CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NZ_CP044979	Bacillus thuringiensis strain BT62 plasmid pBT62A, complete sequence	0 crisprs	cas14j,csa3	0	0	40
NZ_CP044978	Bacillus thuringiensis strain BT62 chromosome, complete genome	4 crisprs	csa3,DEDDh,cas14k,cas14j,cas3,DinG,Cas14u_CAS-V,WYL	1	6	7
NZ_CP044982	Bacillus thuringiensis strain BT62 plasmid pBT62D, complete sequence	1 crisprs	NA	0	1	0
NZ_CP044981	Bacillus thuringiensis strain BT62 plasmid pBT62C, complete sequence	0 crisprs	NA	0	0	0
NZ_CP044980	Bacillus thuringiensis strain BT62 plasmid pBT62B, complete sequence	0 crisprs	csa3,cas6,cas8b1,cas7b,cas5,cas14j	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 29178

Vibrio_phage(33.33%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_088346495.1\|1409_2126_+	hypothetical protein	NA	NA	NA	NA
WP_088362543.1\|4629_5154_-	hypothetical protein	NA	NA	NA	NA
WP_088362542.1\|5157_6822_-	hypothetical protein	NA	NA	NA	NA
WP_001070984.1\|6818_7181_-	DUF3958 domain-containing protein	NA	NA	NA	NA
WP_025689740.1\|7249_7522_-	TIGR04197 family type VII secretion effector	NA	NA	NA	NA
WP_107992310.1\|8514_8688_+	hypothetical protein	NA	NA	NA	NA
WP_103622618.1\|8691_9345_+	SMI1/KNR4 family protein	NA	NA	NA	NA
WP_103622620.1\|11317_13666_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_103622621.1\|13827_15069_+	MFS transporter	NA	NA	NA	NA
WP_103622622.1\|15105_15456_+	cupin domain-containing protein	NA	NA	NA	NA
WP_103622623.1\|15452_17918_+	S9 family peptidase	NA	NA	NA	NA
WP_103622624.1\|18328_18538_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_103622625.1\|19373_20021_-	2OG-Fe(II) oxygenase	NA	NA	NA	NA
WP_107992325.1\|20505_21012_+	hypothetical protein	NA	NA	NA	NA
WP_000240398.1\|21299_21518_+	hypothetical protein	NA	NA	NA	NA
WP_103622626.1\|22102_23389_+	amino acid permease	NA	NA	NA	NA
WP_000654819.1\|23372_23969_+	methylphosphotriester-DNA--protein-cysteine methyltransferase family protein	V9LZQ4	Vibrio_phage	1.2e-06	32.0
WP_151909500.1\|24224_24626_+\|transposase	IS200/IS605 family transposase	Q332K6	Clostridium_botulinum_C_phage	2.6e-50	71.0
WP_001245414.1\|26051_26525_+	DUF1203 domain-containing protein	NA	NA	NA	NA
WP_088363307.1\|27564_29178_+	SH3 domain-containing protein	A0A1J0MS59	Bacillus_phage	5.1e-44	54.9

DBSCAN-SWA_2

32825 : 37288

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_088363305.1\|32825_33200_-	hypothetical protein	D2XQ01	Bacillus_virus	4.2e-26	45.8
WP_103621946.1\|33249_33762_-	damage repair protein	O64031	Bacillus_phage	6.3e-33	45.0
WP_103621945.1\|34348_35440_+	hypothetical protein	A0A2H4J8G3	uncultured_Caudovirales_phage	6.6e-96	50.1
WP_000725639.1\|35439_35598_+	Phr family secreted Rap phosphatase inhibitor	NA	NA	NA	NA
WP_070184225.1\|35787_36582_+	hypothetical protein	NA	NA	NA	NA
WP_002182105.1\|36604_36844_+	hypothetical protein	NA	NA	NA	NA
WP_001043944.1\|37015_37288_-	HU family DNA-binding protein	A7KV42	Bacillus_phage	9.7e-25	67.8

DBSCAN-SWA_3

50777 : 51203

Streptococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_103621936.1\|50777_51203_+	HD domain-containing protein	A0A060QNR4	Streptococcus_phage	2.1e-37	63.4

DBSCAN-SWA_4

55750 : 56842

uncultured_Caudovirales_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_103621932.1\|55750_56842_-	tetratricopeptide repeat protein	A0A2H4J8G3	uncultured_Caudovirales_phage	2.3e-88	46.9

DBSCAN-SWA_5

62126 : 63650

Liberibacter_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_103621927.1\|62126_63650_+	SAM-dependent DNA methyltransferase	A0A220A2U4	Liberibacter_phage	1.5e-53	29.3

DBSCAN-SWA_6

82733 : 83443

Clostridium_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_103621916.1\|82733_83093_-	helix-turn-helix transcriptional regulator	A0A0A8WFJ2	Clostridium_phage	3.2e-15	44.8
WP_001033047.1\|83245_83443_+	helix-turn-helix domain-containing protein	A0A142LP09	Marinitoga_camini_virus	9.5e-06	44.1

DBSCAN-SWA_7

99877 : 102433

Catovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_103621906.1\|99877_102433_+	glycosyltransferase	A0A1V0SAH6	Catovirus	2.9e-09	31.1

DBSCAN-SWA_8

108444 : 108771

Lactobacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_103621902.1\|108444_108771_-	helix-turn-helix transcriptional regulator	A0A0P0IZG9	Lactobacillus_phage	4.8e-10	36.6

DBSCAN-SWA_9

114654 : 122253

Tupanvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_103621897.1\|114654_122253_+	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	4.3e-162	27.7

DBSCAN-SWA_10

132181 : 133987

Organic_Lake_phycodnavirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_103621888.1\|132181_133987_+	ABC transporter ATP-binding protein	F2Y302	Organic_Lake_phycodnavirus	5.0e-16	29.1

DBSCAN-SWA_11

139030 : 142111

Aureococcus_anophage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_103621885.1\|139030_141115_+	ATP-binding cassette domain-containing protein	A0A076FI99	Aureococcus_anophage	9.5e-19	25.7
WP_103621884.1\|141205_142111_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	3.7e-44	40.8

DBSCAN-SWA_12

147065 : 148166

uncultured_Caudovirales_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_103622157.1\|147065_148166_-	hypothetical protein	A0A2H4J8G3	uncultured_Caudovirales_phage	3.8e-83	44.8

DBSCAN-SWA_13

164521 : 165286

Trichoplusia_ni_ascovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_103622997.1\|164521_165286_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	4.0e-23	31.7

DBSCAN-SWA_14

169738 : 170812

Faustovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_103622996.1\|169738_170812_+	patatin-like phospholipase family protein	A0A0H3TN97	Faustovirus	1.8e-29	28.4

DBSCAN-SWA_15

177886 : 192158

Bacillus_phage(60.0%)

integrase,transposase

attL 172732:172752|attR 204845:204865

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
172732:172752	attL	NA	NA	NA	NA
WP_151909503.1\|177886_179008_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	S6AND0	Bacillus_phage	8.9e-173	81.2
WP_103621664.1\|179425_180427_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_103621665.1\|180830_182003_+\|integrase	tyrosine-type recombinase/integrase	A0A142F1N9	Bacillus_phage	5.2e-06	24.4
WP_103621666.1\|182465_183113_-	YukJ family protein	NA	NA	NA	NA
WP_103621667.1\|183653_185396_+	S8 family serine peptidase	A0A1V0S9L2	Catovirus	7.2e-12	28.3
WP_103621668.1\|185529_185712_+	hypothetical protein	NA	NA	NA	NA
WP_103621669.1\|186873_187839_+	S8 family peptidase	A0A127AWU5	Bacillus_phage	6.9e-81	53.6
WP_103621670.1\|188324_189077_+	hypothetical protein	NA	NA	NA	NA
WP_103621671.1\|189250_190123_+	DNA/RNA non-specific endonuclease	NA	NA	NA	NA
WP_000573033.1\|190368_190602_+	hypothetical protein	NA	NA	NA	NA
WP_103621672.1\|190790_192158_+	S8 family serine peptidase	Q2A0D0	Sodalis_phage	3.6e-19	26.0
204845:204865	attR	NA	NA	NA	NA

DBSCAN-SWA_16

206023 : 209204

Geobacillus_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_103621522.1\|206023_206857_-	peptidase M15	A0A0H3V0Q8	Geobacillus_virus	8.1e-30	47.1
WP_103621521.1\|207416_209204_+	peptidoglycan-binding protein	A0A2L0HNW5	Microbacterium_phage	9.3e-07	30.8

DBSCAN-SWA_17

213384 : 216932

Tetraselmis_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_103621518.1\|213384_214347_-	endonuclease I	A0A2P0VMP9	Tetraselmis_virus	5.5e-14	31.6
WP_103621517.1\|215969_216932_+	S8 family peptidase	A0A127AWU5	Bacillus_phage	1.5e-91	58.0

DBSCAN-SWA_18

219992 : 223980

Brevibacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_103621514.1\|219992_221066_-	tyrosine recombinase XerS	A0A0K2CP59	Brevibacillus_phage	3.9e-08	25.1
WP_103621513.1\|222264_222516_-	hypothetical protein	NA	NA	NA	NA
WP_103621512.1\|223151_223598_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_103621511.1\|223743_223980_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A125RQ76	Bacillus_phage	4.2e-32	94.4

DBSCAN-SWA_19

247173 : 251171

Bacillus_phage(50.0%)

integrase,transposase

attL 237327:237343|attR 262597:262613

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
237327:237343	attL	NA	NA	NA	NA
WP_103621496.1\|247173_247494_+	TM2 domain-containing protein	A0A127AZ85	Bacillus_phage	2.7e-10	39.8
WP_151909504.1\|247902_249024_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	S6AND0	Bacillus_phage	1.5e-172	81.5
WP_103621967.1\|249447_249732_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A2I6AZV9	Macacine_betaherpesvirus	2.1e-09	42.0
WP_103621966.1\|249743_251171_-	MBL fold metallo-hydrolase	H8ZJP5	Ostreococcus_tauri_virus	7.0e-05	36.7
262597:262613	attR	NA	NA	NA	NA

DBSCAN-SWA_20

256991 : 260411

uncultured_Caudovirales_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_103621963.1\|256991_258107_+	tetratricopeptide repeat protein	A0A2H4J8G3	uncultured_Caudovirales_phage	2.8e-110	55.5
WP_142391011.1\|258428_260411_-	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	1.9e-13	31.3

DBSCAN-SWA_21

266491 : 267481

Salmonella_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_103621956.1\|266491_267481_-	DUF4065 domain-containing protein	I6R0L8	Salmonella_phage	2.8e-05	32.4

DBSCAN-SWA_22

279527 : 280460

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_103621753.1\|279527_280460_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.6e-45	43.5

DBSCAN-SWA_23

289651 : 325639

Paenibacillus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_103621762.1\|289651_290239_-	thermonuclease family protein	A0A2P1JU10	Anoxybacillus_phage	2.2e-05	31.7
WP_103621763.1\|291829_292363_-	hypothetical protein	NA	NA	NA	NA
WP_103621764.1\|292430_296102_-	type I polyketide synthase	D0R7J2	Paenibacillus_phage	2.9e-55	38.3
WP_142390996.1\|296124_300939_-	amino acid adenylation domain-containing protein	A0A2K9KZV5	Tupanvirus	4.0e-105	26.0
WP_103621766.1\|300851_302681_-	hypothetical protein	D0R7J2	Paenibacillus_phage	1.2e-22	28.2
WP_151909505.1\|302765_304913_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_151909506.1\|304893_311052_-	SDR family NAD(P)-dependent oxidoreductase	D0R7J2	Paenibacillus_phage	9.6e-35	27.9
WP_151909507.1\|311071_325639_-	SDR family NAD(P)-dependent oxidoreductase	D0R7J2	Paenibacillus_phage	3.4e-38	30.7

DBSCAN-SWA_24

329768 : 331865

Paenibacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_151909511.1\|329768_331865_-	hypothetical protein	D0R7J2	Paenibacillus_phage	3.3e-35	30.4

DBSCAN-SWA_25

341705 : 357728

Paenibacillus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_151909512.1\|341705_349649_-	SDR family NAD(P)-dependent oxidoreductase	D0R7J2	Paenibacillus_phage	2.9e-36	30.9
WP_151909513.1\|349593_349911_-	hypothetical protein	NA	NA	NA	NA
WP_151909514.1\|349805_350333_-	hypothetical protein	NA	NA	NA	NA
WP_151909515.1\|350382_356094_-	SDR family NAD(P)-dependent oxidoreductase	D0R7J2	Paenibacillus_phage	1.8e-35	33.9
WP_103621797.1\|356097_356931_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_103621796.1\|356927_357728_-	alpha/beta fold hydrolase	A0A023W6C9	Mycobacterium_phage	4.6e-06	32.0

DBSCAN-SWA_26

366238 : 366877

Clostridioides_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_103621790.1\|366238_366877_-	NERD domain-containing protein	A0A2R2ZH57	Clostridioides_phage	2.3e-24	36.1

DBSCAN-SWA_27

375141 : 379442

Streptococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_103622732.1\|375141_376533_+	PLP-dependent aminotransferase family protein	A0A1X9I5H2	Streptococcus_phage	7.0e-26	26.3
WP_103622731.1\|377948_379442_+	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	1.1e-82	40.3

DBSCAN-SWA_28

384793 : 385072

Paenibacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_088363541.1\|384793_385072_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	A0A2I7SC16	Paenibacillus_phage	1.9e-12	57.4

DBSCAN-SWA_29

394845 : 401848

Bacillus_phage(20.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_103622527.1\|394845_396111_+	Y-family DNA polymerase	O64031	Bacillus_phage	7.9e-101	46.1
WP_000063576.1\|396107_396449_+	YolD-like family protein	A0A1Q1PW34	Staphylococcus_phage	1.8e-07	32.1
WP_001161879.1\|396495_396909_+	hypothetical protein	D2XQ01	Bacillus_virus	3.4e-29	50.4
WP_000998210.1\|397224_397677_-	SMI1/KNR4 family protein	NA	NA	NA	NA
WP_103622528.1\|397681_400939_-	hypothetical protein	A0A2I7SCU7	Paenibacillus_phage	1.4e-32	30.4
WP_103622529.1\|401302_401848_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	2.0e-37	46.1

DBSCAN-SWA_30

405237 : 406374

uncultured_Caudovirales_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_033689567.1\|405237_406374_-	aspartate phosphatase	A0A2H4J8G3	uncultured_Caudovirales_phage	1.6e-73	41.3

DBSCAN-SWA_31

412208 : 412631

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_103622535.1\|412208_412631_-	hypothetical protein	A0A1B1P7B4	Bacillus_phage	3.8e-60	77.9

DBSCAN-SWA_32

431489 : 437751

Bacillus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_103621807.1\|431489_431765_-	hypothetical protein	A0A0S2GLD3	Bacillus_phage	2.7e-14	49.4
WP_103621808.1\|432755_433235_-	hypothetical protein	NA	NA	NA	NA
WP_103621809.1\|433324_433708_-	ArpU family transcriptional regulator	A0A1B1P853	Bacillus_phage	4.0e-24	46.5
WP_103621810.1\|434566_434866_+	hypothetical protein	NA	NA	NA	NA
WP_107992312.1\|435758_435944_+	hypothetical protein	NA	NA	NA	NA
WP_103621811.1\|436449_437751_+	DUF4041 domain-containing protein	A0A1B0Y697	Lactobacillus_phage	1.1e-89	54.7

DBSCAN-SWA_33

497969 : 499619

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_103622359.1\|497969_499619_+	S8 family serine peptidase	A0A217EQY2	Bacillus_phage	1.6e-08	24.1

DBSCAN-SWA_34

504081 : 504804

Synechococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_103622363.1\|504081_504804_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3ELR0	Synechococcus_phage	9.5e-43	41.0

DBSCAN-SWA_35

512074 : 520231

Enterobacteria_phage(25.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_103622369.1\|512074_512953_+	NAD(P)-dependent oxidoreductase	A0A140G5S6	Enterobacteria_phage	1.6e-12	24.1
WP_103622370.1\|512949_514251_+	DegT/DnrJ/EryC1/StrS family aminotransferase	A0A2K9L0G1	Tupanvirus	4.2e-41	32.5
WP_103622371.1\|514377_515592_+	MFS transporter	A0A1B0RXA6	Streptococcus_phage	3.1e-14	24.0
WP_103622372.1\|515657_517427_+	hypothetical protein	NA	NA	NA	NA
WP_103622373.1\|517447_517759_+	nucleotide pyrophosphohydrolase	NA	NA	NA	NA
WP_103622374.1\|517777_520231_+\|tRNA	class I tRNA ligase family protein	A0A1V0SK04	Klosneuvirus	3.9e-80	31.2

DBSCAN-SWA_36

524182 : 524398

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001167047.1\|524182_524398_+	alpha/beta-type small acid-soluble spore protein	A0A1P8CX76	Bacillus_phage	3.7e-19	68.7

DBSCAN-SWA_37

527463 : 535461

uncultured_Caudovirales_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_103622379.1\|527463_528345_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	9.5e-45	41.7
WP_086388116.1\|530831_531926_-	tetratricopeptide repeat protein	A0A2H4J8G3	uncultured_Caudovirales_phage	3.4e-92	48.8
WP_098236842.1\|532257_532515_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_103622380.1\|532735_534106_+	M23 family metallopeptidase	D7RWE0	Brochothrix_phage	4.3e-20	42.6
WP_103622381.1\|534714_535461_+	AAA family ATPase	A0A2H4J4U1	uncultured_Caudovirales_phage	5.4e-33	38.9

DBSCAN-SWA_38

543048 : 548171

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_103622602.1\|543048_544824_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.5e-44	27.8
WP_103622603.1\|544816_545128_+	PqqD family protein	NA	NA	NA	NA
WP_103622604.1\|545120_545513_+	lasso peptide biosynthesis B2 protein	NA	NA	NA	NA
WP_103622605.1\|545512_547348_+	asparagine synthetase B	L7RC73	Acanthamoeba_polyphaga_moumouvirus	2.8e-14	25.5
WP_103622606.1\|547424_548171_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.3e-30	35.7

DBSCAN-SWA_39

552116 : 555735

Tupanvirus(50.0%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_103622609.1\|552116_553058_-\|protease	zinc metalloprotease	A0A2K9KZL9	Tupanvirus	2.6e-24	33.7
WP_103622610.1\|553140_553332_-	hypothetical protein	NA	NA	NA	NA
WP_103622611.1\|553346_554270_-	Zn-dependent exopeptidase M28	NA	NA	NA	NA
WP_103622612.1\|554846_555533_-	YukJ family protein	NA	NA	NA	NA
WP_103622627.1\|555624_555735_+	N-acetylmuramoyl-L-alanine amidase	A0A2H4JAS1	uncultured_Caudovirales_phage	8.7e-09	85.7

DBSCAN-SWA_40

561004 : 561721

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_103622616.1\|561004_561721_+	response regulator transcription factor	W8CYM9	Bacillus_phage	3.8e-36	36.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP044978

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP044978_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044978_1

574383-574516

Orphan

Consensus_repeat	Method
GTTGATTTCTCTTCTTTTTGAGA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP044978_1

>merge|NZ_CP044978|1|574383-574516|CRISPRCasFinder
GTTGATTTTTCTTCTTTCTTCGGTTCTTCTTTTTTGTCACTAGTTGAACCGCTTGTTGATTTCTCTTCTTTTTGAGACTTGTCTTCTGTTTTACTTTCTGGTTTCGTGCTCGTTGACTTCTCTTCTTTTTGAGA

>NZ_CP044978|1|1|574383-574516|CRISPRCasFinder
GTTGATTTTTCTTCTTTCTTCGG	TTCTTCTTTTTTGTCACTAGTTGAACCGCTT
GTTGATTTCTCTTCTTTTTGAGA	CTTGTCTTCTGTTTTACTTTCTGGTTTCGTGCTC
GTTGACTTCTCTTCTTTTTGAGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044978.1\|WP_000457978.1\|572317_573319_-\|rod-shape-determining-protein	unknown	unknown	gnl\|CDD\|237563
NZ_CP044978.1\|WP_103622696.1\|583527_585030_-\|NADH-quinone-oxidoreductase-subunit-M	unknown	unknown	gnl\|CDD\|235622
NZ_CP044978.1\|WP_000411274.1\|579466_580771_-\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|236486
NZ_CP044978.1\|WP_103622700.1\|567826_568594_-\|tyrosine-protein-phosphatase	unknown	unknown	gnl\|CDD\|226870
NZ_CP044978.1\|WP_002005985.1\|580810_581521_-\|YwmB-family-TATA-box-binding-protein	unknown	unknown	gnl\|CDD\|370056
NZ_CP044978.1\|WP_000672663.1\|578240_579260_-\|stage-II-sporulation-protein-D	unknown	unknown	gnl\|CDD\|274332
NZ_CP044978.1\|WP_000544012.1\|573479_573752_-\|sporulation-transcriptional-regulator-SpoIIID	unknown	unknown	gnl\|CDD\|378813
NZ_CP044978.1\|WP_000393132.1\|569397_570141_-\|capsular-polysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|226453
NZ_CP044978.1\|WP_000568229.1\|585026_586889_-\|NADH-quinone-oxidoreductase-subunit-L	unknown	unknown	gnl\|CDD\|235836
NZ_CP044978.1\|WP_103622699.1\|570414_571092_-\|CpsD/CapB-family-tyrosine-protein-kinase	unknown	unknown	gnl\|CDD\|349772
NZ_CP044978.1\|WP_078420849.1\|577135_578143_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP044978.1\|WP_000008901.1\|574060_574195_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044978.1\|WP_103622698.1\|576111_576954_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP044978.1\|WP_000144436.1\|575404_576112_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378925
NZ_CP044978.1\|WP_001207159.1\|568706_569408_-\|CpsD/CapB-family-tyrosine-protein-kinase	unknown	unknown	gnl\|CDD\|349772
NZ_CP044978.1\|WP_103622697.1\|582005_583526_-\|NADH-quinone-oxidoreductase-subunit-NuoN	unknown	unknown	gnl\|CDD\|235603
NZ_CP044978.1\|WP_103622702.1\|566004_566685_-\|sugar-transferase	unknown	unknown	gnl\|CDD\|376775
NZ_CP044978.1\|WP_000931959.1\|571451_571886_-\|3-hydroxyacyl-ACP-dehydratase-FabZ	unknown	unknown	gnl\|CDD\|234568
NZ_CP044978.1\|WP_000057889.1\|581566_581803_-\|DUF1146-domain-containing-protein	unknown	unknown	gnl\|CDD\|227173
NZ_CP044978.1\|WP_103622701.1\|566702_567584_-\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	unknown	unknown	gnl\|CDD\|224131

Protein	Function_ID	Function_description	E-value
NZ_CP044978.1\|WP_000457978.1\|572317_573319_-\|rod-shape-determining-protein	gnl\|CDD\|237563	PRK13928, PRK13928, rod shape-determining protein Mbl; Provisional.	0
NZ_CP044978.1\|WP_103622696.1\|583527_585030_-\|NADH-quinone-oxidoreductase-subunit-M	gnl\|CDD\|235622	PRK05846, PRK05846, NADH:ubiquinone oxidoreductase subunit M; Reviewed.	1.24901e-177
NZ_CP044978.1\|WP_000411274.1\|579466_580771_-\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	gnl\|CDD\|236486	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated.	0
NZ_CP044978.1\|WP_103622700.1\|567826_568594_-\|tyrosine-protein-phosphatase	gnl\|CDD\|226870	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	6.85852e-106
NZ_CP044978.1\|WP_002005985.1\|580810_581521_-\|YwmB-family-TATA-box-binding-protein	gnl\|CDD\|370056	pfam08680, DUF1779, TATA-box binding. TATA-box_bdg is a family of bacterial proteins. YwmB from Bacillus subtilis contains a circularly permuted TATA-box binding protein-like fold. Jian-Xiang Liu, Qi Xie, Jun Lin. Protein Structural Data Mining and Evolutionary Bioinformatic Analysis on Domains of TATA-box Binding Protein-like Fold. Life Science Journal 2014; 11(2): 298-302 (not yet in PubMed 27-02-2014).	5.16446e-34
NZ_CP044978.1\|WP_000672663.1\|578240_579260_-\|stage-II-sporulation-protein-D	gnl\|CDD\|274332	TIGR02870, Stage_II_sporulation_protein_D, stage II sporulation protein D. Stage II sporulation protein D (SpoIID) is a protein of the endospore formation program in a number of lineages in the Firmicutes (low-GC Gram-positive bacteria). It is expressed in the mother cell compartment, under control of Sigma-E. SpoIID, along with SpoIIM and SpoIIP, is one of three major proteins involved in engulfment of the forespore by the mother cell. [Cellular processes, Sporulation and germination].	5.80584e-135
NZ_CP044978.1\|WP_000544012.1\|573479_573752_-\|sporulation-transcriptional-regulator-SpoIIID	gnl\|CDD\|378813	pfam12116, SpoIIID, Stage III sporulation protein D. This stage III sporulation protein is a small DNA-binding family that is essential for gene expression of the mother-cell compartment during sporulation. The domain is found in bacteria and viruses, and is about 40 amino acids in length. It has a conserved RGG sequence motif.	1.17272e-38
NZ_CP044978.1\|WP_000393132.1\|569397_570141_-\|capsular-polysaccharide-biosynthesis-protein	gnl\|CDD\|226453	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane].	1.26803e-86
NZ_CP044978.1\|WP_000568229.1\|585026_586889_-\|NADH-quinone-oxidoreductase-subunit-L	gnl\|CDD\|235836	PRK06590, PRK06590, NADH:ubiquinone oxidoreductase subunit L; Reviewed.	0
NZ_CP044978.1\|WP_103622699.1\|570414_571092_-\|CpsD/CapB-family-tyrosine-protein-kinase	gnl\|CDD\|349772	cd05387, BY-kinase, bacterial tyrosine-kinase. Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on a C-terminal tyrosine cluster and also phosphorylate endogenous protein substrates by using ATP as phosphoryl donor. Besides their capacity to function as tyrosine kinase, most of these proteins are also involved in the production and transport of exopolysaccharides. BY-kinases are involved in a number of physiological processes ranging from stress resistance to pathogenicity.	5.36667e-77
NZ_CP044978.1\|WP_078420849.1\|577135_578143_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	1.07668e-31
NZ_CP044978.1\|WP_103622698.1\|576111_576954_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	1.99243e-88
NZ_CP044978.1\|WP_000144436.1\|575404_576112_-\|ABC-transporter-permease	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	3.92715e-09
NZ_CP044978.1\|WP_001207159.1\|568706_569408_-\|CpsD/CapB-family-tyrosine-protein-kinase	gnl\|CDD\|349772	cd05387, BY-kinase, bacterial tyrosine-kinase. Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on a C-terminal tyrosine cluster and also phosphorylate endogenous protein substrates by using ATP as phosphoryl donor. Besides their capacity to function as tyrosine kinase, most of these proteins are also involved in the production and transport of exopolysaccharides. BY-kinases are involved in a number of physiological processes ranging from stress resistance to pathogenicity.	6.3494e-84
NZ_CP044978.1\|WP_103622697.1\|582005_583526_-\|NADH-quinone-oxidoreductase-subunit-NuoN	gnl\|CDD\|235603	PRK05777, PRK05777, NADH-quinone oxidoreductase subunit NuoN.	1.18746e-149
NZ_CP044978.1\|WP_103622702.1\|566004_566685_-\|sugar-transferase	gnl\|CDD\|376775	pfam02397, Bac_transf, Bacterial sugar transferase. This Pfam family represents a conserved region from a number of different bacterial sugar transferases, involved in diverse biosynthesis pathways.	3.15152e-98
NZ_CP044978.1\|WP_000931959.1\|571451_571886_-\|3-hydroxyacyl-ACP-dehydratase-FabZ	gnl\|CDD\|234568	PRK00006, fabZ, 3-hydroxyacyl-ACP dehydratase FabZ.	5.26499e-95
NZ_CP044978.1\|WP_000057889.1\|581566_581803_-\|DUF1146-domain-containing-protein	gnl\|CDD\|227173	COG4836, COG4836, Predicted membrane protein [Function unknown].	1.23409e-23
NZ_CP044978.1\|WP_103622701.1\|566702_567584_-\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	gnl\|CDD\|224131	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane].	0

>NZ_CP044978.1|WP_000008901.1|574060_574195_-|hypothetical-protein
MSFLFVLSTAIILLFVLFTLYYYIAGKKEVPHHQLLEEEFEREE
>NZ_CP044978.1|WP_000544012.1|573479_573752_-|sporulation-transcriptional-regulator-SpoIIID
MHDYIKERTIKIGKYIVETRKTVRVIAKEFGVSKSTVHKDLTERLPEINPELANEVKEILDYHKSIRHLRGGEATKQKYRKEDVEKPVRQ
>NZ_CP044978.1|WP_000457978.1|572317_573319_-|rod-shape-determining-protein
MFARDIGIDLGTANVLIHVKGKGIVLNEPSVVAIDRNSGKVLAVGEEARSMVGRTPGNIVAIRPLKDGVIADFEITEAMLKYFINKLDVKSFFSKPRILICCPTNITSVEQKAIREAAERSGGKTVFLEEEPKVAAVGAGMEIFQPSGNMVVDIGGGTTDIAVLSMGDIVTSSSIKMAGDKFDMEILNYIKRKYKLLIGERTSEDIKIKVGTVFPGARSEELEIRGRDMVTGLPRTITVCSEEITEALKENAAVIVQAAKGVLERTPPELSADIIDRGVILTGGGALLHGIDMLLAEELKVPVLIAENPMHCVAVGTGIMLENIDRLPKRALR
>NZ_CP044978.1|WP_000931959.1|571451_571886_-|3-hydroxyacyl-ACP-dehydratase-FabZ
MLNIEQIKEIIPHRYPFLLVDKILEVDEGKRAVGIKNVSANEEFFNGHFPDYAVMPGVLIVEALAQVGAVAVLKKEENRGRLAFFAGIDNCRFKKQVRPGDQLRLEVEMTRVRGPIGKGKAIATVDGEVACEAEITFAIGDKKE
>NZ_CP044978.1|WP_103622699.1|570414_571092_-|CpsD/CapB-family-tyrosine-protein-kinase
MFGRKKRKPLRQLITHKEPKSRIAEQYRNIRTNIEFTSVDNHIRSIIVTSVDPGDGKTTTIANLAVVFGQQGKKVLLIGADLRKPTLQNLFAAYSPNGLTNLLSGQTSFVQCIQKTDIENVYVMSAGPIPPNPAELLGYRKMDEVLLEAYKMFDIVLIDTPPVMAVTDAQILANKCDGIVLVARSEKTEKDKLIKVKQILDKASGKLLGVILNDKREEQEPYGYY
>NZ_CP044978.1|WP_000393132.1|569397_570141_-|capsular-polysaccharide-biosynthesis-protein
MEETISLKELFHILKKRLAMILVIAFGAAIVSAIISFFFMTPIYQSSTQILVNQKKQEGAAIQYNEVQTNIQLTNTYKVIIKSPVILDQVKEKLGLNMTVQELNNKIEVANEKDSQVVAVTAQDKDPKLARDIANTTAEVFQGEVAKIMSVDNVTVLSKAEVAENLSPIKPRPMLNVAIAFVVGLMASIGLAFLLEYLDNTVKKEEDVENLLGLPVLGIVARMDEETLNVKSHAPSSRKVRGQTIGS
>NZ_CP044978.1|WP_001207159.1|568706_569408_-|CpsD/CapB-family-tyrosine-protein-kinase
MALNLFKKKKNHRQRRQLIAHQQPKSPISEQYRNIRTNIEFAAVDLNLHSLMVTSANPSEGKTTTTANMAVVFAQQGKKVLLIDADMRKPAMHQMFQVDNIFGLTNVLTHSERLEKCVQTTSIDNLSFLACGPIPPNPAELLGSKSMKELLGQAYSMYDLVIFDMPPILAVTDAQIMANVCDASILVVRSESTEKETAVKAKGLLESAKGKLLGVVLNDREREEGLYYYYGAN
>NZ_CP044978.1|WP_103622700.1|567826_568594_-|tyrosine-protein-phosphatase
MIDLHCHILPGIDDGAQTVTDSLAMAQQAVSEGIHTIVATPHHQNGKYINERTSIIHGVKQLNDELQQHNIPLTILPGQEVRLYGNLLEDYETGKIVTLNETNKYIFIEFPSNHVPRYAEQLLYELRVKGMIPIIVHPERNAELIERPDKLYNLVNKGTLTQVTAGSLLGKFGKKIKKFSLQLVEHNLTHMVASDAHNTTSRGFHLAESYELIEKEFGMSVMSDLRENPYLLISGKAIYKEDPEQIRRKKLFGIF
>NZ_CP044978.1|WP_103622701.1|566702_567584_-|UTP--glucose-1-phosphate-uridylyltransferase-GalU
MKKVRKAIIPAAGLGTRFLPATKAMPKEMLPIVDKPTIQYIIEEAIESGIEDIIIVTGKGKRAIEDHFDHSFELEQNLLEKGKYEMLEKVQASSKINIHYIRQKEPKGLGHAVWCARKFIGNEPFAVLLGDDIVQAETPCLRQLMDQYEGTQSSVIGVQTVPENETHRYGIIDPVEQNDRRYQVRQFVEKPEQGTAPSNLAIMGRYVLTPEIFMFLENQQTGAGGEIQLTDAIQRLNEIQRVFAYDFEGIRYDVGEKFGFIKTTIEMALQHESLREELISYMNELVKKENVHI
>NZ_CP044978.1|WP_103622702.1|566004_566685_-|sugar-transferase
MALTKVSSEAVKEQRMLVAEEINQSVFYLFMKRVIDILGSLCGLIFLFPVLLVIALLIKLEDPKGSILFKQVRVGKDEKEFGMYKFRSMVTDAEERLKDLLEHNEVSGAMFKMKEDPRVTKIGKFIRKTSIDELPQLLNVLKGEMSLVGPRPPLPREVKEYTLYDKQRLLVTPGCTGLWQVTERNSVGFAEMVELDLTYIKKRNIRFDCKLILKTVLVLVGSKDAY
>NZ_CP044978.1|WP_000144436.1|575404_576112_-|ABC-transporter-permease
MTFSMRRFSAIVRKEINDAGKNSQVILMALLPILLAVFYSNMDSIKEFFAGFIIVMTITMVGSYVQAIIIAEEKEKHTLRVLMLSPASPIEVILGKSVLTVFFVLASSFISLVILDTFKGNISMLVIIILIGTLLCVVLGTIVGLLSQNIAQTSILGLPIFIIFIMGPMLQEMVKNEFIIKVVKLLPTNHVMEALQKVIKGEGFIAIQEHILNNTIWTICLIILCIIVYKKKQLD
>NZ_CP044978.1|WP_103622698.1|576111_576954_-|ABC-transporter-ATP-binding-protein
MTLAIEMKDVMKSFSGKTALRNVNIEVKQGEIFGFLGPSGSGKTTTVKILTSQLLHSVGTVRVLGKDITGPSSIDYKRIGILTDNSGLYERLSIYDNLLLFCDLYDCKKERIDEVLTQVNLLDDKKTPVKKLSKGMKQRVTLARAILHKPDILFLDEPTSALDPVNVQNIHKILKGLNEEGTTIFLTTHNMDEAETLCNRIAFLCGGEIVALDTPENLRLQYAKDQIEVVLKGKRKEVVQKDELGANRISEWMKKGELLSIHSYEPTLGDIFIEVTGRGL
>NZ_CP044978.1|WP_078420849.1|577135_578143_-|ATP-binding-cassette-domain-containing-protein
MALLELKQLEKTNQLPAIELKVEKGQCIVLQCNNHTAKVLHRIIIGEEEASTGNVLFEGEAIGKKNYSRIGFCFLKDEAYDRLKVKEYFKFLIGLYESKISIEEVVQSVGLLDKLNVKIEKLSFSEKRRLHIGRMMIHNPDLVILEEPEQNVDIESTIIIRKAIMKMKEQGKAIFITSSFLSDALSLTEDVYILNNDGVKKIEIEQEEVEEVGEEKVIQMIPQMKLERIPAKVNDKIILLDPMEIHFIETQNGVTHIHVREGDFVCALTLSELEARLTGFGFFRCHRSYLVNLQRVREVITWTRNSFSLILDDERKSSIPLSKGRMDELKGVIGL
>NZ_CP044978.1|WP_000672663.1|578240_579260_-|stage-II-sporulation-protein-D
MKFSKPLFITVALLIALVIIVPAALVIPFAKAKVGEETASKTPPAIESIPAPGKVDTAVQVAVYREKQKKVETLPVEEYVTGVVASEMNASFEIEALKAQALAARTFVVQRMLSGGKKNNADVTDTVKDQVYKSKDELKKQWGNNYENNLKKIEEAVSKTAGQVLTYDGKPISASFFSTSNGRTENAADYWGNDYPYLKSVDSPWDQASPKFTSEQTFTVADFQKRLGVKVLADGKVGNIKDLTEGKRVKDVAFQGKTLTGKEVREKLDLRSSDFTWKQQGDKIIVTTKGFGHGVGMSQYGANGMAAEGKKYTDIVAHYYKGVEIKTMNDYEGKLMVKK
>NZ_CP044978.1|WP_000411274.1|579466_580771_-|UDP-N-acetylglucosamine-1-carboxyvinyltransferase
MEKIIVRGGKRLNGTVRVEGAKNAVLPIIAAALLASDGKNVLSEVPVLSDVYTINEVLRHLNAEVVFENNQVTIDSSKELNIEAPFEYVRKMRASVQVMGPLLARNGRARIALPGGCAIGSRPIDQHLKGFEAMGAKVQVGNGFVEAYVEGELKGAKIYLDFPSVGATENIMSAATLAKGTTILENAAKEPEIVDLANFLNAMGAKVRGAGTGTIRIEGVDKLYGANHSIIPDRIEAGTFMVAAAITGGDILIENAVPEHLRSITAKMEEMGVKIIEENEGVRVIGPDKLKAVDIKTMPHPGFPTDMQSQMMALLLQADGTSMITETVFENRFMHVEEFRRMNADIKIEGRSVIMNGPNSLQGAEVAATDLRAAAALILAGLVSEGYTRVTELKHLDRGYVNFHKKLAALGATIERVNEKVEEVKEQEVSDLHA
>NZ_CP044978.1|WP_002005985.1|580810_581521_-|YwmB-family-TATA-box-binding-protein
MKLKLKAILIVALSVVLFLVGYREMKPISDEQKMESMIKALEKNDAKVEKWSWLARETKTISNIHTFQKLLNDVKEKANIQKWEVEQSPDGYKATSYKKLSSYEERVVVTWSKENTKENTFIIFEVSGAKWDPKYVQNMNKIFSEKPIIYTCVQGVLNDKIEGVLQNKTNQVLKDLSARAIEQVEERAFVSVSAYNKKWDDALSTNREKINVQIAIRSTDNKDTIVVGTPIITSEY
>NZ_CP044978.1|WP_000057889.1|581566_581803_-|DUF1146-domain-containing-protein
MAQLLGQQALIAIVSHLLFITITWWALQGIHIERLMKSGKVLQTRVLLILITIAIGTSVSNFFLDYLGYSKSLTYLVK
>NZ_CP044978.1|WP_103622697.1|582005_583526_-|NADH-quinone-oxidoreductase-subunit-NuoN
MDMNTLLSLAWHLMVPEFIILGAAILLSICDLFFKLNHRYVALGAIAAIVLAIVSLITLYSEPAGDILNGSFVLDGFSKGFKTLLLGASALILCTAMSDDKKNPIEDKGEYYYLFLMALLGAMFMASSVDFITLFVGLELLSLSSYILVGIRKKSRASNEAAMKYVISGGIGTAITLFGMSYLYGITGSTNMVDMQKVLTGELASGIQLLLALAFLLLLVGLSFKIATVPFHMWAPDVYEGAATPVTAFLGTISKIAGFLLIIRLFLMIFASVLIQGDMQSLYGHMSIYIAVLASITMIVGNVVALKQYNIKRLFAYSGIAHAGYLLVPLVALSPFTMDSMWFYMLAYMLMNIGAFAIIHGLILQNDEENITIFTGLYKRSPFTAIMMTIFILSLAGIPGTAGFIGKINIFLGALHVEPAHYVLASIMMGTTVVSFVYYFRILQQMFFRTGETEERIRLPLNIKVVMSLCAISIVILGIMPMIGYNFFYEYFPLMKDFFFLGNVVQ
>NZ_CP044978.1|WP_103622696.1|583527_585030_-|NADH-quinone-oxidoreductase-subunit-M
MNDLLLTFFIFSPLLGILLLVLTPKKELRTVRALGLFGTALPFGIAIVLACTYASGKNLSLFDEKMKWIKFGDFTAVDKRWFSIYYELGIDGLSLVMMVLTALLATLAAIAAFSIKRNLKAFYMLLLMLEIGMLGVFAAQNLMLFFIFFEITLPPMFLLIGKWGKLSSEKAAYSYLIYNGIGSAILLIIFSILFAKTGTTNIVELKEILRSVNAEGALVIPSSLQLSVFIAIMIAFAIKLPVFPLHRWMVNVHIEAHPAVVMLHAGVLLKIGAYGIIRFGKGLFPEYFHDVATLIAILGVINLLYGAFLALIQTDFRKVLAYSSISHMGIVLMGLASLNAPGTQGALFQVVSHGLIAALLFFLLGVIEQRFGTSDITALGGLAKSVPVLSGFFLAGGMASLGLPGMSGFVSEFLAFLGLFQGEPVIAAVGVIGIILTAVYVLRATLQVTFGKKEWEAKSDIHGWEYVPVLLLIFCIIAIGVMPEILGDPLQNTLKTLGVK
>NZ_CP044978.1|WP_000568229.1|585026_586889_-|NADH-quinone-oxidoreductase-subunit-L
MIDYAWLIPLFPLVSFLLLIIFGKKIREGSSVLSIFFVFLSFILAVLVLIERFSEASVKHKWVWLRAGDVDISFGFEVTALGALMLFIVTLVSLLVHVYSKGYMKGDERLPTFYAYLGLFTFAMLGLVISTNLLQLYIFWELVGLGSFLLIGFYFFKEEAKAAAKKAFIMTRIGDVGLFIGMILIFWYAGSFEYDAIFRAIYTGDLPPYMITITAILIFIGAMGKSGQFPLHTWLPDAMEGPTPVSALIHAATMVAAGVYLVATMFPLFSASTVAMQTVAIVGAFTAIFAASIGLVQTDIKRVLAYSTVSQLGYMMLALGSAGYVAGIFHLTTHAFFKALLFLAAGSVIHAVHTQNINKMGGLQKKMKVTGTLFLIGTLAISGVPLLSGFFSKDEILAATWMNGNYVLFTLAVIAAFLTAFYMFRLYFLVFTGETKTKEEVHESPRVMTYPMIVLGVLAVVAGYINTPWFGTFLGDWLTKDVGFKVEETHGPVWIMIVATLVSFAGIALAYFIYRKKSISRNWAGGTETSLYNLLKEKYYVDELYNMTVIPITKGIAHVLRLFEVYVVEGIAVLIASVVKGTSNLGSKLQNGNVQVYGTVTAVSLAVLVIILLYTGGDLR

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Click the colored protein region to show detailed information

Crispr_ID: NZ_CP044978_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044978_2

3136600-3136961

Orphan

Consensus_repeat	Method
AACAGGNCCAACNGGAGN	CRT

8 spacers

The CRISPR arrays of NZ_CP044978_2

>merge|NZ_CP044978|2|3136600-3136961|CRT
TGCTACTCCAGGAGGAGGAGCAACAGGCCCAACAGGTCCAACAGGTCCAGGAGGAGGAGCAACAGGTCCAACAGGTCCAACAGGTCCAGGAGGAGGAGCAACAGGTCCAACAGGTCCAACGGGAGACACAGGTCTAGCAGGAGCAACTGGAGCAACAGGTCCAACAGGAGATACTGGAGCAGCAGGCCCAACAGGTCCAACGGGAGACACAGGTCTAGCAGGGAGCAACGGGCCCAACAGGTCCAACGGGGAGACACAGGTCTAGCAGGAGCAACAGGCCCGACAGGAGCAACAGGTCTAGCAGGAGCAACAGGCCCGACAGGAGCAACAGGTCTAACGGGAGCAACTGGAGCAACAGGTGC

>NZ_CP044978|2|1|3136600-3136961|CRT
TGCTACTCCAGGAGGAGG	AGCAACAGGCCCAACAGGTCC
AACAGGTCCAGGAGGAGG	AGCAACAGGTCCAACAGGTCCAACAGGTCCAGGAGGAGGAGCAACAGGTCC
AACAGGTCCAACGGGAGA	CACAGGTCTAGCAGGAGCAACTGGAGC
AACAGGTCCAACAGGAGA	TACTGGAGCAGCAGGCCC
AACAGGTCCAACGGGAGA	CACAGGTCTAGCAGGGAGCAACGGGCCC
AACAGGTCCAACGGGGAG	ACACAGGTCTAGCAGGAGC
AACAGGCCCGACAGGAGC	AACAGGTCTAGCAGGAGC
AACAGGCCCGACAGGAGC	AACAGGTCTAACGGGAGC
AACTGGAGCAACAGGTGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044978.1\|WP_103622403.1\|3139287_3140598_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|366721
NZ_CP044978.1\|WP_151909492.1\|3133637_3134231_-\|collagen-like-triple-helix-repeat-containing-protein	unknown	unknown	gnl\|CDD\|375999
NZ_CP044978.1\|WP_001027671.1\|3125852_3126449_+\|DUF1349-domain-containing-protein	unknown	unknown	gnl\|CDD\|377771
NZ_CP044978.1\|WP_033684418.1\|3130281_3130425_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044978.1\|WP_103622406.1\|3146979_3148263_+\|PTS-sugar-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|224372
NZ_CP044978.1\|WP_001257877.1\|3130849_3131353_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044978.1\|WP_103622405.1\|3146662_3146968_+\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|99906
NZ_CP044978.1\|WP_103622404.1\|3144875_3146435_-\|family-10-glycosylhydrolase	unknown	unknown	gnl\|CDD\|251441
NZ_CP044978.1\|WP_103622399.1\|3126670_3128425_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP044978.1\|WP_000528674.1\|3124931_3125819_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379240
NZ_CP044978.1\|WP_103622400.1\|3128417_3130214_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP044978.1\|WP_001262990.1\|3123983_3124673_+\|MOSC-domain-containing-protein	unknown	unknown	gnl\|CDD\|225167
NZ_CP044978.1\|WP_000008377.1\|3143984_3144818_+\|DUF3974-domain-containing-protein	unknown	unknown	gnl\|CDD\|372489
NZ_CP044978.1\|WP_061457196.1\|3142847_3143960_+\|Tellurite-resistance-protein	unknown	unknown	gnl\|CDD\|377557
NZ_CP044978.1\|WP_001123247.1\|3131729_3132014_-\|DUF4183-domain-containing-protein	unknown	unknown	gnl\|CDD\|372730
NZ_CP044978.1\|WP_000010317.1\|3138888_3139194_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375228
NZ_CP044978.1\|WP_000774115.1\|3132256_3132529_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044978.1\|WP_016124554.1\|3141939_3142533_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|226607
NZ_CP044978.1\|WP_017674054.1\|3138026_3138659_-\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380440
NZ_CP044978.1\|WP_017674052.1\|3140575_3141445_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|236600

Protein	Function_ID	Function_description	E-value
NZ_CP044978.1\|WP_103622403.1\|3139287_3140598_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|366721	pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase. This family consists of various amine oxidases, including maze polyamine oxidase (PAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.	1.54721e-24
NZ_CP044978.1\|WP_151909492.1\|3133637_3134231_-\|collagen-like-triple-helix-repeat-containing-protein	gnl\|CDD\|375999	pfam18573, BclA_C, BclA C-terminal domain. This is the C-terminal domain of BclA (Bacillus collagen-like protein of anthracis) which is expressed on spores of Bacillus species. Trimers of the C-terminal domain (CTD) form the tips of the spore's hair-like nap and are the immunodominant target of vertebrate antibodies and drive trimerization. Structure analysis indicate the C-terminal region of the peptide folding into an all-beta structure with a jelly-fold topology, similar to the first human complement C1q, a member of the tumor necrosis factor (TNF)-like family. The C-terminal globular domain has been shown to be located on the exterior of the exosporium, and therefore is critical in determining the immunogenicity of the spore in a mammalian host.	4.61369e-35
NZ_CP044978.1\|WP_017674052.1\|3140575_3141445_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|236600	PRK09636, PRK09636, RNA polymerase sigma factor SigJ; Provisional.	9.91472e-163
NZ_CP044978.1\|WP_061457196.1\|3142847_3143960_+\|Tellurite-resistance-protein	gnl\|CDD\|377557	pfam05816, TelA, Toxic anion resistance protein (TelA). This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance and plasmid fertility inhibition.	6.80591e-48
NZ_CP044978.1\|WP_103622406.1\|3146979_3148263_+\|PTS-sugar-transporter-subunit-IIC	gnl\|CDD\|224372	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism].	3.50454e-145
NZ_CP044978.1\|WP_103622405.1\|3146662_3146968_+\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|99906	cd05564, PTS_IIB_chitobiose_lichenan, PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	1.27194e-38
NZ_CP044978.1\|WP_000010317.1\|3138888_3139194_+\|hypothetical-protein	gnl\|CDD\|375228	pfam17648, DUF5519, Family of unknown function (DUF5519). This is a family of unknown function.	7.00595e-32
NZ_CP044978.1\|WP_000528674.1\|3124931_3125819_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379240	pfam13527, Acetyltransf_9, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	4.78328e-16
NZ_CP044978.1\|WP_103622400.1\|3128417_3130214_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	0
NZ_CP044978.1\|WP_001262990.1\|3123983_3124673_+\|MOSC-domain-containing-protein	gnl\|CDD\|225167	COG2258, COG2258, Uncharacterized protein conserved in bacteria [Function unknown].	3.19001e-82
NZ_CP044978.1\|WP_000008377.1\|3143984_3144818_+\|DUF3974-domain-containing-protein	gnl\|CDD\|372489	pfam13120, DUF3974, Domain of unknown function (DUF3974). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, and is approximately 130 amino acids in length.	4.0343e-77
NZ_CP044978.1\|WP_103622399.1\|3126670_3128425_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.05437e-167
NZ_CP044978.1\|WP_001123247.1\|3131729_3132014_-\|DUF4183-domain-containing-protein	gnl\|CDD\|372730	pfam13799, DUF4183, Domain of unknown function (DUF4183). This domain of unknown function contains a highly conserved ING motif.	5.40089e-06
NZ_CP044978.1\|WP_103622404.1\|3144875_3146435_-\|family-10-glycosylhydrolase	gnl\|CDD\|251441	pfam02638, GHL10, Glycosyl hydrolase-like 10. This is family of bacterial glycosyl-hydrolase-like proteins falling into the family GHL10 as described above,.	1.21842e-110
NZ_CP044978.1\|WP_017674054.1\|3138026_3138659_-\|cupin-domain-containing-protein	gnl\|CDD\|380440	cd20306, cupin_OxDC-like, Oxalate decarboxylase (OxDC)-like cupin domain. This subfamily contains bacterial and eukaryotic cupin domains of proteins homologous to oxalate decarboxylase (OxDC; EC 4.1.1.2) such as MSMEG_2254, a putative OxDC from Mycobacterium smegmatis. OxDC is a manganese-dependent bicupin that catalyzes the conversion of oxalate to formate and carbon dioxide, utilizing dioxygen as a cofactor. It is evolutionarily related to oxalate oxidase (OxOx or germin; EC 1.2.3.4) which, in contrast, converts oxalate and dioxygen to carbon dioxide and hydrogen peroxide. OxDC is classified as a bicupin because it contains two cupin folds with each domain containing one manganese binding site, with four manganese binding residues (three histidines and one glutamate) conserved as well as a number of hydrophobic residues.	2.62112e-55
NZ_CP044978.1\|WP_016124554.1\|3141939_3142533_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|226607	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only].	2.60871e-37
NZ_CP044978.1\|WP_001027671.1\|3125852_3126449_+\|DUF1349-domain-containing-protein	gnl\|CDD\|377771	pfam07081, DUF1349, Protein of unknown function (DUF1349). This family consists of several hypothetical bacterial proteins but contains one sequence from Saccharomyces cerevisiae. Members of this family are typically around 200 residues in length. The function of this family is unknown.	2.7931e-61

>NZ_CP044978.1|WP_151909492.1|3133637_3134231_-|collagen-like-triple-helix-repeat-containing-protein
MTLFSLTGLRGLPGILDLPEVLALPEVLDLPGSTGPIGSTGSTGSTGPTGSTGPTGSTGSIVTTNSMFANNTSGGPVSVILGGTNIPLSNNHSLGNFTVNASNDVFTIPVTGRYHLTYQVNTTTALLAGTRLLLNASTPISGSIFSPALSTSNYSNNLITNLNAGNTISLQLFGILSVVNLVGGGSTGASLTIIRID
>NZ_CP044978.1|WP_000774115.1|3132256_3132529_-|hypothetical-protein
MADKYKFFILIVTAFFSFFSLIKDFRNTSKSFFWGSFIILTSFMILLIHALDLTQILFYPKQIALEFITIPRKLFLPSVTEAASFPPTLR
>NZ_CP044978.1|WP_001123247.1|3131729_3132014_-|DUF4183-domain-containing-protein
MPIVKPFIAGRRFVSTAATGTAAGADLTFANTDFTDDTGAVTTFPASYAFLTLYINGVIQTGDTITGVTTTAATIVGGAVLDGGTPIAIEFTIT
>NZ_CP044978.1|WP_001257877.1|3130849_3131353_-|hypothetical-protein
MRSSIRKFANFNCEAQAPSTLPALGFAFNATSPQFATLFTPLLLPSTGPNPNITVPVINDTISTGTGIKIQVAGIYQISYTLTISLDNVPVAPEAARFFLTLNSSTNVIAGSGTAVRSNIIGTGEVDVSSGVILINLNPGDLIQIVPVEVIGTVDIRSAALTVAQIR
>NZ_CP044978.1|WP_033684418.1|3130281_3130425_-|hypothetical-protein
MKQGIHPKTVSKHFSYKDMFITLNRYSHVFPRIQGGAVKICSERPFE
>NZ_CP044978.1|WP_103622400.1|3128417_3130214_+|ABC-transporter-ATP-binding-protein
MRNFQGQFANKGGRNTPKMGKAKNAQGTVMRIWNYMDYQKAALMFVIFLVVVTTLLGLLGPYFMGVIIDQYIVPKDLSGTARMCMLLIAIYGVTVLLTWLQTFVMINVALKTIQKIRQDIFEKIQTLSLRFFDVRSQGDLMSRVTNDIDNLNQALTQSVVQIISSALTFIGVTIAMFALNWILAIVTLITVPIMFYVTKKLVAYSGKNFAKRQKDLGELNGFIEEAITGADVTTLYGKEKETVQNFNKINEQLRVSATKADTFSAFIFPSMNFINNLGMGLVIGTGSVMVLNGMTTVGVIAAFINYSRQFSRPLSQFATLMNTIQAAVAGGERVFEIMDEIPEIQNKKDAFVVQNLQGHVALENVSFGYAENKTILKEVSLKAQPGETIALVGPTGSGKTTIINLLTRFYDIQQGQIHIDGKDIKDYDINSLRSKIGVVLQDTYLFAGSIMDNIRYGRLDATDEEVITAAKAASAHSFIKHLPNQYETEIASEGSNLSQGQKQLLAIARAILADADILILDEATSNIDTRTELQIQAGLNNLMRGRTSFVIAHRLKTIEKADQILVIKDGNILERGNHESLMEDRGFYFDLYTSQFKI
>NZ_CP044978.1|WP_103622399.1|3126670_3128425_+|ABC-transporter-ATP-binding-protein
MKSFRKLLQYLKPYMFFAIIGPLFMVLEVAMDLIQPTIMQHIIDVGIANRDLNYVIKMGLLMIGAAALGLVGGLGCMMYSTKAAVNFATDIRKDVFAKIETFSSNNRDSFGTGKLLTIVTNDITSIQSAMTMTLRVLVRGPLLFIGSIIIVFVTARELFPILLVVVPILLLAIILIASKASGTFKKVQEALDKVNTKLQENLSGVRVIKAYVRQKYEIAQFGSVNTNLTKINIRAVQLISLMMPIIMLVVSGGIVATLWIGGEKVFNGTLQVGAILAFINYLNIILMSLMSISMVFIQIARAFPSADRVQQVLNTEVDIISEANAIEPEKIEGNIEFKNVSYSYTKNNEYVLKDISFNIQKGEKVGMIGSTGSGKSTLAKLLPRLYDVDQGEICIDGIDVKTYDLQKLRASIGFVPQKALLFSGSIEENLRYGKENATHDELEVAAASACATEFINKLEESYQYNLTQGATNLSGGQKQRVSIARALVRKPPILILDDSTSAVDAKSEATIQTALKTKYKGTTTLLIASKISSIMDADKILVLDNGELVGNGTHEQLLERSEVYQEIYLSQGGNLHKEGGEEHA
>NZ_CP044978.1|WP_001027671.1|3125852_3126449_+|DUF1349-domain-containing-protein
MNISYIPEHIEQLTIMNVPEYYKINDNHAFIVRSKAETDFWLKTHYGFEVMNGHVFYNEMMTDFQAEVQLRMNPNSKFDQAGLFVMISENCWLKTSLEYIPEGPSHLGAVVTNNGYSDWSTQDYPTEAAKQQLRFRIIRKRGDYTIYVKKRHQWEQIRIAHLMEDIGKEPIKIGFYTCSPSKNKGFETEFLHFTIEEL
>NZ_CP044978.1|WP_000528674.1|3124931_3125819_+|GNAT-family-N-acetyltransferase
MGNVEKLASLLIEEPKREQLFPLFEEVFGITTQTLNDFSDKGYWDDTYKALSFLQEDKVIANVAAFSLPLLINGEKINAAGIQSVMTHPNFRRQGLMTQLMGKMIEEIDKKCECALLFTENPELYTAFGFKVVQEYLMTIPYDKNINNNDSLLKKLDYYNIENRQLIHETIDSSQRLSNSFSTLNFHPSFYLNMYDSEWNEKLYYSEKLDALIVYEVENEKLKLFGVFAPVLPVLDELCGEINERFTEIEFYFSPDQLGVEEVQFTEVQSSKYLMVRSDKELDFKGYKFPVLAEF
>NZ_CP044978.1|WP_001262990.1|3123983_3124673_+|MOSC-domain-containing-protein
MANEYQLLSLNIGLPKEVTYGGKVIHTGINKKQVKEPVYLSFVKFNGDGQADLVHHGGVDKAVCVYTGDHYPYWEKELNQDFVYGAFGENITVSGMREEDVCIGDTFELGQAIVQVTQPRQPCFKLAKKYNIPKLPLYFQETGYTGFYFRVLKEGWVSSVDTLKKLQSDPKGVSVAFANRIMHKEKQNIEGVKRILEVNALSCSWRKSFEKRISGEEINTKERLEGIKD
>NZ_CP044978.1|WP_017674054.1|3138026_3138659_-|cupin-domain-containing-protein
MTANIDYTSPSTNFTYDVNKSNFFRKDAQNYINVLGIKQLNTLENTSLLDIYLSTGNVVEPHIHQNAAELVYCISGSAVVSLLNPFTNQILNLPIKPGQVANIPQAWWHYEIATADNTHLLAIFNAPTPEVIFGSDILRLTPAHMMAHTYCLNEQQWKQALSPIQSTTVIGPPANCNQNRETKNYPTQPLAQQQNPHHQDSYYFPLYWGY
>NZ_CP044978.1|WP_000010317.1|3138888_3139194_+|hypothetical-protein
MSFSEMIRNEVLSWAGVSEKPHRFGGIEINYGKKELGHLHGDKLADLPFPKLKRDELVKQGLVKPHHVLPESGWISYYIKSEEDIPFAIELFRMQYDRIKK
>NZ_CP044978.1|WP_103622403.1|3139287_3140598_+|FAD-dependent-oxidoreductase
MNTFDVAIVGGGLAGLTASIYLAKAGKKVIVLEKSSQFGGRGMTINKNGICMNLGAHALYRGGAAFITFNELGLNLPGGIPSTKAHGIWKGDIFTIPTDFRSILSTPLLSWSAKVQFSRLMIRLGNLDVGEVPKMSLTTWAENEIKDPMVRNIFYALCRTTTYTFAPTIQLASSVLKQIQLSIKEGVLYVDGGWETIITKLRDLANDVGVKFLAKKHVLEIEHYEDKQRIHCVDDEVFEVGTVIVTTPPKEACKIIKGAEGTSLHKWSEQSVPVTVGALDIGLRQLPNPTHQFVLGLDQPIFFTNQSRAAKLSEDGSIAVSLIKYHNPVLEMNHIHEDKEQLESTMELLHPNWKREVVAQQYLPKITVVHDFPHIDRVEKPGPNITEMPGVYVAGDWAGHDEILADAAVASGKRAALHILKQYESEAVHHGNGAVI
>NZ_CP044978.1|WP_017674052.1|3140575_3141445_+|sigma-70-family-RNA-polymerase-sigma-factor
METEQLYEAYQPLLFSLSYRILGSVMDAEDIVQDVFISLNNIEDPQSIENMKAYLCKMATNRSIDKLRSAAHKRNVYVGMWLPEPLVEDSDEPSKSFIMKESLSTAYLLLLQQLSEVERIVFILREVFSYEYEEIASIVDKSSVNCRKIFQRARKSMLEKPKQSKLSTEKMASYVEKFVASLQCGDTEGMLEVLKTDAILKADGGGKVTTAINPIYSADRIIRLFFGIAQRLTEEYTVDFKMVNGIPGVIVTINNKVTYVLSFAFEDEKISNIYMMVNPEKLMHLNVKI
>NZ_CP044978.1|WP_016124554.1|3141939_3142533_+|methyltransferase-domain-containing-protein
MKRMDTLDSLLLQLEQYGEEHDRNKKIREEKLRNISREMGQFLSILVKGCNAKNILEIGTSNGYSTLWLANAVEETNGNVTTVELSSERVGEALVNFEKANLLQRIDVHNQEAGAFLDSQLDHSFDFIFLDSERTQYMWWFEHIKRMLQPKGFLVVDNATSHASELDEFIKMIEEDDTFETVLLAFQKGAFVARKNK
>NZ_CP044978.1|WP_061457196.1|3142847_3143960_+|Tellurite-resistance-protein
MTELEKKEPVSIVKDNNVEVVVDTVIKDEELDELNKEADLYVQKLNSEQNTDLSKVLSQLGDLGDKEQQAAGQTLSALKRPVTAMMNGKNEEIPNTLLELRKVVSELDPNSLKASGMKKIMFKVFKKNPLETYVHKYQSIDKQIEEIIRSLLIGRDNLQEDTVGLEMLKEQSHDKIHALDKQVYLGKKLAGMLEAEKQNPDRQRDIPLINDALEKILVRTRNMQQAKSVLLQSIASVDIIKKNNEKLTEAIRNAITMTQNVVTVSAAIQLALTNQRKTIDAVNATNEAIESMVLSNSQALKQNTEETTKLLENPAISMDKLRESFQNVFAAIEASEKSSERIIESSKKFVIELDTFNDEMKQKLIQRPRK
>NZ_CP044978.1|WP_000008377.1|3143984_3144818_+|DUF3974-domain-containing-protein
MSFIQTVLLLLGTLLLIAFTVVVLVVYFGRKLYFSWTKPYKRAQDSLDKLSNKSIPFLQEFTQHPLFYRWIRTEGKKEQNTLNTLFCASGQRTREQVFSMLPKEKQKKVHVMAKTTKKLTNEDIDVAAMKVKDFLRQETQQTVKPTDLSFYKLYFYDRYPDALNTIQAYKRSINPSLQRTVDDITISVLNALPYYQEQRMFEQQHKLETFLMKDLTAMLSLVVQLPPSQRPEKEEELKIYLENFKKEMEVVERDIRDSIDHDLNVKMRAATEKFKNK
>NZ_CP044978.1|WP_103622404.1|3144875_3146435_-|family-10-glycosylhydrolase
MIVKRLLMICCIVILFIPFSFIPPHFTYAEVNTTYKKHELRAVWIASVLNIDWPSKTGLPIEKQKQEFIRLLDDVKSTGMNAVVVQIKPTADAFYPSNYGPWSEYITGTQGKDPGYDPLAFMIEETHKRNIEFHAWINPYRITMNHTDINRLSNNHPTRQHPDWVVPYGGKLYYNPGIPEVKKFITEGALEIVQNYDIDALHMDDYFYPYKVAGEEFPDQKTYETYNNGRFTNIEDWRRNNVNELVKDLNTAIKQEKSYVKFGISPFGVWRNIADDPTGSNTTAGQRNYDDLYADTREWIQKGYIDYITPQIYWNIGFTPAAYDILVDWWVKETNNKPLHLYIGQAAYKINNNSVPAWSDPEEYPKQIALNRLYPDIKGSMHFSLKDINNNPLGVKDRLSKNIYKHPALIPPMPWLDHDPPKQPTLKGAIPRDEGIAIGIIDNRDNDSAYYAIYRVNGKNEVDIQNPKNLLTTVRKTKLGEIYVDKTAISGETYTYVVTAVDRLHNESVASSHTTVRAK
>NZ_CP044978.1|WP_103622405.1|3146662_3146968_+|PTS-sugar-transporter-subunit-IIB
MKVLFVCSGGMSSAIVVNALKKEAEKNGVNMEVHAIGTNEVEEEVKNGWDVVMVAPQIRHRFASVKKFAEEESIPCGIIPPQAYTPLGGPTLLKTVNELIS
>NZ_CP044978.1|WP_103622406.1|3146979_3148263_+|PTS-sugar-transporter-subunit-IIC
MNKFVTFLDKNLSGPMARLSEQRHLQAIRDGVISALPFIIVGSFFLIVAFPPLPKDSFISVWALKNQTSILIPYRLTMFIMSLYIAFGIGYNLAKSYKLDALSGAQLAVCSLLLTLTPELIDKKGFMLPMTNLGGHGLFVTMIVSILSVEILRFCKKKNVMIKMPEQVPPSVSRSFEALIPAAFVIIIMSLVTVVFSIDLHHVVDKLAAPLVKAGDSYFGVMIPVFLITFFWSFGIHGVSVVGTVARPLWEVYLGKNGEAVASGADQLPFISPEPLYQWFIWIGGSGATLGLVLAMIVFGRSKYSKALSRTCIVPGIFNINEPVIFGLPIVLNPILIIPFIITPLVTATVAYSATAMGFVTPTHIMPPWTLPAPIGAYLATGGDWRAIVLVFVNIAISFLIYLPFFKMYDKNMLEIEKNGDGESVNP

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Crispr_ID: NZ_CP044978_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044978_3

3488000-3488185

Orphan

Consensus_repeat	Method
ACTGGAAGTACTGGTCTCACTGGA	CRISPRCasFinder

3 spacers

The CRISPR arrays of NZ_CP044978_3

>merge|NZ_CP044978|3|3488000-3488185|CRISPRCasFinder
ACTGGGAATACTGGACCAACTGGAAGTACTGGTCTCACTGGAGCAACGGGACCGACCGGACCTTCGGGTAGTTCTGGTGTTACTGGTGACACTGGACCGACCGGAAGTACTGGTCTCACTGGAAACACCGGGCCGACTGGAAACACCGGGCCGGCTGGAAACACTGGACCGACTGGAAACGCTGGA

>NZ_CP044978|3|2|3488000-3488185|CRISPRCasFinder
ACTGGGAATACTGGACCAACTGGA	AGTACTGGTCTCACTGGAGCAACGGGACCGACCGGACCT
TCGGGTAGTTCTGGTGTTACTGGT	GACACTGGACCGACCGGAAGTACTGGTCTC
ACTGGAAACACCGGGCCGACTGGA	AACACCGGGCCGGCTGGAAAC
ACTGGACCGACTGGAAACGCTGGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044978.1\|WP_025689368.1\|3492403_3493111_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|369777
NZ_CP044978.1\|WP_063536578.1\|3490998_3491928_-\|phosphotransferase	unknown	unknown	gnl\|CDD\|270702
NZ_CP044978.1\|WP_063536576.1\|3488855_3489320_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044978.1\|WP_151909493.1\|3491966_3492338_-\|DUF2809-domain-containing-protein	unknown	unknown	gnl\|CDD\|378530
NZ_CP044978.1\|WP_139304601.1\|3475885_3476377_-\|HIT-domain-containing-protein	unknown	unknown	gnl\|CDD\|238608
NZ_CP044978.1\|WP_088338686.1\|3493132_3493486_-\|MmcQ/YjbR-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|225197
NZ_CP044978.1\|WP_063536573.1\|3482579_3483014_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379326
NZ_CP044978.1\|WP_142390968.1\|3494754_3495531_-\|serine-hydrolase	unknown	unknown	gnl\|CDD\|379138
NZ_CP044978.1\|WP_001092372.1\|3480049_3480631_-\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	unknown	unknown	gnl\|CDD\|178955
NZ_CP044978.1\|WP_078420826.1\|3490498_3491002_-\|DNA-topology-modulation-protein	unknown	unknown	gnl\|CDD\|181235
NZ_CP044978.1\|WP_103621991.1\|3476942_3477779_-\|proline/glycine-betaine-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226644
NZ_CP044978.1\|WP_000370606.1\|3477771_3478977_-\|glycine-betaine/L-proline-ABC-transporter-ATP-binding-protein-ProV	unknown	unknown	gnl\|CDD\|226643
NZ_CP044978.1\|WP_103621488.1\|3494386_3494758_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044978.1\|WP_001049982.1\|3481805_3482468_+\|ribose-5-phosphate-isomerase-A	unknown	unknown	gnl\|CDD\|234816
NZ_CP044978.1\|WP_103621989.1\|3480652_3481339_-\|RNA-polymerase-subunit-sigma-70	unknown	unknown	gnl\|CDD\|180663
NZ_CP044978.1\|WP_001125388.1\|3481480_3481801_+\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|223706
NZ_CP044978.1\|WP_103621988.1\|3483140_3484508_-\|chitin-binding-protein	unknown	unknown	gnl\|CDD\|237309
NZ_CP044978.1\|WP_103621990.1\|3479148_3480006_+\|glycine/betaine-ABC-transporter	unknown	unknown	gnl\|CDD\|270357
NZ_CP044978.1\|WP_103621487.1\|3493941_3494358_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP044978.1\|WP_048656187.1\|3493501_3493906_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181

Protein	Function_ID	Function_description	E-value
NZ_CP044978.1\|WP_025689368.1\|3492403_3493111_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	3.9428e-35
NZ_CP044978.1\|WP_063536578.1\|3490998_3491928_-\|phosphotransferase	gnl\|CDD\|270702	cd05153, HomoserineK_II, Type II Homoserine Kinase. This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a Protein Kinase fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine. The Type II homoserine kinase subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K).	1.67722e-19
NZ_CP044978.1\|WP_151909493.1\|3491966_3492338_-\|DUF2809-domain-containing-protein	gnl\|CDD\|378530	pfam10990, DUF2809, Protein of unknown function (DUF2809). Some members in this family of proteins are annotated as yjgA however currently no function for the protein is known.	6.0728e-31
NZ_CP044978.1\|WP_139304601.1\|3475885_3476377_-\|HIT-domain-containing-protein	gnl\|CDD\|238608	cd01277, HINT_subgroup, HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides. This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression.	1.93323e-13
NZ_CP044978.1\|WP_088338686.1\|3493132_3493486_-\|MmcQ/YjbR-family-DNA-binding-protein	gnl\|CDD\|225197	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown].	1.044e-32
NZ_CP044978.1\|WP_063536573.1\|3482579_3483014_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379326	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.3035e-16
NZ_CP044978.1\|WP_142390968.1\|3494754_3495531_-\|serine-hydrolase	gnl\|CDD\|379138	pfam13354, Beta-lactamase2, Beta-lactamase enzyme family. This family is closely related to Beta-lactamase, pfam00144, the serine beta-lactamase-like superfamily, which contains the distantly related pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	9.1106e-14
NZ_CP044978.1\|WP_001092372.1\|3480049_3480631_-\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	1.44627e-134
NZ_CP044978.1\|WP_103621990.1\|3479148_3480006_+\|glycine/betaine-ABC-transporter	gnl\|CDD\|270357	cd13639, PBP2_OpuAC_like, Substrate binding domain of Lactococcus lactis ABC-type transporter OpuA and related proteins; the type 2 periplasmic binding protein fold. This subfamily is part of a high affinity multicomponent binding-protein-dependent transport system specific to betaine compounds for osmoregulation. The periplasmic substrate-binding domain, which is often fused to the permease component of the ATP-binding cassette transporter complex, is involved in uptake of osmoprotectants (also termed compatible solutes) such as glycine betaine and proline betaine. Many microorganisms accumulate these compatible solutes in response to high osmolarity to offset the loss of cell water. This domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.25155e-129
NZ_CP044978.1\|WP_103621991.1\|3476942_3477779_-\|proline/glycine-betaine-ABC-transporter-permease	gnl\|CDD\|226644	COG4176, ProW, ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism].	7.76748e-128
NZ_CP044978.1\|WP_000370606.1\|3477771_3478977_-\|glycine-betaine/L-proline-ABC-transporter-ATP-binding-protein-ProV	gnl\|CDD\|226643	COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism].	0
NZ_CP044978.1\|WP_001049982.1\|3481805_3482468_+\|ribose-5-phosphate-isomerase-A	gnl\|CDD\|234816	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA.	3.8765e-124
NZ_CP044978.1\|WP_103621989.1\|3480652_3481339_-\|RNA-polymerase-subunit-sigma-70	gnl\|CDD\|180663	PRK06704, PRK06704, RNA polymerase subunit sigma-70.	1.2034e-152
NZ_CP044978.1\|WP_001125388.1\|3481480_3481801_+\|(2Fe-2S)-binding-protein	gnl\|CDD\|223706	COG0633, Fdx, Ferredoxin [Energy production and conversion].	3.05087e-11
NZ_CP044978.1\|WP_103621988.1\|3483140_3484508_-\|chitin-binding-protein	gnl\|CDD\|237309	PRK13211, PRK13211, N-acetylglucosamine-binding protein GbpA.	2.83625e-83
NZ_CP044978.1\|WP_078420826.1\|3490498_3491002_-\|DNA-topology-modulation-protein	gnl\|CDD\|181235	PRK08118, PRK08118, DNA topology modulation protein.	5.77479e-117
NZ_CP044978.1\|WP_103621487.1\|3493941_3494358_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	8.83127e-10
NZ_CP044978.1\|WP_048656187.1\|3493501_3493906_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.56198e-07

>NZ_CP044978.1|WP_103621988.1|3483140_3484508_-|chitin-binding-protein
MNNRFLKQLQNMKMNKKSLGAVALTAGIISTTLIPQNAYAHGFVEKPGSRSALCSPTYGALNVNCGSVMYEPQSLEAPKGFPQGGPVDGQIASAGGKFGSILDQQTANRWFKNTITGGENTFTWKYTAPHLTSKWHYYITKKGWNPNKALTRADFEPIGTVQHDGSAASNNLTHKINVPTDRSGYHVILAVWDVADTANAFYNVIDVNLINDVKPDIEAPSIPNGLQTQKVTANIVELTWNASTDNVGVKGYQIFRNGEMIDTVLGTHFIDKKLQPSTEYSYTVKAIDAAGNVSKESAALTVKTTVETPDTEAPTQPKGLHSMGTTASSVDLMWSPSDDNIGVDHYDIYRETEGSMKKIATSNTTSYLDKNLLANTTYKYVVKAVDVAGNESVQSDIFTITTKTESASYEAWDAKKAYKKGDRVLHEGKVYEAVQSYQGNGDPNWIYALSLWKTV
>NZ_CP044978.1|WP_063536573.1|3482579_3483014_+|GNAT-family-N-acetyltransferase
MQSKLITELTDLETAFHIRKEVFVKEQGVPLADEFDTFDEIGEQCKHILVYYHELPVGTGRIRFVDGVGKLERICILKDYRTYGLGKVIIQTLEEIARNEQATKVKLHGQTQAEGFYKKLGYETSSDIFMEDGIPHILMTKVLS
>NZ_CP044978.1|WP_001049982.1|3481805_3482468_+|ribose-5-phosphate-isomerase-A
MNLKQLAGEYAANFVNDGMKIGLGTGSTVYWTIQKLGERVKEGLSFQAVPTSKETEALAHQLNIPLISLNDVQSLDLTIDGADEIDSNLQLIKGGGGALLREKIVASSSKELIIIADESKLVTHLGTFPLPIEIIPFSWKQTENKIQSLGCQTTLRLKNNETYITDNNNMIIDCIFPNHISNPAHLHTQLKMITGVVETGLFISMTSKVIIGAKNGIKEL
>NZ_CP044978.1|WP_001125388.1|3481480_3481801_+|(2Fe-2S)-binding-protein
MPKLTIEGAGTFDVKEGTKLVLAIEDSGVNILHRCGGNARCTTCRVEILAGDFCEASANEKHAMTEKGIEDHLRLSCQMRVHKDIVVRPVLTVENSGLDAGPRPAE
>NZ_CP044978.1|WP_103621989.1|3480652_3481339_-|RNA-polymerase-subunit-sigma-70
MCTKVTHVLKNHIDMNHSNINFLIEQYGELKRYCTFLTKNKWDGEDLAQETVCKVLQKYRNKDICMTLVYKIARNRWLDQIKSKSVHEKIREQITSEEPHENIADLHEMVGKVLSSLNVQQSAILLLKDVFQYSIADIAKVCSVSEGAVKASLFRSRNRLKTVSEEGVEIVEFTDDMEVVVTSIREERPELLTKLLPSIDFTKLPSKQPVLLFNVKQPYSYSCMLCAA
>NZ_CP044978.1|WP_001092372.1|3480049_3480631_-|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP
MNTIPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIYLYINSPGGSTTAGFAILDTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQPIERVAHDTERDYFMTAEEAKAYGIVDDVVTKK
>NZ_CP044978.1|WP_103621990.1|3479148_3480006_+|glycine/betaine-ABC-transporter
MRKKIWFICLALFITMIFTSCNATNANSKGKIKLGVTSWKENIATANMWKVLLEEKGYKVELMYLEKAAIWTGVARGDVDTNLEVWLPVTDKPLNDRYKDDIVLKSKWYEGTGLGLVVPSYMKNINSIEDLNAHKDELDNKIVGIEPGSSLMNLTNKAMKEYDIKLKLVQSSEAAMMSELKKAYTKKKPIAVTLWNPHWGFSEFDLKYLKDPKKVYGEKDDIYYSVRKGFEKDHPDIIKYFDKWKMNDEQLGTLMVELNKTKDPEEAARKWIKNNQALVDEWVKD
>NZ_CP044978.1|WP_000370606.1|3477771_3478977_-|glycine-betaine/L-proline-ABC-transporter-ATP-binding-protein-ProV
MDNTKVRVENVTKVFGKHPQRALSLLKEGKSKSEILKETGMNVGVKKATFEVYSGEIFVIMGLSGSGKSTLVRMLNQLIKPTAGHIYIDGEDIATMGKEELRRVRRTKMSMVFQKFALFPHRTVIQNVAYGLEIQGVPVEEREKKALESLQLVGLDHHKDNYPSQLSGGMQQRVGIARALTNNPDVLLMDESFSALDPLIRKEMQDELLELQDKMEKTIIFITHDLDEALRIGDRIALMKDGEIVQIGTPEEIMMSPANEFVEKFVADVNLGKVITAESILKRPETLLIDRGPRVALQIMRNAGVSTVYVVNKKYEFLGILTADDASKAVQKQWPIADLLLNDIPHVYLDTLLEETYAKMAEMKYPLPVIDEKKRLRGIIKRESVIQALAGNIEEEVKDDE
>NZ_CP044978.1|WP_103621991.1|3476942_3477779_-|proline/glycine-betaine-ABC-transporter-permease
MNSIPRIPLGEWVDSFVASLYEHFEGLFRGFSYIIGGFVDLLTNFLTIIPAILMIIILCFFIWYTTRKLSLVIFTLIGLLFILNINYWAQTMQTLALVLTSVIISIIVGIPIGILASQNERFSKFLKPTLDFMQTMPAFVYLIPAITFFGVGVVPGIIASVIFAMPPTIRFTDLGIRQVPEDLIEAANAFGSTASQKLFKVQLPLATGTIMAGVNQSIMLSLSMVVTASLVGAPGLGVDVYRSVTQVNIGMGFEAGLAIVVIAIILDRITQGFHQKRR
>NZ_CP044978.1|WP_139304601.1|3475885_3476377_-|HIT-domain-containing-protein
MVMNMSTNDQVKLNCFICEKHKGNIIVPGGAIYEDELVYVGHVHWDSEETYLGYVMIDIKRHVPGLAELTDEEAKAFGLITSRVSKALKASEGAEHIYTFVSGNGVPHMHMHIIPRYENTPKEFWSPTEVAKWNGAPYGDAGKIKKLCERLRKYMVSEYAYNK
>NZ_CP044978.1|WP_063536576.1|3488855_3489320_+|hypothetical-protein
MADYFYKDGKKYYKNQAHSDHQKNNCFVETHTIGGSGENLNGNIPISIDLLDTTPQTVFEDFTNNHNKTLIQLFVVGMSAPVQVSILTRRSSVPITTTLQPVQTKIFQVEDFQSLTFTKQEGPASVVSLFIQKTFCICCNDNNDSCNEYYHKCN
>NZ_CP044978.1|WP_078420826.1|3490498_3491002_-|DNA-topology-modulation-protein
MKKIILIGSGGSGKSTLARQLGNKLNIKVHHLDALFWKPNWEGVSKEEQRTVQNELVKEDEWIIDGNYGGTMDIRMNAADTIIFLDIHRTICVYRAFKRIVQYRNKTRPDMGAGCEERFDLQFFKWIWEYPNAKRPAILKELEQLPEEKKVIVLKFPNEVRKFLEHI
>NZ_CP044978.1|WP_063536578.1|3490998_3491928_-|phosphotransferase
MGDILEIVNFWFEDKDVTATEIKANVTKIHCNNKSYILKEKGSIKQLLVEIHVLEQLDEKGVKVQKLVETSNSEKYVFYKEKYYCLYEYVAGSVLEIKDTENLKELGSTIGVEIANLHQALNSVNNNNELVKRDLYKVVYGWALSILEKNEYVHQDIIRKMNQIHTDFKETVHPLRKQIIHRDMHLSNVIFKDNEFQGFIDFELLESNVRVFDLCYCCTSILSELYSDEVLRGKWQHIISTIFEGYNKQNILTREEIQSIWYVMLSIQVIFITYFVQLKDLLKLNEEMFFWIFANKEAIEESIGRIARK
>NZ_CP044978.1|WP_151909493.1|3491966_3492338_-|DUF2809-domain-containing-protein
MNTKRNRVVYALFTIVIIILGLSSRKFSFALPHLLNDYLGDALWALMIFTGLGFLFPKTETKKLAFISLMFCYGIEVSQLYHGEWIDNIRATTLGGLVLGYGFLWSDLVAYTIGVGVGFLLSL
>NZ_CP044978.1|WP_025689368.1|3492403_3493111_-|class-I-SAM-dependent-methyltransferase
MKDSIKDTYDKLASTYKENLDFANPYNSYYERPAMMELIPKELEGKKILDAGCAAGWYTSQFIGRGANVTAIDVSPEMVKAAKENIGEEATFLCHDLQETLPFEDNTYDVIVSSLTLHYLENWNQVFQEFRRVLKPGGELIYSIHHPFMDFTKFPCENYFEKQLLIDTWVKPNITIEVKFFRRSLQDILNETTNYFVLEEIVEPKAIEKMKEVDEKSYYYLNTNPHFLIIKATNK
>NZ_CP044978.1|WP_088338686.1|3493132_3493486_-|MmcQ/YjbR-family-DNA-binding-protein
MNATRAYCLSKRKATEDSPDGWSATCMRLNNKIFAIVNHEEGEKAAITLKCDPEVALRIREDYPETIIPGYHMNKKHWNTVYIHKDIEKEQINKMIDWSYDLVLQSFSKKKQQELMD
>NZ_CP044978.1|WP_048656187.1|3493501_3493906_-|GNAT-family-N-acetyltransferase
MYTYKLQHEQPICAEKIKKLYDSVGWWPERKEIDIEKMLKNSIAIGVWKENELIGFARVVSDGIFRAYIEDVVVHESVRNKGIGEKMLTMLLEEISHIHIVSLFCGEKLIKFYGEQQFQATKQIVMHRNQTGKE
>NZ_CP044978.1|WP_103621487.1|3493941_3494358_-|GNAT-family-N-acetyltransferase
MKHIENGTRIEGEYIKNKVIQYNMSILTDEVKQPMEEVSLIVKNEEGKIFGGVTGTMYFYHLHIDFLWVDESVRHDGYGSQLLHEIEGIAKEKGCRLILLDSFSFQAPEFYKKHGYREYGVVEDHPKGHSQHFFQKRL
>NZ_CP044978.1|WP_103621488.1|3494386_3494758_-|hypothetical-protein
MKRNLKTSTIIILILTIIALEVGIALYDHNLSLDTIYFAAILICIVLLFGTRVSEEKESTSKRGRRKIAVIFWPSILLSIACFAVISYIRVGYVSVSGIIGFSCFVTYGGFVLISILKGKNKM
>NZ_CP044978.1|WP_142390968.1|3494754_3495531_-|serine-hydrolase
METVINKIKEVQSNYVGMAIYSTKDNRIVASYNNELNIPLASAAKLVIGFVVTQMVKENKHNWNDILHHIKFNPHEDSAQLYPHLQGRTSLTLSQAVEVMIACHDSCVAQSVVMHCGGWDAVKMYAQTYFSKIYIQENARDEKNVGELSEVLALFIQTFQGYKSEPELWEPIISGMVRQQGEYEEIPYYHLADMTGGLLTATINIGIIGMFNEFPLLYVMGGKDLPNRRENKEVDEAFAAVLKYIYKEYSESMLGVSD

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Crispr_ID: NZ_CP044978_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044978_4

4042199-4042306

Orphan

Consensus_repeat	Method
CAACTTACAATATATCAACGATTTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP044978_4

>merge|NZ_CP044978|4|4042199-4042306|CRISPRCasFinder
CAACTTACAATATATCAACGATTTTTCAAATATATCTATCACAACTTACAATATATCAACGATTTTTCAAATATATCTATCACAACTTACAGTATATCAACGATTTTT

>NZ_CP044978|4|3|4042199-4042306|CRISPRCasFinder
CAACTTACAATATATCAACGATTTTT	CAAATATATCTATCACAACTTACAATATATCAACGATTTTTCAAATATATCTATCA
CAACTTACAGTATATCAACGATTTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044978.1\|WP_001056354.1\|4034167_4034644_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044978.1\|WP_002178542.1\|4036764_4037523_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|237189
NZ_CP044978.1\|WP_000355451.1\|4046978_4047818_+\|DUF2785-domain-containing-protein	unknown	unknown	gnl\|CDD\|371322
NZ_CP044978.1\|WP_000896307.1\|4040766_4040967_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224393
NZ_CP044978.1\|WP_103622653.1\|4041046_4042012_-\|cytoplasmic-protein	unknown	unknown	unknown
NZ_CP044978.1\|WP_103622649.1\|4047835_4048294_+\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|240033
NZ_CP044978.1\|WP_103622648.1\|4048290_4049289_-\|tryptophan--tRNA-ligase	unknown	unknown	gnl\|CDD\|183592
NZ_CP044978.1\|WP_103622650.1\|4046132_4046855_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP044978.1\|WP_017673883.1\|4045241_4046081_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044978.1\|WP_000411484.1\|4050866_4051988_-\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|223701
NZ_CP044978.1\|WP_103622652.1\|4043096_4044011_-\|phosphotransferase	unknown	unknown	gnl\|CDD\|270703
NZ_CP044978.1\|WP_103622647.1\|4049679_4050837_+\|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	unknown	unknown	gnl\|CDD\|237107
NZ_CP044978.1\|WP_017673888.1\|4034715_4035654_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044978.1\|WP_000958863.1\|4040045_4040240_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044978.1\|WP_000859210.1\|4040419_4040779_+\|DUF3796-domain-containing-protein	unknown	unknown	gnl\|CDD\|372251
NZ_CP044978.1\|WP_000570192.1\|4039231_4039957_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP044978.1\|WP_103622654.1\|4035715_4036426_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044978.1\|WP_000875906.1\|4042341_4043052_-\|noncanonical-pyrimidine-nucleotidase,-YjjG-family	unknown	unknown	gnl\|CDD\|162788
NZ_CP044978.1\|WP_000036870.1\|4037580_4039239_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|374899
NZ_CP044978.1\|WP_103622651.1\|4044132_4045152_-\|tyrosine-protein-phosphatase	unknown	unknown	gnl\|CDD\|379135

Protein	Function_ID	Function_description	E-value
NZ_CP044978.1\|WP_103622651.1\|4044132_4045152_-\|tyrosine-protein-phosphatase	gnl\|CDD\|379135	pfam13350, Y_phosphatase3, Tyrosine phosphatase family. This family is closely related to the pfam00102 and pfam00782 families.	2.07672e-85
NZ_CP044978.1\|WP_002178542.1\|4036764_4037523_-\|SDR-family-oxidoreductase	gnl\|CDD\|237189	PRK12748, PRK12748, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional.	1.40163e-170
NZ_CP044978.1\|WP_000896307.1\|4040766_4040967_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224393	COG1476, COG1476, Predicted transcriptional regulators [Transcription].	5.43432e-25
NZ_CP044978.1\|WP_103622649.1\|4047835_4048294_+\|NUDIX-hydrolase	gnl\|CDD\|240033	cd04677, Nudix_Hydrolase_18, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	4.21795e-58
NZ_CP044978.1\|WP_103622648.1\|4048290_4049289_-\|tryptophan--tRNA-ligase	gnl\|CDD\|183592	PRK12556, PRK12556, tryptophanyl-tRNA synthetase; Provisional.	0
NZ_CP044978.1\|WP_000355451.1\|4046978_4047818_+\|DUF2785-domain-containing-protein	gnl\|CDD\|371322	pfam10978, DUF2785, Protein of unknown function (DUF2785). Some members in this family are annotated as hypothetical membrane spanning proteins however this cannot be confirmed. The family has no known function.	1.69702e-39
NZ_CP044978.1\|WP_000411484.1\|4050866_4051988_-\|AI-2E-family-transporter	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	2.99865e-58
NZ_CP044978.1\|WP_103622647.1\|4049679_4050837_+\|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	gnl\|CDD\|237107	PRK12464, PRK12464, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional.	0
NZ_CP044978.1\|WP_000859210.1\|4040419_4040779_+\|DUF3796-domain-containing-protein	gnl\|CDD\|372251	pfam12676, DUF3796, Protein of unknown function (DUF3796). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 120 amino acids in length.	1.19282e-24
NZ_CP044978.1\|WP_000570192.1\|4039231_4039957_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	8.13216e-90
NZ_CP044978.1\|WP_103622652.1\|4043096_4044011_-\|phosphotransferase	gnl\|CDD\|270703	cd05154, ACAD10_11_N-like, N-terminal domain of Acyl-CoA dehydrogenase (ACAD) 10 and 11, and similar proteins. This subfamily is composed of the N-terminal domains of vertebrate ACAD10 and ACAD11, and similar uncharacterized bacterial and eukaryotic proteins. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 are both significantly expressed in human brain tissues. They contain a long N-terminal domain with similarity to phosphotransferases with a Protein Kinase fold, which is absent in other ACADs. They may exhibit multiple functions in acyl-CoA oxidation pathways. ACAD11 utilizes substrates with carbon chain lengths of 20 to 26, with optimal activity towards C22CoA. ACAD10 may be associated with an increased risk in type II diabetes. The ACAD10/11-like subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K).	4.34515e-06
NZ_CP044978.1\|WP_000875906.1\|4042341_4043052_-\|noncanonical-pyrimidine-nucleotidase,-YjjG-family	gnl\|CDD\|162788	TIGR02254, hydrolase_haloacid_dehalogenase-like_family, noncanonical pyrimidine nucleotidase, YjjG family. This HAD superfamily includes including YjjG from E. coli and YfnB from B. subtilis. YjjG has been shown to act as a house-cleaning enzyme, cleaving nucleotides with non-canonical nucleotide bases. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).	2.35726e-66
NZ_CP044978.1\|WP_000036870.1\|4037580_4039239_-\|ABC-transporter-permease	gnl\|CDD\|374899	pfam16949, ABC_tran_2, Putative ATP-binding cassette. This is a family of putative two component ABC exporters. This is the membrane protein of approximately 573 residues and twelve transmembrane domains. It is encoded adjacent to an ATPase.	2.42022e-06
NZ_CP044978.1\|WP_103622650.1\|4046132_4046855_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	5.38774e-06

>NZ_CP044978.1|WP_103622653.1|4041046_4042012_-|cytoplasmic-protein
MLTFLFELDKNLPQKDEPRYDAYSKGFIEGDVTICASDSVFFQKSCMKVAELGIYLGQWMEQVQHGQNVPMKYETADREEVILGFFYEEDHNQWNVFSSWQEFELQERIATTTLIESVQRYLYELNKELRMIEYPVTFDQYLRGERMMQLSYKRPCDSKADTTPIEVYNGSEQVGVVRGYYKNTLMRVLDFIPKIGSNIIYEIKDSKDNIRVIAKDVSRQRQRRILVMYKDNHDAEHEILVCDGKLLDANFLFTFTYKAEEYVVHKTSFGMGKLLRKGYVIADWNIRLEEDMYYIEMNVYDEDYMQDRYLLLGVFHAVLYG
>NZ_CP044978.1|WP_000896307.1|4040766_4040967_+|helix-turn-helix-transcriptional-regulator
MAFVTKIKEYRAKLNMTQEDLAKSVSVRRETISHLEKGKYNPSLQLAHDIAKALHSTIDEIFIFED
>NZ_CP044978.1|WP_000859210.1|4040419_4040779_+|DUF3796-domain-containing-protein
MKTTWIKYLGFLGFFGFLGFFYEKGLFTMFCFFSFFTSYRTVQHDELFEQIVNKSCRNAFIVTLLTTAIIIFIEMLFPNSTLQEIDIALIFGTLILTFGFSMFFYDKPVDEMEDAPWRS
>NZ_CP044978.1|WP_000958863.1|4040045_4040240_-|hypothetical-protein
MLTWIMIVVLLVVITVIATVLIGRNGDANYSKATKGNIKRLTMIYIILAVVLVVGLGVYIYFKG
>NZ_CP044978.1|WP_000570192.1|4039231_4039957_-|ABC-transporter-ATP-binding-protein
MIEITNVSKSYNGSTYAVKDLSLSVPSGEIFGFLGPNGAGKSTTIKMITGIHGLDKGTITINGKNIMEEPMEAKKTFGYVPDSPDMFLRLKGIEYLNFMADMYEVPKEVRQERIESLAKKFDLYNALSDQIQSYSHGMRQKIVIIGVLVHEPDVWILDEPLTGLDPKSAYILKEMMREHADKGKIVFFSTHVLEVAEKICDRVAIINKGNLQFKGNLDEMRDHFKSNESLEKMFLEMTGNE
>NZ_CP044978.1|WP_000036870.1|4037580_4039239_-|ABC-transporter-permease
MSKIWTLTKVLLKLNYADFITDKKKRWAYVFSFAAILFVGFLLFGSITHAMYEGMIHLGQDPGMIIAMGLAIASIWVFLMSITNILTVFYYSNDIEMLLPLPLKPAQIISAKFLTVLITQYVMSSFILLPIFITYGLKSGAFITYYIYMIFIYLLFPIVPLVLASLLMTVIMRYTNIAKNKDRGNIFIGIVSILFIVGINVFLQWKNKSSFSEDAIADYLANNQSSLLVQMTNYFPTTYFGAVALVENANWKGPLYVIIFAVISFVFFVLFYYIAERTYLKGVIGLSTSTAKKEVISAEGLQKSTVQSSHLKAYVKKEFKTLFRTPQFFLNCIVQTFVMPIMLFFILFVQDGNLKFITEYINNPKTTGFAIGVGLCASLFLMGSNVIATTSFSRDGSSWFVNRYLPVKASDIFFAKAITAWLINVIILAVFGITMAVVAGISPVFMILWFLLSANGLLLINLIGTRWDAQTADIHWDTEQKLFKSRYTTLWNFLANILIALIIVGGVSVLYFFLHVGLWVMFIVLFVMFTIVNYIFIKMLKLGAERILSNIQ
>NZ_CP044978.1|WP_002178542.1|4036764_4037523_-|SDR-family-oxidoreductase
MKKIAIVTGATRLNGIGAAVCKVLAQKGIDIFFTYWPKYDKAMPWGMSDQEPFLLKKEIESYDVRCEMAEINLSQSYSPTRLFYMVSERLGDPSILVNNAVYSTHTRIEELDVEQLDKHYTVNVRATMLLSSLFIKHYSLKTGGSIINLTSGQSVGPMPDELAYAATKGAIEAFTKSVAPVAMEKGITVNAVDPGPTNTGWITEELKHHLVWKFPQGKVGEPVDAARLISFLVSEEAKWVTGQVIHSNGGYS
>NZ_CP044978.1|WP_103622654.1|4035715_4036426_-|hypothetical-protein
MKMKKVAIASITIGTMLTMAACSPSADKETEKKEQVTAQNDGEAKTTSADEASKTTKDTEKETNTSSNEKTDKDAKNTKESSGTESNGKTSTQNENVKTKEKETTGKTNDQTTSGKTTDQSTSTNSDGKTTKDPKKSVAVKTNVKEVVALIDSLDKQLAANPKLETVNKLGKQINEKWDVIEKELEASHPTDSKTIGQSMYPLIVGAEKEKIDINKMKSLTMKTKKDLNQLLTKLS
>NZ_CP044978.1|WP_017673888.1|4034715_4035654_+|hypothetical-protein
MKQIYIICGVLLISLLTIYILFNTSFIQPHPPSIENKREQQTNTVSYGLKDNQGQHINNGSTITSEDNKINVTLSFVHTINENRKYGLIVLEDYEQKPFKIEDTTNEISHYFFDMKPNSSITTKISLHTSPNASELTFLIIKKPEYKLKDNNLNKAAILEDILSMRYSMHPLQKENEKIKLSLIDPDAILKDGLYEPLFVTNREENLQTVFFEKEGKQLILSNGNETNDEMTYAIVAFKDWKQVEIFNNRKVVYTKVAPETRQIFNFTLPSVDQESNLQLVAFPFPYKVSEEDYISQQAFSSFRIVIENENK
>NZ_CP044978.1|WP_001056354.1|4034167_4034644_+|hypothetical-protein
MNMKKSLSVTTLGLAVLGFGFTNNASASEVDTVDKQPVLVDFDTIQSTKTSSVPSLTLAAAPKNDSNISVYTPFFGNPYAVAKSKSTTTEDYVYAKARTFNGDGSLVNTKSNSAKKSSFVSATATNTSIYYGDDYAIGNHTYKLSGYNDVNHETKAFW
>NZ_CP044978.1|WP_000875906.1|4042341_4043052_-|noncanonical-pyrimidine-nucleotidase,-YjjG-family
MKYKVILFDVDDTLLDFPETERHALHNAFVQFDMPTGYNDYLASYKEISNGLWRDLENKMITLSELAVDRFRQLFALHNIDVDAQQFSDVYLENLGKEVHLIEGAVQLCENLQDCKLGIITNGYTKVQQSRIGNSPLCNFFDHIIISEEVGHQKPAREIFDYAFEKFGITDKSSVLMVGDSLTSDMKGGEDYGIDTCWYNPSLKENGTDVNPTYEVESLLQILEIVEVAEEKVASF
>NZ_CP044978.1|WP_103622652.1|4043096_4044011_-|phosphotransferase
MIYTRVKAEGLREKLATILSQEYKELAIQDLKVIGTGVQNIVFQGDSEKGSLAFRVPWEREVENINEDLFNSRISLQKEAELSKYCHSKGIPVPRIHGLHLSTELDFLISDCVYADCTPISACKIGELVSKLHSMPIDGLYYKQNIREPISKYIAERIVKRIEGFNTITNCKINLPNTKTIEYILSTADHVKCLLHMDIRPANLIGYNGEVKAIVDWDNALIGHPLLELMRIAETNEVSWDEFKDGYKNDSIFNVTPHIVSLFYRLDTAVMLANLFIAHLKIKDKGVFYKERVKALHHEIYKNL
>NZ_CP044978.1|WP_103622651.1|4044132_4045152_-|tyrosine-protein-phosphatase
MEQQRNWLQATVERNEDNTLQIKWENNIEEVRIYWSTSPEHIEETGELLATVNGELSYTIENPSENERPYFRLVGSNGQAVTVAERRLPLQGAFNFRDMGGYETTEGRKVKWGKLYRSEELAGLTEWDIAYLQKSGLKLICDYRTDFEVKHKPNPEITGARQVCLPVMQDLAKDLNINEFFQVGDLSMLGKPGEYLVKMNQDFVSGNEAFVSFLNLAQNPENLPLVNHCTAGKDRTGFGSALLLLLLGVPEKTVMEDYLLSNGFREKLNEKMMAFLGAKLQNDESRAILGAMFEARAEYLQAAIGEIQKQYESVEAYAERALGFTKESLEEMKELLLED
>NZ_CP044978.1|WP_017673883.1|4045241_4046081_-|hypothetical-protein
MLKQSMHSFVLLYPNVLLEGWNVEKVSERYEGEKWGTFWFQVVTPTGMFRVKEFFLDIMEPVFPDSCISQAKGDCFQYKGLVYWKGINYKGKESYVTSIWKTQVEISVDHGYVNQDEMERFLFELQPVNMELGKTILHTSFHLLSFQAKRSEMGEIGRCREWNAPDDVSYVNLLIHEKLNRKLESVGFGNDETQYVYWDEVNKLYALWVCRHKNKAYYPISSWTMNYGQKQIINGLEFYPHPNRGTVVYEDLGNEQIAYVFRGNPCTNFEQVKELFACL
>NZ_CP044978.1|WP_103622650.1|4046132_4046855_-|GNAT-family-N-acetyltransferase
MTTIEQLEKHFKIRRSASSIMIKENNAEVFTEEQLEEMMQYCVAEAKKDGLEKLHFEISSKSPNYDVYKRCFETYSFEYVTENMIVFKDIYEVEDVESEIDFKLIEEVGEEGFYSLWNEAMGEPVAHDQFVHMMLEEIGEQWKEHCLIASVGEEPIGIVIPHIERGALEEGKLMCFAVTPNMRNKGYEAALFAGAMFVLKEIGASYYIGETNVQNEWMKDVFEKNGCQLLSSTERYVRKF
>NZ_CP044978.1|WP_000355451.1|4046978_4047818_+|DUF2785-domain-containing-protein
MDITALQQQLELIQQNDYTQLQHIDVNELTLNMLQYIGTTDSYVRYQLIYKCFAHFIHHEFLMDDQLKLLLQTCLSDEYLYCDIYSPHTDGVFTRSYTVSLIALILQFANSHYFCTEEDIEEIKNKLITYTNLETDFRGYIENKGWAHCLAHVSDAFTEIVHNTYTTFEWYEELIHCLLNKIFIPSDLFHNNEDERIVTPLLAMLYHDFPQNDLISIIHKKIKRLPQIRKRLSLNEYCILCANIKTFLRTLFFRTKDDHNLAFTARKTERMLKELPNYY
>NZ_CP044978.1|WP_103622649.1|4047835_4048294_+|NUDIX-hydrolase
MGYIEDMRNLVGNHPLILIGSHAIILNEKDEVLLQLRTDFNRWGIIGGALEYNETLEDALKREVFEETGLIIKNPELFRTYSGPDFFQIYPNGDQVHGVLVVYICREFYGELLCNQSESKELRFFSLNELPNNLPPVIEKIITDYLKKQGNA
>NZ_CP044978.1|WP_103622648.1|4048290_4049289_-|tryptophan--tRNA-ligase
MSEKIMLTGIKPTGYPHLGNYIGAIKPALQMSKNNKGKALYFIADYHALNAVHDSEKFSSYTKEVAATWLSLGLGEDVVFYRQTEVSEILELAWILACLTPKGLMNRAHAYKAKVEQNKEAGLEVDAGVNMGLYTYPILMAADILLFQATHVPVGKDQIQHIEIARDIATYFNHTFGTTFTLPEYVVQEEGAILPGLDGRKMSKSYGNVIPLFAEKEKLRKLIFKIKTDSSLPNEPKELETLFMIYKEFAMEDEIQSMREKYETGIRWGDVKKELFRVVDRELAGPREKYTMYMNEPNLLYEALENGAEKARAIAKVNLAEIKKRIGFERER
>NZ_CP044978.1|WP_103622647.1|4049679_4050837_+|1-deoxy-D-xylulose-5-phosphate-reductoisomerase
MVKYISILGSTGSIGTSALDVVSAHPEHFKIVGLTANYNIDLLEQQIKTFQPRIVSVATKDLADKLRTRISANTKITHGTDGLIAVATHPDSNLVLSSVVGVSGLLPTIEALKAKKDIAIANKETLVAAGHIVTELAKQNGCRLIPVDSEHSAIFQCLNGENNKEIEKLIVTASGGAFRDKTREEMQTLQAKDALKHPNWLMGAKLTIDSATLMNKGFEVMEARWLFDIPYEKIDVMIHKESIIHSLVEFIDGLVMAQLGAPDMRMPIQYAFHYPTRLPSSYEKLNLLEIGSLHFEKPDLEKFPCLQYAYECGKIGGTTPAVLNAANEIANALFLKNEIAFFDIEKTIYKTVEAHHNVKNPSLDAILEADQWARQYANELLIKKR
>NZ_CP044978.1|WP_000411484.1|4050866_4051988_-|AI-2E-family-transporter
MEKINIRKRDKLRKFFREQNYLAVLLGFALLFINILLLTKISFVFTPFIVFLKTIFFPVLLAGVLFYILHPFVSLLEKKGVSRIVSIASIYLIVLGLFVFLVVTVIPIIKDQIDALIDNLPYFGHEIEQAARRFGESNLLGKIQENLNINVANMVKEYTVDFTKSLSSVTGNVTGFLSTVTEVVLTFVMVPFILFYLLKDGEQLPNHFLKFISEQRQPAAMRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILAMIVNIVPYVGPIIAITPALIIAFIDSPAMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIHPITIIFIILTAGNLFGIMGIILAIPGYAILKVLVTHGYRFVKLNT

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP044978_4	4.1\|4042225\|56\|NZ_CP044978\|CRISPRCasFinder	4042225-4042280	56	NZ_CP044978.1	4042184-4042239	1	0.982
NZ_CP044978_4	4.1\|4042225\|56\|NZ_CP044978\|CRISPRCasFinder	4042225-4042280	56	NZ_CP044978.1	5047459-5047514	1	0.982
NZ_CP044978_4	4.1\|4042225\|56\|NZ_CP044978\|CRISPRCasFinder	4042225-4042280	56	NZ_CP044978.1	5047500-5047555	1	0.982
NZ_CP044978_4	4.1\|4042225\|56\|NZ_CP044978\|CRISPRCasFinder	4042225-4042280	56	NZ_CP044978.1	268865-268920	2	0.964

1. spacer 4.1|4042225|56|NZ_CP044978|CRISPRCasFinder matches to position: 4042184-4042239, mismatch: 1, identity: 0.982

caaatatatctatcacaacttacaatatatcaacgatttttcaaatatatctatca	CRISPR spacer
caaatatatctatcgcaacttacaatatatcaacgatttttcaaatatatctatca	Protospacer
**************.*****************************************

2. spacer 4.1|4042225|56|NZ_CP044978|CRISPRCasFinder matches to position: 5047459-5047514, mismatch: 1, identity: 0.982

caaatatatctatcacaacttacaatatatcaacgatttttcaaatatatctatca	CRISPR spacer
caaatatatctatcacaacttgcaatatatcaacgatttttcaaatatatctatca	Protospacer
*********************.**********************************

3. spacer 4.1|4042225|56|NZ_CP044978|CRISPRCasFinder matches to position: 5047500-5047555, mismatch: 1, identity: 0.982

caaatatatctatcacaacttacaatatatcaacgatttttcaaatatatctatca	CRISPR spacer
caaatatatctatcacaacttgcaatatatcaacgatttttcaaatatatctatca	Protospacer
*********************.**********************************

4. spacer 4.1|4042225|56|NZ_CP044978|CRISPRCasFinder matches to position: 268865-268920, mismatch: 2, identity: 0.964

caaatatatctatcacaacttacaatatatcaacgatttttcaaatatatctatca	CRISPR spacer
caaatatatctatcataacttgcaatatatcaacgatttttcaaatatatctatca	Protospacer
***************.*****.**********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP044978_2	2.1\|3136618\|21\|NZ_CP044978\|CRT	3136618-3136638	21	MN693263	Marine virus AFVG_25M296, complete genome	12051-12071	1	0.952
NZ_CP044978_2	2.1\|3136618\|21\|NZ_CP044978\|CRT	3136618-3136638	21	MN693263	Marine virus AFVG_25M296, complete genome	13692-13712	1	0.952
NZ_CP044978_2	2.1\|3136618\|21\|NZ_CP044978\|CRT	3136618-3136638	21	MN693383	Marine virus AFVG_25M295, complete genome	21445-21465	1	0.952
NZ_CP044978_2	2.1\|3136618\|21\|NZ_CP044978\|CRT	3136618-3136638	21	MN693383	Marine virus AFVG_25M295, complete genome	19805-19825	1	0.952
NZ_CP044978_4	4.1\|4042225\|56\|NZ_CP044978\|CRISPRCasFinder	4042225-4042280	56	NZ_CP050185	Bacillus thuringiensis strain HER1410 plasmid pLUSID2, complete sequence	93760-93815	3	0.946
NZ_CP044978_2	2.3\|3136726\|27\|NZ_CP044978\|CRT	3136726-3136752	27	CP037991	Bacillus mycoides strain TH26 plasmid unnamed1, complete sequence	472800-472826	4	0.852
NZ_CP044978_2	2.3\|3136726\|27\|NZ_CP044978\|CRT	3136726-3136752	27	MN694632	Marine virus AFVG_250M389, complete genome	26322-26348	5	0.815
NZ_CP044978_2	2.3\|3136726\|27\|NZ_CP044978\|CRT	3136726-3136752	27	NZ_CP049317	Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence	1292006-1292032	6	0.778
NZ_CP044978_2	2.3\|3136726\|27\|NZ_CP044978\|CRT	3136726-3136752	27	NZ_CP049157	Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence	350645-350671	6	0.778
NZ_CP044978_1	1.1\|574406\|31\|NZ_CP044978\|CRISPRCasFinder	574406-574436	31	JX238501	Bacillus phage phiAGATE, complete genome	124559-124589	8	0.742
NZ_CP044978_3	3.2\|3488087\|30\|NZ_CP044978\|CRISPRCasFinder	3488087-3488116	30	CP011075	Brevibacillus laterosporus strain B9 plasmid unnamed1, complete sequence	733417-733446	8	0.733
NZ_CP044978_3	3.2\|3488087\|30\|NZ_CP044978\|CRISPRCasFinder	3488087-3488116	30	MH617454	Microviridae sp. isolate ctig683, complete genome	1051-1080	8	0.733
NZ_CP044978_1	1.2\|574460\|34\|NZ_CP044978\|CRISPRCasFinder	574460-574493	34	MN812210	Flavobacterium phage vB_FspS_hemulen9-1, complete genome	22854-22887	9	0.735
NZ_CP044978_1	1.2\|574460\|34\|NZ_CP044978\|CRISPRCasFinder	574460-574493	34	MN812215	Flavobacterium phage vB_FspS_lillamy9-4, complete genome	22191-22224	9	0.735
NZ_CP044978_1	1.2\|574460\|34\|NZ_CP044978\|CRISPRCasFinder	574460-574493	34	MN812216	Flavobacterium phage vB_FspS_lillamy9-5, complete genome	22191-22224	9	0.735
NZ_CP044978_1	1.2\|574460\|34\|NZ_CP044978\|CRISPRCasFinder	574460-574493	34	NC_048835	Flavobacterium phage vB_FspS_lillamy9-1, complete genome	22191-22224	9	0.735
NZ_CP044978_1	1.2\|574460\|34\|NZ_CP044978\|CRISPRCasFinder	574460-574493	34	MN812213	Flavobacterium phage vB_FspS_lillamy9-2, complete genome	22191-22224	9	0.735
NZ_CP044978_1	1.2\|574460\|34\|NZ_CP044978\|CRISPRCasFinder	574460-574493	34	MN812230	Flavobacterium phage vB_FspS_sniff9-2, complete genome	21831-21864	9	0.735
NZ_CP044978_1	1.2\|574460\|34\|NZ_CP044978\|CRISPRCasFinder	574460-574493	34	MN812209	Flavobacterium phage vB_FspS_hemulen6-2, complete genome	22983-23016	9	0.735
NZ_CP044978_1	1.2\|574460\|34\|NZ_CP044978\|CRISPRCasFinder	574460-574493	34	MN812218	Flavobacterium phage vB_FspS_lillamy9-7, complete genome	21454-21487	9	0.735
NZ_CP044978_1	1.2\|574460\|34\|NZ_CP044978\|CRISPRCasFinder	574460-574493	34	MN812233	Flavobacterium phage vB_FspS_snork9-1, complete genome	22007-22040	9	0.735
NZ_CP044978_1	1.2\|574460\|34\|NZ_CP044978\|CRISPRCasFinder	574460-574493	34	MN812219	Flavobacterium phage vB_FspS_morran9-1, complete genome	22308-22341	9	0.735
NZ_CP044978_1	1.2\|574460\|34\|NZ_CP044978\|CRISPRCasFinder	574460-574493	34	MN812217	Flavobacterium phage vB_FspS_lillamy9-6, complete genome	21930-21963	9	0.735
NZ_CP044978_1	1.2\|574460\|34\|NZ_CP044978\|CRISPRCasFinder	574460-574493	34	NC_048840	Flavobacterium phage vB_FspS_snork6-1, complete genome	22137-22170	9	0.735
NZ_CP044978_1	1.2\|574460\|34\|NZ_CP044978\|CRISPRCasFinder	574460-574493	34	NC_048839	Flavobacterium phage vB_FspS_sniff9-1, complete genome	22057-22090	9	0.735
NZ_CP044978_1	1.2\|574460\|34\|NZ_CP044978\|CRISPRCasFinder	574460-574493	34	NC_048842	Flavobacterium phage vB_FspS_stinky9-1, complete genome	21673-21706	9	0.735
NZ_CP044978_1	1.2\|574460\|34\|NZ_CP044978\|CRISPRCasFinder	574460-574493	34	MN812232	Flavobacterium phage vB_FspS_snork6-2, complete genome	21655-21688	9	0.735
NZ_CP044978_1	1.2\|574460\|34\|NZ_CP044978\|CRISPRCasFinder	574460-574493	34	MN812208	Flavobacterium phage vB_FspS_hemulen6-1, complete genome	22983-23016	9	0.735
NZ_CP044978_1	1.2\|574460\|34\|NZ_CP044978\|CRISPRCasFinder	574460-574493	34	NZ_HG813246	Staphylococcus epidermidis PM221 plasmid 1, complete sequence	47181-47214	11	0.676
NZ_CP044978_1	1.2\|574460\|34\|NZ_CP044978\|CRISPRCasFinder	574460-574493	34	NZ_HG813246	Staphylococcus epidermidis PM221 plasmid 1, complete sequence	47565-47598	11	0.676
NZ_CP044978_1	1.2\|574460\|34\|NZ_CP044978\|CRISPRCasFinder	574460-574493	34	NZ_HG813246	Staphylococcus epidermidis PM221 plasmid 1, complete sequence	47949-47982	11	0.676
NZ_CP044978_1	1.2\|574460\|34\|NZ_CP044978\|CRISPRCasFinder	574460-574493	34	NZ_HG813246	Staphylococcus epidermidis PM221 plasmid 1, complete sequence	48333-48366	11	0.676
NZ_CP044978_1	1.2\|574460\|34\|NZ_CP044978\|CRISPRCasFinder	574460-574493	34	NZ_HG813246	Staphylococcus epidermidis PM221 plasmid 1, complete sequence	48717-48750	11	0.676
NZ_CP044978_1	1.2\|574460\|34\|NZ_CP044978\|CRISPRCasFinder	574460-574493	34	NZ_HG813246	Staphylococcus epidermidis PM221 plasmid 1, complete sequence	49101-49134	11	0.676
NZ_CP044978_1	1.2\|574460\|34\|NZ_CP044978\|CRISPRCasFinder	574460-574493	34	NZ_HG813246	Staphylococcus epidermidis PM221 plasmid 1, complete sequence	49485-49518	11	0.676

1. spacer 2.1|3136618|21|NZ_CP044978|CRT matches to MN693263 (Marine virus AFVG_25M296, complete genome) position: , mismatch: 1, identity: 0.952

agcaacaggcccaacaggtcc	CRISPR spacer
cgcaacaggcccaacaggtcc	Protospacer
 ********************

2. spacer 2.1|3136618|21|NZ_CP044978|CRT matches to MN693263 (Marine virus AFVG_25M296, complete genome) position: , mismatch: 1, identity: 0.952

agcaacaggcccaacaggtcc	CRISPR spacer
agcaacaggcccaacagggcc	Protospacer
****************** **

3. spacer 2.1|3136618|21|NZ_CP044978|CRT matches to MN693383 (Marine virus AFVG_25M295, complete genome) position: , mismatch: 1, identity: 0.952

agcaacaggcccaacaggtcc	CRISPR spacer
cgcaacaggcccaacaggtcc	Protospacer
 ********************

4. spacer 2.1|3136618|21|NZ_CP044978|CRT matches to MN693383 (Marine virus AFVG_25M295, complete genome) position: , mismatch: 1, identity: 0.952

agcaacaggcccaacaggtcc	CRISPR spacer
agcaacaggcccaacagggcc	Protospacer
****************** **

5. spacer 4.1|4042225|56|NZ_CP044978|CRISPRCasFinder matches to NZ_CP050185 (Bacillus thuringiensis strain HER1410 plasmid pLUSID2, complete sequence) position: , mismatch: 3, identity: 0.946

caaatatatctatcacaacttacaatatatcaacgatttttcaaatatatctatca	CRISPR spacer
cgaatatatctatcataacttacaatatatcaacgatttttaaaatatatctatca	Protospacer
*.*************.************************* **************

6. spacer 2.3|3136726|27|NZ_CP044978|CRT matches to CP037991 (Bacillus mycoides strain TH26 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.852

cacaggtctagcaggagcaactggagc	CRISPR spacer
aacaggtctaacaggagcaacgggagt	Protospacer
 *********.********** ****.

7. spacer 2.3|3136726|27|NZ_CP044978|CRT matches to MN694632 (Marine virus AFVG_250M389, complete genome) position: , mismatch: 5, identity: 0.815

cacaggtctagcaggagcaactggagc	CRISPR spacer
aaaaggtatagcaggagcaactagaga	Protospacer
 * **** **************.***

8. spacer 2.3|3136726|27|NZ_CP044978|CRT matches to NZ_CP049317 (Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence) position: , mismatch: 6, identity: 0.778

cacaggtctagcaggagcaactggagc	CRISPR spacer
agaagggcgagcaggagcaactggagg	Protospacer
 . *** * *****************

9. spacer 2.3|3136726|27|NZ_CP044978|CRT matches to NZ_CP049157 (Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence) position: , mismatch: 6, identity: 0.778

cacaggtctagcaggagcaactggagc	CRISPR spacer
agaagggcgagcaggagcaactggagg	Protospacer
 . *** * *****************

10. spacer 1.1|574406|31|NZ_CP044978|CRISPRCasFinder matches to JX238501 (Bacillus phage phiAGATE, complete genome) position: , mismatch: 8, identity: 0.742

ttcttcttttttgtcactagttgaaccgctt	CRISPR spacer
ctaaccttttttgccactagttaaaccgccc	Protospacer
.*  .********.********.******..

11. spacer 3.2|3488087|30|NZ_CP044978|CRISPRCasFinder matches to CP011075 (Brevibacillus laterosporus strain B9 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

gacactggaccgaccggaagtactggtctc	CRISPR spacer
gctactggacctaccggaggtactggcgct	Protospacer
* .******** ******.*******. ..

12. spacer 3.2|3488087|30|NZ_CP044978|CRISPRCasFinder matches to MH617454 (Microviridae sp. isolate ctig683, complete genome) position: , mismatch: 8, identity: 0.733

gacactggaccgaccggaagtactggtctc	CRISPR spacer
caaactggaccgaccggaacaactggagct	Protospacer
 * ****************  *****  ..

13. spacer 1.2|574460|34|NZ_CP044978|CRISPRCasFinder matches to MN812210 (Flavobacterium phage vB_FspS_hemulen9-1, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

14. spacer 1.2|574460|34|NZ_CP044978|CRISPRCasFinder matches to MN812215 (Flavobacterium phage vB_FspS_lillamy9-4, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

15. spacer 1.2|574460|34|NZ_CP044978|CRISPRCasFinder matches to MN812216 (Flavobacterium phage vB_FspS_lillamy9-5, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

16. spacer 1.2|574460|34|NZ_CP044978|CRISPRCasFinder matches to NC_048835 (Flavobacterium phage vB_FspS_lillamy9-1, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

17. spacer 1.2|574460|34|NZ_CP044978|CRISPRCasFinder matches to MN812213 (Flavobacterium phage vB_FspS_lillamy9-2, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

18. spacer 1.2|574460|34|NZ_CP044978|CRISPRCasFinder matches to MN812230 (Flavobacterium phage vB_FspS_sniff9-2, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

19. spacer 1.2|574460|34|NZ_CP044978|CRISPRCasFinder matches to MN812209 (Flavobacterium phage vB_FspS_hemulen6-2, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

20. spacer 1.2|574460|34|NZ_CP044978|CRISPRCasFinder matches to MN812218 (Flavobacterium phage vB_FspS_lillamy9-7, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

21. spacer 1.2|574460|34|NZ_CP044978|CRISPRCasFinder matches to MN812233 (Flavobacterium phage vB_FspS_snork9-1, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

22. spacer 1.2|574460|34|NZ_CP044978|CRISPRCasFinder matches to MN812219 (Flavobacterium phage vB_FspS_morran9-1, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

23. spacer 1.2|574460|34|NZ_CP044978|CRISPRCasFinder matches to MN812217 (Flavobacterium phage vB_FspS_lillamy9-6, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

24. spacer 1.2|574460|34|NZ_CP044978|CRISPRCasFinder matches to NC_048840 (Flavobacterium phage vB_FspS_snork6-1, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

25. spacer 1.2|574460|34|NZ_CP044978|CRISPRCasFinder matches to NC_048839 (Flavobacterium phage vB_FspS_sniff9-1, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

26. spacer 1.2|574460|34|NZ_CP044978|CRISPRCasFinder matches to NC_048842 (Flavobacterium phage vB_FspS_stinky9-1, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

27. spacer 1.2|574460|34|NZ_CP044978|CRISPRCasFinder matches to MN812232 (Flavobacterium phage vB_FspS_snork6-2, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

28. spacer 1.2|574460|34|NZ_CP044978|CRISPRCasFinder matches to MN812208 (Flavobacterium phage vB_FspS_hemulen6-1, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

29. spacer 1.2|574460|34|NZ_CP044978|CRISPRCasFinder matches to NZ_HG813246 (Staphylococcus epidermidis PM221 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.676

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
tatgtcttctgtttttgtttctggttccccagct	Protospacer
. *************  *********.* .. ..

30. spacer 1.2|574460|34|NZ_CP044978|CRISPRCasFinder matches to NZ_HG813246 (Staphylococcus epidermidis PM221 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.676

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
tatgtcttctgtttttgtttctggttccccagct	Protospacer
. *************  *********.* .. ..

31. spacer 1.2|574460|34|NZ_CP044978|CRISPRCasFinder matches to NZ_HG813246 (Staphylococcus epidermidis PM221 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.676

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
tatgtcttctgtttttgtttctggttccccagct	Protospacer
. *************  *********.* .. ..

32. spacer 1.2|574460|34|NZ_CP044978|CRISPRCasFinder matches to NZ_HG813246 (Staphylococcus epidermidis PM221 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.676

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
tatgtcttctgtttttgtttctggttccccagct	Protospacer
. *************  *********.* .. ..

33. spacer 1.2|574460|34|NZ_CP044978|CRISPRCasFinder matches to NZ_HG813246 (Staphylococcus epidermidis PM221 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.676

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
tatgtcttctgtttttgtttctggttccccagct	Protospacer
. *************  *********.* .. ..

34. spacer 1.2|574460|34|NZ_CP044978|CRISPRCasFinder matches to NZ_HG813246 (Staphylococcus epidermidis PM221 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.676

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
tatgtcttctgtttttgtttctggttccccagct	Protospacer
. *************  *********.* .. ..

35. spacer 1.2|574460|34|NZ_CP044978|CRISPRCasFinder matches to NZ_HG813246 (Staphylococcus epidermidis PM221 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.676

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
tatgtcttctgtttttgtttctggttccccagct	Protospacer
. *************  *********.* .. ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1043206 : 1051154

uncultured_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000917311.1\|1043206_1043491_+	co-chaperone GroES	A0A221S3C8	uncultured_virus	1.2e-20	54.8
WP_001029993.1\|1043529_1045164_+	chaperonin GroEL	A0A219YK78	uncultured_virus	1.5e-157	58.0
WP_000743909.1\|1045570_1047109_+	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	8.8e-22	31.7
WP_000833082.1\|1047493_1048819_+	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	6.4e-45	30.1
WP_000929885.1\|1048963_1049665_+	response regulator transcription factor	W8CYM9	Bacillus_phage	7.3e-40	36.9
WP_000719223.1\|1049648_1051154_+	aminopeptidase AmpS	W8CYF6	Bacillus_phage	5.4e-32	30.3

DBSCAN-SWA_2

1096765 : 1105741

Synechococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000625682.1\|1096765_1098073_+	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	4.9e-21	25.3
WP_001170544.1\|1098161_1098881_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	G8EYA2	Synechococcus_phage	4.0e-49	44.3
WP_000278823.1\|1098873_1099128_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_151909486.1\|1099967_1100408_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_000055563.1\|1100391_1102611_+	phosphoribosylformylglycinamidine synthase II	A6N228	Microbacterium_phage	3.0e-164	41.3
WP_000879025.1\|1102595_1104011_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.3e-55	35.4
WP_001262439.1\|1104116_1105157_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3F760	Synechococcus_phage	1.2e-67	45.9
WP_000088589.1\|1105153_1105741_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	9.1e-28	37.4

DBSCAN-SWA_3

2459096 : 2475864

Brevibacillus_phage(100.0%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_098584586.1\|2459096_2459549_+	hypothetical protein	A0A0K2CP30	Brevibacillus_phage	1.9e-25	45.8
WP_000077128.1\|2459548_2460637_+	hypothetical protein	A0A0K2CNX7	Brevibacillus_phage	1.2e-94	55.8
WP_084064877.1\|2460869_2461340_+	DNA polymerase III subunit gamma/tau	A0A0K2CPC8	Brevibacillus_phage	1.4e-34	52.9
WP_000743719.1\|2461426_2461669_+	hypothetical protein	A0A0K2CP74	Brevibacillus_phage	2.1e-18	55.0
WP_103622761.1\|2461741_2467057_+\|tail	phage tail tape measure protein	A0A0K2CPN3	Brevibacillus_phage	4.4e-145	26.3
WP_000068593.1\|2467115_2467733_+	S-layer homology domain-containing protein	A0A0K2CPJ2	Brevibacillus_phage	1.4e-71	60.7
WP_001126624.1\|2467735_2468809_+	hypothetical protein	A0A0K2CP35	Brevibacillus_phage	4.1e-74	40.3
WP_098584024.1\|2468821_2472013_+	M23 family metallopeptidase	A0A0K2CNY2	Brevibacillus_phage	3.7e-06	50.0
WP_000057630.1\|2472091_2472808_+	hypothetical protein	NA	NA	NA	NA
WP_000007798.1\|2472822_2473263_+	hypothetical protein	NA	NA	NA	NA
WP_103622760.1\|2473278_2475864_+	hypothetical protein	A0A0K2CPJ7	Brevibacillus_phage	2.1e-31	43.5

DBSCAN-SWA_4

2488834 : 2503399

Brevibacillus_phage(55.56%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_103622756.1\|2488834_2489956_+	hypothetical protein	A0A0K2CPP1	Brevibacillus_phage	5.6e-66	37.0
WP_098584151.1\|2489967_2490699_+	hypothetical protein	NA	NA	NA	NA
WP_006916875.1\|2490777_2491221_+	hypothetical protein	A0A0K2CPK2	Brevibacillus_phage	2.3e-23	40.6
WP_001111326.1\|2491296_2491788_+	hypothetical protein	A0A0K2CNZ3	Brevibacillus_phage	2.4e-37	55.2
WP_103622755.1\|2491828_2492440_+	hypothetical protein	A0A127AW14	Bacillus_phage	4.9e-48	51.0
WP_103622754.1\|2492424_2495319_+	halomucin	A0A0K2CPP4	Brevibacillus_phage	2.2e-13	30.4
WP_103622753.1\|2495361_2499717_+	DNRLRE domain-containing protein	A0A127AWB0	Bacillus_phage	6.4e-25	27.5
WP_046392586.1\|2500286_2500655_+	hypothetical protein	NA	NA	NA	NA
WP_000655295.1\|2500654_2501032_+	hypothetical protein	NA	NA	NA	NA
WP_098583033.1\|2501231_2502239_+	LysM peptidoglycan-binding domain-containing protein	A0A127AWA8	Bacillus_phage	7.8e-11	46.9
WP_000998963.1\|2502255_2502555_+	hypothetical protein	A0A0K2CPL0	Brevibacillus_phage	8.5e-22	59.3
WP_000540599.1\|2502574_2503399_+	hypothetical protein	A7KV11	Bacillus_phage	1.4e-79	69.4

DBSCAN-SWA_5

2511522 : 2520910

Brevibacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000177372.1\|2511522_2512230_-	DNA polymerase I	A0A0K2CNW2	Brevibacillus_phage	7.3e-64	53.5
WP_000781409.1\|2512398_2512803_-	hypothetical protein	NA	NA	NA	NA
WP_103622750.1\|2513426_2514821_-	DNA polymerase I	A0A0K2CP19	Brevibacillus_phage	1.2e-102	45.4
WP_000207534.1\|2514907_2515567_-	hypothetical protein	A0A0K2CPH8	Brevibacillus_phage	4.7e-57	56.9
WP_001090550.1\|2516032_2516590_-	sigma-70 family RNA polymerase sigma factor	A0A0K2CPD2	Brevibacillus_phage	2.4e-25	41.1
WP_103622749.1\|2516617_2517694_-	toprim domain-containing protein	A0A0K2CNW6	Brevibacillus_phage	4.5e-105	54.3
WP_098583026.1\|2517718_2519011_-	DNA helicase	A0A0K2CP24	Brevibacillus_phage	5.7e-139	57.9
WP_046392598.1\|2519490_2520261_-	ATP-binding protein	A0A0K2CNX1	Brevibacillus_phage	2.0e-62	48.8
WP_000277551.1\|2520319_2520910_-	helix-turn-helix domain-containing protein	A0A0K2CNS5	Brevibacillus_phage	2.3e-26	43.4

DBSCAN-SWA_6

2720738 : 2729409

Bacillus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000755525.1\|2720738_2722019_+	NlpC/P60 family protein	A0A1V0DZX6	Clostridioides_phage	3.4e-11	31.5
WP_078421567.1\|2722118_2722883_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_000453886.1\|2723123_2724884_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	6.3e-274	98.4
WP_000612413.1\|2724969_2725647_+	response regulator transcription factor	W8CYM9	Bacillus_phage	2.5e-122	98.7
WP_001231631.1\|2725643_2726717_+	HAMP domain-containing sensor histidine kinase	W8CYF6	Bacillus_phage	3.9e-186	97.5
WP_061457074.1\|2726741_2727329_-	DUF3139 domain-containing protein	NA	NA	NA	NA
WP_061457075.1\|2727526_2728246_+	3-ketoacyl-ACP reductase	W8CYX9	Bacillus_phage	5.9e-61	100.0
WP_061457076.1\|2728536_2729409_+	aminoglycoside 6-adenylyltransferase	A0A1X9I6F2	Streptococcus_phage	2.1e-65	44.7

DBSCAN-SWA_7

5169892 : 5177578

Staphylococcus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000221062.1\|5169892_5170816_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.0e-45	43.5
WP_103622286.1\|5170941_5171877_-	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	1.2e-21	24.7
WP_000018059.1\|5171878_5172571_-	response regulator transcription factor	B5LWA6	Feldmannia_species_virus	1.0e-06	28.8
WP_001014310.1\|5172913_5173108_+	YwbE family protein	NA	NA	NA	NA
WP_001235507.1\|5173146_5174346_-	class I SAM-dependent rRNA methyltransferase	W6LLI2	Streptococcus_phage	3.6e-71	41.2
WP_103622285.1\|5174641_5174965_+	heme oxygenase	NA	NA	NA	NA
WP_001086126.1\|5175037_5175802_-	class B sortase	NA	NA	NA	NA
WP_000403758.1\|5175834_5176605_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	3.7e-13	27.1
WP_001036848.1\|5176594_5177578_-	iron ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	1.1e-17	27.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP044982

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP044982_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044982_1

1608-1688

Orphan

Consensus_repeat	Method
TTTTTCGGAGTACGCTCGGCTAAATAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP044982_1

>merge|NZ_CP044982|1|1608-1688|CRISPRCasFinder
TTTTTCGGAGTACGCTCGGCTAAATAAATAAACCGATACAAGACACGGAGCGTTTTTTCGGAATACGCTCGGCTAAATAAA

>NZ_CP044982|1|1|1608-1688|CRISPRCasFinder
TTTTTCGGAGTACGCTCGGCTAAATAAA	TAAACCGATACAAGACACGGAGCGT
TTTTTCGGAATACGCTCGGCTAAATAAA

>NZ_CP044982.1|WP_103622566.1|1342_1525_+|hypothetical-protein
MLPKVCVLYAFFSYLYVFCMCAYAFCMCLKQPQNDLQKLGRLFKRCGTLWDLLLPICDTF
>NZ_CP044982.1|WP_151909531.1|638_857_-|hypothetical-protein
MGDWKVDCFLGENRTKKTAKFGVGNQVLSFLDTRVTISAGKLVPLYVFKPCGCKVFNKKRLAFSGGKFYRFK
>NZ_CP044982.1|WP_078438457.1|1862_2123_-|hypothetical-protein
MTKIKICTPFITKNGKRIFPKNAKMFCFWVDEEKHKKYLEKKAKQEKKAEQKKKAKESEVSEASAPPEAPSEAPPEDKDTNTDKEK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP044982_1	1.1\|1636\|25\|NZ_CP044982\|CRISPRCasFinder	1636-1660	25	NZ_CP044982	Bacillus thuringiensis strain BT62 plasmid pBT62D, complete sequence	1636-1660	0	1.0

1. spacer 1.1|1636|25|NZ_CP044982|CRISPRCasFinder matches to NZ_CP044982 (Bacillus thuringiensis strain BT62 plasmid pBT62D, complete sequence) position: , mismatch: 0, identity: 1.0

taaaccgatacaagacacggagcgt	CRISPR spacer
taaaccgatacaagacacggagcgt	Protospacer
*************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP044979

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP044978

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP044982

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection