\|643949_643997_+	erythromycin resistance leader peptide	NA	NA	NA	NA
WP_071573762.1\|644096_644951_+	23S ribosomal RNA methyltransferase Erm	E4ZFQ0	Streptococcus_phage	7.1e-13	27.6
WP_053793288.1\|645994_646945_-	EamA family transporter	NA	NA	NA	NA
WP_052251287.1\|646937_647732_-	hypothetical protein	NA	NA	NA	NA
WP_053793289.1\|647733_648138_-	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA
WP_052251288.1\|648134_649661_-	mechanosensitive ion channel	NA	NA	NA	NA
WP_159081065.1\|650385_652179_+	virulence factor MviN	NA	NA	NA	NA
WP_039663096.1\|652236_653187_+	L-lactate dehydrogenase	NA	NA	NA	NA
WP_108726251.1\|653277_654183_-	class C sortase	NA	NA	NA	NA
WP_108726252.1\|654259_655651_-	SpaH/EbpB family LPXTG-anchored major pilin	NA	NA	NA	NA
WP_159081066.1\|655713_658308_-	VWA domain-containing protein	NA	NA	NA	NA
WP_159081067.1\|658532_661991_-	Cna B-type domain-containing protein	NA	NA	NA	NA
WP_025296863.1\|662320_663229_+	hypothetical protein	NA	NA	NA	NA
WP_025296862.1\|663256_665302_-	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	6.0e-18	27.7
WP_159081068.1\|665488_665935_+\|holin	phage holin family protein	NA	NA	NA	NA

DBSCAN-SWA_2

1615487 : 1629393

Synechococcus_phage(22.22%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024963390.1\|1615487_1615784_+	co-chaperone GroES	A0A221S308	uncultured_virus	1.8e-19	47.9
WP_108726717.1\|1616010_1616466_+	hypothetical protein	NA	NA	NA	NA
WP_108726718.1\|1616604_1617096_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	1.0e-19	39.4
WP_039662051.1\|1617163_1617871_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3FGF0	Synechococcus_phage	2.1e-39	38.9
WP_108726719.1\|1617903_1619406_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	2.6e-58	35.1
WP_108726720.1\|1619402_1620449_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3FGG1	Synechococcus_phage	2.9e-61	42.7
WP_108726721.1\|1620445_1621024_+	phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA
WP_108726722.1\|1621020_1622283_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA
WP_108726723.1\|1622291_1626041_+	phosphoribosylformylglycinamidine synthase	A6N228	Microbacterium_phage	2.3e-31	25.1
WP_108726724.1\|1626134_1626380_+	hypothetical protein	NA	NA	NA	NA
WP_024963400.1\|1626520_1626817_-	WhiB family transcriptional regulator	A0A2P1CGA4	Mycobacterium_phage	7.9e-12	45.8
WP_108726725.1\|1627018_1628521_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	9.0e-96	41.0
WP_024963402.1\|1628670_1629393_-	DNA polymerase III subunit epsilon	Q1WDI5	Streptomyces_phage	1.2e-48	45.7

DBSCAN-SWA_3

1643028 : 1713774

Streptococcus_phage(33.33%)

transposase,integrase,protease

attL 1703310:1703369|attR 1710803:1712099

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_108726732.1\|1643028_1644102_+\|integrase	site-specific integrase	Q8SBN2	Clostridium_phage	1.6e-83	45.2
WP_108726733.1\|1644555_1645689_+	hypothetical protein	NA	NA	NA	NA
WP_108726734.1\|1645875_1648536_-	type I restriction endonuclease subunit R	NA	NA	NA	NA
WP_039688990.1\|1648541_1648820_-	hypothetical protein	NA	NA	NA	NA
WP_039688992.1\|1648868_1649774_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_108726736.1\|1650240_1650426_+	conjugal transfer protein	D0R0F6	Streptococcus_phage	6.2e-07	43.1
WP_052802844.1\|1650442_1651426_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA
WP_159081098.1\|1651536_1652247_-	hypothetical protein	NA	NA	NA	NA
WP_108726161.1\|1652384_1653842_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_108726160.1\|1653841_1654594_+	ATP-binding protein	A0A059NT77	Lactococcus_phage	1.0e-31	38.1
WP_108726738.1\|1655065_1655635_+	hypothetical protein	NA	NA	NA	NA
WP_108726739.1\|1655907_1658070_+	AAA domain-containing protein	K4I1H4	Acidithiobacillus_phage	8.3e-26	30.0
WP_108726740.1\|1658156_1660076_-	tetracycline resistance ribosomal protection protein Tet(W)	E4ZFJ7	Streptococcus_phage	0.0e+00	97.3
WP_082019746.1\|1660750_1661143_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_108726741.1\|1661266_1661974_-	class B sortase	NA	NA	NA	NA
WP_108726960.1\|1662023_1665122_-	VaFE repeat-containing surface-anchored protein	NA	NA	NA	NA
WP_108726742.1\|1665132_1665609_-	DNA gyrase	NA	NA	NA	NA
WP_103265534.1\|1665725_1666733_-	conjugal transfer protein TrbL	NA	NA	NA	NA
WP_039689021.1\|1666729_1667428_-	hypothetical protein	NA	NA	NA	NA
WP_108726743.1\|1667445_1669032_-	hydrolase Nlp/P60	A0A1S5SEZ8	Streptococcus_phage	1.9e-11	36.4
WP_039689025.1\|1669028_1671509_-	DUF87 domain-containing protein	NA	NA	NA	NA
WP_039689027.1\|1671486_1671897_-	PrgI family protein	NA	NA	NA	NA
WP_039689029.1\|1671906_1672122_-	hypothetical protein	NA	NA	NA	NA
WP_039689031.1\|1672296_1674138_-	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_039689033.1\|1674134_1674683_-	hypothetical protein	NA	NA	NA	NA
WP_108726744.1\|1674713_1675238_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_108726745.1\|1675407_1676241_-	ATP-binding protein	A0A2K9V3L7	Faecalibacterium_phage	8.8e-08	33.6
WP_039689037.1\|1676256_1676742_-	hypothetical protein	NA	NA	NA	NA
WP_039689040.1\|1677087_1677333_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_108726746.1\|1677963_1680303_+	hypothetical protein	NA	NA	NA	NA
WP_108726747.1\|1680868_1681489_-	lipoate--protein ligase family protein	NA	NA	NA	NA
WP_108726748.1\|1681488_1681692_-	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit	NA	NA	NA	NA
WP_108726749.1\|1681700_1682036_-	thioredoxin family protein	NA	NA	NA	NA
WP_108726750.1\|1682084_1683086_-	permease	NA	NA	NA	NA
WP_108726961.1\|1683216_1683480_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_126720491.1\|1684073_1684361_-	hypothetical protein	NA	NA	NA	NA
WP_108251352.1\|1685680_1685899_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_108726752.1\|1685895_1686282_+	type II toxin-antitoxin system death-on-curing family toxin	D0R0D2	Streptococcus_phage	7.4e-18	34.7
WP_108726754.1\|1687218_1689825_+	DNA helicase PcrA	A7KV33	Bacillus_phage	8.0e-124	40.1
WP_108726755.1\|1689821_1691798_+	acyltransferase	B5WZU0	Pseudomonas_phage	3.4e-34	32.6
WP_108726756.1\|1691924_1693100_+	ADP-forming succinate--CoA ligase subunit beta	NA	NA	NA	NA
WP_108251342.1\|1693102_1694020_+	succinate--CoA ligase subunit alpha	NA	NA	NA	NA
WP_159074042.1\|1694119_1694467_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_108726757.1\|1694530_1695802_+	hypothetical protein	NA	NA	NA	NA
WP_108726758.1\|1695843_1697367_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	4.0e-51	40.3
WP_108726759.1\|1697560_1697842_+	hypothetical protein	NA	NA	NA	NA
WP_108726962.1\|1697860_1700065_-	6-phosphofructokinase	NA	NA	NA	NA
WP_108726760.1\|1700228_1701881_+	glucose-6-phosphate isomerase	NA	NA	NA	NA
WP_108726761.1\|1702035_1702287_-	hypothetical protein	NA	NA	NA	NA
WP_108726762.1\|1702267_1702759_-	hypothetical protein	NA	NA	NA	NA
1703310:1703369	attL	NA	NA	NA	NA
WP_108726763.1\|1704745_1706368_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_159081099.1\|1706748_1707333_-	hypothetical protein	NA	NA	NA	NA
WP_108726765.1\|1707762_1708854_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_108726766.1\|1708904_1709141_-	hypothetical protein	NA	NA	NA	NA
WP_159081100.1\|1709165_1709483_-\|transposase	IS30 family transposase	H7BWC8	unidentified_phage	2.1e-10	38.0
WP_159081101.1\|1709486_1710164_-\|transposase	IS30 family transposase	NA	NA	NA	NA
WP_108726769.1\|1712538_1713774_+\|protease	trypsin-like serine protease	NA	NA	NA	NA
1710803:1712099	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP029001

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection