CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP028826	Pseudomonas fluorescens strain MS82 chromosome, complete genome	3 crisprs	csa3,DinG,cas3,DEDDh,WYL,PD-DExK	0	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP028826_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028826_1

302069-302181

Orphan

Consensus_repeat	Method
TTTGATAGTTCCCACGCTCTGCGTGGGAAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP028826_1

>merge|NZ_CP028826|1|302069-302181|CRISPRCasFinder
TTTGATAGTTCCCACGCTCTGCGTGGGAATTCAGCTTGTGACGCTCCGCGTCACTGGGACGCAGAGCGTCCCTTGAGGCTTTTTTTGATCGTTCCCACGCTCTGCGTGGGAAT

>NZ_CP028826|1|1|302069-302181|CRISPRCasFinder
TTTGATAGTTCCCACGCTCTGCGTGGGAAT	TCAGCTTGTGACGCTCCGCGTCACTGGGACGCAGAGCGTCCCTTGAGGCTTTT
TTTGATCGTTCCCACGCTCTGCGTGGGAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028826.1\|WP_011331968.1\|313180_314083_+\|Hsp33-family-molecular-chaperone-HslO	unknown	unknown	gnl\|CDD\|234643
NZ_CP028826.1\|WP_108559097.1\|310902_311682_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NZ_CP028826.1\|WP_108559091.1\|302284_303868_-\|glutamate--cysteine-ligase	unknown	unknown	gnl\|CDD\|235001
NZ_CP028826.1\|WP_108559081.1\|292423_293461_-\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380489
NZ_CP028826.1\|WP_007952691.1\|308106_309420_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|236531
NZ_CP028826.1\|WP_108559085.1\|295894_297214_+\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274819
NZ_CP028826.1\|WP_011331956.1\|297253_298291_+\|L-glyceraldehyde-3-phosphate-reductase	unknown	unknown	gnl\|CDD\|381376
NZ_CP028826.1\|WP_064382739.1\|299322_300162_-\|taurine-ABC-transporter-permease-TauC	unknown	unknown	gnl\|CDD\|182276
NZ_CP028826.1\|WP_108559095.1\|307251_307992_+\|two-component-system-response-regulator-OmpR	unknown	unknown	gnl\|CDD\|181883
NZ_CP028826.1\|WP_011331959.1\|300158_300953_-\|taurine-ABC-transporter-ATP-binding-subunit	unknown	unknown	gnl\|CDD\|183056
NZ_CP028826.1\|WP_011331966.1\|311798_312206_+\|RNA-binding-protein-S4	unknown	unknown	gnl\|CDD\|224109
NZ_CP028826.1\|WP_108559098.1\|312275_313076_-\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|214471
NZ_CP028826.1\|WP_108559089.1\|300969_301947_-\|taurine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|226904
NZ_CP028826.1\|WP_011331964.1\|310406_310886_-\|ATP-dependent-zinc-protease	unknown	unknown	gnl\|CDD\|226553
NZ_CP028826.1\|WP_007949201.1\|309504_310410_-\|30S-ribosomal-protein-S6--L-glutamate-ligase	unknown	unknown	gnl\|CDD\|182468
NZ_CP028826.1\|WP_108559079.1\|292121_292394_+\|HicB-family-protein	unknown	unknown	gnl\|CDD\|374224
NZ_CP028826.1\|WP_007952727.1\|291607_291868_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028826.1\|WP_108559083.1\|293667_295893_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP028826.1\|WP_108559093.1\|304567_306892_-\|RNA-binding-transcriptional-accessory-protein	unknown	unknown	gnl\|CDD\|225094
NZ_CP028826.1\|WP_108559087.1\|298422_299265_-\|taurine-dioxygenase	unknown	unknown	gnl\|CDD\|181947

Protein	Function_ID	Function_description	E-value
NZ_CP028826.1\|WP_011331968.1\|313180_314083_+\|Hsp33-family-molecular-chaperone-HslO	gnl\|CDD\|234643	PRK00114, hslO, Hsp33 family molecular chaperone HslO.	7.08497e-124
NZ_CP028826.1\|WP_011331966.1\|311798_312206_+\|RNA-binding-protein-S4	gnl\|CDD\|224109	COG1188, COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis].	9.55448e-35
NZ_CP028826.1\|WP_108559091.1\|302284_303868_-\|glutamate--cysteine-ligase	gnl\|CDD\|235001	PRK02107, PRK02107, glutamate--cysteine ligase; Provisional.	0
NZ_CP028826.1\|WP_108559081.1\|292423_293461_-\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380489	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type 1 periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type 1 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding, which in turn changes the DNA binding affinity of the repressor.	1.99416e-104
NZ_CP028826.1\|WP_007952691.1\|308106_309420_+\|HAMP-domain-containing-protein	gnl\|CDD\|236531	PRK09467, envZ, osmolarity sensor protein; Provisional.	1.58351e-110
NZ_CP028826.1\|WP_108559085.1\|295894_297214_+\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274819	TIGR03860, FMN_nitrolo, FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family. This model represents a distinctive clade, in which all characterized members are FMN-binding, within the larger family of luciferase-like monooxygenases (LLM), among which there are both FMN- and F420-binding enzymes. A well-characterized member is nitrilotriacetate monooxygenase from Aminobacter aminovorans (Chelatobacter heintzii), where nitrilotriacetate is a chelating agent used in detergents. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP028826.1\|WP_011331956.1\|297253_298291_+\|L-glyceraldehyde-3-phosphate-reductase	gnl\|CDD\|381376	cd19150, AKR_AKR14A1, Escherichia coli L-glyceraldehyde 3-phosphate reductase (GPR/YghZ/AKR14A1) and similar proteins. Escherichia coli L-glyceraldehyde 3-phosphate reductase (GPR/YghZ), also called GAP reductase, is a founding member of aldo-keto reductase family 14 member A1 (AKR14A1). It catalyzes the stereospecific, NADPH-dependent reduction of L-glyceraldehyde 3-phosphate (L-GAP). It is also involved in the stress response as a methylglyoxal reductase which converts the toxic metabolite methylglyoxal to acetol in vitro and in vivo.	0
NZ_CP028826.1\|WP_064382739.1\|299322_300162_-\|taurine-ABC-transporter-permease-TauC	gnl\|CDD\|182276	PRK10160, PRK10160, taurine ABC transporter permease TauC.	9.42751e-114
NZ_CP028826.1\|WP_108559095.1\|307251_307992_+\|two-component-system-response-regulator-OmpR	gnl\|CDD\|181883	PRK09468, ompR, osmolarity response regulator; Provisional.	6.30649e-166
NZ_CP028826.1\|WP_011331959.1\|300158_300953_-\|taurine-ABC-transporter-ATP-binding-subunit	gnl\|CDD\|183056	PRK11248, tauB, taurine ABC transporter ATP-binding subunit.	8.49473e-171
NZ_CP028826.1\|WP_108559098.1\|312275_313076_-\|phosphatase-PAP2-family-protein	gnl\|CDD\|214471	smart00014, acidPPc, Acid phosphatase homologues.	0.00116366
NZ_CP028826.1\|WP_108559089.1\|300969_301947_-\|taurine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|226904	COG4521, TauA, ABC-type taurine transport system, periplasmic component [Inorganic ion transport and metabolism].	5.12606e-154
NZ_CP028826.1\|WP_011331964.1\|310406_310886_-\|ATP-dependent-zinc-protease	gnl\|CDD\|226553	COG4067, COG4067, Uncharacterized protein conserved in archaea [Posttranslational modification, protein turnover, chaperones].	1.30231e-56
NZ_CP028826.1\|WP_007949201.1\|309504_310410_-\|30S-ribosomal-protein-S6--L-glutamate-ligase	gnl\|CDD\|182468	PRK10446, PRK10446, 30S ribosomal protein S6--L-glutamate ligase.	7.15337e-153
NZ_CP028826.1\|WP_108559093.1\|304567_306892_-\|RNA-binding-transcriptional-accessory-protein	gnl\|CDD\|225094	COG2183, Tex, Transcriptional accessory protein [Transcription].	0
NZ_CP028826.1\|WP_108559097.1\|310902_311682_-\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	6.42249e-67
NZ_CP028826.1\|WP_108559083.1\|293667_295893_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	4.97299e-66
NZ_CP028826.1\|WP_108559079.1\|292121_292394_+\|HicB-family-protein	gnl\|CDD\|374224	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system. This is a family of HicB-like antitoxins.	1.99176e-34
NZ_CP028826.1\|WP_108559087.1\|298422_299265_-\|taurine-dioxygenase	gnl\|CDD\|181947	PRK09553, tauD, taurine dioxygenase; Reviewed.	0

>NZ_CP028826.1|WP_108559089.1|300969_301947_-|taurine-ABC-transporter-substrate-binding-protein
MKLNFPLRLLAVASLAAASFLAQAADLTVAYQTTVDPAKVAQADGAYEKATKADINWRKFDNGADIIAAIASGDVQIGYLGSSPLTAAITRKVPVETFLIATQIGAAEALVARDGSGIKTPQDLVGKKIAVPFVSTGHYSLLAALKHWNIDPSKVTVINLAPPAIIAAWKRGDIDATYVWDPALGVAKENGKVLITSGELAKFGAPTFDAWIVRKDFAEKHPEIVTAFAKVTLDAYADYRKDPKAWLANQSNVDKLVKLSGAKASDIPLLLQGNVYPLAADQVSDLGAPTTKAITDTATFLKEQGKVEAVLPDYAPYVSAKYITN
>NZ_CP028826.1|WP_011331959.1|300158_300953_-|taurine-ABC-transporter-ATP-binding-subunit
MALLQLERISAQYPGSPEPVLSDISLTLGPQQLLVALGPSGSGKTSLLNLIAGFVEPSAGRITLDNVPVKGPSAERGVVFQDDALLPWQDVLANVAFGLELAGVAKDKREQRAREMLALVDLSGFEHRRIWQLSGGQKQRVGLARALAADPRVLLMDEPFGALDAFTREQMQELLLQVWQRTAKPVFLITHDIEEAVFLATDLILLAPNPGQIVERLHLDFGQRYAAGESARAIKSDPRFIETREHVLAKVFSQRSAVQRQERA
>NZ_CP028826.1|WP_064382739.1|299322_300162_-|taurine-ABC-transporter-permease-TauC
MSSYDVSATAVKPAATSVVIPVRRSLSTRWISLLTLFALLVIWWAVTATGLIEPLFLPPPSAVLQKGWLLATTGYMDSTLWQHLGASLSRIGLGLGFAILTAVPVGIAIGANRIARGVLDPLIEFYRPIPPLAYLPLIVIWCGIGELSKVLLIYLAIFAPIAIATATGVRTVDPAKLRAAQSLGATRAQLIRHVILPSALPDILTGVRIGLGVGWSTLVAAELIAATSGLGFMVQSAAQFLVTDVVVLGILVIALIAFAMEMGLRALQRKLVPWHGQAH
>NZ_CP028826.1|WP_108559087.1|298422_299265_-|taurine-dioxygenase
MSSLNITPLSSALGAQISGVDISQPLNQEQRDAIEQALLKYQVLFFRNQPIEPSQQARFAACFGDLHIHPIYPNVPEQPEVLILDTAVTDVRDNAIWHTDVTFLPTPAMGAVLSAKLLPEFGGDTLWASGIAAYEALSAPMKALLEGLTATHDFTRSFPLERYGNTPQALAQWEEARRKNPPLSHPVIRTHPVSGRRSLFVNEGFTSKINELSETESEAVLKFLFAHATRPEFTIRWRWQKDDIAFWDNRVTQHYAVDDYRPARRVMQRATVLGDVPFFR
>NZ_CP028826.1|WP_011331956.1|297253_298291_+|L-glyceraldehyde-3-phosphate-reductase
MTYTAAENRYDSIPYRRVGRSGLVLPALSLGLWHNFGDSTPIDTQRSLLRTAFDLGINHFDLANNYGPPYGSAEINFGRLLREDFKQYRDELIISSKAGWDMWPGPYGQGGGSRKYVLASLDQSLQRLGLDYVDIFYSHRFDPDTPLEETASALATAVQQGKALYIGISSYSGVKTREIAALLKEWKVPLLIHQPAYNLLNRWVEKDLLDTTDELGTGVIAFTPLAQGLLTDKYLNGVPADARVNRPGGGSLQASHLSEANIAHVRALNEIAKRRGQSLAQLALAWTLRDPRVTSALIGASRPEQIVENVGALKNLSFSAEELAEIDRFAQEGGINLWEKPSTAE
>NZ_CP028826.1|WP_108559085.1|295894_297214_+|LLM-class-flavin-dependent-oxidoreductase
MSRQLKLGAFLMATGHHVAAWRHPDVPANAGLDFAHYKRLAQIAEAAKFDTLFVADSVAAPTQDIASRMARSDHFEPLTLLSALSAVTEHIGLIATATTSYNEPYHVARKFASLDHLSGGRAGWNLVTSDNAAEAQNFGRDEHIGHAERYSRAREFHQVVTGLWDSWQDDAFLRDKASGAYYDPEKLHVLNHVGEHFRVKGPLNVARSPQGQPVIVQAGSSETGRELAAQTAEVVFTAQTSLASAQAFYADLKGRLPKYGRSADSLKIMPGVFVVVGQTEAKAQEKYETFQQLVEPEVGIALLGRMLGNFDLSKYPLDGPLPELPLTDSGQQSRQKLLTELAGREHLTLAELGRRIAGGRGHYSVVGTPAQIADRLQEWFEQGAADGFNVLVPHLPGGLEDFANGVVPELQRRGLFRTEYEGRTLRQNLGLARPGNRFA
>NZ_CP028826.1|WP_108559083.1|293667_295893_+|TonB-dependent-receptor
MHNIPGATHKLAQSIRAAGWLLTGLAALPLPSAFAADSTDQEPTLKSVTVTATRREESLQKVPVAVSVIDGEQLERDNRNSVASIVQQVPSLNFRTGASNKDTSLFVRGVGTISTSPGVEPTVATVIDGVVYARPGQSTLDLLDLERVEVLRGPQGTLFGKNASAGVLNITSKAPTAETHGYIDQSYYSGNESRTRFGIGGSLIPDTLKGSISTLFGTYDGNVDNQHNGQEVNGYNHRGVRGKLEFTPNDDITFTLIADYMQSHDDGPNGVVTKALTPAFANALSPVGATSHNRDINTDTRSHVEDTNKGLSGQLDWQLGDYTLTSITAWRGWDNTQYQDGDRLGTVTAAFPGTADKGDLAFDQYSQELRLASPKGEFLEYVGGLFYMHGKDEETYQRTLTTTTRTDRGVADYSTTSDSYAVFGESTLNFTSDFRGIAGLRYTHDDLEYDHRRVSTSATTVSGIQPATRSSGSVDEDGWSGRLGLQYDLSDTVTTYLTYSRGYKGPAYNVFFNMQPRDTEALKPETSNTWEAGIKASSWNNRLTTNLAVFHSDYDNYQANFFDTVAGQVVTRLINAGSVSTEGVELDFALQATQQLKFSGALAYTRARIDEFACPAGAAASCNVNGKPLPFSPDWKSYVRADYTIPLDNGLDIELGTDYSWQSEVQYDISQNADTKQGAYGLWNASVALADYTNGWRVALLGKNLSDKSYSPLLASGGNYIYRAVPRDDERYFGVQLRKDF
>NZ_CP028826.1|WP_108559081.1|292423_293461_-|LacI-family-DNA-binding-transcriptional-regulator
MSEEKPRKRRGAGRVTLNAVARQAGVSAITVSRYFNQPEQVSPERRERIAAVVAELGYVPNLVAGGLASARGKIVGMVIPNISGPIFANTIHGFSDTLSRHGYQLMLASSYFSTEQEENAVRAFLGWSPAALVVTSHFHSPGTEKMLAEADIPVIETWDYQPDREPMQIGFSHFEVGVSAARYLHGKGYRRIAFVQNSAPGDFSALERRDGYAATVRELGLEPWVFAPAADRAPFEAGKQAMEALMNASPRPDAIIFANDNLAAGGLLAGQRAGLKIPEDCAVLGFGDYPFAEMLLPSLSTIKPPALEIGVLAATRVLESLGVLPSDEVQRLNLLQCTVIEREST
>NZ_CP028826.1|WP_108559079.1|292121_292394_+|HicB-family-protein
MKFPVVLHKDSDSDYGVIVPDIPGCYSAGGTAAEAISNIQEALALHFAGLVADRESLPQVRDIGAHLDNPEYAGGVWDVVEFDITPYFSI
>NZ_CP028826.1|WP_007952727.1|291607_291868_-|hypothetical-protein
MHTAIIIFFGLILLALMFYIGERIGFSRQTLAYGFAALWLALTVINGAVGVVHAGQPLGSEIAIGSAVYGVPLAAMVLFMVLSAET
>NZ_CP028826.1|WP_108559091.1|302284_303868_-|glutamate--cysteine-ligase
MSELLNRRLALLGERANLSLLEQCLHGIERECLRVTGEGRLAQTPHPEALGSALTNEQITTDYSESLLEFITPALPDPADTLASLDKIHRFAYSKLGNEYLWSPSMPCPLPAEEDIPIAYYGTSNIGQLKYVYRKGLALRYGKTMQCIAGIHYNFSLPEKLWPLLKEAEGFVGTDRDFQSSSYIALIRNFRRYSWLLMYLFGASPALDAGFLRGRAHQLEQLDLDTLYLPYATSLRMSDLGYQSNAQAGLTPCYNDLASYTDSLRKAVATPYAPYVEVGTHQDGEWVQLNTNILQIENEYYSNIRPKRVTYTGERPIQALMARGIQYVEVRCLDINPFLPMGIDLTESRFLDAFLLYCALNESPLLTNNSCGNATSNFLSVVKEGRRPGLQLQRDGQPVELKEWAAELLEKIAPLAALLDQSHGGDAHSKALDAQLAKVKDSSLTPSAQVLAAMATHKESFAQFSLRQSQAHAEFFRGEPLAAEEQAKFEELARSSLAQQAELEQNEVGDFDVFVGSYQASILAISN
>NZ_CP028826.1|WP_108559093.1|304567_306892_-|RNA-binding-transcriptional-accessory-protein
MDSINSRIAEELGVRPQQVEAAVALLDEGSTVPFIARYRKEVTGSLDDTQLRHLEERLRYLRELDERCISILSSIQEQGKLTPELEREIKLADTKTRLEDLYLPYKQKRRTKGQIALEAGLGELADGLFNDPTLTPETEAARFVDAEKGVADAKAALEGAKYILMERFAEDANLLEKLRTYLKQEATLSARVIAGKEEEGAKFRDYFEHDEPLKSMPSHRALAIFRGRNEGILSSALKVGEELPGTLHPCEGMIGQHVGIQNQNRPADKWLSEVVRWTWKVKLYTHLETDLLGELRDGAETEAINVFAHNLHDLLLAAPAGPRATLGLDPGLRTGCKVAVVDSTGKLLDHATVYPHVPHNKWDQTIAILAALCAKHSVDLIAIGNGTASRETDKLAIELIKKYPAMKMTKVMVSEAGASVYSASELAAKEFPDLDVSIRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQLKLARGLDAVVEDCVNAVGVDVNTASVALLARISGLNATLAQNIVAHRDEHGAFKTRAALKKVARLGEKTFEQAAGFLRVMNGDNPLDSSAVHPEAYPLVQRIAAETDRDIRSLIGDAAFLKRLDPKKFTDETFGLPTVTDILQELEKPGRDPRPEFKTAEFQEGVEDLKDLQLGMILEGVVTNVTAFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPRKRVGLSMRMSDTPGEKIDGARGSRPGSAPRQSQGSAPRKESTPAAPANNAMASLFANAKQLKKR
>NZ_CP028826.1|WP_108559095.1|307251_307992_+|two-component-system-response-regulator-OmpR
MSSTAQTAEGEKILIVDDDPGLSSLLERFFVSKGYRARAVPNTEQMDRLLSREVFNLVVLDLMLPGEDGLTACRRLRGANNQIPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELLARVKAVLRRQAAPVPGAPGSEEENVTFGDYVLSLATRELKRGDEVHMLTTGEFAVLNALVMNARKPLTRDKLMNLARGREWDALERSIDVQISRLRRMIEPDPSKPRYIQTVWGVGYVFVPDGNSTK
>NZ_CP028826.1|WP_007952691.1|308106_309420_+|HAMP-domain-containing-protein
MKTPVWFPQSFFSRTLWLVLIVVLFSKALTLVYLLMNEDVLVDRQYSHGVALTLRAYWAADEENRAKIADAATLIRVVGAGVPEGEQHWPYSEIYQRQMQAELGADTEVRLRMHSPPALWVRAPSLGDGWLKVPLYPHPLRGQKIWNVLGWFLAIGLLSTASAWIFVSQLNQPLKRLVYAARQLGQGRSVRLPISDTPSEMAEVYRAFNQMAEDVEQAGRERELMLAGVSHDLRTPLTRLRLSLELMGDRTDLTDDMVRDIEDMDAILDQFLAFIRDGRDESVEEVDLSDLVREVAAPYNQTEEKVRLRLEPIQPFPLRRVSMKRLLNNLIGNALNHAGGSVDVAAYVSGDTSAPYVVLSVMDRGAGIDPSELEAIFNPFTRGDRARGGKGTGLGLAIVKRIASMHGGNVELRNRSGGGLEARVRLPLGLMLPRDAV
>NZ_CP028826.1|WP_007949201.1|309504_310410_-|30S-ribosomal-protein-S6--L-glutamate-ligase
MKIAVLSRNPRLYSTRRLVEAGTERGHEMVVIDTLRAYMNIASHKPQIHYRGKPLEGFDAVIPRIGASVTFYGCAVLRQFEMMGVFPLNESVAIARSRDKLRSLQLLSRRGIGLPVTGFAHSPDDIPDLIDMVNGAPLVIKVLEGTQGIGVVLCETATAAESVIEAFMGLKQNIMVQEYIKEAGGADIRCFVVGDKVIAAMKRQAKPGEFRSNLHRGGSASLIKITPEERMTALRAAKVMGLAVAGVDILRSNHGPLVMEVNSSPGLEGIETTTGKNVAGIIIEHLEKNGGPNMTRTKGKG
>NZ_CP028826.1|WP_011331964.1|310406_310886_-|ATP-dependent-zinc-protease
MKTFDHLTVIGLREWVALPDLGVAGLRAKIDTGASTSSLHATDIEPFERDGEKWVRFTAHLGTVVQLRHRRCEAPLVARKTIKSSNGQAQVRYVISTTLALGDRVWPIEFTLACRKSMRYRLLLGSKALIDGQLVVNPGIKYVQDKPVFPVSTSSTGVA
>NZ_CP028826.1|WP_108559097.1|310902_311682_-|EAL-domain-containing-protein
MTKFPSSLTAPKSGCLGCQQSEPLGFDFSFAYQPIVDLRDESVYAYEALVRGTAGEGALTVLDQVTEDNRYRFDQLCRTRAIEGAAELNMQTHLSINFMPNAVYRPELCIRSTLEAAKKHNFPVDRLIFETLESEHVDNYRHLTNILREYREFGFKTAIDDFGAGYSGLNLLADFQPDLIKLDMALIRDIDHDRVRQAIVRGIVTICAELDVTVIAEGIESAGERDFLADCGIFLMQGYWFARPAFKALAQVSPEAWTR
>NZ_CP028826.1|WP_011331966.1|311798_312206_+|RNA-binding-protein-S4
MAQKSEEDDKVRLDKWLWAARFFKTRALAKAAIESGKVHCRGERCKPGKEPRIGDEFEIRAGFDEKTVVVQALSIVRRGAPEAQTLYAETEASIAKREAAAAMRKAGALGVTTDGKPSKKQRRDLFKFRGNSSGE
>NZ_CP028826.1|WP_108559098.1|312275_313076_-|phosphatase-PAP2-family-protein
MNNPGLFQSRWNLGRLVLCNVVPLALLAFWLWPTGQMLCVIFDEWLFRSLNAPLASNPIWLHIWAIASLRPFDIVVGLILLTLLIKGDWVFRAIDVRRAFFGFFSILLLMVVIRALFSKFADHMGWQHSSPSMVLEGAVHISDYFPHLEKTWELKDRSSQSFPGDHASVLLIWALFMAVFSRTAGQFLVIWGLALLFMLPRLVAGAHWGQDDYIGGLLLAIWALGWGYYTPFAYHAANFWLKVTAPVFRLLGKLPVVSRMSVVSAR
>NZ_CP028826.1|WP_011331968.1|313180_314083_+|Hsp33-family-molecular-chaperone-HslO
MTDFLDTDYTQRFIFDDSDTRGELVSLERSYAEVLAKHPYPEPVAQLLGELMAAASLLVGTLKFDGLLILQARSEGPIPLLMIECSSEREIRGLARYHAEQIPADATLGDLMPNGVLALTVDPIAGQRYQGIVDLDGETLSDCFTNYFVMSQQVGTRFKLCADGRRARGLLLQQLPADRLKDEEERAASWQHITALGNTLTADELLSLDNETVLHRLYHEEQVRLFDVQKLRFHCSCSRERSGNALVSLGLEDAQALVAEQGGQVEIDCQFCNQRYLFDAADIAQLFAGAGVETPSDTRH

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Crispr_ID: NZ_CP028826_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028826_2

672490-672596

Orphan

Consensus_repeat	Method
TCTTGAACCAGACCTTTCTCTTCCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP028826_2

>merge|NZ_CP028826|2|672490-672596|CRISPRCasFinder
TCTTGAACCAGACCTTTCTCTTCCAGACGATCACGGCCGCCTTCAGCTACGGTTTGACCTTGTGGGGTTTTGTCATAGCCATCTTGAACCAGACCTTTTTCTTCCAG

>NZ_CP028826|2|2|672490-672596|CRISPRCasFinder
TCTTGAACCAGACCTTTCTCTTCCAG	ACGATCACGGCCGCCTTCAGCTACGGTTTGACCTTGTGGGGTTTTGTCATAGCCA
TCTTGAACCAGACCTTTTTCTTCCAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028826.1\|WP_108559337.1\|663460_664333_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|183080
NZ_CP028826.1\|WP_108559353.1\|676957_677596_+\|FMN-dependent-NADH-azoreductase	unknown	unknown	gnl\|CDD\|224103
NZ_CP028826.1\|WP_108559343.1\|667686_668820_-\|N-acylglucosamine-2-epimerase	unknown	unknown	gnl\|CDD\|225493
NZ_CP028826.1\|WP_108559354.1\|677596_677902_+\|multidrug-efflux-SMR-transporter	unknown	unknown	gnl\|CDD\|224987
NZ_CP028826.1\|WP_108559356.1\|677993_678884_+\|triacylglycerol-lipase	unknown	unknown	gnl\|CDD\|224001
NZ_CP028826.1\|WP_108559349.1\|671514_672147_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|236881
NZ_CP028826.1\|WP_007950645.1\|669520_670135_-\|urease-accessory-protein-UreG	unknown	unknown	gnl\|CDD\|349776
NZ_CP028826.1\|WP_108559345.1\|670157_670832_-\|urease-accessory-protein-UreF	unknown	unknown	gnl\|CDD\|223900
NZ_CP028826.1\|WP_108559339.1\|665785_666550_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187604
NZ_CP028826.1\|WP_011332225.1\|681369_682383_+\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|223701
NZ_CP028826.1\|WP_108559347.1\|670828_671329_-\|urease-accessory-protein-UreE	unknown	unknown	gnl\|CDD\|237322
NZ_CP028826.1\|WP_108559358.1\|679004_679892_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|273359
NZ_CP028826.1\|WP_108559341.1\|666750_667656_+\|cation-diffusion-facilitator-family-transporter	unknown	unknown	gnl\|CDD\|226474
NZ_CP028826.1\|WP_011332217.1\|675306_675837_-\|bacterioferritin	unknown	unknown	gnl\|CDD\|225104
NZ_CP028826.1\|WP_064379124.1\|668920_669493_-\|HupE/UreJ-family-protein	unknown	unknown	gnl\|CDD\|368209
NZ_CP028826.1\|WP_011332208.1\|664329_665046_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223487
NZ_CP028826.1\|WP_108559351.1\|673167_675243_+\|AsmA-family-protein	unknown	unknown	gnl\|CDD\|225529
NZ_CP028826.1\|WP_064379130.1\|675935_676838_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182990
NZ_CP028826.1\|WP_108563637.1\|679990_680785_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380379
NZ_CP028826.1\|WP_011332224.1\|680848_681154_+\|phosphate-starvation-inducible-protein-PsiF	unknown	unknown	gnl\|CDD\|183165

Protein	Function_ID	Function_description	E-value
NZ_CP028826.1\|WP_108559337.1\|663460_664333_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|183080	PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional.	5.48966e-132
NZ_CP028826.1\|WP_108559353.1\|676957_677596_+\|FMN-dependent-NADH-azoreductase	gnl\|CDD\|224103	COG1182, AcpD, Acyl carrier protein phosphodiesterase [Lipid metabolism].	8.31281e-71
NZ_CP028826.1\|WP_108559343.1\|667686_668820_-\|N-acylglucosamine-2-epimerase	gnl\|CDD\|225493	COG2942, COG2942, N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism].	4.15453e-47
NZ_CP028826.1\|WP_108559354.1\|677596_677902_+\|multidrug-efflux-SMR-transporter	gnl\|CDD\|224987	COG2076, EmrE, Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism].	6.93839e-28
NZ_CP028826.1\|WP_108559356.1\|677993_678884_+\|triacylglycerol-lipase	gnl\|CDD\|224001	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only].	8.50391e-40
NZ_CP028826.1\|WP_108559349.1\|671514_672147_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|236881	PRK11202, PRK11202, HTH-type transcriptional repressor FabR.	2.26661e-41
NZ_CP028826.1\|WP_007950645.1\|669520_670135_-\|urease-accessory-protein-UreG	gnl\|CDD\|349776	cd05540, UreG, urease accessory protein UreG. UreG is one of the four accessory proteins of urease. Urease is an enzyme which catalyzes the decomposition of urea to form ammonia and carbon dioxide. Bacterial urease is a trimer of three subunits which are encoded by genes ureA, ureB, and ureC. Up to four accessory proteins (ureD, ureE, ureF, and ureG) are required for urease catalytical function. UreG may play an important role in nickel incorporation of the urease metallocenter. UreG is a member of the Fer4_NifH superfamily which contains an ATP-binding domain. Proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.	2.22207e-127
NZ_CP028826.1\|WP_108559345.1\|670157_670832_-\|urease-accessory-protein-UreF	gnl\|CDD\|223900	COG0830, UreF, Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones].	8.21959e-59
NZ_CP028826.1\|WP_108559339.1\|665785_666550_+\|SDR-family-oxidoreductase	gnl\|CDD\|187604	cd05346, SDR_c5, classical (c) SDR, subgroup 5. These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	8.9921e-147
NZ_CP028826.1\|WP_011332225.1\|681369_682383_+\|AI-2E-family-transporter	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	3.33156e-11
NZ_CP028826.1\|WP_108559347.1\|670828_671329_-\|urease-accessory-protein-UreE	gnl\|CDD\|237322	PRK13261, ureE, urease accessory protein UreE; Provisional.	1.49822e-59
NZ_CP028826.1\|WP_108559358.1\|679004_679892_-\|DMT-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	7.58884e-12
NZ_CP028826.1\|WP_108559341.1\|666750_667656_+\|cation-diffusion-facilitator-family-transporter	gnl\|CDD\|226474	COG3965, COG3965, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism].	1.16545e-80
NZ_CP028826.1\|WP_011332217.1\|675306_675837_-\|bacterioferritin	gnl\|CDD\|225104	COG2193, Bfr, Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism].	6.07051e-40
NZ_CP028826.1\|WP_064379124.1\|668920_669493_-\|HupE/UreJ-family-protein	gnl\|CDD\|368209	pfam04955, HupE_UreJ, HupE / UreJ protein. This family of proteins are hydrogenase / urease accessory proteins. The alignment contains many conserved histidines that are likely to be involved in nickel binding. The members usually have five membrane-spanning regions.	3.30413e-44
NZ_CP028826.1\|WP_011332208.1\|664329_665046_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223487	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism].	6.31662e-133
NZ_CP028826.1\|WP_108559351.1\|673167_675243_+\|AsmA-family-protein	gnl\|CDD\|225529	COG2982, AsmA, Uncharacterized protein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane].	6.63347e-169
NZ_CP028826.1\|WP_064379130.1\|675935_676838_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	6.99202e-70
NZ_CP028826.1\|WP_108563637.1\|679990_680785_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|380379	cd06124, cupin_NimR-like_N, AraC/XylS family transcriptional regulators similar to NimR, N-terminal cupin domain. This family contains mostly bacterial proteins containing an AraC/XylS family helix-turn-helix (HTH) DNA-binding domain C-terminal to a cupin domain, and may be possible transcriptional regulators. Included in this family is Escherichia coli HTH-type transcriptional regulator NimR (also called YeaM) that negatively regulates expression of the nimT operon and its own expression. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	9.63968e-31
NZ_CP028826.1\|WP_011332224.1\|680848_681154_+\|phosphate-starvation-inducible-protein-PsiF	gnl\|CDD\|183165	PRK11505, PRK11505, phosphate starvation-inducible protein PsiF.	5.42786e-21

>NZ_CP028826.1|WP_108559349.1|671514_672147_-|TetR-family-transcriptional-regulator
MLPRAEQKQQTRNALMDAARHLMESGRGFGSLSLREVTKTAGIVPTGFYRHFADMDELGLVLVSEVGQTFRETIRLVRHNEFVMGGIIDASVRIFLDVVSANRSQFLFLAREQYGGSLSVRQAIGRLREDISSDLAADLALMPKLQHLNREGLSVMADLIVKSVFATLPDIIDPPAEALPEHLTPQAKITQQLRFIFIGLKHWQGLGSTE
>NZ_CP028826.1|WP_108559347.1|670828_671329_-|urease-accessory-protein-UreE
MLVIHRRIDPKPVWAAELHLTFEARSKSRLRCFSAEGEDVGLFLERGQPPLYDGECLQAEDGRIVRVCARPEQLLHVTCANAFELTRAAYHLGNRHVALQVGDGWLRLLDDYVLKAMLEQLGAQVESIEAPFQPEHGAYGGGHHHSRHGDEDFNYAPKLHQFGVRL
>NZ_CP028826.1|WP_108559345.1|670157_670832_-|urease-accessory-protein-UreF
MNPAWALLRLASPQLPIGGYSYSQGLEMAVDNGRVDSPDSARRWISDQLLLNLARFEAPMLLAHCQAAADENWDELLRVCESHRASRETRELHLESRQMGYSLQQLLNGLPELDQAARDFLEHCAEPHLALCWALAARAWQISPQDALAAWLWSWLENQLAVLMKTLPLGQQAAQRLTSELLPLLQQAQQDATRINPEHLGSAAFGLSLACMAHERQYSRLFRS
>NZ_CP028826.1|WP_007950645.1|669520_670135_-|urease-accessory-protein-UreG
MNTQPLRVGIGGPVGSGKTALTLALCLALRERYNLAVVTNDIYTREDADFLVRNEALAPERIIGVETGGCPHTAIREDASINLEAVDQLNRRFPGLDLILVESGGDNLSATFSPELSDLTIYVIDVSAGDKLPRKGGPGICKSDLLVINKIDLAPLVGASLEMMNSDTQRMRNGKPFVFSNQKTGQGLEDIIAFIERQGLLTAA
>NZ_CP028826.1|WP_064379124.1|668920_669493_-|HupE/UreJ-family-protein
MTLKRILGAVALLLTPALAFAHPGHGDSGLVAGISHPIGGLDHLLAMVAVGLWAAQQQGAARWALPCTFVGTMLIGGLLGFEGLELPALESGIAASVLALGLAVALAVRPPLVMAVAATALFALFHGVAHGLELPDMSSPWAYAAGFVVATAALHAAGYAVVRFLPQAAAPLVRLAGAASAVTGAWLLAG
>NZ_CP028826.1|WP_108559343.1|667686_668820_-|N-acylglucosamine-2-epimerase
MPHASRSTSLPELTALFGEVQQHFLNVIVPLWQGPGWNADMALPYEALDAAHQPLPPQRYRAMACARQLYLFSSLIGVVDNAEVRAAALFRSLQRHFHDAEHGGWFYSIDPQGKPLDQRKDLYTHAFILFACAHYWEKSREPLVESTLNAALEVIGRRFATGDGLYEACLDRDWITLQTGPLQNPLMHLAEAFLATLAVREDAQVKQALSELCTAMHKRFVDPQAGVLMEKPLGAVDNWYEPGHQFEWYFLLESSPLLRGSKLHAALDRAFAFTEQYGVMQPSGAVRAMLDLDMDGRPKDSTQRIWAQAEYLRALTLRPDSESAVLRQLQALQQRFLHAGGWHECRDDQGEVSRKDMPSTTPYHLATCYRGLADYLS
>NZ_CP028826.1|WP_108559341.1|666750_667656_+|cation-diffusion-facilitator-family-transporter
MSNRGEQSLLKQSTLLMFAVSIAGIATGFVSGSQSILFDGFFSLIATFIKVLMLITAKLIAKQSNQRFQFGFWHLEPMVLLIEGSFLLLIAIYAFLNGVFGIINGGREIELGLVIIYAAVFTVVEFAYFFYVRHRNRTLKSSLIQFDNISWLVDAMLSVGLLISFLAALLLKSQGYGEWAKFVDPLILIVLALTMLPPAFKILGPALQDVLGIAPDTLDEQVREVMDAAKAEHGFDDYVSYVQKHGRARFIEIHVVLPANYRLQSVGQLDVLREEISAKLGKPDAARWLTISFTADRKWIA
>NZ_CP028826.1|WP_108559339.1|665785_666550_+|SDR-family-oxidoreductase
MSNTLFITGATSGFGEACARRFAEAGWKLVLTGRRGDRLNALCAELSKQTEVHGLVLDVRDRKAMEEAIANLPPSFAKLRGLINNAGLALGVDPAPKCDLDDWDTMVDTNVKGLMYSTRLLLPRLIAHGRGAGIINLGSIAGNYPYPGSHVYGATKAFVKQFSLNLRCDLQGTGVRVSNIEPGLCESEFSLVRFAGDQARYDATYAGAEPIQPQDIAETIFWVLNAPAHININSLELMPVSQTWAGFAIERNKA
>NZ_CP028826.1|WP_011332208.1|664329_665046_+|ABC-transporter-ATP-binding-protein
MTQPILELKDLDVFYGPIQALKGVSLQINEGETVSLIGSNGAGKSTLLMSIFGQPRAAGGQILYQGVDITHKSSHYIASNGIAQSPEGRRVFPDMTVEENLLMGTIPIGDKYAKEDMQRMFELFPRLEERRNQRAMTMSGGEQQMLAIARALMSRPKLLLLDEPSLGLAPIVVKQIFATLRELAKTGMTIFLVEQNANHALKLSDRAYVMVNGEIRLTGTGQELLVNEEVRNAYLGGH
>NZ_CP028826.1|WP_108559337.1|663460_664333_+|ATP-binding-cassette-domain-containing-protein
MSEVVLSVEKLMMHFGGIKALSDVSLKVKRNSIFALIGPNGAGKTTVFNCLTGFYKASGGKIELNVRGRQTNVIQLLGESFKPTDFVSPKSFLSRMYYKMFGGTHLVNRAGLARTFQNIRLFKEMSVLENLLVAQHMWVNRNMLAGILNTKGYRKAESDALDCAFYWLEVVDLVDCANRLAGELSYGQQRRLEIARAMCTRPQIICLDEPAAGLNPQETEALSAMIRLLRDEHDLTVVLIEHDMGMVMSISDHIVVLDHGIVIAEGGPDAIRNDPKVIAAYLGADEEEVV
>NZ_CP028826.1|WP_108559351.1|673167_675243_+|AsmA-family-protein
MTRTRKIFAWTFATLVLLLAVLVLIIVFFDWNRIKPPLNAKVSEELHRPFAINGNLSVVWRRELDEGGWRAWVPWPHVVAEDLTLGNPDWSKQPQMVTLKRVELRISPLALLAQRVTIPRIDLTEPNAQLQRLADGRANWTFKFDPKDPNAEPSNWVVDIGAIGFDKGHVTLDDQTLKTNLDLLIDPLGKPIPFSDIVGDKAAKTAQDKGGAPQDYAFGLKVTGQYHGQKLAGQGKIGGLLALQDASKPFPLQAQAKIGDTSIELAGTLTDPLNLGALDLRLKLAGASLGNLYPLTGVTLPDTPPYATDGHLIAKLHEPGGAQFRYEQFNGKIGSSDIHGDLTYVASQPRPKLSGALLSNQLLFADLAPLIGADSNAKQKARGGESKQPADKVLPVEEFKTERWRDMDADVEFTGKRIVHSEELPFTDLYTHLKLNDGELSLEPLRFGVAGGNLDAQIRLNGRTEPLEGRAKLTARKFKLKQLFPTFEPMKTSFGELNGDADIAGRGNSVAKLLGGANGNLKMLINDGAISRELMELAGLNVGNYVVGKIFGDKEVKINCAAADFDIKTGLATTRLFVFDTENAIIYIDGTANMATEQLDLTVTPESKGWRLISLRSPLYVRGKFIKPDAGVKAVPLMLRGAGMVALGVIAAPAAGLLALVAPSGGEPNQCAPLLEQMKAGKAPATVKPTK
>NZ_CP028826.1|WP_011332217.1|675306_675837_-|bacterioferritin
MSDLQLSDVQTLRERARQHVENGAVTESYSANREEVLRLLNESLATELVCVLRYKRHYFMANGLKANVAADEFLEHATQEAEHADRLAERIVQLGGEPEFNPDLLSKMSHAQYVAGNTLKEMVYEDLVAERIAIDSYREIIQYIGEKDPTTRRIFEDILAQEEEHADDMADILKDL
>NZ_CP028826.1|WP_064379130.1|675935_676838_-|LysR-family-transcriptional-regulator
MFASLPLTALRAFESASRLLSFKAAAEELAVTPTAISHQIRSLEDWLGVALFERLPRQVRLTEGGERLFRSLHGAFLEVAQSVDTLRPQRSGSSLTLSTTAAFAALWLVPRLGRFYAKHPNINVRLDTHCEVIDLHQDASVDLVLRYSLDDYPNLYGLCLFDESFGVYGSPEQVALAARRTPALISVHWHNSKLYAHGWEAWCAQSGENWLNQHPAVREYDEEHYALQAAIAGQGLVLASNILVSQSVASGLLVPYKSEVQVDGAGYSALCVPGRERHPPVKAFFAWLREEAQLSGHVPR
>NZ_CP028826.1|WP_108559353.1|676957_677596_+|FMN-dependent-NADH-azoreductase
MSKILVIHASPRGERSHSRRLAESFLSAWQVRHPQAQVTRREVGRALIPAVNEAFVAAAFYPEPEARPLTMQADLALSDQLVDELFDHDLLLISTPMYNFNVPSSLKAWVDQIVRLGLTFDHTLDNGIAQYTPLLHGKKALIVTSRGGFGFGPGGELEALNHADPWLRTALGFIGINNVTVVAAEGEESAERTFAVSVAEAEQRLFDLARVF
>NZ_CP028826.1|WP_108559354.1|677596_677902_+|multidrug-efflux-SMR-transporter
MAWLFLLIAAGFEVTFAMGMKYAEGFTRLWPSLITVVAAVAGVYFLTLAMRELPVSIAYPIWTAIGSLGTVFLGFALLGESLTLVKLLSVGLIVAGVVGLK
>NZ_CP028826.1|WP_108559356.1|677993_678884_+|triacylglycerol-lipase
MAQDSATRYPLVLVPGMLGFIRLVLYPYWYGIIKALRRGGATVIAVQVSPLNSTEVRGEQLLARIDEILRETGAAKVNLFGHSQGSLTARYAAAKRPDLVASVTSVAGPNHGSELADYLAKHYPADSAKGRILEALLRFVGWLMALLETGYHGPKLPVDIHASHNSLTTEGVALFNQRYPQGLPEIWGGHGPEEVNGVRYYSWSGTLQPGKTDRGGNLFDGTNRSCRLFAKTFVREPGQCDGMVGRYSSHLGTVIGDDYPMDHFDIVNQSLGLVGKGADPVRLFVEHAARLKAAGV
>NZ_CP028826.1|WP_108559358.1|679004_679892_-|DMT-family-transporter
MQYAFPLLAIFIWAGNTVINKLAVGAIFPAEIGFYRWLLAGLLFTPFMLKKVIAHWPQIRPNLGKIFILGVLGMAVYQSLAYFAATLTSATNMGIILSLMPLMSLAMAIISLGQRLTAGALVGAVLSFAGVLVVVSSGSLGALLQHGVNLGDAMMLIATLAYAIYSTLLKKWQLRLPPLVLLYLQVLVAVVVLFPLYAMSPKTGLTLQNIPLVLYACLLASMLAPLAWMQAVQRLGPSRTTLFFNLLPLITALIAAVVLKEQLAMYHLVGGLLTLGGVILSERWTTVLGRRVSVA
>NZ_CP028826.1|WP_108563637.1|679990_680785_+|AraC-family-transcriptional-regulator
MNSKHIDLLDFSELPSAVYFRYADFNAHEYAAPHRHPWGTLEYAAHGVLHMDVDGSRFMSPPQYAVWVPPQVEHSFYSHQPVNYRAVCLAPDVCSDLPAQACTLAISDILKAILKDFAARDVKIPALEADQRLAQVLVDQLRQAPVHQCYLPYASSPGLLTILETLQAEPGNNQPLAHWAAQVHVSERTLARQFVRELGMSFGEWRQRLRYLAAIEALESARSVQEIAFDLGYSSGSAFIAMFARQAGCTPEQYRRSHLEARKV
>NZ_CP028826.1|WP_011332224.1|680848_681154_+|phosphate-starvation-inducible-protein-PsiF
MKMLRVPLLMIGLLLCSQGFAATAQQNKMTTCNADATAKSLKGDERKAFMSTCLKAAPAANDAKALTPQQQKMKTCNADAATKALTGDARKTFMSDCLKKK
>NZ_CP028826.1|WP_011332225.1|681369_682383_+|AI-2E-family-transporter
MPTFSERHVVFWVSCIIIFGGLLLVLPLRLLPSLLAGLLVFELVNMLTPQLQRLIEGRRARWLAVALLGTLVVSVLTLIFAGAISFLLHEAENPGASLDKFMGVVDRARGQLPPFIDAYLPASAAEFRVAIGEWASKHLSELQLVGKDAAHMFVTLLIGMVLGAIIALQRVPDVTKRKPLAAALFDRLHLLVQAFRNIVFAQIKISLLNTFFTGIFLAVVLPLFGIKLPLTKTLIVLTFLLGLLPVIGNLMSNTLITIVGLSLSIWVAIAALGYLIFIHKLEYFLNARIVGGQISAKSWELLLAMLVFEAAFGLPGVVAGPIYYAYLKSELKLGGMV

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Crispr_ID: NZ_CP028826_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028826_3

2064647-2064736

Orphan

Consensus_repeat	Method
TTCCCACGCGGAGCGTGGGAACAATCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP028826_3

>merge|NZ_CP028826|3|2064647-2064736|CRISPRCasFinder
TTCCCACGCGGAGCGTGGGAACAATCAGGTTTGGGGGGGCGGCAGTTTCGGCTGTGATGATTGTTCCCACGCGGAGCGTGGGAACAATCA

>NZ_CP028826|3|3|2064647-2064736|CRISPRCasFinder
TTCCCACGCGGAGCGTGGGAACAATCA	GGTTTGGGGGGGCGGCAGTTTCGGCTGTGATGATTG
TTCCCACGCGGAGCGTGGGAACAATCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028826.1\|WP_108560511.1\|2052575_2054246_-\|bifunctional-protein-serine/threonine-kinase/phosphatase	unknown	unknown	gnl\|CDD\|270916
NZ_CP028826.1\|WP_108560520.1\|2066847_2068038_-\|benzoate/H(+)-symporter-BenE-family-transporter	unknown	unknown	gnl\|CDD\|281578
NZ_CP028826.1\|WP_011333260.1\|2059753_2062024_+\|bifunctional-23S-rRNA-(guanine(2069)-N(7))-methyltransferase-RlmK/23S-rRNA-(guanine(2445)-N(2))-methyltransferase-RlmL	unknown	unknown	gnl\|CDD\|236981
NZ_CP028826.1\|WP_108560526.1\|2069437_2070742_-\|guanine-deaminase	unknown	unknown	gnl\|CDD\|236419
NZ_CP028826.1\|WP_085655244.1\|2070755_2071613_-\|xanthine-dehydrogenase-accessory-protein-XdhC	unknown	unknown	gnl\|CDD\|274366
NZ_CP028826.1\|WP_039770010.1\|2064746_2066207_-\|D-alanyl-D-alanine-carboxypeptidase/D-alanyl-D-alanine-endopeptidase	unknown	unknown	gnl\|CDD\|224938
NZ_CP028826.1\|WP_064378752.1\|2054253_2055465_-\|NarK/NasA-family-nitrate-transporter	unknown	unknown	gnl\|CDD\|225133
NZ_CP028826.1\|WP_108560517.1\|2056415_2057627_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|372585
NZ_CP028826.1\|WP_003223300.1\|2059007_2059223_-\|ribosome-modulation-factor	unknown	unknown	gnl\|CDD\|377425
NZ_CP028826.1\|WP_011333259.1\|2057849_2058869_+\|quinone-dependent-dihydroorotate-dehydrogenase	unknown	unknown	gnl\|CDD\|235388
NZ_CP028826.1\|WP_064384028.1\|2049812_2052266_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224171
NZ_CP028826.1\|WP_108560529.1\|2071740_2074134_-\|xanthine-dehydrogenase-molybdopterin-binding-subunit	unknown	unknown	gnl\|CDD\|274367
NZ_CP028826.1\|WP_064378755.1\|2062170_2064555_+\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NZ_CP028826.1\|WP_039770011.1\|2066441_2066786_+\|YggL-family-protein	unknown	unknown	gnl\|CDD\|183281
NZ_CP028826.1\|WP_011333269.1\|2075847_2076507_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_CP028826.1\|WP_108560523.1\|2068384_2069149_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_CP028826.1\|WP_108560532.1\|2074126_2075581_-\|xanthine-dehydrogenase-small-subunit	unknown	unknown	gnl\|CDD\|274365
NZ_CP028826.1\|WP_108560514.1\|2055824_2056400_-\|ANTAR-domain-containing-response-regulator	unknown	unknown	gnl\|CDD\|226230
NZ_CP028826.1\|WP_108560535.1\|2076509_2079998_+\|chromosome-segregation-protein-SMC	unknown	unknown	gnl\|CDD\|274008
NZ_CP028826.1\|WP_108560508.1\|2049498_2049816_-\|nitrite-reductase-small-subunit-NirD	unknown	unknown	gnl\|CDD\|239606

Protein	Function_ID	Function_description	E-value
NZ_CP028826.1\|WP_108560511.1\|2052575_2054246_-\|bifunctional-protein-serine/threonine-kinase/phosphatase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	1.57362e-51
NZ_CP028826.1\|WP_108560520.1\|2066847_2068038_-\|benzoate/H(+)-symporter-BenE-family-transporter	gnl\|CDD\|281578	pfam03594, BenE, Benzoate membrane transport protein.	2.75657e-153
NZ_CP028826.1\|WP_011333260.1\|2059753_2062024_+\|bifunctional-23S-rRNA-(guanine(2069)-N(7))-methyltransferase-RlmK/23S-rRNA-(guanine(2445)-N(2))-methyltransferase-RlmL	gnl\|CDD\|236981	PRK11783, rlmL, bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL.	0
NZ_CP028826.1\|WP_108560526.1\|2069437_2070742_-\|guanine-deaminase	gnl\|CDD\|236419	PRK09228, PRK09228, guanine deaminase; Provisional.	0
NZ_CP028826.1\|WP_085655244.1\|2070755_2071613_-\|xanthine-dehydrogenase-accessory-protein-XdhC	gnl\|CDD\|274366	TIGR02964, conserved_hypothetical_protein, xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products. [Protein fate, Protein folding and stabilization, Purines, pyrimidines, nucleosides, and nucleotides, Other].	6.12779e-131
NZ_CP028826.1\|WP_039770010.1\|2064746_2066207_-\|D-alanyl-D-alanine-carboxypeptidase/D-alanyl-D-alanine-endopeptidase	gnl\|CDD\|224938	COG2027, DacB, D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) [Cell envelope biogenesis, outer membrane].	8.27676e-122
NZ_CP028826.1\|WP_064378752.1\|2054253_2055465_-\|NarK/NasA-family-nitrate-transporter	gnl\|CDD\|225133	COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism].	3.8349e-116
NZ_CP028826.1\|WP_108560517.1\|2056415_2057627_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|372585	pfam13379, NMT1_2, NMT1-like family. This family is closely related to the pfam09084 family.	2.57169e-121
NZ_CP028826.1\|WP_003223300.1\|2059007_2059223_-\|ribosome-modulation-factor	gnl\|CDD\|377425	pfam04957, RMF, Ribosome modulation factor. This protein associates with 70s ribosomes and converts them to a dimeric form (100S ribosomes) which appear during the transition from the exponential growth phase to the stationary phase of Escherichia coli cells.	6.49519e-24
NZ_CP028826.1\|WP_011333259.1\|2057849_2058869_+\|quinone-dependent-dihydroorotate-dehydrogenase	gnl\|CDD\|235388	PRK05286, PRK05286, quinone-dependent dihydroorotate dehydrogenase.	0
NZ_CP028826.1\|WP_064384028.1\|2049812_2052266_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224171	COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion].	0
NZ_CP028826.1\|WP_108560529.1\|2071740_2074134_-\|xanthine-dehydrogenase-molybdopterin-binding-subunit	gnl\|CDD\|274367	TIGR02965, xanthine_dehydrogenase, xanthine dehydrogenase, molybdopterin binding subunit. Members of the protein family are the molybdopterin-containing large subunit (or, in, eukaryotes, the molybdopterin-binding domain) of xanthine dehydrogenase, and enzyme that reduces the purine pool by catabolizing xanthine to urate. This model is based primarily on bacterial sequences; it does not manage to include all eukaryotic xanthine dehydrogenases and thereby discriminate them from the closely related enzyme aldehyde dehydrogenase. [Purines, pyrimidines, nucleosides, and nucleotides, Other].	0
NZ_CP028826.1\|WP_064378755.1\|2062170_2064555_+\|diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	8.65608e-58
NZ_CP028826.1\|WP_039770011.1\|2066441_2066786_+\|YggL-family-protein	gnl\|CDD\|183281	PRK11702, PRK11702, hypothetical protein; Provisional.	3.24287e-61
NZ_CP028826.1\|WP_011333269.1\|2075847_2076507_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	2.11992e-26
NZ_CP028826.1\|WP_108560523.1\|2068384_2069149_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	8.30389e-55
NZ_CP028826.1\|WP_108560532.1\|2074126_2075581_-\|xanthine-dehydrogenase-small-subunit	gnl\|CDD\|274365	TIGR02963, Includes:_Xanthine_dehydrogenase, xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and [Purines, pyrimidines, nucleosides, and nucleotides, Other].	0
NZ_CP028826.1\|WP_108560514.1\|2055824_2056400_-\|ANTAR-domain-containing-response-regulator	gnl\|CDD\|226230	COG3707, AmiR, Response regulator with putative antiterminator output domain [Signal transduction mechanisms].	2.39506e-66
NZ_CP028826.1\|WP_108560535.1\|2076509_2079998_+\|chromosome-segregation-protein-SMC	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	0
NZ_CP028826.1\|WP_108560508.1\|2049498_2049816_-\|nitrite-reductase-small-subunit-NirD	gnl\|CDD\|239606	cd03530, Rieske_NirD_small_Bacillus, Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium.	3.73817e-54

>NZ_CP028826.1|WP_064378755.1|2062170_2064555_+|diguanylate-cyclase
MSLHPVRPKILGFISEDVSAWLVGVLVLLAGGILTGLLAWGTLNQFHSQLRQRFQLLANERYSRIEERFQDQEQRLDGLRRFFANSESVSRAEFDGYTHPLLLRTQAYSFALRVSGAERAAFEQRVRDEGLSTFSVRELNARGELQLASARDEYVVVVYSQTQSRLGSPLGYDLLAQPLRRSTLERADQLRSLAVSQPMHLVGIEPAYARGVLLVAPVLREGEPRSYGYVMAVISMRQLLADGLPDAFHDYLSVRILDLSTTDQHEVLFESTNEPAQSDLSATRLVRMADHDYQVDILPSEAFMQANHSSVGSVVVLGGLLSLLLSALLYVLVSQRQRALRMVELRTQELHEREQELRGTHGQLRGVLNAATQVAIIATDLRGVINTFNPGAEQMLGYHSNEVVGHMTLENLHFPRELVARAAELSARYGKAIPTCQAMLVEGGEVGGHEAREWTLVRKDGSHLPVNMLATPVLDEQGLWVGHLAICIDITERKRVHEALAARDVLLKKLSAHVPGGIYQFKMEFDGRFSVIYASDGIREIYELEPDVLLLNAEAIFTRIHPQDVSRVRKSIRASADNLSPWREEYRVQLPERGLRWVRGEATPEELPGGGVLWHGYISDISDLKRVEEELRALSVTDSLTGIHNRRYFQERLTTEMARVERGGGELSVIMLDIDHFKRINDQYGHAVGDRVLQAVCERIGHRLRRTDVFCRLGGEEFMVLCPDIDGDHAHMLAEELWHSLRSAPIDVVGVVTASFGIASWRPGEGADALLLRADSGVYAAKQGGRDRVERQMN
>NZ_CP028826.1|WP_011333260.1|2059753_2062024_+|bifunctional-23S-rRNA-(guanine(2069)-N(7))-methyltransferase-RlmK/23S-rRNA-(guanine(2445)-N(2))-methyltransferase-RlmL
MSDRFELFLTCPKGLEGLLIEEAVGLGLEEAREHTSAVRGMATMETAYRLCLWSRLANRVLLVLKRFPMKNAEDLYHGVLDVDWQDHMLADGTLAVEFSGHGSGIDNTHFGALKVKDAIVDKLRTPQGDRPSIDKLNPDLRIHLRLDRGEAILSLDLSGHSLHQRGYRLQQGAAPLKENLAAAILIRSGWPRIAAEGGALADPMCGVGTFLVEAGMIAADMAPNLRREQWGFTAWLGHVPALWKKLHEEAVERAAAGLAKPPLWIRGYEADPRLIQPGRNNVERAGLSEWIKIYQGEVATFEPRPDQNQKGLVICNPPYGERLGDEASLLYLYQNLGERLRQACLNWEAAVFTGAPDLGKRMGIRSHKQYSFWNGALPCKLLLIKVLPDQFVTGERRTPEQRQAEREQAAYDQTPNEPQERKFNKNGNPIKPTPAPAPVIEQPRLSEGGQMFANRLQKNLKAMSKWVKREGIDCYRVYDADMPEYAMAIDLYHDWVHVQEYAAPKSIDPEKASIRMFDALAAIPQALNIDKSRVVVKRRERQSGTKQYERQAAQGKFNEVTEGGVKLLVNLTDYLDTGLFLDHRPMRMRIQKEAAGKRFLNLFCYTATASVHAAKGGARSTTSVDLSKTYLDWARRNLSLNGFSDKNRLEQGDVMAWLENCREEYDLIFIDPPTFSNSKRMEGIFDVQRDQVQLIDLAMARLASGGVLYFSNNFRKFQLEDNLAERYAVEEITASTIDPDFARNGKIHRAWKITAR
>NZ_CP028826.1|WP_003223300.1|2059007_2059223_-|ribosome-modulation-factor
MRRLKRDPLERAFLRGYQYGVGGKSRELCPFTLPSVRQAWINGWREGRGDNWDGMTGTAGIHRLNELHAVG
>NZ_CP028826.1|WP_011333259.1|2057849_2058869_+|quinone-dependent-dihydroorotate-dehydrogenase
MYTLARQLLFKLSPETSHDLSLDLIGAGGRLGLNGLLCKAPASLPVNVMGLQFPNPVGLAAGLDKNGAAIDGFAQLGFGFVEIGTVTPRPQPGNPKPRIFRLPEAEAIINRMGFNNLGVDNLLARVAAAKYKGVLGINIGKNFDTPVERAVDDYLICLDKVYAHASYVTVNVSSPNTPGLRSLQFGDSLKQLLADLATRRAELALRHGKHVPLAIKIAPDMTDEETAQVAQALIETGMDAVIATNTTLSRVGVEGMEHGDEAGGLSGAPVREKSTHTVKVLASELGGKLPIIAAGGITEGKHAAEKIAAGASLVQIYSGFIYKGPALIRESVDAIAAKR
>NZ_CP028826.1|WP_108560517.1|2056415_2057627_-|ABC-transporter-substrate-binding-protein
MTQTSAGPLAWVNGSDAPEKSAINLGFMALSDCASLVVAATQGFAQPYGLTLNLKRQSSWANLRDNLVSGELDAAHSLYGLIYAVHLGIGGVASTDMAVLMGLNQNGQSLNLSHGLQGLGVTGPEALHHHVHQTRAKLTFAQTFPTGTHAMWLYYWLASQGIHPLQDVDSVVVPPPQMVAHLQAGRIDGLCVGEPWAASAVQQNLGFTLATSQTIWPDHPEKVLGCTRAFVEQYPNTARALVMAILEASRFIEESPENRRSTAQLLSAAEYLDAPASCIEPRFLGDYDDGLGNRWQDPHALRFHGDGAVNLPYLSDGMWFMTQFRRWGLLRDDPDYLTVARQVQQLEIYRDAATAVGVAAWGKDMRSSQLIDGKIWDGSDPAAYARSFKLHALSDSAPLLAQR
>NZ_CP028826.1|WP_108560514.1|2055824_2056400_-|ANTAR-domain-containing-response-regulator
MLRILLINDTAKKVGRLKAALTEAGFEVIDESGLTIDLPARVETVRPDVILIDTESPSRDVMEQVVLVSRDQPRPIVMFTDEHDPGVMRQAIKSGVSAYIVEGIHAQRLQPILDVAMARFESDQALRAQLQARDQQLAERKRIELAKGLLMKMKDCTEEEAYTLMRRQAMSRQQKLIQVAEQIIAMSELLG
>NZ_CP028826.1|WP_064378752.1|2054253_2055465_-|NarK/NasA-family-nitrate-transporter
MNKSFWKSGHTPTLFAAFLYFDLSFMVWYLLGPLAVQIAGDLHLTTQQRGLVVATPILAGAVLRFAMGMLADRLSPKTAGLIGQVIVICALFGAWKLGIHSYEQALLLGLFLGMAGASFAVALPLASQWYPPEHQGKAMGIAGAGNSGTVFAALIAPVLAAAFGWSNVFGFALIPLILTLVLFAWLAKNAPERPKAKAMADYFKALGDRDSWWFMFFYSVTFGGFIGLASALPGYFNDQYGLSPVTAGYYTAACVFGGSLMRPLGGALADRFGGIRTLLAMYTVAAVCIAAVGFNLPSSYAALALFVCTMLGLGAGNGAVFQLVPQRFRREIGVMTGLIGMAGGIGGFALAAGMGAIKQSTGSYQLALWLFASLGVLAWFGLHGVKRRWRTTWGSAAVTAARV
>NZ_CP028826.1|WP_108560511.1|2052575_2054246_-|bifunctional-protein-serine/threonine-kinase/phosphatase
MALQLSFAEASATGPRAENQDALRLVTPAPALAASKGFLFAIADGVSQCADGGLAARSTLQALALDYYATPETWSVAQALDRLLLAQNRWLQANGGGQPLLTTVSVLVLRGRRFTLAHVGDCRVYRWHAETLQRISEDHVWDQPGMQHVLKRALGLDQHLVLDFLDGELRDGECFVLLSDGVWAVLGDTTIAGILRDQPDLHSAAQTLVNAAHLAGSQDNASALLVRVDAVGEASLGDALIHLQQWPLPTSLKPGQAFEGWQVQGIVGQSQQSLLYRVLDGQGQAWLLKTLPAQLADDAQASQALLAEEWFLKRVAGRHFPEVHSAGQRQHLYYVMREYSGTTLAQLFAQSGPLPLAQWQDLAERLLRAVGLLHRRQILHRDIKPENLHLGDDGELRLLDFGLAYCPGLSQDAPSTLPGTPSFIAPEAFQGAAPSTHQDLYAVGVTLYFLLTGHFPYGEIEAFQRPRFGVPVSAGRYRPDLPEWLAQCLERGVAADPLQRYETAEEWLLILEQGERRSLNVRPRPLLEREPLKVWRTLALLSLLGNLVLLFLLFHG
>NZ_CP028826.1|WP_064384028.1|2049812_2052266_-|NAD(P)/FAD-dependent-oxidoreductase
MKKLKLVMIGNGMAGVRTLEELLKLSNELYDITVFGAEPHTNYNRILLSPVLAGEQTFEEIVLNDLDWYLENGIKLLLNRKVVEIDRVKRRVIAEDGTEAEYDRLLIATGSTPFILPIPGNTLQGVIGYRDIADTQAMIDTAKTHKHAVVIGGGLLGLEAANGLMLRGMHVTVVHLGEWLLERQLDKTSGQLLQTALESRGLHFRLCEQTQALHDAGNGRVGSVQFKNGDIIPADLVVMAAGIRPNTELAEKAGIPCNRGILVNDTLQTYDPRIYAIGECASHRGIAYGLVAPLFEQAKVCANHLAQLGFARYQGSVTSTKLKVTGIDLFSAGDFMGGEGTETITLSDPIGGVYKKLVIKDDVLVGACLYGDTADGGWYFRQIRENHAIGEIRDHLMFGENALGDVGHQGQDKAMSMADNAEVCGCNGVCKGTIVKAIQEHGLFSVDEVKKHTKAASSCGSCAGLVEQILINTVGGAADVKPKSEKAICGCSDLNHGQIRQAIREQHLLTIAGTMSYLNWRTPNGCATCRPALNYYLISTWPGEAKDDPQSRLINERAHANIQKDGTYSVVPRMWGGVTNPSELRRIADVADKYQVPMVKVTGGQRIDLLGIKKQDLPGVWKDLDMPSGHAYGKSIRTVKTCVGSEFCRFGTQNSTQLGIDLEHDLFNMWSPHKVKLAVSGCPRNCSEAGIKDVGIIGVDSGWEMYIGGNGGIKTEVAEFFVKLKTAEEVREYNGAFLQLYREEAFYLERTVHYLQRVGMEHIKKAVLEDPERRKALNERLQFSLSFEQDPWKERLAQPQLKKEFDVIPVKNLEVPA
>NZ_CP028826.1|WP_108560508.1|2049498_2049816_-|nitrite-reductase-small-subunit-NirD
MNWLDICALEEINALGSRIIAGPKGDIAIFRTSDDEVFALDDRCPHKGGPLSQGLIYGKRVACPLHNWQIDLQSGEAQVPDVGCAHHHPARVENGRVQLALRDAV
>NZ_CP028826.1|WP_039770010.1|2064746_2066207_-|D-alanyl-D-alanine-carboxypeptidase/D-alanyl-D-alanine-endopeptidase
MIKSLRPLLLAGLLLPLALPVSAATINTALTPNVEKALKASKLQPTALSLVMVPLDGPGTPTVYNADVSVNPASTMKLVTTYAALEMLGPNHQWKTEFYTDGDLNGGILNGNLYLKGGGDPKLNMEKLWLLMRDLRANGVTQVTGDLVLDRSFFVQPQLPEFNDDGNDENKPFLVKPDSLLVNLKALRFVARNDNGRVLISVEPPIASINIENTVKALNSKQCTGGVRYNPVPQADGSVTVTVAGQLGEGCSSQTYLSLLDHATYTAGAVRAIWKELGGSIQGKDRLAPTPSSAKVLARAFSPDLAEIIRDINKYSNNTMAQQLFLSLGQKFRNDADGDDAKAAQRVVRQWLAKKGITAPHLVMENGSGLSRSERVSAREMANMLQAAWHSPYAAEYISSLPIAGTDGTMRKRLKTTAMRGEAHVKTGTLNTVRAIAGFSRDVNGNTWAVVAILNDKAPFGASSVLDQVLLDLYKQPRTPQTASVL
>NZ_CP028826.1|WP_039770011.1|2066441_2066786_+|YggL-family-protein
MATNRSQRLRKKLCVDEFQELGFELNLGFKEDLSEEAIDAFLEAFIKEAMEANGLGYVGGDDFGLVCLQKRGSVTEEQRAAVEAWLKTRSELTSTEISPLLDVWYPEKPINAAK
>NZ_CP028826.1|WP_108560520.1|2066847_2068038_-|benzoate/H(+)-symporter-BenE-family-transporter
MNEITHTRLRPLADTSPSAIVAGFIAMMTGYTSSLVLMFQAGQAAGLTTGQISSWIWAISIGMAVCSIGLSLRYRTPITIAWSTPGAALLITSLGGVTYGEAIGAYITCAVLVTICGLTGSFERLVKKIPASLAAALLAGILFKIGSEIFVAAQHRTGLVLGMFFTYLIVKRLSPRYAVLAALLIGTALSGFMGLLDFSGFHLEVATPVWTTPHFSLAATISIGIPLFVVAMTSQNMPGIAVLRADGYNVPASPLITSTGIASLLLAPFGSHGINLAAISAAICTGPHAHEDRNKRYTAAVWCGIFYGIAGVFGATLAALFAALPKELVLSIAALALFGSIINGLSIAMTEVKEREAALITFMVTASGLTLFSIGSAFWGIVAGVLTLLILNWRKA
>NZ_CP028826.1|WP_108560523.1|2068384_2069149_+|GntR-family-transcriptional-regulator
MNEQLQPLKKQPRAGKAGRSGTQDDIVYAHIFEAILEQRLAPGTKLSEEALGEIFGVSRTIIRRALSRLAHEGVVLLRPNRGAVVASPSVEEARQVFLARRLVERAITELAVQHATAEQIAELRQMVNDERDSFSRGDRGAGIRLSGEFHLKLAEAAKNAPLISFQRSLVSQTSLIIAQYESGNRSHCSYDEHTQLIDAIEARNGELAVDLMMHHMDHIDSKLNLDEESASDDLHAVFSHLLQTKKSGRPAAKL
>NZ_CP028826.1|WP_108560526.1|2069437_2070742_-|guanine-deaminase
MPLTRKAYRAAILHSIADPAEVGIEASYEYFEDGLLVVDDGKISALGHASELLPTLPADIEITHHKDALITPGFIDTHIHLPQTGMVGAYGEQLLDWLNTYTFPCESQFADKAHADEVADIFIKELLRNGTTTALVFGSVHPQSVNSFFEAAEKLDLRMIAGKVMMDRNAPDYLTDTPESSYVDSKALIERWHGKGRLHYAVTPRFAPTSTPEQLMLAGQLLSEYPDLYMQTHISENLKEVEWVKALFPERKGYLDVYDHYQLLGERSVFAHGVHLCDDECARLAQTGSAVAFCPTSNFFLGSGLFNLPMAEKHKLNVGLGTDVGGGTSFSLLQTLNEAYKVMQLQGARLSPFKSLYLATLGGARALRLEDKIGNLQPGSDADFLVLDYNATPLLSYRLKQANNIAETLFVLMTLGDDRTVAQTYAAGALVHQR
>NZ_CP028826.1|WP_085655244.1|2070755_2071613_-|xanthine-dehydrogenase-accessory-protein-XdhC
MYNWIDALADLQNQGEPCVLVTIIEELGSTPRNAGSKMVVSARQTFDTIGGGHLEYKAMQIARDMLASGRQDTHLERFSLGASLGQCCGGATVLLFEPMGQVQAQIAVFGAGHVGRALVPLLASLPCRVRWIDSREEEFPEQIPHGVRKIVAEEPVDEIDDLPAGSYCIVMTHNHQLDLELTAAILKRNDFTWFGLIGSKTKRAKFEHRLRDRGFDASVVQRMRCPMGIGEVKGKLPVEIAISIAGEIIATYNANFGQHTASAEPIAKLLPVSRRSQAATLKASN
>NZ_CP028826.1|WP_108560529.1|2071740_2074134_-|xanthine-dehydrogenase-molybdopterin-binding-subunit
MSNHHGVEKTQAELAELFAKDLTTGVGRSVKHDSAAKHVSGEAQYIDDRLEFPNQLHVYARLSDRAHAKIISIDTQPCYAFEGVRIAITHEDVPGLKDIGPLLPGDPLLAIDDVQFVGQPVLAVAAKDLETARKAAMAAIIEYEDLEPVLDVVEALRKRHFVLDSHTHQRGDSANALATAEHRIQGTLHIGGQEHFYLETQISSVMPTEDGGMIVYCSTQNPTEVQKLVAEVLDVSMNKIVVDMRRMGGGFGGKETQAASPACLCAVIAHLTGQPTKMRLPRVEDMLMTGKRHPFYVEYDVGFDSTGRLHGIAMDLAGNCGCSPDLSASIVDRAMFHSDNSYYLGDATINGHRCKTNTASNTAYRGFGGPQGMVAIEEVMDAIARHLNLDPLAVRKANYYGKTERNVTHYYQTVEHNMLEEMTAELEESSQYAERREAIRRYNANSPILKKGLALTPVKFGISFTASFLNQAGALVHVYTDGSIHLNHGGTEMGQGLNTKVAQVVAEVFQVEMDRVQITATNTDKVPNTSPTAASSGADLNGKAAQNAAETIKRRLVEFAARHYKVSEEDVEFHNGHVRVRDHILTFEALIQLAYFNQVSLSSTGFYKTPKIYYDRSQARGRPFYYFAFGAACCEVIVDTLTGEYKMLRTDILHDVGASLNPAIDIGQVEGGFVQGMGWLTMEELVWNNKGKLMTNGPASYKIPAVADMPLDLRVKLVENRKNPEDTVFHSKAVGEPPFMLGIAAWCAIKDAVASLGDYKHQPKIDAPATPERVLWGCEQMRQLKAVKAVEAETEVV
>NZ_CP028826.1|WP_108560532.1|2074126_2075581_-|xanthine-dehydrogenase-small-subunit
MIQFLLNQELRSEHALDPNLTVLNYLREHVGKSGTKEGCASGDCGACTVVVGELQTDDDGREHIRYRSLNSCLTFVSSLHGKQLISVEDLKHKGELHSVQKAMVECHGSQCGFCTPGFVMSLFALQKNSDAPDQAKAHEALAGNLCRCTGYRPILAAAEQSCCAKQPDQFDAREAETIARLKAIAPTSIGELNSGDKRCLVPLTVADLADLYDAYPQARLLAGGTDLALEVTQFHRTLPVMIYVGNVAEMKRIEHFEDRIEIGAATALSDCYEALNAEYPDFGELLHRFASLQIRNQGTLGGNIGNASPIGDSPPLLIALGAQIVLCKGETRRTLALEDYFIDYRVTARQESEFIEKIIVPRATAEQRFRAYKVSKRLDDDISAVCAAFNLRVENGVITDARVAFGGMAAIPKRAAHCEAVLLGQPFNNAVIERACTALGEDFTPLSDFRASKEYRLLSAQNLLRKYFIELQTPHIETRVTAYV
>NZ_CP028826.1|WP_011333269.1|2075847_2076507_+|GntR-family-transcriptional-regulator
MTFKAPDSLAEQIAHHLAERIIRGEMKPGERIQEQKVTLALNVSRGSVREALLILERRHLIAILPRRGAHVTELTAHKVQSLCTLMSELYILLGNAVANGWQTQADMAPFVQIQQRLTASYERQDIRTFVDDSFNVMRAAYPFANNPYLQETVENLQPAMSRAYFLALEQRKAEMSEFLELFERLLAAVLARDLPQIRIVLTAYAQRSCDLVVSALTVA
>NZ_CP028826.1|WP_108560535.1|2076509_2079998_+|chromosome-segregation-protein-SMC
MRLKCIKLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGESMTDVIFNGSTSRKPVSQASIELVFDNSDGTLLGEWAAYAEISIRRKVTRDSQTTYYLNGAKCRRRDITDIFLGTGLGPRSYSIIEQGMISKLIESKPEDLRNFIEEAAGISKYKERRRETENRIRRTHENLARLTDLREELERQLERLHRQAEAAKKYQEYKAEERQLKAQLSALRWQDLNDQVSQRESIIGNQEISFEALVAEQRNADAAIERLRDGHHDLSERFNLVQGRFYSVGGDIARVEQSIQHGQQRLRQLQDDLKEAERARLETESHLGHDRTLLLTLGEELDQLTPEQEITNAAAEEAAAALEDSETVMHGWQEQWDAFNLTAAEPRRQAEVQQSRIQQLETSMERLADRQKRLSEERALLSADPEDAAIMELSEQLAESEATLEDLQTSEAAQVEKLEQLRQELQQALTAQQQAQGDLQRLNGRLASLEALQQAALDPGTGTAEWLKEHNLAERPRLAEGLKVEAGWELAVETVLGADLQAVLVDDFDGFDLSGFAQGDLRLLSPGNDGVRVAGSLLDKVEAQVDLSPWLAQVKPVDSLEQALALRGQLAAGQSLISRDGYWVGRHFLRVRRASEAESGMLARGQEIESLHAEREEREATVEAMEARLQTLRAQQRQQENGREHLRRLLQDEARQQGELKAQLSAGKAKAEQLNLRRTRLDEELVELAEQRELEHENIGEARIQLQDALDAMALDTEQRELLLAQRDSLRERLDRVRQEARQHKDHAHQLAVRLGSLRAQHDSTRQALERLEMQAERLTEKREQLSLNLEEGEAPLEELRLKLEELLDKRMSVDDELKTAQIALEDADRELRDAEKRRTQAEQQSQLIRGQLEQQRMEWQALTVRRKALQDQLLEDGYDLHGVLNTLTAEASERAAEEELERIAARIQRLGAINLAAIDEYQQQSERKRYLDAQDADLVEALETLENVIRKIDKETRNRFKDTFDQINGGLQALFPKVFGGGRAYLELTGEDLLDTGVTIMAQPPGKKNSTIHLLSGGEKALTALALVFAIFKLNPAPFCMLDEVDAPLDDANVGRYARLVKEMSQTVQFIYITHNKIAMEMADQLMGVTMHEPGCSRLVAVDVEEAMAMVDA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1270852 : 1380724

110

Pseudomonas_phage(46.3%)

tRNA,plate,holin,tail,lysis

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039762445.1\|1270852_1271671_+\|tRNA	tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA	S4VW33	Pandoravirus	3.0e-08	33.9
WP_108559806.1\|1271825_1272233_-	SufE family protein	NA	NA	NA	NA
WP_108559808.1\|1272229_1273435_-	cysteine desulfurase	Q2XUY6	environmental_halophage	4.9e-68	35.6
WP_011332675.1\|1273560_1274595_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA
WP_003222107.1\|1274626_1274989_-	ArsC family reductase	NA	NA	NA	NA
WP_011332677.1\|1275170_1276802_+	Na+/H+ antiporter	NA	NA	NA	NA
WP_108559810.1\|1276826_1277498_-	hypothetical protein	NA	NA	NA	NA
WP_108559812.1\|1277680_1278415_-	peptidase M12	NA	NA	NA	NA
WP_108559814.1\|1278580_1279780_-	succinyldiaminopimelate transaminase	NA	NA	NA	NA
WP_064379009.1\|1279823_1282526_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA
WP_039769663.1\|1282566_1283349_-	type I methionyl aminopeptidase	NA	NA	NA	NA
WP_008052780.1\|1283723_1284461_+	30S ribosomal protein S2	NA	NA	NA	NA
WP_108559815.1\|1284651_1285515_+	elongation factor Ts	NA	NA	NA	NA
WP_011332683.1\|1285726_1286470_+	UMP kinase	NA	NA	NA	NA
WP_011332684.1\|1286466_1287024_+	ribosome recycling factor	NA	NA	NA	NA
WP_064379010.1\|1287038_1287794_+	di-trans,poly-cis-decaprenylcistransferase	R9W0U9	Flavobacterium_phage	1.1e-17	38.1
WP_011332686.1\|1287793_1288600_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_108563649.1\|1288596_1289787_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_064379012.1\|1291266_1293642_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_003222140.1\|1293687_1294191_+	OmpH family outer membrane protein	NA	NA	NA	NA
WP_064379013.1\|1294194_1295250_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_003222142.1\|1295356_1295797_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_108559817.1\|1295793_1296570_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_108559819.1\|1296572_1297703_+	lipid-A-disaccharide synthase	NA	NA	NA	NA
WP_064379016.1\|1297714_1298341_+	ribonuclease HII	V5LS49	Emiliania_huxleyi_virus	1.3e-27	38.9
WP_108559821.1\|1298417_1301939_+	DNA polymerase III subunit alpha	A0A1C9LWZ5	Streptomyces_phage	4.1e-200	37.0
WP_064379018.1\|1302078_1303026_+	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA
WP_108559822.1\|1303173_1304502_+\|tRNA	tRNA lysidine(34) synthetase TilS	A7IXR9	Paramecium_bursaria_Chlorella_virus	3.8e-05	24.6
WP_011332696.1\|1304776_1306408_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	2.4e-158	53.5
WP_108559824.1\|1306413_1307259_+	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	4.7e-49	42.4
WP_007954808.1\|1307415_1308705_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	6.9e-137	59.2
WP_003222158.1\|1308876_1309155_+	cell division protein FtsB	NA	NA	NA	NA
WP_108559826.1\|1309151_1309859_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_108559828.1\|1309855_1310752_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_108559830.1\|1310868_1311981_+	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	E3SJ82	Synechococcus_phage	1.1e-32	29.5
WP_011332701.1\|1312036_1312882_+	S-formylglutathione hydrolase	NA	NA	NA	NA
WP_007954821.1\|1312925_1313399_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_108559832.1\|1313395_1314454_+\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_108559834.1\|1314441_1315191_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	3.0e-68	53.0
WP_007954826.1\|1315190_1315868_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.1e-43	50.2
WP_108559836.1\|1316080_1316962_+	peptidoglycan DD-metalloendopeptidase family protein	A0A0S2SXL7	Bacillus_phage	6.6e-06	33.3
WP_007954831.1\|1317068_1318076_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	5.0e-34	35.8
WP_007908827.1\|1318564_1318888_-	ferredoxin family protein	NA	NA	NA	NA
WP_108559838.1\|1319051_1321634_-	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	1.6e-28	22.8
WP_045121746.1\|1321844_1322579_+	helix-turn-helix transcriptional regulator	B5TK58	Pseudomonas_phage	5.0e-132	95.1
WP_108559840.1\|1323106_1323526_+	hypothetical protein	NA	NA	NA	NA
WP_064384038.1\|1323656_1324076_+\|tail	tail assembly chaperone	NA	NA	NA	NA
WP_084776901.1\|1324219_1324411_+	Com family DNA-binding transcriptional regulator	B5TK59	Pseudomonas_phage	7.3e-11	84.2
WP_064384039.1\|1324415_1324994_+	DUF642 domain-containing protein	NA	NA	NA	NA
WP_108559842.1\|1325104_1325443_+\|holin	pyocin R2, holin	B5TK61	Pseudomonas_phage	3.2e-49	87.3
WP_108559844.1\|1325517_1326039_+	hypothetical protein	NA	NA	NA	NA
WP_108559846.1\|1326042_1326651_+\|plate	phage baseplate assembly protein V	A0A2H4JBW8	uncultured_Caudovirales_phage	2.5e-36	56.7
WP_085683341.1\|1326665_1326998_+\|plate	phage baseplate protein	A0A2H4JI46	uncultured_Caudovirales_phage	3.6e-37	70.0
WP_108559847.1\|1326994_1327990_+\|plate	baseplate J protein	A0A2H4JC04	uncultured_Caudovirales_phage	3.0e-111	62.9
WP_108559849.1\|1327986_1328622_+\|tail	phage tail protein I	A0A2H4JDK0	uncultured_Caudovirales_phage	6.8e-45	52.5
WP_064379033.1\|1331574_1332120_+	DUF4376 domain-containing protein	A0A1S5R1J2	Pseudomonas_phage	4.8e-23	50.0
WP_085612311.1\|1332221_1332407_+	hypothetical protein	NA	NA	NA	NA
WP_074691321.1\|1332409_1333576_+\|tail	phage tail protein	B0ZSG8	Halomonas_phage	4.7e-124	56.7
WP_064379035.1\|1333575_1334082_+\|tail	phage tail protein	Q6R4W3	Vibrio_virus	9.0e-24	35.1
WP_064379036.1\|1334181_1334763_+\|tail	phage tail assembly protein	B0ZSH0	Halomonas_phage	7.2e-25	35.7
WP_108559851.1\|1334891_1337090_+\|tail	phage tail tape measure protein	NA	NA	NA	NA
WP_064379038.1\|1337086_1337470_+\|tail	phage tail protein	A0A2H4JAC8	uncultured_Caudovirales_phage	5.0e-35	52.0
WP_064379039.1\|1337462_1337675_+\|tail	phage tail protein	A0A2H4JGD9	uncultured_Caudovirales_phage	1.8e-18	64.3
WP_108559853.1\|1337684_1338713_+\|tail	phage tail protein	B0ZSH3	Halomonas_phage	8.1e-96	51.3
WP_108559855.1\|1338774_1339359_+	hypothetical protein	B5TK65	Pseudomonas_phage	1.9e-81	76.8
WP_007954893.1\|1339355_1339535_+	DUF2635 domain-containing protein	B5TK66	Pseudomonas_phage	5.2e-19	80.0
WP_064379042.1\|1339534_1341031_+\|tail	phage tail protein	B5TK67	Pseudomonas_phage	7.5e-260	91.8
WP_007908779.1\|1341098_1341446_+\|tail	phage tail protein	B5TK68	Pseudomonas_phage	3.8e-58	93.9
WP_003222226.1\|1341442_1341739_+\|tail	phage tail assembly protein	B5TK69	Pseudomonas_phage	2.8e-41	90.8
WP_108559857.1\|1341869_1343888_+\|tail	phage tail protein	B5TK70	Pseudomonas_phage	1.7e-60	53.6
WP_108559859.1\|1343874_1345110_+	hydroxyacid dehydrogenase	B5TK71	Pseudomonas_phage	1.2e-170	72.1
WP_108559861.1\|1345113_1346157_+\|plate	baseplate protein	B5TK72	Pseudomonas_phage	2.2e-157	79.4
WP_011332728.1\|1346315_1346825_+\|plate	phage baseplate assembly protein	B5TK73	Pseudomonas_phage	6.4e-78	86.4
WP_108559863.1\|1346824_1347223_+	hypothetical protein	B5TK74	Pseudomonas_phage	4.7e-68	93.9
WP_108559865.1\|1347212_1348256_+\|plate	baseplate J/gp47 family protein	B5TK75	Pseudomonas_phage	3.2e-156	80.9
WP_011332730.1\|1348243_1348843_+	DUF2313 domain-containing protein	B5TK76	Pseudomonas_phage	3.6e-104	90.5
WP_108559867.1\|1348854_1349949_+\|tail	phage tail protein	B5TK79	Pseudomonas_phage	1.5e-161	75.8
WP_108559869.1\|1349956_1350523_+\|tail	phage tail protein	B5TK80	Pseudomonas_phage	6.2e-74	68.7
WP_064379050.1\|1350545_1351472_+	hypothetical protein	B5TK77	Pseudomonas_phage	3.8e-20	72.7
WP_108559871.1\|1351471_1351939_+	hypothetical protein	NA	NA	NA	NA
WP_108559873.1\|1351980_1352877_+\|tail	phage tail protein	B5TK81	Pseudomonas_phage	2.5e-61	48.6
WP_064379053.1\|1352877_1353324_+	hypothetical protein	B5TK82	Pseudomonas_phage	8.8e-23	39.2
WP_108559875.1\|1353342_1354503_+	hypothetical protein	B5TK77	Pseudomonas_phage	1.3e-17	57.0
WP_064379055.1\|1354502_1354757_+	hypothetical protein	NA	NA	NA	NA
WP_064379056.1\|1354790_1355354_+	glycoside hydrolase family 19 protein	B5TK83	Pseudomonas_phage	3.2e-86	81.2
WP_108559877.1\|1355335_1355866_+\|lysis	lysis protein	B5TK84	Pseudomonas_phage	3.7e-60	75.3
WP_108559879.1\|1355934_1356435_+	CinA family protein	B5TK85	Pseudomonas_phage	5.0e-75	88.0
WP_003222269.1\|1356518_1357577_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	4.5e-110	58.9
WP_108559881.1\|1357585_1358056_+	recombination regulator RecX	NA	NA	NA	NA
WP_085612334.1\|1358124_1359243_-	TIGR00730 family Rossman fold protein	NA	NA	NA	NA
WP_011332745.1\|1359595_1359790_+	hypothetical protein	NA	NA	NA	NA
WP_064379061.1\|1359790_1360216_-	hypothetical protein	NA	NA	NA	NA
WP_085655601.1\|1360405_1361149_+	DTW domain-containing protein	NA	NA	NA	NA
WP_139831636.1\|1361115_1361382_-	hypothetical protein	NA	NA	NA	NA
WP_064379063.1\|1361374_1362025_+	response regulator transcription factor	NA	NA	NA	NA
WP_003222276.1\|1362100_1362463_+	diacylglycerol kinase	NA	NA	NA	NA
WP_011332748.1\|1362459_1363386_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003222277.1\|1363530_1364310_+	ferredoxin--NADP reductase	NA	NA	NA	NA
WP_108559883.1\|1364420_1365128_-\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
WP_085655598.1\|1365317_1366088_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_108559885.1\|1366244_1366712_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.2e-38	52.6
WP_011332751.1\|1366786_1367497_-	RNA-binding protein S4	NA	NA	NA	NA
WP_064379067.1\|1367701_1368175_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_011332753.1\|1368286_1369624_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA
WP_064379068.1\|1369911_1371813_+	potassium transporter Kup	M1HZV6	Acanthocystis_turfacea_Chlorella_virus	7.4e-79	34.6
WP_108559887.1\|1372077_1373373_-	virulence factor family protein	NA	NA	NA	NA
WP_085655596.1\|1373372_1376012_-	bifunctional lysylphosphatidylglycerol flippase/synthetase MprF	NA	NA	NA	NA
WP_064379074.1\|1376927_1377989_+	DNA polymerase IV	NA	NA	NA	NA
WP_011332758.1\|1378037_1378991_-	hypothetical protein	NA	NA	NA	NA
WP_108559889.1\|1379008_1380724_-\|tRNA	proline--tRNA ligase	A0A2K9L0T2	Tupanvirus	6.9e-07	25.4

DBSCAN-SWA_2

3834626 : 3840814

uncultured_Caudovirales_phage(83.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_108563703.1\|3834626_3835019_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	2.3e-51	76.7
WP_007958208.1\|3835020_3835377_+	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	1.7e-37	65.8
WP_108562673.1\|3835376_3835670_+	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	2.6e-31	68.7
WP_064380667.1\|3835666_3836002_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	1.6e-45	82.0
WP_108562675.1\|3835998_3837000_+	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	3.3e-163	85.4
WP_108562677.1\|3837091_3838093_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_108562679.1\|3838138_3839533_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_064380676.1\|3839533_3840814_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.7e-98	53.9

DBSCAN-SWA_3

3947478 : 3983108

Escherichia_phage(25.0%)

coat,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_108562753.1\|3947478_3948450_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_108562755.1\|3948446_3950804_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_108562756.1\|3950888_3951671_-	molecular chaperone	NA	NA	NA	NA
WP_011335016.1\|3951695_3952196_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_007951533.1\|3952200_3952737_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_108562757.1\|3952757_3953291_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_108562758.1\|3953391_3953901_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_108562759.1\|3954188_3955322_+	cell division protein ZapE	NA	NA	NA	NA
WP_108562760.1\|3955384_3956698_+	serine/threonine-protein kinase	NA	NA	NA	NA
WP_011335021.1\|3956737_3957442_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_108562761.1\|3957661_3959065_+	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_108562762.1\|3959068_3960466_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_064380788.1\|3960532_3961858_-	MFS transporter	NA	NA	NA	NA
WP_108562763.1\|3962147_3963020_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_108562764.1\|3963141_3964002_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_108562765.1\|3964115_3965225_+	2-aminoethylphosphonate--pyruvate transaminase	NA	NA	NA	NA
WP_108562766.1\|3965378_3966206_+	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA
WP_108562767.1\|3966308_3966614_-	hypothetical protein	NA	NA	NA	NA
WP_159085223.1\|3966630_3967035_+	hypothetical protein	NA	NA	NA	NA
WP_064380796.1\|3967276_3967831_+	cytochrome b	A0A0U2QLA7	Escherichia_phage	3.4e-16	39.6
WP_108562769.1\|3967827_3968736_-	pyridoxal-phosphate dependent enzyme	NA	NA	NA	NA
WP_108562770.1\|3968777_3970817_-	NADPH-dependent 2,4-dienoyl-CoA reductase	NA	NA	NA	NA
WP_064380801.1\|3971022_3972150_+	carbon-nitrogen hydrolase	NA	NA	NA	NA
WP_108562771.1\|3972153_3973194_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_139831576.1\|3973198_3973387_-	hypothetical protein	NA	NA	NA	NA
WP_064380804.1\|3973514_3974360_-	DUF2242 domain-containing protein	NA	NA	NA	NA
WP_108562772.1\|3974452_3975352_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_108562773.1\|3975474_3976680_+	MFS transporter	NA	NA	NA	NA
WP_108562774.1\|3976740_3978612_-	peptidylprolyl isomerase	NA	NA	NA	NA
WP_002552737.1\|3978843_3979116_-	HU family DNA-binding protein	A7KV42	Bacillus_phage	1.4e-18	58.4
WP_108562775.1\|3979264_3981661_-	endopeptidase La	A0A0R6PGP8	Moraxella_phage	1.7e-221	52.0
WP_007951558.1\|3981824_3983108_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	2.1e-138	59.7

DBSCAN-SWA_4

5647740 : 5710355

Tupanvirus(16.67%)

protease,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_108563420.1\|5647740_5648244_-\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
WP_085654009.1\|5648509_5649397_+	acyltransferase	NA	NA	NA	NA
WP_011336267.1\|5649398_5649956_-	DUF2780 domain-containing protein	NA	NA	NA	NA
WP_108563421.1\|5650219_5650618_+	hypothetical protein	NA	NA	NA	NA
WP_011336270.1\|5650698_5651898_-	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	2.5e-11	28.9
WP_007959808.1\|5652099_5652957_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_108563422.1\|5652970_5653603_-	sarcosine oxidase subunit gamma family protein	NA	NA	NA	NA
WP_085654007.1\|5653735_5656753_-	sarcosine oxidase subunit alpha	NA	NA	NA	NA
WP_011336273.1\|5656749_5657079_-	sarcosine oxidase subunit delta	NA	NA	NA	NA
WP_003206307.1\|5657093_5658344_-	sarcosine oxidase subunit beta	NA	NA	NA	NA
WP_011336274.1\|5658364_5659618_-	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	1.7e-100	53.0
WP_108563423.1\|5659900_5660611_-	conjugal transfer protein TraX	NA	NA	NA	NA
WP_064380249.1\|5660738_5661779_+	low specificity L-threonine aldolase	NA	NA	NA	NA
WP_039768014.1\|5662108_5662642_+	hypothetical protein	NA	NA	NA	NA
WP_108563424.1\|5662890_5663715_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_108563425.1\|5663805_5664291_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_108563720.1\|5664287_5665736_+	hypothetical protein	A0A2H4JEI9	uncultured_Caudovirales_phage	5.1e-72	49.8
WP_064380244.1\|5665732_5666119_+	hypothetical protein	NA	NA	NA	NA
WP_011336281.1\|5666186_5667287_-	glycine-betaine demethylase subunit GbcB	NA	NA	NA	NA
WP_108563426.1\|5667568_5668861_+	glycine-betaine demethylase subunit GbcA	NA	NA	NA	NA
WP_108563427.1\|5669003_5670248_-	metallophosphoesterase	NA	NA	NA	NA
WP_108563428.1\|5670273_5672142_-	hypothetical protein	NA	NA	NA	NA
WP_108563429.1\|5672290_5675743_-	FAD-binding protein	NA	NA	NA	NA
WP_064380237.1\|5676737_5677508_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
WP_085654001.1\|5677517_5678738_-	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_011336288.1\|5678737_5680687_-	dimethylglycine demethylation protein DgcB	NA	NA	NA	NA
WP_011336289.1\|5680853_5682914_-	dimethylglycine demethylation protein DgcA	NA	NA	NA	NA
WP_007926354.1\|5682929_5683460_-	hypothetical protein	NA	NA	NA	NA
WP_108563430.1\|5683540_5684515_-	membrane dipeptidase	NA	NA	NA	NA
WP_064380231.1\|5684749_5685151_+	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_108563431.1\|5685196_5686162_-	tyrosinase family protein	NA	NA	NA	NA
WP_007959772.1\|5686423_5686840_+	DUF3010 family protein	NA	NA	NA	NA
WP_011336293.1\|5686840_5688013_-	hypothetical protein	NA	NA	NA	NA
WP_011336294.1\|5688081_5689026_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_064380226.1\|5689219_5690164_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_108563432.1\|5690239_5691127_+	3-keto-5-aminohexanoate cleavage protein	NA	NA	NA	NA
WP_011336297.1\|5691267_5692233_+	L-carnitine dehydrogenase	NA	NA	NA	NA
WP_064380221.1\|5692288_5692765_+	4-hydroxybenzoyl-CoA thioesterase	NA	NA	NA	NA
WP_108563433.1\|5692789_5693953_+	gamma-butyrobetaine dioxygenase	NA	NA	NA	NA
WP_108563434.1\|5694904_5696188_-	ATP-binding protein	NA	NA	NA	NA
WP_064380218.1\|5696657_5696921_+	hypothetical protein	NA	NA	NA	NA
WP_011336300.1\|5697046_5698150_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_108563435.1\|5698817_5700194_-	L-serine ammonia-lyase	NA	NA	NA	NA
WP_064380214.1\|5700628_5701579_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_064380213.1\|5701656_5702502_+\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_064380211.1\|5702498_5703677_+\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-25	37.1
WP_007959745.1\|5703872_5705870_-	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	1.1e-19	27.4
WP_011336305.1\|5706296_5706890_+	transcriptional regulator BetI	NA	NA	NA	NA
WP_064380209.1\|5706998_5708471_+	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_108563436.1\|5708651_5710355_+\|holin	choline dehydrogenase	A0A1V0SI18	Klosneuvirus	2.2e-50	30.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP028826

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection