CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP025617	Micrococcus luteus strain SGAir0127 plasmid pSGAir0127	1 crisprs	csa3,c2c9_V-U4	0	10	0	0
NZ_CP025616	Micrococcus luteus strain SGAir0127 chromosome, complete genome	1 crisprs	csb2gr5,cas3,csb3,cas1,cas2,csa3,DEDDh,WYL,DinG	0	6	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP025617_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP025617_1

79976-80310

TypeV-U4

Consensus_repeat	Method
GGAAGCCCCGCGCACGCAGGGATGAGCCC	PILER-CR
GGAAGCCCCGCGCACGCAGGGATGAGCCC	CRT
CCCCGCGCACGCAGGGATGAGCCC	CRISPRCasFinder

5 spacers

c2c9_V-U4

The CRISPR arrays of NZ_CP025617_1

>merge|NZ_CP025617|1|79976-80310|PILER-CR,CRT,CRISPRCasFinder
GGAAGCCCCGCGCACGCAGGGATGAGCCCAGGGGAACAGGGGAACAAACACTCGCTCACCGGGGAAGCCCCGCGCACGCAGGGATGAGCCCTACGTCAGCCAGATCATGCAGCTCGCCCAAGCGGAAGCCCCACGCACGCAGGGATGAGCCCTTGCACCCCTCCCCCGTTAGAGGGTGGAACAGGGAAGCCCCGCGCACGCAGGGATGAGCCCACGAACGTGTTGCGCTCGCCCTCGTGGACCTGGGCGACCCCGTGCACGCAGGGATGAGCCCCAGATGGCGGCCTTGAATCGGATCGAATACCGGGAAGCTCCGCCCGCGCAGGGATGAGCCA

>NZ_CP025617|1|1|79976-80188|PILER-CR
GGAAGCCCCGCGCACGCAGGGATGAGCCC	AGGGGAACAGGGGAACAAACACTCGCTCACCGG
GGAAGCCCCGCGCACGCAGGGATGAGCCC	TACGTCAGCCAGATCATGCAGCTCGCCCAAGC
GGAAGCCCCACGCACGCAGGGATGAGCCC	TTGCACCCCTCCCCCGTTAGAGGGTGGAACAG
GGAAGCCCCGCGCACGCAGGGATGAGCCC

>NZ_CP025617|1|1|79976-80310|CRT
GGAAGCCCCGCGCACGCAGGGATGAGCCC	AGGGGAACAGGGGAACAAACACTCGCTCACCGG
GGAAGCCCCGCGCACGCAGGGATGAGCCC	TACGTCAGCCAGATCATGCAGCTCGCCCAAGC
GGAAGCCCCACGCACGCAGGGATGAGCCC	TTGCACCCCTCCCCCGTTAGAGGGTGGAACAG
GGAAGCCCCGCGCACGCAGGGATGAGCCC	ACGAACGTGTTGCGCTCGCCCTCGTGGACCTG
GGCGACCCCGTGCACGCAGGGATGAGCCC	CAGATGGCGGCCTTGAATCGGATCGAATACCG
GGAAGCTCCGCCCGCGCAGGGATGAGCCA

>NZ_CP025617|1|1|79981-80310|CRISPRCasFinder
CCCCGCGCACGCAGGGATGAGCCC	AGGGGAACAGGGGAACAAACACTCGCTCACCGGGGAAG
CCCCGCGCACGCAGGGATGAGCCC	TACGTCAGCCAGATCATGCAGCTCGCCCAAGCGGAAG
CCCCACGCACGCAGGGATGAGCCC	TTGCACCCCTCCCCCGTTAGAGGGTGGAACAGGGAAG
CCCCGCGCACGCAGGGATGAGCCC	ACGAACGTGTTGCGCTCGCCCTCGTGGACCTGGGCGA
CCCCGTGCACGCAGGGATGAGCCC	CAGATGGCGGCCTTGAATCGGATCGAATACCGGGAAG
CTCCGCCCGCGCAGGGATGAGCCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP025617.1\|WP_119218018.1\|77047_77497_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP025617.1\|WP_031943823.1\|76744_77044_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025617.1\|WP_087114238.1\|71366_74105_+\|class-I-SAM-dependent-DNA-methyltransferase	unknown	unknown	gnl\|CDD\|223934
NZ_CP025617.1\|WP_087114237.1\|68674_69271_+\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|239737
NZ_CP025617.1\|WP_119218024.1\|83465_84101_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025617.1\|WP_087113805.1\|84675_84966_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025617.1\|WP_119218025.1\|85078_85426_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025617.1\|WP_127445826.1\|69497_70328_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025617.1\|WP_119218019.1\|78265_79966_+\|transposase	c2c9_V-U4	-	gnl\|CDD\|223747
NZ_CP025617.1\|WP_119218021.1\|81387_81657_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025617.1\|WP_119218020.1\|81038_81308_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025617.1\|WP_087113807.1\|84253_84484_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025617.1\|WP_119218026.1\|86298_86748_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025617.1\|WP_119218029.1\|77499_78231_+\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|377857
NZ_CP025617.1\|WP_119218022.1\|81941_82145_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378999
NZ_CP025617.1\|WP_087114239.1\|74272_74938_+\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|377857
NZ_CP025617.1\|WP_101966151.1\|75847_76081_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025617.1\|WP_119218023.1\|82536_83202_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025617.1\|WP_069941825.1\|75386_75851_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP025617.1\|WP_119218018.1\|77047_77497_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	5.63629e-05
NZ_CP025617.1\|WP_087114238.1\|71366_74105_+\|class-I-SAM-dependent-DNA-methyltransferase	gnl\|CDD\|223934	COG1002, COG1002, Type II restriction enzyme, methylase subunits [Defense mechanisms].	6.76049e-12
NZ_CP025617.1\|WP_087114237.1\|68674_69271_+\|recombinase-family-protein	gnl\|CDD\|239737	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1.	2.72686e-46
NZ_CP025617.1\|WP_119218029.1\|77499_78231_+\|HNH-endonuclease	gnl\|CDD\|377857	pfam07510, DUF1524, Protein of unknown function (DUF1524). This family of uncharacterized proteins contain a conserved HXXP motif. A similar motif is seen in protein families in the His-Me finger endonuclease superfamily which suggests this family of proteins may also act as endonucleases.	1.20603e-28
NZ_CP025617.1\|WP_087114239.1\|74272_74938_+\|HNH-endonuclease	gnl\|CDD\|377857	pfam07510, DUF1524, Protein of unknown function (DUF1524). This family of uncharacterized proteins contain a conserved HXXP motif. A similar motif is seen in protein families in the His-Me finger endonuclease superfamily which suggests this family of proteins may also act as endonucleases.	7.10286e-08
NZ_CP025617.1\|WP_119218019.1\|78265_79966_+\|transposase	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.04423e-34
NZ_CP025617.1\|WP_119218022.1\|81941_82145_-\|hypothetical-protein	gnl\|CDD\|378999	pfam12957, DUF3846, Domain of unknown function (DUF3846). A family of uncharacterized proteins found by clustering human gut metagenomic sequences. This domain is found associated with an pfam07275 like domain. This suggests that this family may also be involved in evading host restriction.	1.94774e-05

>NZ_CP025617.1|WP_119218019.1|78265_79966_+|transposase
MPLNGWTMLAQEEVRAMTTTTGTDLVPRLRAFKHRLDPNPAQATLLAQYAGAARVAYNMLTAHNRAALAASAARRTELAETGLAGPELAARMKAERAADPTLRVASYQSYSTTHLTPLIRRHREAAAAIAAGADPAEAWTDERYAEPWMHTVPRRVLVSGLQNAAKATENWMASASGTRAGARVGLPRFKKKGRSRDSFTIPAPEVIGAAGTPYKRGEPRRGVITDHRHLRLASLGTIRTYDKTSRLVRACRRGAQIRSMTISQAGGRWYASILVADPTPIRTGPSRRQRANDAVGVDLGVKHLAALSTGEVIDNGRPGARQAARLTRLQRAYARTQPGSNRRERVRRQIAALHHGIALRRAGLLHQVSTRLAMDFAVVALEDLNVAGMTRSARGTLEAPGRNVAAKSGLNRAILDAGLGMLRRQLDYKTSWAGSQVKMIDRFAPSSKACSRCGTVKSTLSLAERTFECEACHLVIDRDVNAAINIRAWAVQEERGAGVGLARGRRESRNGRGAAVSGPPSGGAAGQGRGSVKPAPQGVGMSSRATGWSSQPPQPKGKAQSAEHPP
>NZ_CP025617.1|WP_119218029.1|77499_78231_+|HNH-endonuclease
MRRWVSSVVAVVAALGVVGAVGGGHVQGVQVPEVKLPKVALPSGVELPSLGDTSPTPAAGPVGGQLEQLALTSAAPASAYTRDAFGQRWADVDRNGCDTRNDVLRRDLTQVQIKPGTQGCKVLSGQLVDPYSGATIPFSSQDSQAVHIDHTVSLADAWASGAWAWDESQRTAFANDPANLLAVDGPANTSKSDATAADWLPDTVAGRCELVEHQVVVKAKWGLSVTERERAAMRRVLASCPSG
>NZ_CP025617.1|WP_119218018.1|77047_77497_+|helix-turn-helix-transcriptional-regulator
MNAIELKCRREALGLSRDALADTLGVAEKSITRWEFGKNPPRDWSWIDSAMTRLEDYRERLVEELIAETLRVHEQAGAALMLTYASRGSFYRWLPEMEEPDMGDGIEVIPVELHRAATAEAARRLRVSHGLHAVIEAVPTPQEGEGAGS
>NZ_CP025617.1|WP_031943823.1|76744_77044_+|hypothetical-protein
MTTFYYSVNEMARQAGFTSPSTWTRIKNDLRAPDAVMVSKIQGAGWTLDSWEDAANNELHTRREPLMKAITRLRLEEEALRQEYGVTDQDEPADQKAEG
>NZ_CP025617.1|WP_101966151.1|75847_76081_-|hypothetical-protein
MTTSLPSTDSEVARWVAHDRPEMVRAQTADGTAYRPDAAQVLAFMQAQAHLAQMLRFQYAAAHGLVPAHAGAVLTAP
>NZ_CP025617.1|WP_069941825.1|75386_75851_+|hypothetical-protein
MAARAKELQEKWARKGRYRAAVITLLASVITAGGALLAAAGATADEPAWVKESAVLAVLAATSLRVLASLRPTGWKRFPWSAWATILYGSLWLLVMGLAAEMWSAPGYILSTLTPLFLLVAVVVQDKATMRGQADAPETFREMMVDAIPQKWRD
>NZ_CP025617.1|WP_087114239.1|74272_74938_+|HNH-endonuclease
MSRRSLASLATAAVFVATAVLGGAGPAAAGTTYSAPLRTAVASLPVAAEKNAGYDRAAQFGDWKDANRDCQNTRAEVLIAESKTTPKFTTARKCTVATGKWVSSWDLRTHTSASTLQIDHLVPVHEAWGSGARYWTKAKRVAFYNDLGDDRSLNAQTSALNSAKQARGPEQWLPPKNQCKYIADWTAVKIRWGLKADATEKAFLVKKAASCTNTTLKVTRY
>NZ_CP025617.1|WP_087114238.1|71366_74105_+|class-I-SAM-dependent-DNA-methyltransferase
MQTKPLSWDQIRANAAAFVHEWAGESYERGESQSFWTELFAVYGIRRRKVAQYESRAKKADGGAGFIDVFWPGMLIAEQKSLGKDLAAAEDQALTYLANVPDAEQPRYVITCDFETFRLRDLDAPAGEEAVVEFPLEQLPVEAERFGFIAGYQKREFGSAEQAAASVKAAQLMADLYVELEGSGYDEHEASVFLVRTLFALFADDSGLWERDLFLEFIQTRTAEDGSDLGAQLTALFQVLNRPVNKRMAGTDELMLRFPYVNGSVFGESISIPYFNASMRQKLIEACLFNWGSISPAIFGSLFQAVKSKEARRELGEHYTTEENILKLIGPLFLDELRAEFVRSIHDRAALGRLHERLGQLRFLDPACGCGNFLIVAYRELRALELEILVRRQELSKKRSQTALVLDEDETVKVRMPHFHGIELEEWPATIARTAMFLVNHQANQDMSLKIGISPEQLPLSESAHIVVGNALELDWNSVLPASEDVRVMGNPPFIGARLMTAEQKAETNALWPRGKAGLLDYCAGWYAKAAAYLADTEQASFAFVTTNSITQGQQVAALFSDLLEDGWTVLFAHRTFTWTSEAANAAAVHCVIVGMVKERRSSRPLFSYRAGAGTPEMQPVSRINPYLVEGPDVFVQPRSKPLSTDLPGAVFGSMANDGGNLLLDTEGHATALADARASKYVRRFVGARELIHDLDRWCLWLVDVDADDVARSPFLRERIERNREYRAASKRAATRKLAATPHLFGERRAPSQAYLCIPRHVSENRAFFTAARFDPEVIAGDANFVVPDEDGLAFAVISSSAFIAWQRMVGGQIKSDLRFSNTLVWNTLPLPELSETDRSKLITAGEGVLEARALHPERSLAQHYNPLAMDPALVKAHAGLDRVMDGLLSLPAGATEKDRQTRLMELYAERA
>NZ_CP025617.1|WP_127445826.1|69497_70328_+|hypothetical-protein
MIFPVMDTWADVTYSRLVVPEGGGLYSDPSSEIVRSSDDRPKLHYHRSGMTSVQPSKKTGGQDRKVARLPSIDMVDRVQIFSAMMKLPVRLPAASDAGIGIYVMGDLMIAQSLGVSGVLYRRDSLNEVQLRQLTLGEPIIQSPSCDSTFIIDLSGYGSNTLLCISMIFSPTPLPDTASDFTLTSFFPAIIHEAGAVCIHAGDGSPVPGLTHSPPELKDILPTESGAYKESPLERVARIAAGADRLNRQSKADPAALPDPIDGILRPVPRGVYKGGA
>NZ_CP025617.1|WP_087114237.1|68674_69271_+|recombinase-family-protein
MVGQTVAYVRVSSAEQNLDRQLEAVGECDRVFQDKISGSSRAKRTGLAELMKYVREGDLVKVASMDRLGRDTRDLYAIVDELTGKGCAVQFVSERITVDKSGNSPVDGLMLGILAAFAEFERRRIKERQAEGIALAKARGKYVQTPKLSDTDVEQARVMIEMGIPKAEVARAFGVSRQTLYTSLRRSGSQTQAAGAIN
>NZ_CP025617.1|WP_119218020.1|81038_81308_-|hypothetical-protein
MPLNARSRIPITPHGSEESFEGTVGGLIRHGRHADPSAITALEQSLHRACRLPDTGDVREASLEHNLAVLTAADLERLEPGATITILDA
>NZ_CP025617.1|WP_119218021.1|81387_81657_-|hypothetical-protein
MTKATMIHPDGTTADVELHTIPADVDRLLGATAEIYNPGDYDGMDGDWSLWADARHSSSRPFNSTATEMIHDAGFDAREIITGPVLVIR
>NZ_CP025617.1|WP_119218022.1|81941_82145_-|hypothetical-protein
MANAILITPTGDVTEEQVNGLKDFQQHVGGYVEALSSDDGDHTIWLNEEARSPACRSTPRVTGSSTS
>NZ_CP025617.1|WP_119218023.1|82536_83202_-|hypothetical-protein
MGIITTADHLYRALDLAAWPTRLPATHTPGTPTPAVILRARQQCLELTGSDGTHTSRAGARALDASTGPLESGAMLRADQAHHLIKTLRALPERTLHPVAVEADDELVYLHLADSTLRLPNIAATVRPPVVDSALIDPDALIACRCLDTHVPAGVLAELTRTAHRHRRLGPLRLLAGGRPGYLGWDLSGWAHGMMRQDPAEAVSTHQPPFHLPESILNPAR
>NZ_CP025617.1|WP_119218024.1|83465_84101_-|hypothetical-protein
MSQLLYRPATLARALYAGSQAARAAATDTDPDAGGVGLALQPDGSLRIYSAAGESFSRAYADPAPRTDTGDEALLAVLSLHGTQTLLARLAELDDTYETVELRADAVGVYLVRDLWVIFASASNKADTLSPVDTLAVRPRDMAGPVPRAPRAAPSPAPCGGSTPACAWTCSRAGRPWAPRTASTPGPSASATICWPGTWATGRWAARTPPT
>NZ_CP025617.1|WP_087113807.1|84253_84484_-|hypothetical-protein
MIRAAEHLRALALRLPEWAIHQAFCMLHRRATVTATAAGFELHQTLVGGDDVHEETTTTARDPRADAAALLEVLGL
>NZ_CP025617.1|WP_087113805.1|84675_84966_-|hypothetical-protein
MDDYWDQIRITEAMLRLHEPTTAQGVIDVLHQYDPHGPGSVGDAFYSGANADHTLSGALADAGWTVSEYEAHYAYTLTSPDGRERLRYIEGDVYIA
>NZ_CP025617.1|WP_119218025.1|85078_85426_-|hypothetical-protein
MEAPPVLWGQTLEREHHYRQTLQLAVAQGRERPEDPLSPERIDSALASLPDVDGVPALRVLWHAGQQGTAEDVARALLERRAAQEAAAARAACAAQEVGRAQALHAAHDAATHSL
>NZ_CP025617.1|WP_119218026.1|86298_86748_-|hypothetical-protein
MSIINNPTTTIRSLRQALHAALATLGWASDHARTHGRVWFELTDAGYRLTVCRPREWARAYAPCEPVTHGQGLAPVALSFPDALLLSHELDSLPGTYPAHLAMHAPCLFLKVHNPDRPGHAYRHRVYRTATPRGPAPPRARSPCRRRTS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP025617_1	1.1\|80005\|33\|NZ_CP025617\|PILER-CR,CRT	80005-80037	33	NZ_CP025617	Micrococcus luteus strain SGAir0127 plasmid pSGAir0127	80005-80037	0	1.0
NZ_CP025617_1	1.2\|80067\|32\|NZ_CP025617\|PILER-CR,CRT	80067-80098	32	NZ_CP025617	Micrococcus luteus strain SGAir0127 plasmid pSGAir0127	80067-80098	0	1.0
NZ_CP025617_1	1.2\|80067\|32\|NZ_CP025617\|PILER-CR,CRT	80067-80098	32	NC_004954	Micrococcus sp. 28 plasmid pSD10, complete sequence	49602-49633	0	1.0
NZ_CP025617_1	1.3\|80128\|32\|NZ_CP025617\|PILER-CR,CRT	80128-80159	32	NZ_CP025617	Micrococcus luteus strain SGAir0127 plasmid pSGAir0127	80128-80159	0	1.0
NZ_CP025617_1	1.4\|80189\|32\|NZ_CP025617\|CRT	80189-80220	32	NZ_CP025617	Micrococcus luteus strain SGAir0127 plasmid pSGAir0127	80189-80220	0	1.0
NZ_CP025617_1	1.5\|80250\|32\|NZ_CP025617\|CRT	80250-80281	32	NZ_CP025617	Micrococcus luteus strain SGAir0127 plasmid pSGAir0127	80250-80281	0	1.0
NZ_CP025617_1	1.6\|80005\|38\|NZ_CP025617\|CRISPRCasFinder	80005-80042	38	NZ_CP025617	Micrococcus luteus strain SGAir0127 plasmid pSGAir0127	80005-80042	0	1.0
NZ_CP025617_1	1.7\|80067\|37\|NZ_CP025617\|CRISPRCasFinder	80067-80103	37	NZ_CP025617	Micrococcus luteus strain SGAir0127 plasmid pSGAir0127	80067-80103	0	1.0
NZ_CP025617_1	1.8\|80128\|37\|NZ_CP025617\|CRISPRCasFinder	80128-80164	37	NZ_CP025617	Micrococcus luteus strain SGAir0127 plasmid pSGAir0127	80128-80164	0	1.0
NZ_CP025617_1	1.9\|80189\|37\|NZ_CP025617\|CRISPRCasFinder	80189-80225	37	NZ_CP025617	Micrococcus luteus strain SGAir0127 plasmid pSGAir0127	80189-80225	0	1.0
NZ_CP025617_1	1.10\|80250\|37\|NZ_CP025617\|CRISPRCasFinder	80250-80286	37	NZ_CP025617	Micrococcus luteus strain SGAir0127 plasmid pSGAir0127	80250-80286	0	1.0
NZ_CP025617_1	1.7\|80067\|37\|NZ_CP025617\|CRISPRCasFinder	80067-80103	37	NC_004954	Micrococcus sp. 28 plasmid pSD10, complete sequence	49602-49638	4	0.892
NZ_CP025617_1	1.2\|80067\|32\|NZ_CP025617\|PILER-CR,CRT	80067-80098	32	NC_041912	Aquamicrobium phage P14, complete genome	19234-19265	8	0.75
NZ_CP025617_1	1.4\|80189\|32\|NZ_CP025617\|CRT	80189-80220	32	NZ_CP013108	Sinorhizobium americanum strain CFNEI 73 plasmid A, complete sequence	185457-185488	9	0.719
NZ_CP025617_1	1.4\|80189\|32\|NZ_CP025617\|CRT	80189-80220	32	NZ_CP020811	Mycobacterium dioxanotrophicus strain PH-06 plasmid unnamed2, complete sequence	15327-15358	9	0.719
NZ_CP025617_1	1.4\|80189\|32\|NZ_CP025617\|CRT	80189-80220	32	NZ_CP016453	Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence	130290-130321	9	0.719
NZ_CP025617_1	1.4\|80189\|32\|NZ_CP025617\|CRT	80189-80220	32	NZ_CP016453	Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence	583015-583046	9	0.719
NZ_CP025617_1	1.2\|80067\|32\|NZ_CP025617\|PILER-CR,CRT	80067-80098	32	NZ_CP026517	Deinococcus sp. NW-56 plasmid unnamed1, complete sequence	366705-366736	10	0.688

1. spacer 1.1|80005|33|NZ_CP025617|PILER-CR,CRT matches to NZ_CP025617 (Micrococcus luteus strain SGAir0127 plasmid pSGAir0127) position: , mismatch: 0, identity: 1.0

aggggaacaggggaacaaacactcgctcaccgg	CRISPR spacer
aggggaacaggggaacaaacactcgctcaccgg	Protospacer
*********************************

2. spacer 1.2|80067|32|NZ_CP025617|PILER-CR,CRT matches to NZ_CP025617 (Micrococcus luteus strain SGAir0127 plasmid pSGAir0127) position: , mismatch: 0, identity: 1.0

tacgtcagccagatcatgcagctcgcccaagc	CRISPR spacer
tacgtcagccagatcatgcagctcgcccaagc	Protospacer
********************************

3. spacer 1.2|80067|32|NZ_CP025617|PILER-CR,CRT matches to NC_004954 (Micrococcus sp. 28 plasmid pSD10, complete sequence) position: , mismatch: 0, identity: 1.0

tacgtcagccagatcatgcagctcgcccaagc	CRISPR spacer
tacgtcagccagatcatgcagctcgcccaagc	Protospacer
********************************

4. spacer 1.3|80128|32|NZ_CP025617|PILER-CR,CRT matches to NZ_CP025617 (Micrococcus luteus strain SGAir0127 plasmid pSGAir0127) position: , mismatch: 0, identity: 1.0

ttgcacccctcccccgttagagggtggaacag	CRISPR spacer
ttgcacccctcccccgttagagggtggaacag	Protospacer
********************************

5. spacer 1.4|80189|32|NZ_CP025617|CRT matches to NZ_CP025617 (Micrococcus luteus strain SGAir0127 plasmid pSGAir0127) position: , mismatch: 0, identity: 1.0

acgaacgtgttgcgctcgccctcgtggacctg	CRISPR spacer
acgaacgtgttgcgctcgccctcgtggacctg	Protospacer
********************************

6. spacer 1.5|80250|32|NZ_CP025617|CRT matches to NZ_CP025617 (Micrococcus luteus strain SGAir0127 plasmid pSGAir0127) position: , mismatch: 0, identity: 1.0

cagatggcggccttgaatcggatcgaataccg	CRISPR spacer
cagatggcggccttgaatcggatcgaataccg	Protospacer
********************************

7. spacer 1.6|80005|38|NZ_CP025617|CRISPRCasFinder matches to NZ_CP025617 (Micrococcus luteus strain SGAir0127 plasmid pSGAir0127) position: , mismatch: 0, identity: 1.0

aggggaacaggggaacaaacactcgctcaccggggaag	CRISPR spacer
aggggaacaggggaacaaacactcgctcaccggggaag	Protospacer
**************************************

8. spacer 1.7|80067|37|NZ_CP025617|CRISPRCasFinder matches to NZ_CP025617 (Micrococcus luteus strain SGAir0127 plasmid pSGAir0127) position: , mismatch: 0, identity: 1.0

tacgtcagccagatcatgcagctcgcccaagcggaag	CRISPR spacer
tacgtcagccagatcatgcagctcgcccaagcggaag	Protospacer
*************************************

9. spacer 1.8|80128|37|NZ_CP025617|CRISPRCasFinder matches to NZ_CP025617 (Micrococcus luteus strain SGAir0127 plasmid pSGAir0127) position: , mismatch: 0, identity: 1.0

ttgcacccctcccccgttagagggtggaacagggaag	CRISPR spacer
ttgcacccctcccccgttagagggtggaacagggaag	Protospacer
*************************************

10. spacer 1.9|80189|37|NZ_CP025617|CRISPRCasFinder matches to NZ_CP025617 (Micrococcus luteus strain SGAir0127 plasmid pSGAir0127) position: , mismatch: 0, identity: 1.0

acgaacgtgttgcgctcgccctcgtggacctgggcga	CRISPR spacer
acgaacgtgttgcgctcgccctcgtggacctgggcga	Protospacer
*************************************

11. spacer 1.10|80250|37|NZ_CP025617|CRISPRCasFinder matches to NZ_CP025617 (Micrococcus luteus strain SGAir0127 plasmid pSGAir0127) position: , mismatch: 0, identity: 1.0

cagatggcggccttgaatcggatcgaataccgggaag	CRISPR spacer
cagatggcggccttgaatcggatcgaataccgggaag	Protospacer
*************************************

12. spacer 1.7|80067|37|NZ_CP025617|CRISPRCasFinder matches to NC_004954 (Micrococcus sp. 28 plasmid pSD10, complete sequence) position: , mismatch: 4, identity: 0.892

tacgtcagccagatcatgcagctcgcccaagcggaag	CRISPR spacer
tacgtcagccagatcatgcagctcgcccaagccgcca	Protospacer
******************************** *  .

13. spacer 1.2|80067|32|NZ_CP025617|PILER-CR,CRT matches to NC_041912 (Aquamicrobium phage P14, complete genome) position: , mismatch: 8, identity: 0.75

tacgtcagccagatcatgcagctcgcccaagc	CRISPR spacer
caccacgaccagatcatccagttcgcccaaga	Protospacer
.**  *..********* ***.*********

14. spacer 1.4|80189|32|NZ_CP025617|CRT matches to NZ_CP013108 (Sinorhizobium americanum strain CFNEI 73 plasmid A, complete sequence) position: , mismatch: 9, identity: 0.719

acgaacgtgttgcgctcgccctcgtggacctg	CRISPR spacer
aacaacggtttgcgctcgccctcgtgccggcg	Protospacer
*  ****  *****************    .*

15. spacer 1.4|80189|32|NZ_CP025617|CRT matches to NZ_CP020811 (Mycobacterium dioxanotrophicus strain PH-06 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

acgaacgtgttgcgctcgccctcgtggacctg	CRISPR spacer
gcggcgatgttgcgcaggccctcgtggaccat	Protospacer
.**.  .********  *************

16. spacer 1.4|80189|32|NZ_CP025617|CRT matches to NZ_CP016453 (Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence) position: , mismatch: 9, identity: 0.719

acgaacgtgttgcgctcgccctcgtggacctg	CRISPR spacer
aaacagctgttgcgctcgacctcgtggcccga	Protospacer
* . *  *********** ******** ** .

17. spacer 1.4|80189|32|NZ_CP025617|CRT matches to NZ_CP016453 (Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence) position: , mismatch: 9, identity: 0.719

acgaacgtgttgcgctcgccctcgtggacctg	CRISPR spacer
aaacagctgttgcgctcgacctcgtggcccga	Protospacer
* . *  *********** ******** ** .

18. spacer 1.2|80067|32|NZ_CP025617|PILER-CR,CRT matches to NZ_CP026517 (Deinococcus sp. NW-56 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

tacgtcagccagatcatgcagctcgcccaagc	CRISPR spacer
ggccgcagcctgaacatgcagctcgccctgag	Protospacer
 .*  ***** ** ************** ..

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP025616_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP025616_1

514316-516515

Unclear

Consensus_repeat	Method
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	PILER-CR
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	CRISPRCasFinder
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	CRT

30 spacers

cas2,cas1,csb3,cas3,csb2gr5,cas7

The CRISPR arrays of NZ_CP025616_1

>merge|NZ_CP025616|1|514316-516515|PILER-CR,CRISPRCasFinder,CRT
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGCTTCCGGCTCAACCTCATCGTCGCCTACCAGAACTGTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGCATGAAGGCCACGGTGCCGCTCATGGTGTCCAACGCGGAGGTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGCCGGCTGATCGACGACAGATCCGCGTGTCCCAGCGCAGTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGCAATCTCACAGGGGGCGGTGAGAAGATTGAATTGGGTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGCATGACAATGAAGGGCCGGGATGTGATGCCCCGGCATGTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGCCTCTGGCTCATGAGGCGCGTCTCCGGCCTCATGTCCGTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGCCCGCTGGACCAGTATTCCTGGGTGGCCCTGGGCAACGTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGCACCACCGTGGACCTCGCAGACCCCGCCAACATGGGCGAGTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGCATGTTCTTGCCGGACGACTCCTGACGGATCAGCGCGTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGCTGCCAGGCAGAGGCCGAGGCAGACCGGCAGCGATACGGCGGTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGCGAACGGCTGATCGAGGGCATGGTGGAGCACCCGCTGTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGCCCCAGCGGAAGGCGATGGCCCGTTTCCGTGGTCTGTGGTCTCCGCTCCTGTGGGGAGCAGACTTCGTTGAGGCACGTCCACGAAGGCGGGTCCGAACGCGGCCGCCGTGAGTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGCGTGATCGTCGGCCCGGGGCGTCCGGACGTGCCGTCCAGTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGCGCCGGGTAGTAGTCGTCGTAGACGGTGCTGGGCGTGTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGCTCTCAAGGTGACGTGTATCTCCTTGTCGAGTCCTAGTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGCGTCGGCATCGCGGGGCAGGTCCTCTGGCTGGTCTACTGTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGCGGGCTGGCCATGCCGAACACGGACGCGGCGCTGCTGTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGCGACAAGGGCACCCGCGACTGGGTGCGCATGATCGGTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGCAGGCCGTGCCGGATGAGGCCTTCCCCGGTGTCCGGTCTCTGCTCCTGTGGGGAGCGGACTTCGTTGAGGCGTGGACGCTGCGACGGCGAACGTCGCCGGCGAGGGGTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGCTCGATGGGCACGCCCGGGGTCAGCGGGTCCTCCATGAGGGTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGCTGGCCTACGTGGTATGCACCAGTTCCACGTCTCCAGTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGCCTCGAGGCGGGCCGCATCCTCGGCGAGGACGTGGATAGTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGCGACCCCGTCGCGAAGCCTGCCCGGGTGGACGGTGTGTCTCCGCTCCTTTTGGGAGCGGACTTCGTTGAGGCCGCGGCGGCGGGGCGGAACGGGCCTCGTCCAGTCCAGTCTCCGCTCCTTTGGGGAGCGGACTTCGTTGAGGCCGCTACCTGGCCGGCATGCTGCGCGAGGCCGTGCTCGTCTCCGCTCCTTTGGGGAGCGGACTTCGTTGAGGCGGGGACACGGTGACCGCCACGGTCACGGTCCGCTCCTGTCTCCGCTCCTTTGGGGAGCGGACTTCGTTGAGGCCAGCGCACCGGATCGCGGTTCACGTTGCTTGCCCTTGTCTCCGCTCCTTTGGGGAGCGGACTTCGTTGAGGCCCGTTCGGTGTCGTCGCTCGCTCCTCGCTGACCTGGATGTGTCTCCTCTCCTTCGGAACGGACTTCGTCAGCGC

>NZ_CP025616|1|1|514316-516441|PILER-CR
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	TTCCGGCTCAACCTCATCGTCGCCTACCAGAACT
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	ATGAAGGCCACGGTGCCGCTCATGGTGTCCAACGCGGAG
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	CGGCTGATCGACGACAGATCCGCGTGTCCCAGCGCA
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	AATCTCACAGGGGGCGGTGAGAAGATTGAATTGG
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	ATGACAATGAAGGGCCGGGATGTGATGCCCCGGCAT
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	CTCTGGCTCATGAGGCGCGTCTCCGGCCTCATGTCC
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	CCGCTGGACCAGTATTCCTGGGTGGCCCTGGGCAAC
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	ACCACCGTGGACCTCGCAGACCCCGCCAACATGGGCGA
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	ATGTTCTTGCCGGACGACTCCTGACGGATCAGCGC
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	TGCCAGGCAGAGGCCGAGGCAGACCGGCAGCGATACGGCG
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	GAACGGCTGATCGAGGGCATGGTGGAGCACCCGCT
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	CCCAGCGGAAGGCGATGGCCCGTTTCCGTGGTCTGTG
GTCTCCGCTCCTGTGGGGAGCAGACTTCGTTGAGGC	ACGTCCACGAAGGCGGGTCCGAACGCGGCCGCCGTGA
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	GTGATCGTCGGCCCGGGGCGTCCGGACGTGCCGTCCA
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	GCCGGGTAGTAGTCGTCGTAGACGGTGCTGGGCGT
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	TCTCAAGGTGACGTGTATCTCCTTGTCGAGTCCTA
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	GTCGGCATCGCGGGGCAGGTCCTCTGGCTGGTCTACT
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	GGGCTGGCCATGCCGAACACGGACGCGGCGCTGCT
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	GACAAGGGCACCCGCGACTGGGTGCGCATGATCG
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	AGGCCGTGCCGGATGAGGCCTTCCCCGGTGTCCG
GTCTCTGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	GTGGACGCTGCGACGGCGAACGTCGCCGGCGAGGG
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	TCGATGGGCACGCCCGGGGTCAGCGGGTCCTCCATGAGG
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	TGGCCTACGTGGTATGCACCAGTTCCACGTCTCCA
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	CTCGAGGCGGGCCGCATCCTCGGCGAGGACGTGGATA
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	GACCCCGTCGCGAAGCCTGCCCGGGTGGACGGTGT
GTCTCCGCTCCTTTTGGGAGCGGACTTCGTTGAGGC	CGCGGCGGCGGGGCGGAACGGGCCTCGTCCAGTCCA
GTCTCCGCTCCTTTGGGGAGCGGACTTCGTTGAGGC	CGCTACCTGGCCGGCATGCTGCGCGAGGCCGTGCTC
GTCTCCGCTCCTTTGGGGAGCGGACTTCGTTGAGGC	GGGGACACGGTGACCGCCACGGTCACGGTCCGCTCCT
GTCTCCGCTCCTTTGGGGAGCGGACTTCGTTGAGGC	CAGCGCACCGGATCGCGGTTCACGTTGCTTGCCCTT
GTCTCCGCTCCTTTGGGGAGCGGACTTCGTTGAGGC

>NZ_CP025616|1|1|514316-516441|CRISPRCasFinder
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	TTCCGGCTCAACCTCATCGTCGCCTACCAGAACT
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	ATGAAGGCCACGGTGCCGCTCATGGTGTCCAACGCGGAG
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	CGGCTGATCGACGACAGATCCGCGTGTCCCAGCGCA
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	AATCTCACAGGGGGCGGTGAGAAGATTGAATTGG
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	ATGACAATGAAGGGCCGGGATGTGATGCCCCGGCAT
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	CTCTGGCTCATGAGGCGCGTCTCCGGCCTCATGTCC
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	CCGCTGGACCAGTATTCCTGGGTGGCCCTGGGCAAC
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	ACCACCGTGGACCTCGCAGACCCCGCCAACATGGGCGA
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	ATGTTCTTGCCGGACGACTCCTGACGGATCAGCGC
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	TGCCAGGCAGAGGCCGAGGCAGACCGGCAGCGATACGGCG
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	GAACGGCTGATCGAGGGCATGGTGGAGCACCCGCT
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	CCCAGCGGAAGGCGATGGCCCGTTTCCGTGGTCTGTG
GTCTCCGCTCCTGTGGGGAGCAGACTTCGTTGAGGC	ACGTCCACGAAGGCGGGTCCGAACGCGGCCGCCGTGA
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	GTGATCGTCGGCCCGGGGCGTCCGGACGTGCCGTCCA
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	GCCGGGTAGTAGTCGTCGTAGACGGTGCTGGGCGT
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	TCTCAAGGTGACGTGTATCTCCTTGTCGAGTCCTA
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	GTCGGCATCGCGGGGCAGGTCCTCTGGCTGGTCTACT
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	GGGCTGGCCATGCCGAACACGGACGCGGCGCTGCT
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	GACAAGGGCACCCGCGACTGGGTGCGCATGATCG
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	AGGCCGTGCCGGATGAGGCCTTCCCCGGTGTCCG
GTCTCTGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	GTGGACGCTGCGACGGCGAACGTCGCCGGCGAGGG
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	TCGATGGGCACGCCCGGGGTCAGCGGGTCCTCCATGAGG
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	TGGCCTACGTGGTATGCACCAGTTCCACGTCTCCA
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	CTCGAGGCGGGCCGCATCCTCGGCGAGGACGTGGATA
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	GACCCCGTCGCGAAGCCTGCCCGGGTGGACGGTGT
GTCTCCGCTCCTTTTGGGAGCGGACTTCGTTGAGGC	CGCGGCGGCGGGGCGGAACGGGCCTCGTCCAGTCCA
GTCTCCGCTCCTTTGGGGAGCGGACTTCGTTGAGGC	CGCTACCTGGCCGGCATGCTGCGCGAGGCCGTGCTC
GTCTCCGCTCCTTTGGGGAGCGGACTTCGTTGAGGC	GGGGACACGGTGACCGCCACGGTCACGGTCCGCTCCT
GTCTCCGCTCCTTTGGGGAGCGGACTTCGTTGAGGC	CAGCGCACCGGATCGCGGTTCACGTTGCTTGCCCTT
GTCTCCGCTCCTTTGGGGAGCGGACTTCGTTGAGGC

>NZ_CP025616|1|1|514316-516515|CRT
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	TTCCGGCTCAACCTCATCGTCGCCTACCAGAACT
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	ATGAAGGCCACGGTGCCGCTCATGGTGTCCAACGCGGAG
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	CGGCTGATCGACGACAGATCCGCGTGTCCCAGCGCA
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	AATCTCACAGGGGGCGGTGAGAAGATTGAATTGG
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	ATGACAATGAAGGGCCGGGATGTGATGCCCCGGCAT
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	CTCTGGCTCATGAGGCGCGTCTCCGGCCTCATGTCC
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	CCGCTGGACCAGTATTCCTGGGTGGCCCTGGGCAAC
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	ACCACCGTGGACCTCGCAGACCCCGCCAACATGGGCGA
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	ATGTTCTTGCCGGACGACTCCTGACGGATCAGCGC
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	TGCCAGGCAGAGGCCGAGGCAGACCGGCAGCGATACGGCG
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	GAACGGCTGATCGAGGGCATGGTGGAGCACCCGCT
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	CCCAGCGGAAGGCGATGGCCCGTTTCCGTGGTCTGTG
GTCTCCGCTCCTGTGGGGAGCAGACTTCGTTGAGGC	ACGTCCACGAAGGCGGGTCCGAACGCGGCCGCCGTGA
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	GTGATCGTCGGCCCGGGGCGTCCGGACGTGCCGTCCA
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	GCCGGGTAGTAGTCGTCGTAGACGGTGCTGGGCGT
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	TCTCAAGGTGACGTGTATCTCCTTGTCGAGTCCTA
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	GTCGGCATCGCGGGGCAGGTCCTCTGGCTGGTCTACT
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	GGGCTGGCCATGCCGAACACGGACGCGGCGCTGCT
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	GACAAGGGCACCCGCGACTGGGTGCGCATGATCG
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	AGGCCGTGCCGGATGAGGCCTTCCCCGGTGTCCG
GTCTCTGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	GTGGACGCTGCGACGGCGAACGTCGCCGGCGAGGG
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	TCGATGGGCACGCCCGGGGTCAGCGGGTCCTCCATGAGG
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	TGGCCTACGTGGTATGCACCAGTTCCACGTCTCCA
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	CTCGAGGCGGGCCGCATCCTCGGCGAGGACGTGGATA
GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC	GACCCCGTCGCGAAGCCTGCCCGGGTGGACGGTGT
GTCTCCGCTCCTTTTGGGAGCGGACTTCGTTGAGGC	CGCGGCGGCGGGGCGGAACGGGCCTCGTCCAGTCCA
GTCTCCGCTCCTTTGGGGAGCGGACTTCGTTGAGGC	CGCTACCTGGCCGGCATGCTGCGCGAGGCCGTGCTC
GTCTCCGCTCCTTTGGGGAGCGGACTTCGTTGAGGC	GGGGACACGGTGACCGCCACGGTCACGGTCCGCTCCT
GTCTCCGCTCCTTTGGGGAGCGGACTTCGTTGAGGC	CAGCGCACCGGATCGCGGTTCACGTTGCTTGCCCTT
GTCTCCGCTCCTTTGGGGAGCGGACTTCGTTGAGGC	CCGTTCGGTGTCGTCGCTCGCTCCTCGCTGACCTGGAT
GTGTCTCCTCTCCTTCGGAACGGACTTCGTCAGCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP025616.2\|WP_119217673.1\|519228_519804_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025616.2\|WP_041105068.1\|513817_514123_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP025616.2\|WP_051995337.1\|524511_524991_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|176867
NZ_CP025616.2\|WP_119217675.1\|520475_521507_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377396
NZ_CP025616.2\|WP_119217670.1\|511671_512202_+\|hypothetical-protein	csb3	cd09764_csb3_CAS-I-U	gnl\|CDD\|187733
NZ_CP025616.2\|WP_101965897.1\|504084_505005_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187613
NZ_CP025616.2\|WP_119217669.1\|508370_511187_+\|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09696_cas3_CAS-I-U	gnl\|CDD\|274235
NZ_CP025616.2\|WP_041104135.1\|523331_524150_-\|spermidine-synthase	unknown	unknown	gnl\|CDD\|223498
NZ_CP025616.2\|WP_119217677.1\|524185_524440_+\|NrdH-redoxin	unknown	unknown	gnl\|CDD\|131255
NZ_CP025616.2\|WP_078025320.1\|505561_506806_+\|type-I-U-CRISPR-associated-protein-Cas7	cas7	cd09738_cas7_CAS-I-U	gnl\|CDD\|378223
NZ_CP025616.2\|WP_119217676.1\|521546_522782_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341042
NZ_CP025616.2\|WP_119217668.1\|506808_508374_+\|type-I-U-CRISPR-associated-protein-Cas5/Cas6	csb2gr5	cls000315_csb2gr5_CAS-I-U	gnl\|CDD\|274005
NZ_CP025616.2\|WP_119217671.1\|512198_513821_+\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187766
NZ_CP025616.2\|WP_119217674.1\|519894_520458_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
NZ_CP025616.2\|WP_082067597.1\|522806_523316_+\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224759
NZ_CP025616.2\|WP_119217957.1\|517679_518867_-\|tryptophan-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|183851
NZ_CP025616.2\|WP_119217667.1\|500869_502048_+\|cystathionine-gamma-lyase	unknown	unknown	gnl\|CDD\|236061
NZ_CP025616.2\|WP_119217672.1\|516923_517628_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223505
NZ_CP025616.2\|WP_020627042.1\|499059_500808_-\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223562
NZ_CP025616.2\|WP_101967770.1\|502235_503867_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|224490

Protein	Function_ID	Function_description	E-value
NZ_CP025616.2\|WP_041105068.1\|513817_514123_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.8275e-20
NZ_CP025616.2\|WP_051995337.1\|524511_524991_+\|hypothetical-protein	gnl\|CDD\|176867	cd07825, SRPBCC_7, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.	8.93152e-60
NZ_CP025616.2\|WP_119217675.1\|520475_521507_+\|hypothetical-protein	gnl\|CDD\|377396	pfam04657, DMT_YdcZ, Putative inner membrane exporter, YdcZ. DMT_YdcZ is a family of putative inner membrane exporters from both Gram-positive and Gram-negative bacteria.	1.45343e-21
NZ_CP025616.2\|WP_119217670.1\|511671_512202_+\|hypothetical-protein	gnl\|CDD\|187733	cd09764, Csb3_I-U, CRISPR/Cas system-associated RAMP superfamily protein Csb3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; Might be a catalytically active RNA endoribonuclease.	2.12702e-21
NZ_CP025616.2\|WP_101965897.1\|504084_505005_+\|SDR-family-oxidoreductase	gnl\|CDD\|187613	cd05355, SDR_c1, classical (c) SDR, subgroup 1. These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.21451e-148
NZ_CP025616.2\|WP_119217669.1\|508370_511187_+\|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|274235	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.	4.53994e-70
NZ_CP025616.2\|WP_041104135.1\|523331_524150_-\|spermidine-synthase	gnl\|CDD\|223498	COG0421, SpeE, Spermidine synthase [Amino acid transport and metabolism].	2.75024e-10
NZ_CP025616.2\|WP_119217677.1\|524185_524440_+\|NrdH-redoxin	gnl\|CDD\|131255	TIGR02200, conserved_hypothetical_protein, Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.	1.13966e-17
NZ_CP025616.2\|WP_078025320.1\|505561_506806_+\|type-I-U-CRISPR-associated-protein-Cas7	gnl\|CDD\|378223	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053). This entry is found in CRISPR-associated (cas) proteins in the genomes of Geobacter sulfurreducens PCA and Desulfotalea psychrophila LSv54 (both Desulfobacterales from the Deltaproteobacteria), Gemmata obscuriglobus (a Planctomycete), and Actinomyces naeslundii MG1 (Actinobacteria).	1.52839e-31
NZ_CP025616.2\|WP_119217676.1\|521546_522782_-\|MFS-transporter	gnl\|CDD\|341042	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli membrane proteins, YfcJ and YhhS, Bacillus subtilis uncharacterized MFS-type transporter YwoG, and similar proteins. YfcJ and YhhS are putative arabinose efflux transporters. YhhS has been implicated glyphosate resistance. YfcJ-like arabinose efflux transporters belong to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.2576e-70
NZ_CP025616.2\|WP_119217668.1\|506808_508374_+\|type-I-U-CRISPR-associated-protein-Cas5/Cas6	gnl\|CDD\|274005	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system. This model represents a CRISPR-associated protein from the Dpsyc subtype (a type I-C variant), named for Desulfotalea psychrophila LSv54. CRISPR systems confer resistance in prokaryotes to invasive DNA or RNA, including phage and plasmids. CRISPR-associated proteins typically are found near CRISPR repeats and other CRISPR-associated proteins, have low levels of sequence identify, have sequence relationships that suggest lateral transfer, and show some sequence similarity to DNA-active proteins such as helicases and repair proteins.	1.11757e-57
NZ_CP025616.2\|WP_119217671.1\|512198_513821_+\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187766	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	7.09157e-92
NZ_CP025616.2\|WP_119217674.1\|519894_520458_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	9.68201e-21
NZ_CP025616.2\|WP_082067597.1\|522806_523316_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224759	COG1846, MarR, Transcriptional regulators [Transcription].	3.48656e-15
NZ_CP025616.2\|WP_119217957.1\|517679_518867_-\|tryptophan-synthase-subunit-beta	gnl\|CDD\|183851	PRK13028, PRK13028, tryptophan synthase subunit beta; Provisional.	0
NZ_CP025616.2\|WP_119217667.1\|500869_502048_+\|cystathionine-gamma-lyase	gnl\|CDD\|236061	PRK07582, PRK07582, cystathionine gamma-lyase; Validated.	1.55867e-173
NZ_CP025616.2\|WP_119217672.1\|516923_517628_-\|hypothetical-protein	gnl\|CDD\|223505	COG0428, COG0428, Predicted divalent heavy-metal cations transporter [Inorganic ion transport and metabolism].	5.55805e-08
NZ_CP025616.2\|WP_020627042.1\|499059_500808_-\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	4.35603e-114
NZ_CP025616.2\|WP_101967770.1\|502235_503867_+\|amidohydrolase	gnl\|CDD\|224490	COG1574, COG1574, Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only].	2.00424e-124

>NZ_CP025616.2|WP_041105068.1|513817_514123_+|CRISPR-associated-endonuclease-Cas2
MSARDRLRRRLIAYDIPDDRRRSRAARVLEGFGDRVQYSVFVVDALPAQFVSLQAALEAVLDPGEDSVLVCDLGLTATLGAEQFSFLGRSREISVDGPIII
>NZ_CP025616.2|WP_119217671.1|512198_513821_+|CRISPR-associated-endonuclease-Cas1
MTEHDTGEPYADSLPFSLVAHWSFCPRRAWLEAMDEKAPKVAQIQQGVVDHARVDVPTTREAQTMRGVDVRDPSLGVHGRVDRVERVPSGRLRVVEHKATPVKRAARISDANRLQLVLQTMALESQGNTVEDAEVYFTTHHRRVPIEISAADRKAARDAVASARSVVNGKTAPAPLLDDPRCMRCSHASVCLPEERQEAEVLSRIVPPDPAGETLHLTVPGSRASMSAGRITVVKGDERLASIPLERVSAVVVHGNVDLSGALLRELMWRGLPCVWCTGAGRVVGWTNGVKPPNGGARFRQFAASAEGRVDIAREFVVAKVANQATILRRFGGMPAVVKRLRSATRLASTATSTGQLFGIEGRAAAEYFAGFPGLLAPGVDAGVAESFPGRVGRGATDPLNIALNYGYGMLLSEVIRAVLACGLDPHAGVLHSSGRNKPALALDLMEEFRPPVVDSAILAAFNNGELGRLSFTHVLGGARLTQTGRRKVIAAVERRLGTEFKHPVFGYRVTWRRAIEVQARMFLGVLDGSQEVYKGVRVR
>NZ_CP025616.2|WP_119217670.1|511671_512202_+|hypothetical-protein
MEFIAHSLLPTGRAVAGRAVEAVTSGLLGTTVEDEPGKNKPDSRTATGMAPLGPVDAARAWVGLWALAALPVWADSRGRSVSSAHIPARRESLARLLMPVPTSWVTVARMQAALRSRYLLVAGEDATAPSLGSAETMAAQTILEEWGLAQILSFPVNVTGSASAPERRTLAAEALR
>NZ_CP025616.2|WP_119217669.1|508370_511187_+|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3
MNVNDKAALTVAIDEFDEFFAAVNHGREPYAWQRALLRQVVTTGRWPDAVVAPTGAGKSSVLEVHVFAVAMTHAPGWEGARAPRRLWHVVGRRALVDDMASRAEGVFDQLAEITDVPGEAPLSRVAAALRRISPAGQPGSVTTLRGGIAPERGWQDDPVSCQVICATPDMAGSRLLFRGYGSTAGMRPREAGLIAYDSVLILDEAHLNRQLLTTARRVASLAGESPLAAHVPVLQVVETTATPAGLAPAQTSIGVELSDIRTGAVGEALLRRLDRPKPVHLHLDGPWLVGGTARETTQGAQEIARMAADAVQAGHTPVGVVMNRVASALAVHRALLGLNGGLDVALVVGPRRRWEQALERSRTPDVYVATQAIEVGLDLDFGFLITDIASGSALAQRAGRLNRTGARESAPVHVLCPSADPTAKTAAPYEVQDITDALEWLRDRAEDPKGVSPAALLEHPAPSTAPARPVLSEIEAARAALFSRTSEALAVEPDLTLWLRDSLDAETDVAVVGRRLPRLGEDAGEDWSGLDQAESAALLTTAPPQPHEAYPVTLSRLRLLLAGGRRGRATPAFVRRGRQWTLVDPEASGHGIVPGDVVCVPHDWAATHHHVLVEDGQEPVGDVLDPRSPDGTMLSLEPVKASRRRVVFMTGVASPGVQDYLRCSLLEVCAGLQEADVPLTLPSVLDALDDRGQSAWLTAYLGQWADPDLAARFDVQVHVGGRAPDSPQQAAWVVFELLDAADPDDAQLSATTGRSPVSLADHQRDVADRAGEFAQILGLPESLKRTLTVAGAHHDDGKSDERYQAWLTQGVAGADEPMAKSLLSALPFRQSRFLPAGWRHEQLSAAMLRAHADGADALAVRLVGTSHGHGRGTFLMGAESLVHPEAAPHVRMAAEELFDVGVWDALVLSVEQTWGLWAVAWLEAVLRAADVTISKEGR
>NZ_CP025616.2|WP_119217668.1|506808_508374_+|type-I-U-CRISPR-associated-protein-Cas5/Cas6
MGGLVISADFPLGVYTGHGPDGGAERFPDVARIFSALVQAAAAGTLSTGDPEAPFTAESLAALDWLEEHPPDALVLPGHTPVAPGVRRFAYRKEGVFLKEVGKTNYKVTGRPVSDGTALGGPVQWVWDDGPSGTDTQVCSTLEQLCADVPHLGEASSPVRLTVHEGEGLPAPTHRRDRNASLRAVPGAVRQAMPSPGRRAELDRAHAATTLGRKPSASGDKHTTSAVPHATLPPRDHLRSGIFAPVEHHEPDVPWTQVLAVPVIGANSTVPEERYVSVCVALHRALVSRLGPDAPPEITGRYAPSDAPPANRVALHLVPGDLPALPFSDGRDRFLVLVPRGMPGPALGMLASAVAGVRRVVTSEHQLTVAPEEIEVYDGAQFWKAPPEGAVRTWDAQPAVVVERRLKSKPPIRDVDLAAAWSLGNVLRDLEPAFTTKDPVARHAAVVESGARLRGRAFRTLTPTAYVHRTDRRSPIEPFRLTLTLSTVVPDRAILALGQSRHLGCGLLVPTDIPGSTQERS
>NZ_CP025616.2|WP_078025320.1|505561_506806_+|type-I-U-CRISPR-associated-protein-Cas7
MSDFDTLSLEDLLAACAPGGSTSLLSETPLRPAGGPGAVIAPAKVIEGRGEPTYAYERRMELDEAGQPRPVWTVVVDSKQSVSNRDEDAIISARRDQGTPEGEALRKVPTIEVRYGEAVESDLSLPHRAFDGHIRAATLDGAPVTQTEAYRALRDATKLDARALLDAAPTALVLGAWDSTRKSHQGRYQSCMTGEIIGVLADQDQEGGAPRTNRRAAGRVDPVAASVKPSAKDVEALVKAQAGELSAKLQDKVLAEAKKKGETGSSMSTLGLGHIPPVLGELGGVACRSIMRRRLLSFSALRQLRFGGTTEQDVACRALLAAYALLGMALSDRELHLRANCHLVESDEPTVTLDLRYGKSRALAPITDEVAVQVFEAALAHAKSVAGVEWNGQTIQLVGDPAILGAASTDDVEV
>NZ_CP025616.2|WP_101965897.1|504084_505005_+|SDR-family-oxidoreductase
MAHDDANTTTTDQLTLQDPTKRYPVISPPEQSLPGTGLDAEMTPKADLGEKSYRGTGRLEGRKALITGGDSGIGAATAIAFAREGADVVITYLPEEEKDAQHVLEVLQAEGRTAAGIPGDLRDKTFCADLVAQAVEKLGGLDVLVNNGGKQVAQDSIEDIDDEQLEATFDINILAQFRLVKAALPHLKPGSTIINTTSVVAYMAPEQLVDYSSTKAAINTFTKALGQQLAPKGIRVNAVAPGPIWTPLQPSGGQKPEALPEFGQSTPLGRAGQPTELAPAYVFLASPESSYVVGATIPVTGGMPTP
>NZ_CP025616.2|WP_101967770.1|502235_503867_+|amidohydrolase
MQLDLIVENARLITGDPARPSASRLGVWRGVVVGVDEELDGLTARERLDARGRTVLAGFNDAHAHSVWFGQSRLDVDLEGARTAEEVHRRVRARAAELDPGAWVTCTGFDPGHLTGPQPDRDSLDAAASGRPVLIRHNTGHAVTVSGAVLVLAGVGEQVLQQPEGGRILTDAAGRPTGLLEETAMSLVTRLLQPESHEHIGACLARASQEYAAEGITSVTDAGVAGGWIGHSPLEFGAYQRARDAGLLRTRFQTMVALDALRPVDGHPDDGTHLTLDAGVRTGVGDEWLQIGPAKVFTDGSMLGQTAAMTEDYCGHGHGRGYLQQDAGEMRRACLGAAAAGWALALHAIGDAALDFALDVIAEARGRFGRPVMPHRVEHGGVVRDDQVARMAELEVVMATQPNFIGAFGGSVRERIGPERAALSYPAGRLLRAGLVLPGSSDRPVAGGRPLEVIQDFVLRRTETGEQYGPDAERLTVAEALHAYTVGSAEATGWGGRKGRLVAGQLADFTVLSEDPRAVPSDQIAAIDVVATAVGGEFVHGGL
>NZ_CP025616.2|WP_119217667.1|500869_502048_+|cystathionine-gamma-lyase
MSAAPPPPAFGTVLHHRAHGMAPGESISPPLVHASAFHLPGADPDGAPTAPGADVPFQYARWATPTWSALEAALGALEDADVAVVPSGMAAIAAVLLPLLHPGDRALLPADGYGPTRALAAEHLTPRGVHVDLVATQGLAHADLSGYDLVLVETPSNPGLRVADLADVAARAHANGRRDGAGALVVVDNTLLTPLGQRPLELGADVVVASDTKAVNGHTDALGGHVASRDPQVMARVRDWRTLAGGILGTHEAWLIHRGLETLEVRFARMCASAQAVAELAAGHPAVRAVVYPGLADHPDAEVVARQMTAAGGLVGLRFADAAAAERFIAAAQYVVPQTSFGGTHTAAERRARWGDDVPDGFVRLSVGVEPTAELLADLERAMTAAGGGPTA
>NZ_CP025616.2|WP_020627042.1|499059_500808_-|ABC-F-family-ATP-binding-cassette-domain-containing-protein
MTSGPPSPALPAGPAAHLRGEHLTVSLGGHRVLTDATVRINAGSRLGIVGENGRGKTTLLHVLTGRITPDVGRVTRAGTLAFVPQALRARADGRSRTVGDLVRDALTGPHAALEALDAAAAALAEAPDDAGAGHRYSTALERAHLYDAWDAGRRVDMDLEGLHACTDREHPLTSLSVGQRHRVRLAVTLGSRPDLLLLDEPTNHLDDVALDFLTRRLVEHPGGVAVVSHDRALLRAVCTDIVDLDPSQDGRPRRYSGGYAGWAKGRRRARAAWEQEYAEQNAERERLELAVEDAREQMQGSWRPPKGTGKHQRSSRSAGIVQMFNRRFDELEAHRITVPEPPLRLDWPFADMPDGDPRDGADAAAGTAGGPGTAGDDVLLTADAVRVAGRLEQPMGAALVPGGRVLVTGPNGAGKSTLLRVLAGDLEPTSGLVTVGADVRVRLVAQETPAWDEERTAAAVFEEHVRRVGADEAGVDDLGRPLPAPTLPSLGLLTAEAADTPVGRLSQGQQARLHLAMVLIERPHVLLLDEPTNHLSPALVDEMTEALQVTEQAVVVVTHDRQMLADLADWPRVELRTDAAAV
>NZ_CP025616.2|WP_119217672.1|516923_517628_-|hypothetical-protein
MMTLMWGAVAASSLLVGAVLATLRRWHMGTIGLVLAFGAGALIASVSFELAEAGVQAAGPAAVGIGLTLGAAAYFLGDRAVERSAARSGGSSSGAALTVGALLDGIPEQIVLGIGLAAGEGVSLALLVAIFMSNLPESIAATADSLDGGKTRRHLLIQWSLVTVVCALATWGGGLIADVASPALTGGIQGFAAGALLVMLIDTMIPEAREKGGERAGLLTVVGFALGAFLSLVV
>NZ_CP025616.2|WP_119217957.1|517679_518867_-|tryptophan-synthase-subunit-beta
MFGQYGGAHLPPQLAGPMAEVARAYAEARQDPEFYAEYRRLLRDAVGRPSPLTPLDRLSDELGGARIVLKREDLNHTGAHKINHTIGEALLAKRMGKRSLIAETGAGQHGVALATAAAMVGLDCEIHMGAIDVAKQHPNVVRMRLLGTKVVSVEREGRSLKEAVDSAFEVYAANPEKYLFAIGSVVGPHPFPTMIRDFQSVVGREARAQFQERFGALPSAVVAAVGGGSNAMGAFTAFLDDADVALVGVEPGGRSATKGEHAMTMTQGREGVLHGMATLVLADDDGTPDPVHSIASGLDYPGVGPQHAHFARVGRVRYVAEDDAAVLDAFQRLTRLEGVIPALESAHAVAHAIRLAPQMGRDERILVNLSGRGDKDVDYVAEKLGLTGEADEVVR
>NZ_CP025616.2|WP_119217673.1|519228_519804_+|hypothetical-protein
MTITAVDTPSLTTEAAAVLAATPGMRYAEFLTAAPAVPGIVAVVAEESARAALGLTPAAGDVLAVDVADESLQCREVRAAFQSGRTGVSPLRQAFAALLAGELGLDVERTSPGAAGAGFALTPESEETLTAWMREHLTLRAWVSQDASALEGVAREVAADLAPALQPGALEAPVAQRVAAMRASARRSATL
>NZ_CP025616.2|WP_119217674.1|519894_520458_+|GNAT-family-N-acetyltransferase
MKHEIVLTRGDLTLRPLTPDDGPALRELVDAAMWAGNSAPLPVDGAAMSAHLAELSEREGTFAFAVEQGGELVGRTSLYDLVPGLRVEVGHTVYARRVWGTSVNPGCKLLLFGHAFEEWALERVALRCDHRNARSHAAIARLGATFEGTLRRFRPAADGTIADVDYFSVVREEWPAVRGGLDARLAA
>NZ_CP025616.2|WP_119217675.1|520475_521507_+|hypothetical-protein
MPPEPSAPSGERGPARPRPADVAARPDAPSPRAAALLFALAVAAGSVMPLQGRINSRLAHLTGDPVLAALCSFAVGLVVMVLVSVLTPRGRRGLARIRPALAAGSVRPWYAVAGVIGGLLVLTQSATIGPLGVAVFTVAVVTGQVVGGMVVDRLGLSPAGVQRLTPRRLTGAALALAAVALVVWPSLGEVGGGPGWALLALLPLLAGLATAGQQVFNARQTTAYGTAIPATLVNFTAGVLFLGIVWGGIALASGHGLPALPHDWRLYLGGPLGCVFIGVGAMVVPRLGVFAATLGLVSGNLLGSLVVDLVAPTDGSVVTTTTVLGTLGALAAVTLASWPARRR
>NZ_CP025616.2|WP_119217676.1|521546_522782_-|MFS-transporter
MQIAEQERIASPTFVLAWMVSFLQFLAFYALVTTMAVYAVRQFAASDAGAGLASSAFVIGATLSRVVTGHVVDRFGKRRVLVVALVAVALSCTLYLVASSLPALVAVRMLHGASYAFASTAVMALAQAAIPDGRRAEATGHLALGTTLATAIGPALGLFLAGSIGYAWLFRATLGITVVSLVLGLLVREAPAAADVDGERAAGEAPLEHPAPAVGFRLRSVLHPAVLPISGFMLLVGLSYAGILTYLNAYSVERGLTAGAGLFFLAYAAAMLVMRLTLGTLQDRRGDDAVVYPALLCFTAALLVLAFATRDGHVVLAGALSGLGYGTLMPAAQAIAVNAVPSHQLGAGISTLMLFADVGLGLGPVLLGGLVASAGYGAMYAALAGVLVIAAGYYFVMHGRRHGRRGTVARA
>NZ_CP025616.2|WP_082067597.1|522806_523316_+|winged-helix-turn-helix-transcriptional-regulator
MMQSSEGAWPDPVEGIMYEHMLLLRVATQGVAPYGRSSALERSATVLLARLDAGGAMSVGELAEAFDLDVSTVHRQVAAAMKAGLVERVADPDGGSARLHRPTEEGRARLAAELSSRADNVAQIVASWPAEDVVEFSRLLRRFNEGAEERRGHPWPRPQTGPGAEDPRP
>NZ_CP025616.2|WP_041104135.1|523331_524150_-|spermidine-synthase
MPAQPSPSGRTVHLSTSGVDARIAPDEFGGFVLEIGGAVQSHVDLADPARIRYEYLRRMAHVLDGVAPAGAPVRVLHLGAGALTLPRYLQATRPGSEQTVVDLDRELVSFVLAELPLPAGTDLVSVVADARLAAVDLAMDGERFDAVVLDIGTGEEGAEHLRGAVFYGELLELLTAGGVLLVNIGDDAGLRFLGAELGALEKAAAEAGVPGPWTLADQGMLERLDWGNVVLAAGAPLGEAGCTERLAAAGPHPAAVLDPAESAALAARIRRA
>NZ_CP025616.2|WP_119217677.1|524185_524440_+|NrdH-redoxin
MSQNDLTVYGADWCRDCLRTKRQLDELGVAYDYVDLVADPAQADAAERISGRKNIPVVVFPDGDHQVEPTNEETAAKLTALGLI
>NZ_CP025616.2|WP_051995337.1|524511_524991_+|hypothetical-protein
MEHIDETALPAPEDRVVSATRHVDAPAGVVFELIADPARQPEWDGNDNLAEAAPGQRVTAVGDVFVMTLQKGVDRANHVVEFEEGRRIAWKPSEVGGEPFGQLWRWEVDGDDDGGCRVTHTYDWTRLADPKRIQKALRTGEEQLRASIDRLAELAERQG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP025616_1	1.18\|515581\|35\|NZ_CP025616\|PILER-CR,CRISPRCasFinder,CRT	515581-515615	35	NC_013855	Azospirillum sp. B510 plasmid pAB510a, complete sequence	1092884-1092918	6	0.829
NZ_CP025616_1	1.18\|515581\|35\|NZ_CP025616\|PILER-CR,CRISPRCasFinder,CRT	515581-515615	35	NZ_CP054621	Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence	296891-296925	6	0.829
NZ_CP025616_1	1.19\|515652\|34\|NZ_CP025616\|PILER-CR,CRISPRCasFinder,CRT	515652-515685	34	NZ_CP023976	Streptomyces alboflavus strain MDJK44 plasmid pMDJK44.1, complete sequence	57007-57040	8	0.765
NZ_CP025616_1	1.27\|516225\|36\|NZ_CP025616\|PILER-CR,CRISPRCasFinder,CRT	516225-516260	36	NZ_CP024423	Paracoccus yeei strain TT13 plasmid pTT13-1, complete sequence	191529-191564	8	0.778
NZ_CP025616_1	1.21\|515792\|35\|NZ_CP025616\|PILER-CR,CRISPRCasFinder,CRT	515792-515826	35	NZ_CP029834	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed4, complete sequence	321127-321161	9	0.743
NZ_CP025616_1	1.19\|515652\|34\|NZ_CP025616\|PILER-CR,CRISPRCasFinder,CRT	515652-515685	34	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	220046-220079	10	0.706
NZ_CP025616_1	1.19\|515652\|34\|NZ_CP025616\|PILER-CR,CRISPRCasFinder,CRT	515652-515685	34	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	1593213-1593246	10	0.706
NZ_CP025616_1	1.19\|515652\|34\|NZ_CP025616\|PILER-CR,CRISPRCasFinder,CRT	515652-515685	34	MT114163	Mycobacterium phage Settecandela, complete genome	99759-99792	10	0.706
NZ_CP025616_1	1.19\|515652\|34\|NZ_CP025616\|PILER-CR,CRISPRCasFinder,CRT	515652-515685	34	MK937592	Mycobacterium phage Phrappuccino, complete genome	99759-99792	10	0.706
NZ_CP025616_1	1.24\|516009\|37\|NZ_CP025616\|PILER-CR,CRISPRCasFinder,CRT	516009-516045	37	NZ_LR134451	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 9, complete sequence	350740-350776	10	0.73
NZ_CP025616_1	1.24\|516009\|37\|NZ_CP025616\|PILER-CR,CRISPRCasFinder,CRT	516009-516045	37	NZ_CP007794	Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence	725842-725878	10	0.73
NZ_CP025616_1	1.24\|516009\|37\|NZ_CP025616\|PILER-CR,CRISPRCasFinder,CRT	516009-516045	37	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	399336-399372	10	0.73
NZ_CP025616_1	1.24\|516009\|37\|NZ_CP025616\|PILER-CR,CRISPRCasFinder,CRT	516009-516045	37	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	343902-343938	10	0.73
NZ_CP025616_1	1.24\|516009\|37\|NZ_CP025616\|PILER-CR,CRISPRCasFinder,CRT	516009-516045	37	NZ_CP024425	Paracoccus yeei strain TT13 plasmid pTT13-3, complete sequence	94370-94406	10	0.73
NZ_CP025616_1	1.24\|516009\|37\|NZ_CP025616\|PILER-CR,CRISPRCasFinder,CRT	516009-516045	37	NZ_CP051544	Paracoccus sanguinis strain OM2164 plasmid pPspOM44, complete sequence	1985-2021	10	0.73
NZ_CP025616_1	1.27\|516225\|36\|NZ_CP025616\|PILER-CR,CRISPRCasFinder,CRT	516225-516260	36	NZ_LR134460	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 18, complete sequence	103733-103768	10	0.722
NZ_CP025616_1	1.1\|514352\|34\|NZ_CP025616\|PILER-CR,CRISPRCasFinder,CRT	514352-514385	34	MN284905	Mycobacterium phage AbbysRanger, complete genome	13616-13649	11	0.676
NZ_CP025616_1	1.1\|514352\|34\|NZ_CP025616\|PILER-CR,CRISPRCasFinder,CRT	514352-514385	34	KX579975	Mycobacterium phage Mundrea, complete genome	13564-13597	11	0.676
NZ_CP025616_1	1.24\|516009\|37\|NZ_CP025616\|PILER-CR,CRISPRCasFinder,CRT	516009-516045	37	NC_011143	Phenylobacterium zucineum HLK1 plasmid, complete sequence	77074-77110	11	0.703

1. spacer 1.18|515581|35|NZ_CP025616|PILER-CR,CRISPRCasFinder,CRT matches to NC_013855 (Azospirillum sp. B510 plasmid pAB510a, complete sequence) position: , mismatch: 6, identity: 0.829

gggctggccatgccgaacacggacgcggcgctgct	CRISPR spacer
gggctggccatgccgaacaccgacggggtgacgcc	Protospacer
******************** **** **.* .**.

2. spacer 1.18|515581|35|NZ_CP025616|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 6, identity: 0.829

gggctggccatgccgaacacggacgcggcgctgct	CRISPR spacer
gggctggccatgccgaacaccgacggggtgacgcc	Protospacer
******************** **** **.* .**.

3. spacer 1.19|515652|34|NZ_CP025616|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023976 (Streptomyces alboflavus strain MDJK44 plasmid pMDJK44.1, complete sequence) position: , mismatch: 8, identity: 0.765

gacaagggcacccgcgactgggtgcgcatgatcg	CRISPR spacer
gccaagggcacccgcggctgggtccgcggcgacg	Protospacer
* **************.****** ***.  . **

4. spacer 1.27|516225|36|NZ_CP025616|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024423 (Paracoccus yeei strain TT13 plasmid pTT13-1, complete sequence) position: , mismatch: 8, identity: 0.778

cgctacctggccggcatgctgcgcgaggccgtgctc	CRISPR spacer
ttcgacctggcccgcacgctgcgcgaggccggcatc	Protospacer
. * ******** ***.**************   **

5. spacer 1.21|515792|35|NZ_CP025616|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029834 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.743

gtggacgctgcgacggcgaacgtcgccggcgaggg	CRISPR spacer
ggcgacgctgagacggcggacgtcgccgggttcga	Protospacer
*  ******* *******.**********    *.

6. spacer 1.19|515652|34|NZ_CP025616|PILER-CR,CRISPRCasFinder,CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 10, identity: 0.706

gacaagggcacccgcgactgggtgcgcatgatcg	CRISPR spacer
gacaagggcgcccgcgcctgggtgctctccgcgc	Protospacer
*********.****** ******** * . ..

7. spacer 1.19|515652|34|NZ_CP025616|PILER-CR,CRISPRCasFinder,CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 10, identity: 0.706

gacaagggcacccgcgactgggtgcgcatgatcg	CRISPR spacer
gacaagggcgcccgcgcctgggtgctctccgcgc	Protospacer
*********.****** ******** * . ..

8. spacer 1.19|515652|34|NZ_CP025616|PILER-CR,CRISPRCasFinder,CRT matches to MT114163 (Mycobacterium phage Settecandela, complete genome) position: , mismatch: 10, identity: 0.706

gacaagggcacccgcgactgggtgcgcatgatcg	CRISPR spacer
agcaagggcacccgcgactgcatgcgccgcgcca	Protospacer
..****************** .*****   ..*.

9. spacer 1.19|515652|34|NZ_CP025616|PILER-CR,CRISPRCasFinder,CRT matches to MK937592 (Mycobacterium phage Phrappuccino, complete genome) position: , mismatch: 10, identity: 0.706

gacaagggcacccgcgactgggtgcgcatgatcg	CRISPR spacer
agcaagggcacccgcgactgcatgcgccgcgcca	Protospacer
..****************** .*****   ..*.

10. spacer 1.24|516009|37|NZ_CP025616|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134451 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 9, complete sequence) position: , mismatch: 10, identity: 0.73

ctcgaggcgggccgcatcctcggcgaggacgtggata	CRISPR spacer
gacgaggcgggccgcctcctcggcgaggagcgccgca	Protospacer
  ************* *************     ..*

11. spacer 1.24|516009|37|NZ_CP025616|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 10, identity: 0.73

ctcgaggcgggccgcatcctcggcgaggacgtggata	CRISPR spacer
gccgaggcgcgccgcatcctcgacgaggaccattacg	Protospacer
 .******* ************.*******    *..

12. spacer 1.24|516009|37|NZ_CP025616|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 10, identity: 0.73

ctcgaggcgggccgcatcctcggcgaggacgtggata	CRISPR spacer
gccgaggcgagccgcatcctcgacgaggaccattacg	Protospacer
 .*******.************.*******    *..

13. spacer 1.24|516009|37|NZ_CP025616|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 10, identity: 0.73

ctcgaggcgggccgcatcctcggcgaggacgtggata	CRISPR spacer
gccgaggcgcgccgcatcctcgacgaggaccattacg	Protospacer
 .******* ************.*******    *..

14. spacer 1.24|516009|37|NZ_CP025616|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024425 (Paracoccus yeei strain TT13 plasmid pTT13-3, complete sequence) position: , mismatch: 10, identity: 0.73

ctcgaggc-----gggccgcatcctcggcgaggacgtggata	CRISPR spacer
-----ggccgcaagggccgcatcctgcgcgaggacgtggccg	Protospacer
     ***     ************  ************ ..

15. spacer 1.24|516009|37|NZ_CP025616|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP051544 (Paracoccus sanguinis strain OM2164 plasmid pPspOM44, complete sequence) position: , mismatch: 10, identity: 0.73

ctcgaggc-----gggccgcatcctcggcgaggacgtggata	CRISPR spacer
-----ggccgcaagggccgcatcctgcgcgaggacgtggccg	Protospacer
     ***     ************  ************ ..

16. spacer 1.27|516225|36|NZ_CP025616|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134460 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 18, complete sequence) position: , mismatch: 10, identity: 0.722

cgctacctggccggcatgctgcgcgaggccgtgctc	CRISPR spacer
gaacgcctggccggcctgcagcgcgaggccggcgtc	Protospacer
 . ..********** *** ***********   **

17. spacer 1.1|514352|34|NZ_CP025616|PILER-CR,CRISPRCasFinder,CRT matches to MN284905 (Mycobacterium phage AbbysRanger, complete genome) position: , mismatch: 11, identity: 0.676

ttccggctcaacctcatcgtcgcctaccagaact	CRISPR spacer
cgcaggctcaaccacatcgtcgcccacctcgcgg	Protospacer
. * ********* **********.***  .

18. spacer 1.1|514352|34|NZ_CP025616|PILER-CR,CRISPRCasFinder,CRT matches to KX579975 (Mycobacterium phage Mundrea, complete genome) position: , mismatch: 11, identity: 0.676

ttccggctcaacctcatcgtcgcctaccagaact	CRISPR spacer
cgcaggctcaaccacatcgtcgcccacctcgcgg	Protospacer
. * ********* **********.***  .

19. spacer 1.24|516009|37|NZ_CP025616|PILER-CR,CRISPRCasFinder,CRT matches to NC_011143 (Phenylobacterium zucineum HLK1 plasmid, complete sequence) position: , mismatch: 11, identity: 0.703

ctcgaggcgggccgcatcctcggcgaggacgtggata	CRISPR spacer
gccgaggcgcgccgcatcctcgacgaggaccacttcg	Protospacer
 .******* ************.*******     ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

787524 : 828650

Leptospira_phage(25.0%)

integrase,transposase

attL 819180:819195|attR 823626:823641

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_036383560.1\|787524_788535_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_113914326.1\|788545_789391_+	CoA ester lyase	NA	NA	NA	NA
WP_036339675.1\|789442_789928_+	membrane protein	NA	NA	NA	NA
WP_036313496.1\|790043_790988_+	pyridoxal 5'-phosphate synthase lyase subunit PdxS	NA	NA	NA	NA
WP_073117018.1\|791008_791617_+	pyridoxal 5'-phosphate synthase glutaminase subunit PdxT	NA	NA	NA	NA
WP_119217774.1\|791653_792796_-	alanine dehydrogenase	NA	NA	NA	NA
WP_036339666.1\|792901_793399_+	DUF456 domain-containing protein	NA	NA	NA	NA
WP_036313468.1\|793454_794183_-	FadR family transcriptional regulator	NA	NA	NA	NA
WP_119217775.1\|794262_795924_-	L-lactate permease	NA	NA	NA	NA
WP_119217776.1\|796984_798625_+	iron-sulfur cluster-binding protein	NA	NA	NA	NA
WP_044658796.1\|798621_799317_+	lactate utilization protein C	NA	NA	NA	NA
WP_020624127.1\|799349_799559_-	hypothetical protein	NA	NA	NA	NA
WP_070708893.1\|799742_801440_-	sodium:solute symporter family protein	NA	NA	NA	NA
WP_060974163.1\|801792_802203_+	hypothetical protein	NA	NA	NA	NA
WP_041102629.1\|802555_803683_+	glycosyltransferase	NA	NA	NA	NA
WP_102708691.1\|803682_804771_+	glycosyl transferase	NA	NA	NA	NA
WP_102708692.1\|804799_806806_-	glycosyltransferase	NA	NA	NA	NA
WP_119217777.1\|808072_809458_+	glycosyltransferase	NA	NA	NA	NA
WP_119217778.1\|809636_810590_+	hypothetical protein	NA	NA	NA	NA
WP_119217779.1\|810702_811884_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_119217780.1\|812054_812816_-	OBAP family protein	NA	NA	NA	NA
WP_020624892.1\|813152_813428_+	DUF1540 domain-containing protein	NA	NA	NA	NA
WP_119217781.1\|813437_814265_-	hypothetical protein	NA	NA	NA	NA
WP_119217782.1\|814425_815286_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_119217783.1\|815466_816601_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	6.5e-38	37.2
WP_119217784.1\|816687_817698_+	nucleotidyltransferase	NA	NA	NA	NA
WP_119217785.1\|817694_819161_+	hypothetical protein	NA	NA	NA	NA
WP_119217786.1\|819157_820930_+	SAVED domain-containing protein	NA	NA	NA	NA
819180:819195	attL	NA	NA	NA	NA
WP_119217787.1\|820998_821361_-\|integrase	site-specific integrase	A0A222ZES9	Arthrobacter_phage	2.6e-09	33.0
WP_095694973.1\|822817_824071_-\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	2.4e-81	43.5
823626:823641	attR	NA	NA	NA	NA
WP_060774479.1\|824162_825506_+\|transposase	IS256-like element ISMlu11 family transposase	A0A218MNI5	uncultured_virus	1.4e-36	38.1
WP_119217788.1\|826700_827018_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_031943827.1\|827126_828650_+\|transposase	IS21 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

2211218 : 2344913

115

Paenibacillus_phage(17.39%)

integrase,transposase,holin,tRNA,protease

attL 2277808:2277867|attR 2331259:2332612

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_044658601.1\|2211218_2212223_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_044658602.1\|2212200_2213043_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_041104239.1\|2213039_2214017_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA
WP_036314984.1\|2214016_2214448_-	hypothetical protein	NA	NA	NA	NA
WP_002855305.1\|2214459_2214828_-	hypothetical protein	NA	NA	NA	NA
WP_078026112.1\|2214824_2215790_-\|tRNA	tRNA pseudouridine(55) synthase TruB	NA	NA	NA	NA
WP_036314977.1\|2215803_2216256_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA
WP_119217434.1\|2216336_2219138_-	translation initiation factor IF-2	E3T4N3	Cafeteria_roenbergensis_virus	2.3e-20	29.5
WP_036334361.1\|2219329_2219671_-	YlxR family protein	NA	NA	NA	NA
WP_036314069.1\|2219713_2220700_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA
WP_036314068.1\|2220701_2221289_-	ribosome maturation factor	NA	NA	NA	NA
WP_102708372.1\|2221419_2222313_-	TSUP family transporter	NA	NA	NA	NA
WP_102708373.1\|2222212_2224039_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_119217927.1\|2224160_2225093_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_036382599.1\|2225067_2226219_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA
WP_073116932.1\|2226357_2227725_-\|protease	site-2 protease family protein	NA	NA	NA	NA
WP_119217435.1\|2227721_2228987_-	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_119217436.1\|2229092_2230715_-	cation acetate symporter	NA	NA	NA	NA
WP_041104222.1\|2230711_2231086_-	DUF485 domain-containing protein	NA	NA	NA	NA
WP_119217437.1\|2231288_2232167_-	CoA ester lyase	NA	NA	NA	NA
WP_010079143.1\|2232163_2232694_-	MaoC family dehydratase	NA	NA	NA	NA
WP_119217438.1\|2232695_2233883_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_119217439.1\|2233898_2236037_-	acetyl/propionyl-CoA carboxylase subunit alpha	NA	NA	NA	NA
WP_119217440.1\|2237773_2238421_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_081374417.1\|2238462_2238999_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_119217441.1\|2239104_2240544_-	2-oxo acid dehydrogenase subunit E2	NA	NA	NA	NA
WP_069941736.1\|2240540_2241608_-	alpha-ketoacid dehydrogenase subunit beta	NA	NA	NA	NA
WP_041105099.1\|2241604_2242759_-	pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	NA	NA	NA	NA
WP_036314046.1\|2242915_2243515_-	DivIVA domain-containing protein	NA	NA	NA	NA
WP_119217442.1\|2243564_2244401_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_036314042.1\|2244426_2244984_-	ribosome recycling factor	NA	NA	NA	NA
WP_002857706.1\|2245037_2245805_-	UMP kinase	NA	NA	NA	NA
WP_010079157.1\|2246013_2246850_-	elongation factor Ts	NA	NA	NA	NA
WP_061866738.1\|2246953_2247820_-	30S ribosomal protein S2	NA	NA	NA	NA
WP_095353907.1\|2248323_2248899_+	M23 family metallopeptidase	NA	NA	NA	NA
WP_070708481.1\|2248834_2250031_-	glycosyltransferase	NA	NA	NA	NA
WP_041105089.1\|2250343_2251222_+	peptidoglycan endopeptidase	C1KFN7	Lactobacillus_virus	3.9e-14	39.0
WP_119217443.1\|2251402_2252623_-	glycosyltransferase	NA	NA	NA	NA
WP_020624488.1\|2252749_2253391_-	phosphatidylglycerophosphate synthase	NA	NA	NA	NA
WP_119217928.1\|2253544_2254474_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_020624486.1\|2254598_2255432_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	8.9e-61	45.4
WP_020624485.1\|2255512_2256583_-	nucleoside hydrolase	NA	NA	NA	NA
WP_036314031.1\|2256579_2257518_-	SDR family oxidoreductase	A0A2N9QUX2	Trichoplusia_ni_ascovirus	4.8e-63	48.8
WP_080695854.1\|2257631_2258777_-	glutaminase A	NA	NA	NA	NA
WP_080695855.1\|2258889_2259651_+	DUF72 domain-containing protein	NA	NA	NA	NA
WP_036314027.1\|2259738_2260584_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_060974119.1\|2262460_2264026_-	multicopper oxidase family protein	NA	NA	NA	NA
WP_119217444.1\|2264342_2265236_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	6.5e-17	44.0
WP_036340675.1\|2265578_2266445_-	hypothetical protein	NA	NA	NA	NA
WP_060974075.1\|2266602_2267328_+	response regulator transcription factor	NA	NA	NA	NA
WP_060974076.1\|2267324_2268494_+	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	1.6e-23	28.9
WP_060775536.1\|2268565_2268895_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA
WP_119217445.1\|2268970_2271208_+	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	2.3e-63	31.2
WP_060974078.1\|2271267_2271942_+	DUF305 domain-containing protein	NA	NA	NA	NA
WP_002854314.1\|2272030_2273086_+	type II glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_081097759.1\|2273192_2273450_-	fructose-bisphosphate aldolase	NA	NA	NA	NA
WP_119217446.1\|2273456_2274351_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	6.5e-17	44.0
WP_044659891.1\|2275114_2275525_-	four-helix bundle copper-binding protein	NA	NA	NA	NA
WP_119217929.1\|2276184_2277387_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	1.6e-31	33.8
WP_148244949.1\|2277370_2277685_+\|transposase	transposase	NA	NA	NA	NA
2277808:2277867	attL	NA	NA	NA	NA
WP_119217930.1\|2277890_2279040_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.7e-38	37.2
WP_081097732.1\|2279658_2281767_+	acyltransferase	A0A1R3Y5Q6	Salmonella_virus	1.7e-28	29.1
WP_081097721.1\|2282733_2283384_-	AAA family ATPase	NA	NA	NA	NA
WP_119217448.1\|2283376_2283766_-	hypothetical protein	NA	NA	NA	NA
WP_119217444.1\|2283764_2284658_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	6.5e-17	44.0
WP_119217449.1\|2284644_2286087_-	ATP-binding protein	NA	NA	NA	NA
WP_010078636.1\|2286414_2287200_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	1.1e-23	32.1
WP_060973479.1\|2288950_2289517_-	recombinase family protein	G8I4U3	Mycobacterium_phage	3.6e-21	37.6
WP_060973480.1\|2291279_2291849_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_127435415.1\|2293054_2293423_-	hypothetical protein	NA	NA	NA	NA
WP_127435416.1\|2295172_2295601_-	hypothetical protein	NA	NA	NA	NA
WP_119217450.1\|2297441_2298737_+\|transposase	IS256-like element ISMlu11 family transposase	A0A218MNI5	uncultured_virus	1.4e-36	38.1
WP_119217932.1\|2298943_2300146_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	1.6e-31	33.8
WP_119217451.1\|2300351_2301038_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	Q8W6R2	Burkholderia_virus	5.3e-11	40.0
WP_049147586.1\|2301654_2302155_-	signal peptidase	NA	NA	NA	NA
WP_049147584.1\|2302308_2304306_-	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	3.4e-90	35.9
WP_060775722.1\|2304260_2304623_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_036313837.1\|2304775_2305525_+	cytochrome C biogenesis protein CcdA	NA	NA	NA	NA
WP_081097719.1\|2305567_2306293_+	thioredoxin domain-containing protein	NA	NA	NA	NA
WP_049147602.1\|2306461_2307013_+	vitamin K epoxide reductase family protein	NA	NA	NA	NA
WP_036313828.1\|2307067_2307445_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_036313825.1\|2307475_2308384_+	cation transporter	NA	NA	NA	NA
WP_036313821.1\|2308589_2309207_-	recombinase family protein	E5FFF9	Burkholderia_phage	3.9e-37	49.2
WP_080981719.1\|2309331_2310498_-	TniQ family protein	NA	NA	NA	NA
WP_060973728.1\|2310494_2311412_-	AAA family ATPase	NA	NA	NA	NA
WP_017488126.1\|2313320_2313680_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_036341590.1\|2313676_2314279_+	cadmium transporter	NA	NA	NA	NA
WP_049147382.1\|2314608_2315490_-	hypothetical protein	NA	NA	NA	NA
WP_049147384.1\|2315816_2316065_+	HTH domain-containing protein	NA	NA	NA	NA
WP_102708791.1\|2316249_2317143_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	8.5e-17	44.0
WP_060974313.1\|2317140_2318136_-\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_127435035.1\|2318344_2318755_+	hypothetical protein	NA	NA	NA	NA
WP_127435036.1\|2319810_2320113_+	hypothetical protein	NA	NA	NA	NA
WP_049145134.1\|2320264_2320642_-	hypothetical protein	NA	NA	NA	NA
WP_049145136.1\|2320638_2321487_-	hypothetical protein	NA	NA	NA	NA
WP_049145137.1\|2321755_2322136_-	hypothetical protein	NA	NA	NA	NA
WP_049145140.1\|2322140_2324045_-	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_049145144.1\|2324044_2325547_-	conjugal transfer protein TraC	NA	NA	NA	NA
WP_060973428.1\|2325546_2327136_-	PrgI family protein	NA	NA	NA	NA
WP_060973427.1\|2327135_2328176_-	hypothetical protein	NA	NA	NA	NA
WP_060774791.1\|2328208_2328514_-	hypothetical protein	NA	NA	NA	NA
WP_060973426.1\|2328697_2329360_-	hypothetical protein	NA	NA	NA	NA
WP_036340685.1\|2329446_2329743_-	hypothetical protein	NA	NA	NA	NA
WP_036340707.1\|2329739_2330588_-	DNA-directed RNA polymerase sigma-70 factor	NA	NA	NA	NA
WP_119217930.1\|2331341_2332491_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.7e-38	37.2
WP_044659678.1\|2332997_2334131_-	DUF2637 domain-containing protein	NA	NA	NA	NA
2331259:2332612	attR	NA	NA	NA	NA
WP_060974142.1\|2334127_2334943_-	hypothetical protein	NA	NA	NA	NA
WP_060974140.1\|2334978_2335206_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_081097766.1\|2335316_2335631_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_081097765.1\|2335861_2336533_+	PepSY domain-containing protein	NA	NA	NA	NA
WP_113914074.1\|2336614_2338525_-	DNA primase	A0A1S5RH70	Helicobacter_phage	1.2e-41	33.5
WP_069942019.1\|2338555_2338801_-	hypothetical protein	NA	NA	NA	NA
WP_119217452.1\|2341374_2342277_+	NAD-dependent deacylase	A0A220NU33	Escherichia_phage	1.1e-16	33.5
WP_036317450.1\|2342203_2343610_-	deoxyguanosinetriphosphate triphosphohydrolase	NA	NA	NA	NA
WP_119217453.1\|2343602_2344913_-\|tRNA	tRNA dihydrouridine synthase DusB	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP025617

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP025616

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection