CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP028795	Klebsiella pneumoniae strain WCHKP040035 plasmid p2_040035, complete sequence	0 crisprs	NA	0	0
NZ_CP028796	Klebsiella pneumoniae strain WCHKP040035 plasmid pKPC2_040035, complete sequence	0 crisprs	RT	0	2
NZ_CP028794	Klebsiella pneumoniae strain WCHKP040035 plasmid p1_040035, complete sequence	1 crisprs	DEDDh	1	1
NZ_CP028797	Klebsiella pneumoniae strain WCHKP040035 chromosome, complete genome	1 crisprs	csa3,RT,cas3,DEDDh,DinG,WYL	0	16

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1796 : 50618

Escherichia_phage(57.89%)

protease,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000616807.1\|1796_2450_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_012602143.1\|2669_3134_+	Plasmid stable inheritance protein	NA	NA	NA	NA
WP_012602142.1\|3130_3235_+	hypothetical protein	NA	NA	NA	NA
WP_001067855.1\|4444_5149_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_013188475.1\|5659_6535_+	class A extended-spectrum beta-lactamase CTX-M-65	A0A1B0VBP7	Salmonella_phage	6.8e-152	98.9
WP_012579081.1\|6614_7538_+\|transposase	IS5 family transposase	Q9MCT5	Escherichia_phage	2.2e-177	99.7
WP_001067855.1\|9288_9993_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001067855.1\|11103_11808_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000957857.1\|12485_12674_-	hypothetical protein	NA	NA	NA	NA
WP_064441864.1\|12765_13302_+	recombinase family protein	Q1MVP4	Enterobacteria_phage	2.8e-84	100.0
WP_000027057.1\|13484_14345_+	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_012372818.1\|14514_15270_+	16S rRNA (guanine(1405)-N(7))-methyltransferase RmtB1	NA	NA	NA	NA
WP_001067855.1\|15719_16424_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_071557810.1\|16414_16555_+	hypothetical protein	NA	NA	NA	NA
WP_001333089.1\|18365_18647_+	hypothetical protein	NA	NA	NA	NA
WP_000361389.1\|18769_19120_-	protein stbB	NA	NA	NA	NA
WP_000959884.1\|19122_20085_-	plasmid segregation protein ParM	A0A222YXF2	Escherichia_phage	4.1e-94	53.9
WP_032146011.1\|20231_20525_+	hypothetical protein	NA	NA	NA	NA
WP_072109530.1\|20465_20645_-	hypothetical protein	NA	NA	NA	NA
WP_000085883.1\|20601_21285_+	DNA methylase	A0A2I7RE86	Vibrio_phage	5.6e-29	37.4
WP_001104881.1\|21285_21507_+	hypothetical protein	NA	NA	NA	NA
WP_000274503.1\|21520_21955_+	DUF1380 domain-containing protein	NA	NA	NA	NA
WP_011161242.1\|22654_23227_+	YubH family protein	NA	NA	NA	NA
WP_001198928.1\|23199_23625_+	antirestriction protein	NA	NA	NA	NA
WP_000271762.1\|23671_24094_+	DUF1380 family protein	NA	NA	NA	NA
WP_001027493.1\|24090_24282_+	hypothetical protein	NA	NA	NA	NA
WP_012372796.1\|24595_26263_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.7e-164	53.3
WP_015059006.1\|27142_27400_-	hypothetical protein	NA	NA	NA	NA
WP_000218642.1\|27662_27893_+	hypothetical protein	NA	NA	NA	NA
WP_000170695.1\|27944_29306_+	DUF3560 domain-containing protein	NA	NA	NA	NA
WP_015059007.1\|29352_29916_+	class I SAM-dependent methyltransferase	A8HNV9	Thalassomonas_phage	6.1e-21	37.3
WP_071528982.1\|29826_30021_-	hypothetical protein	NA	NA	NA	NA
WP_001479900.1\|30001_30463_-	hypothetical protein	NA	NA	NA	NA
WP_001127499.1\|30619_30739_+	hypothetical protein	NA	NA	NA	NA
WP_010891337.1\|30725_31292_+	single-stranded DNA-binding protein	I3PGW4	Xanthomonas_phage	8.5e-47	74.4
WP_000006003.1\|31349_31583_+	DUF905 family protein	NA	NA	NA	NA
WP_000845953.1\|33735_34170_+	conjugation system SOS inhibitor PsiB	NA	NA	NA	NA
WP_001276217.1\|34166_34886_+	plasmid SOS inhibition protein A	NA	NA	NA	NA
WP_001309236.1\|35546_35765_+	hypothetical protein	NA	NA	NA	NA
WP_012881134.1\|35939_36176_-	hypothetical protein	NA	NA	NA	NA
WP_001272251.1\|36238_36535_+	hypothetical protein	NA	NA	NA	NA
WP_085959725.1\|36615_37467_+	DUF945 domain-containing protein	A0A2C9CYF8	Yersinia_phage	3.5e-44	38.2
WP_015059008.1\|37763_38411_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA
WP_000124981.1\|38687_39071_+	relaxosome protein TraM	NA	NA	NA	NA
WP_077249350.1\|39201_39948_+	PAS domain-containing protein	NA	NA	NA	NA
WP_001254386.1\|40041_40269_+	conjugal transfer relaxosome protein TraY	NA	NA	NA	NA
WP_021519752.1\|40302_40668_+	type IV conjugative transfer system pilin TraA	NA	NA	NA	NA
WP_000012106.1\|40682_40994_+	type IV conjugative transfer system protein TraL	NA	NA	NA	NA
WP_000399794.1\|41015_41582_+	type IV conjugative transfer system protein TraE	NA	NA	NA	NA
WP_001340581.1\|41625_42297_+	type-F conjugative transfer system secretin TraK	NA	NA	NA	NA
WP_101307356.1\|42296_42554_+	conjugal transfer protein TraB	NA	NA	NA	NA
WP_001067855.1\|42565_43270_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_002903955.1\|44903_45806_-	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	2.6e-159	99.7
WP_002210513.1\|46066_46828_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_002904004.1\|46848_47709_-	class A extended-spectrum beta-lactamase SHV-12	A0A077SL40	Escherichia_phage	2.2e-155	99.3
WP_099093179.1\|47629_47869_-	hypothetical protein	NA	NA	NA	NA
WP_001067855.1\|49913_50618_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0

DBSCAN-SWA_2

77740 : 88899

Escherichia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004118283.1\|77740_78607_+	replication initiation protein	A0A222YYK1	Escherichia_phage	1.5e-23	31.1
WP_011977818.1\|79716_80922_+	ParA family protein	A0A077SL49	Escherichia_phage	5.3e-163	69.3
WP_086523286.1\|80918_81896_+	ParB/RepB/Spo0J family partition protein	Q38420	Escherichia_phage	1.4e-86	53.8
WP_013214011.1\|81977_83249_-	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	7.5e-152	63.7
WP_001568036.1\|83248_83680_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	2.1e-29	53.3
WP_009483812.1\|83838_84090_+	hypothetical protein	NA	NA	NA	NA
WP_004152765.1\|84089_85574_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_004152353.1\|85822_86794_+	mediator of plasmid stability	A0A222YXF2	Escherichia_phage	1.1e-73	46.8
WP_013214012.1\|86796_87468_+	mediator of plasmid stability	NA	NA	NA	NA
WP_001568040.1\|87530_87761_+	hypothetical protein	NA	NA	NA	NA
WP_001568041.1\|88197_88899_+	DNA methylase	A0A2I7RE86	Vibrio_phage	1.6e-26	36.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP028794

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP028794_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028794_1

11778-11859

Orphan

Consensus_repeat	Method
ATGATAACACAATCTGAGAATGACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP028794_1

>merge|NZ_CP028794|1|11778-11859|CRISPRCasFinder
ATGATAACACAATCTGAGAATGACACACAAATAAAGAACGATTTATCACGAAAAATCATGATAACACAATCTGAGAATGTCA

>NZ_CP028794|1|1|11778-11859|CRISPRCasFinder
ATGATAACACAATCTGAGAATGACA	CACAAATAAAGAACGATTTATCACGAAAAATC
ATGATAACACAATCTGAGAATGTCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028794.1\|WP_040108077.1\|6390_6915_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028794.1\|WP_040108014.1\|13622_14588_+\|ParB/RepB/Spo0J-family-plasmid-partition-protein	unknown	unknown	gnl\|CDD\|184254
NZ_CP028794.1\|WP_094818637.1\|9825_11748_-\|protelomerase	unknown	unknown	gnl\|CDD\|374724
NZ_CP028794.1\|WP_017899002.1\|28934_29528_-\|tail-assembly-protein	unknown	unknown	gnl\|CDD\|227067
NZ_CP028794.1\|WP_040108080.1\|8764_8995_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028794.1\|WP_032413547.1\|8603_8768_+\|host-cell-division-inhibitor-Icd-like-protein	unknown	unknown	unknown
NZ_CP028794.1\|WP_107331965.1\|8991_9771_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226144
NZ_CP028794.1\|WP_087731916.1\|14665_16099_-\|tail-fiber-domain-containing-protein	unknown	unknown	gnl\|CDD\|379398
NZ_CP028794.1\|WP_107331966.1\|1621_5626_+\|origin-of-replication-binding-family-protein	unknown	unknown	gnl\|CDD\|226990
NZ_CP028794.1\|WP_040108071.1\|5618_5915_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028794.1\|WP_107331964.1\|31820_35156_-\|phage-tail-tape-measure-protein	unknown	unknown	gnl\|CDD\|273790
NZ_CP028794.1\|WP_094818667.1\|31482_31821_-\|phage-tail-protein	unknown	unknown	gnl\|CDD\|377570
NZ_CP028794.1\|WP_023289191.1\|30730_31486_-\|phage-minor-tail-protein-L	unknown	unknown	gnl\|CDD\|282895
NZ_CP028794.1\|WP_032439857.1\|30018_30729_-\|peptidase-P60	unknown	unknown	gnl\|CDD\|163704
NZ_CP028794.1\|WP_087530330.1\|12456_13620_+\|plasmid-partitioning-protein-SopA	unknown	unknown	gnl\|CDD\|107201
NZ_CP028794.1\|WP_077268490.1\|6941_8075_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|334348
NZ_CP028794.1\|WP_048292304.1\|762_1371_+\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP028794.1\|WP_094818668.1\|16167_28872_-\|DUF1983-domain-containing-protein	unknown	unknown	gnl\|CDD\|227076
NZ_CP028794.1\|WP_025368256.1\|29554_29977_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028794.1\|WP_040108074.1\|5911_6262_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP028794.1\|WP_094818668.1\|16167_28872_-\|DUF1983-domain-containing-protein	gnl\|CDD\|227076	COG4733, COG4733, Phage-related protein, tail component [Function unknown].	0
NZ_CP028794.1\|WP_040108014.1\|13622_14588_+\|ParB/RepB/Spo0J-family-plasmid-partition-protein	gnl\|CDD\|184254	PRK13698, PRK13698, ParB/RepB/Spo0J family plasmid partition protein.	2.21481e-131
NZ_CP028794.1\|WP_017899002.1\|28934_29528_-\|tail-assembly-protein	gnl\|CDD\|227067	COG4723, COG4723, Phage-related protein, tail component [Function unknown].	6.35031e-61
NZ_CP028794.1\|WP_048292304.1\|762_1371_+\|XRE-family-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.92873e-12
NZ_CP028794.1\|WP_107331965.1\|8991_9771_+\|hypothetical-protein	gnl\|CDD\|226144	COG3617, COG3617, Prophage antirepressor [Transcription].	9.86866e-41
NZ_CP028794.1\|WP_107331966.1\|1621_5626_+\|origin-of-replication-binding-family-protein	gnl\|CDD\|226990	COG4643, COG4643, Uncharacterized protein conserved in bacteria [Function unknown].	4.73328e-06
NZ_CP028794.1\|WP_087731916.1\|14665_16099_-\|tail-fiber-domain-containing-protein	gnl\|CDD\|379398	pfam13884, Peptidase_S74, Chaperone of endosialidase. This is the very C-terminal, chaperone, domain of the bacteriophage protein endosialidase. It releases itself, via the serine-lysine dyad at the N-terminus, from the remainder of the end-tail-spike. Cleavage occurs after the threonine which is the final residue of the End-tail-spike family, pfam12219. The endosialidase protein forms homotrimeric molecules in bacteriophages. The catalytic dyad allows this portion of the molecule to be cleaved from the more N-terminal region such that the latter can fold and presumably bind to DNA.	1.12328e-08
NZ_CP028794.1\|WP_107331964.1\|31820_35156_-\|phage-tail-tape-measure-protein	gnl\|CDD\|273790	TIGR01760, COG5283:_Phage-related_tail_protein, phage tail tape measure protein, TP901 family, core region. This model represents a reasonably well conserved core region of a family of phage tail proteins. The member from phage TP901-1 was characterized as a tail length tape measure protein in that a shortened form of the protein leads to phage with proportionately shorter tails. [Mobile and extrachromosomal element functions, Prophage functions].	6.22844e-25
NZ_CP028794.1\|WP_023289191.1\|30730_31486_-\|phage-minor-tail-protein-L	gnl\|CDD\|282895	pfam05100, Phage_tail_L, Phage minor tail protein L.	1.42244e-87
NZ_CP028794.1\|WP_032439857.1\|30018_30729_-\|peptidase-P60	gnl\|CDD\|163704	cd08073, MPN_NLPC_P60, Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains. This family contains bacterial MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains at the N-terminus of NlpC/P60 phage tail protein domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.	2.29626e-52
NZ_CP028794.1\|WP_087530330.1\|12456_13620_+\|plasmid-partitioning-protein-SopA	gnl\|CDD\|107201	PHA02519, PHA02519, plasmid partition protein SopA; Reviewed.	0
NZ_CP028794.1\|WP_077268490.1\|6941_8075_-\|hypothetical-protein	gnl\|CDD\|334348	pfam01024, Colicin, Colicin pore forming domain.	8.3243e-22
NZ_CP028794.1\|WP_094818637.1\|9825_11748_-\|protelomerase	gnl\|CDD\|374724	pfam16684, Telomere_res, Telomere resolvase. Telomere resolvase (protelomerase) catalyzes the conversion of linear double-stranded DNA into hairpin telomeres.	4.4817e-14
NZ_CP028794.1\|WP_094818667.1\|31482_31821_-\|phage-tail-protein	gnl\|CDD\|377570	pfam05939, Phage_min_tail, Phage minor tail protein. This family consists of a series of phage minor tail proteins and related sequences from several bacterial species.	3.3799e-51

>NZ_CP028794.1|WP_094818637.1|9825_11748_-|protelomerase
MRKVKIGELINSLVNEVEAIDASDRPQGDKTKKIKAAALKYKNALFNDKRKFRGEGLKKRISPNTFNAYMTRARKRFDDKLHHNFEKNIVRLSEKYPLYSEELSSWLSMPAASIRQNMSNLQTKLKSIMHLAEELSNIKIGARNSEAKLNKLANKYPEWKFAISDLNSEDWKDNRDHLYKLFQQGSSLLGELNNLKVNHEVLYHLQLSSAERTSIQQRWSDVLSNKKRNVVVIDYPRYMQAIYNIINSPISSFDLTTRRGMAPLAFALAALSGRRMIEIMLQGEFSVAGKYTVNFSGQAKKRSEDNNLSREIYTLCDAKLFVKLIYELRSCPAALDFEELLKGYGENDTRPGNGRVTAILSTAFNPWVKKFLSDDRRVYKDSRAIYARIAYEMFFRVDPRWKNVDEDVFFMEILGHDDENTQLHYKQFKLANFSRTWRPDVGEENTRLAALQKLDSMMPDFAKGDAGVRIHETVKQLVEQDPSIKITNSTLRPFNFSTRLIPRYLEFAADALGQFVGENGQWQLKDEAPAIVLPDEEILEPIDDADLDDGDQEDETLDDDEIEVDESEGEELEEVDDAEEAEEAEQEEKHPAKPNFKAPRDNGDGTYMVEFEFDGRHYAWSGAAGNRIEAMQSAWHAYFE
>NZ_CP028794.1|WP_107331965.1|8991_9771_+|hypothetical-protein
MNALSVFSFQEAYPVRVIMIDGNPWFVAKDVCDALRLTNSRVSLDALDDDEKGVSSTYTPGGNQKVSIISESGLYTLILRCRDAVKQGTTAWRFRKWVTNEVLPAIRKNGEYSYVETTPKSAGEPLDWRQKEELRGLINDIAQSFQYRNAWISGVWLALRRACRNPSPNPITVDDLPAIIAELRRILTAAETALGNMRVYERELLREVVRGGRQSMSCEELPITDINTEMEKVLPAHFELAISKLETLSMKLTPPAISS
>NZ_CP028794.1|WP_040108080.1|8764_8995_+|hypothetical-protein
MNQVQLNTQGLLESIEERLAQIEALVSSAHRTISSYEASLYMQEAAELLQLARELVQEARNCSSSLSAELTTREAE
>NZ_CP028794.1|WP_032413547.1|8603_8768_+|host-cell-division-inhibitor-Icd-like-protein
MFKFKFAAICRTDKKSHIHHLSTIASSEREARRQFASRFVLVLSARIRVSGVAA
>NZ_CP028794.1|WP_077268490.1|6941_8075_-|hypothetical-protein
MPEETLTVVGGGNNSCNVSWGGGNGNNGGAGYSGKYGGTSYEGATSMLKLNDRVLIQLYLCNPLNPDYIGAPWGSDKDAESIIRANRDKPGKFKANIQNWKTSGTGSLGSPVIGKASSSGDVDTYSVSFGKEKYNVLYNRKKGSFTTGYIDGGASKPEDSMKDQAVAVVKLYLLNESQASVIDTTSGIITDSGKTLSGKLGDKYNTLAKEAADNIKNFQGKKLRSFNDAMASINELANNPKMKLSQADKTVVSNALKQMDLSALADRFKGLEKAFTWGDRLLKAEKIRDGVVTGVTTGDWQKLAFEVEAMYLSGVAGAVALGITTAMISTVAVALSLPAVAVSALTVVSVIGISILTSYIDADKAKALNNAVLGLFK
>NZ_CP028794.1|WP_040108077.1|6390_6915_+|hypothetical-protein
MEGKGLFKYSLISLLLGITPIIIIFFIHFSNESSHIISYLFDIANGYQRDFSEQYLAVSTIASAYTKTAPIFVILMYIICWNKFDIKTIKLDLKRWLKLLPGVLLLTAGAYYLTYIGVENMSDSMYRIKRIIAGNEYFLLIYYILLFLTNYFFIWLFLIYLYLLKGLPFFQKRR
>NZ_CP028794.1|WP_040108074.1|5911_6262_+|hypothetical-protein
MIYRKGWVPVLFRHELERKLKEQGFENWKEICNFLCGEGDDYAESAKMPEQYDYQVVDNTKWMASRDATFWQRLNRLWFVPLYSLTIPFQWLIRGRVGFATTSKTAALFSRITGLK
>NZ_CP028794.1|WP_040108071.1|5618_5915_+|hypothetical-protein
MAKDIDALLEQQADQMTSVLKSHAAHIESMLAQHRFQVAQLALHNSPEPFVHEVFNHLRDRLVQVTINEAGLADAEDARYLLRILDRMELSALEGKPL
>NZ_CP028794.1|WP_107331966.1|1621_5626_+|origin-of-replication-binding-family-protein
MTLQEFYAARFGSDPYSLLEAARDELSELATMAGINWAACADNIQLNPRGGEERYSKYNGQAPEALEKSLKGRVEIYSRKEQHKSGISYPFVNFVQKGHDEGSWSGFSFLFAEYRREQQRNHATVVAQPAEELARIERQAEARKRRAEQQRINELKNNQLEQERLLGWLAFHSAWEHAPAEDGSWPYAVKKGIRDVFSACDIRRVTSHDNAKWSRGPTTYMAIPLAHLDGRKDGQIVGWQRIDQRGGKFQTSAITSGDFVGACFVIGNLNGAQNIAVVEGFATGASVWLATRKDPKKSFDAVVVAVAANNMIHVVEQLVNMYPAAKITCALDNDRKSSAEGKGNTGLRTGFDILAKFSGIKCVYPTFEDDPQLECSDFNDLHRLRGLRETCRQLFAKGNRLSNSTDLLSLTLNKLKTAKRDNRRTFAKELLNAVDIGMLTCPVPNSPADLFNMFCIVLRDMGLESVYRATVKDHIARRLNRKCRTAQAPRSFSERITDPNKRPQHITYKRFETSVMTDEILQYVQQLQGIVIVRAGMGSGKSTGLLRPLMHNADRGVSVAHRVSLIGGLWEMMTEQKGTKADILHYQDPGYQEMAPYANKLTICINSIVKGCWQPLMRQHDYFGFDEATQGLRAILSGRAMENPVAVFNTLIDALARTELHPIMVDADANDLLVDLAELAMKRREEMGLPAWLQIHVIELPVDVRNRETGEPIRVFYTEKDRIMTEVIKAVELGEKIMLATDSSTFAEDVTATLRQRYPEKKFLCVNQKSKPEPEVEEFTNKPKKMVKKYDGLIYSPSISSGVSIEQKHFDRHFGMFCGEVVPSDAIQMLRRDRTAKEFIIGFDKVRARRETDPQKIERAFVQALLATAGMNGELTDVVFDGDRISMGVANTDFTRMKIKAAAIEASARNDYASNMICIMHSDGYKVAPLASDELANCVGKELRKEAREIVWEQTLDLHLNIETPNESEREAILKKRALTLEEQAKLVRWDIEHELKLPVNEDNLKFYFDGARDKVRRYETMLLDEITARRFDREESAINFTYAFRQAGQWQYFTATAMTREQADEAFQAKHPGITEYKVKSTPAVEVGMRGFYGLKSTVLRQYFIDCGIDPETMTGEATQARLAYARDKLMTAERRDLLNNVLRIGGFMTPKGKPKVPEALFKTICESLGLKTDKRRARDGDKRPTIRFVDQQSAAFMMEILENRKDDGLSLQLRKAEKATTEVDHGLDLNIYMDHKTRSTNGQDLDAPHSVITEALAELPVPVPEAWAMTALSDDELATMTSWSPASIAMTFASLYLTEFMDRLSSNELRRLREYITGTVTGGYDAQEAFYG
>NZ_CP028794.1|WP_048292304.1|762_1371_+|XRE-family-transcriptional-regulator
MIDRMKTRGERLKARRLELKMTLKQVAQSVGISLPGVQNLERGDVMPSLEIGLALAKCLRKPVQWILFGTESDPDRVPVIGTTESGPDSDWQPGEPANTERFLPFVSQRETVYALTVGNQVQHSYQPGDVVLVDSALTPVPGEDVLVCDKDGKISIQRLARFDDERYYLDGVNSQRVIHEKSDLQFVHQIVGTIKSFMIEGR
>NZ_CP028794.1|WP_087530330.1|12456_13620_+|plasmid-partitioning-protein-SopA
MSLINLLQECISRGQEMTQAIAIAQFGDDSPEARKITRRWGITEVADLIGVSPQAIRDAEKNGRLPPPDFELRGRVERRAGYTIDQISHMRSIFGNPNQRPADKNPAVLAVMSHKGGVYKTSSAVHEAQWLALQGHRVLLIEGNDPQGTASMYHGYVPDLHIHADDTLLPFYLGERDNAEYAIKPTCWPGLDIIPSCLALHRIETDLMQYHAQGKLPHPPHLMLRAAIESVWDNYDIIVIDSAPNLGTGTINVVCAADIIVVATPAELFDYSSVLQFFTMLLDLLKTVDLGGFEPVVRLLLTKYSLTTGNQSRWMEEQIRNTWGSMVLRQVVRVTDEVGKGQIKMRTVFEQAAYQRSTLNAWRNAVSIWEPVCQEIFDDLIKPRWED
>NZ_CP028794.1|WP_040108014.1|13622_14588_+|ParB/RepB/Spo0J-family-plasmid-partition-protein
MKQRSILKNAPNIDSIMSKTHQAPASQPVSPMVGDLQRQLSSLSGNSIMLPVCGRNVNFKLETIPADKVEMATMVWLGNERDQDLLNETSLADLVPSFLTSGQQNPAFARKTAGIIEVADGSRRRKTAIITGCDYRVLVGDLDDEQMQWLSQIGNDYRPTSAYERGKKYQRRLKDFDGSVKALAEAEGVDRNIITRCINTAGLPKDIIAIFQHPGELSARAGHDLFKIYQGNEKAMLDAAQQLLRMKKQGEKFEPMRIIQALQDFIKTNAKDTQKTEKAYGEGVVAKYNGNYVTLKFDNRKIPSSLMKKIEELLESELEKK
>NZ_CP028794.1|WP_087731916.1|14665_16099_-|tail-fiber-domain-containing-protein
MAMYEVGTVTGAASQARVTGATTKWSQEALGILPGSILVVYRSGSADLYAIKSVDSDTQLTLTRNITTAFSGASYGIITAETASTSSFANQLASAFAFWRSVVEGWSMALTGSGNITLTDPITGKQVTVPAIAGMAKASDLNALAKLTGGNDLDGSQVITSDNAGFILGRNNDIGLVKKSGTYGKLMVGSGTRFSVVKGNKATISPEDTQTEIMGVDSAGNLAVPGNISAGKYFAQAIELSMSTPYIDFHFNDSTADYTTRLIENVAGELTLEGAFMCKKHLYAWGALMARSVAPSNPANGQLITGAPFQSMIQGRGGFGDARGAVANYYVEESVGSEHRAVVYLDGYGRTDAWIFRAGGTISTGKGDVLTTGSDVRLKEDFTESREGASRRINALGVCEFNMKGETRRRRGFIAQQAEKADDLYTFLGIEQEIDGEKFRVMNVDYTAIIADLVTVAQGLLVKNQELERRISVLEGT
>NZ_CP028794.1|WP_094818668.1|16167_28872_-|DUF1983-domain-containing-protein
MANNIIKGRKGGGSKQRTPTEQPDDLQSVAKAKILLALGEGEFAGGLTGKDIYLDGTPLENADGSQNFSGVSWEFRPGTQAQTYIQGIPGTENEISVGTEVSSKTAWTHTFTNTQLSAVRVRLKWPSLMKQEDDGDVVGNTVKYAIDLQTDGGAWQTVLETAVTGKTTSGYERSHRIDLPQAGSTWTLRLRKISPDANSVKTGDVMTLQSYTEVIDAKLRYPNTALLYIEFDSSQFNGSIPQISCEPRGRVIRVPDNYNPETREYTGVWTGGFKWAWTDNPAWIYYDIVIADRFGLGNRLSSANISKWTLYQIAQYCDQLVPDGRGGDGMEPRYTCNVYVQERNDAYTVLRDFAAIFRGMTCWNGEQIVVQADMPRDVDFTYTRANIIGKPRYSSSSSQVRYTNALVSWSDPDNAYADAMEPAFIPELVSRYSFNQLELTAIGCTRQSEAHRKGLWGILTNNKDRVVEFDVGLDGRIPQPGYIIALADELLAGRVNGGRISAVNGRVITLDRDVDAKPGDRLQLNLPSGISQSRTIQAVNGRRQITVTTAYSETPERECVWAVESDDLFLQQYRVTGVKENSDATLTITGVAHDPDKFARIDTGAIIDQRPVSVLPAGNQSPPDDIVITSRSVVNQGISVETMQVNWSAVSGAIAYEAQWRRNDGNWINVPRNSTTSFEVSGIYAGRYLVRVRAINAAEISSGWAYSEEKTLTGKVGEPLAPLALATRSLVHGVQVSWEFPTGSGDTLRTELQYSKNQDGSAPMPLSDVAYPGKSYQQMGLSMGAEFWYRVRLVDRLGNESPWTGWVQGMASDNFDDYYENLTDAIKDTAAWEETQRTISETQEGIRNTQQELEQTAEALRKEAEDQAKQVSQDIDASAKSITADVDGKISAVNKTITDEITSVNEALDSGLAQANKGVQEAKSAVADANKQIATVNKSLTDSITQVRQSVTDTAAEINATIDLEIARVSKTLADGDAALNAQIKTAENGLKQSLSQVNTTLTNAVKQETADRIADVNAKASQAADELLAATQGIEASIESLTQVMKTADENLAREMSSLAAGANIQFDSQVIWHFNNQTTEGWTGSAGVPGVSQDGWLRPADSATDPYITSPGGLAVDGAAYRFIMLRFRKTGKPVWAGEIRWVSAGENFNNTKRYIVAEPEYADGVATLTVRDIPWTGNIDRIRLDLTNQQDASNFIEFDWIAVGRPAPGASTAALQDVRSTLSNALTAEAQARSTLAAQMRGSYDGSDLEKVTSGLLYQEKTARVTAISAEVKARESLQTQFNDNKAAVSGELSSLTTEQSAQASRIGGLETSLGKKADAAALTSLTQKVEQQGATLTSQGAALTSLTNRVGQTETGLAGTNEALSGLQSVVTQHGDRITSQGQSITKLTSDLGMTNAALAKKAEAAAVTALTQQVEQNGRDIRSNTDSITSLSNQLVNGQPNRWSRRLYPVQLANAGTVPSFSDVRAVAPTVVDEVADAAKLDFTSAGSYLIALYSCQVKVAADTTITLAPGARVFDDTGAIFVNGVQVAWGNASWNTVSFELKAGWNTVEFLVNQWTGQAYINLGLKLSDKVAEMYSGLGVSALANAAGVLSSNVSQIGNEVVSNSQSITQLRNALTQTDANVASKADQTAMNSLTGRVEKTESGLTAANANITSLKSAVRAGNASGGDLIPNPTFDPAYDQMGFSVVSTTAEEVPPGCPYGYAARIASRDHHPNFAAFPATLNDVIEISALVACGAGTANFNLYVGTAVRPDTSTGAPLMAGGGKSPSATWQRTTWRFKVTQAMVDRGYIRPFLQISQNSPYGTVWFVTDWHMRNVTAAQKVQDTADATAAAVDSLTTTVTQQGNLLTSTGNRTTQLENGLATTNAAVAKKADATAVQDLTNTVTQLGNDLTAANSAITKLTGNLANTDKALAQKADATALATLDTKVTQQGKTLESQSNSLTNLSNSLSQVAADIDASGQIPGNLVVNPSFERGLDGYTGRSTATSVVEVSAPHSGTRALKVDPGSVSPGQYIPFVQGRTYEIGVWVKEPGATTDNGAGNNKLRIGNSAGQPVFERPYNSGTVGTNWTLVSGRWKATETASLPVTLSNYLINGSRYFDDFYVTDVTDRVDIDATAGAVTGLTSRVSTAEGAITSQSQQLTNLQNSLNTTNSNVSKKADATALTSVDNRVTEAEGKLTTQSQQLTNLANVLTATRNAGDNLIPNFDFLQGSTAWDIQYPAGVTFGDFGDGKAGVRLNRTTNTSPGIFSNNNKPVPLNGQRKYRVVVKAKGVSGAMSLLIRRQNKIGQTDSTYEDKTVTLTTDWQTITWETGLTAAGADGQNFKLYSHPTNGEIWLDSVRVFDITDETNIKATSDAVSSLTGTVTNQGNTLTSQGQSITALNNALEGVKGDVAKKADASAVSSLTNRVTQTEKDIRSQADSLTRLNTSLKQQATRGANVLPDGSFESYAVGDVLSNARAVITSEAAHSGTKSLRVTRSTEYNPNATDNNDTHIFSGMQVRDNAVYYVEAWVKLPAGSTADPTVYMVLGFSFQDSANGWSWPGLNVKVSELSVDNWTKVSGYLTNNRTALKQAMVRISIPNTPKVRLGDAFLIDDLIITDVTDAKAALDAADANAQALSSLSASVTQNGKNITSQGSAITKLQSDVTQLGKDISGKADASALTNLTTRVTATEGSLKSQGDSLTNLQNSLNTTNSNVAKKADATALQSLQNTVEQHGRDLTTQSSALTNLENNFSSLAVGGTNLIRNADTLEGWSSRHATETYLGDRVAYTRLAKGASGYIQLDEQTLDVTGRTEFVFSFYAKGAYNGQEMASYFYNPSNTTTTETSQGVKGGAGDGKAVTKLTTAWARYWVKWVIPATSGTKRLIAARLESATSADKEVWLCRPQLETGTVMTDWSPSPDDAASGITANTSAINSLTSRVTNAEGQLTAQSQSITNLQNSLNTTNNNVAQKASAQSVSDLTSRVTSAEGKITSQGQAITKLQGDLSSTTDKVNTKADQTALNALTGRVEKTEAGLTAANSNIVSLTAAVNAGNAAGDDYIPNPSFDPAYDRMGYDVVETTAAGVPADCPFRYAVRLAGRDHVPKINNIAVTPGDVYEMSALVACGTGSADFNFYIGRATTATGGIGARASGGNTKTTTAWKRATWRFTVPADTNFLRPFLQVNQSSPFGTVWYAADWHMRNVTAANSAQKTADATAKAVDSLTTTVSQQGDTLSSIGTRTTSLENSLRSTNDTVSKKADTTAVTQLQGTVTQQGNDIAAANSALTKLSSDLATTNANVNKKADASAMNTLQNQVTEQGKTLSAQGDSLTQLSNSLSQTAADIDASGKMPGNLIVNGSFERGAAGFTGWSSTATVADLQVPHSGNKALKMSAGQSNLVGQEISITQGRTYRMGVWAKQDPGTTIKDAGNTKFRVADSTGLLVGSNYGPFSSGWQLVTFDWKATKTTTASFQLTTFLSAGAMYFDDFHVLDVTDEKDIAANAGAISQMNTRVTAAEGAITTQAQQLTKLSGDLAVTNAAVSKKAEQSAVTGLTTRMTSAEGKLDSQSQQLTSLQNSLTTMNTELGKKADTSAVSSLTGRVSQVENTITSQSQSITSLTSTINTIRTQGANPWVDGTFESYSDGQVLGGNGTAVVVASQKFTGNKSLQVSRGANNNGNSDKQLGSWQSVREDAKFRFEFWAMMPADQAPSSGWTTLVGINSLNAAGQNSWQSAVTVSEAALGARDKWVKFTGIASNNGGGRTRAVVWISTRGASGSGTPGYSLYIDDLVITDVTDAKAAQDASDATASAVSGLTARVTDAEGKITAQAQQQTALATKVDNANSRVDNMAKTLSDSQSTQASLNTSLQSQIDAQAAANIKNQTTLDNTIKSVASITSTQQTHATALEALATQQTTLTSSVGDLSASVQNTAKTVADVNGTVSSLWSMKVETVNGKNVGAGITLGSNGETSDMILYADRFSLFNRNNATAVPVMVAEGNELYIDTARIKNSSLTSTKIADGSITNAKIGNEIRSNDFVDGSRGWRIAKDGSSQFNNVIVRGAVYATDGWFQGTVYANHIEGDIGSFAINIAQHRTRKVPKATWQWFELARFRRQNFDQVINIRGGLLQTDSITIDGGAKLRAGMSYAPGADGGLNPGYLSYAMLLRGTGATSGGGSMELGIELMYETGGATRLLTAQESMNVDNMSFVVPAGTGDAVLRYGCYLDRNGQMVLTILSRFDAFAARNNNVIRGSST
>NZ_CP028794.1|WP_017899002.1|28934_29528_-|tail-assembly-protein
MQEIMTRIELSGILGKTFGKVHHRLISTVQEAGIALAATIPGFENFMNNSKEKGLTFAVFKGKKNIGKDDLGFPVGGEVIRIVPVLIGSKKAGLLQTILGAVIIVASAVGSYFVPGNPVSAFGYKMGAAMMLGGVVQMLSPQPAGLARKESADNKASYAFGGVTNTASQGYPVPLLYGKRRIGGAIISAGIYVEDQQ
>NZ_CP028794.1|WP_025368256.1|29554_29977_-|hypothetical-protein
MKKIALALAIVTVTGCSTTVVPPSQAISASKEHVFKYQENEGNNGSLTIVRDSGFVGAGCYATVYLNGERVAKLDPKEKATFYLSEGEWAVGANLEGKGLCSLNRERQERFFNIKAGEKKAARVFTDANGDLDIRPTTIN
>NZ_CP028794.1|WP_032439857.1|30018_30729_-|peptidase-P60
MRQKTIKAIQEHAAAEYPREACGLVAQRGRAERYFPCRNLATESKDNFVLAPEDYAEVEEWGTITGIVHSHPDATTQPSELDKAQCDATLLPWHIISWPEGDLRTIHPRGELPLLERPFVLGHYDCWGLVMSYFRQTHGIELHDYRVDYPWWEKEYPDNFYQDCWYECGFREFDGPPQPGDMVIMQVQADKWNHAGILLEGNMLLHHLYGHLSKRVPYGGYWLDRTMKIVRYHSLC
>NZ_CP028794.1|WP_023289191.1|30730_31486_-|phage-minor-tail-protein-L
MSLNANYQKLEPGDEVRLLEIDGQAFGLDEVLYFHGYNVPHTAAEILAAGGDLDKLPAKSIWWQGREYKAWPCEIEGIESSTTGSDAQPTLRVGNIDGKISALCLHYDDLALARVVIHDTQKQYLDAKNFPDGNASADPTQEKRRLFFIDVKHYEDDEKVEFTLSSPFALQGMMIPTRQLHAICTWCIRNQYRSGNGCDYAGTRYFDRNNQPVDDPSQDVCNGTLTACKLRHGENSELPFGGFPGTSLIRS
>NZ_CP028794.1|WP_094818667.1|31482_31821_-|phage-tail-protein
MAIEIFTWSPRVNPQQTVNFRVRKAQFGDGYAQVCGDGINTRSQDWELSFVGTEDYIRPIKQFLDRHAGTRAFQWTPPLEEVGLFRCEQYKPVPLGGGNYSLSATFIQAFKP
>NZ_CP028794.1|WP_107331964.1|31820_35156_-|phage-tail-tape-measure-protein
MADVASLAVGLHLNAASFKSQLLGAYGDAENQSRRFNRNAQADAKKTEDAYKKVGLSISGMASRLAGLAGAGLSIGTIVTTSRQYGQALSDLQAITGATAAEMKALDLAAQEMGRTTEYSASQAAEALKLMASAKPELLKTSDGLQKATNSALILAQAAGTTLPDATRTLALSLNQYGASAQEADRYINVLAAGAKYGSSEIVDTAAAIKNGGVAAAQAGVGFEQLNAAIQVLAEREIKGGEAGTALRNVILNLEKGTDKSLKPSVVGLSQALTNLSGKNLSTAQAVKLFGVENLNAASILVQNRSKLDELTASLTGTKTAHEQASIRVNNLNGDLLGLSSAFEGMVIKIGQSSNGPLRSGIQVATEALNSLADNFNTVSSVALYSLIPVLSTKLTAGLRENIAAWRESQAAVKARAQADADIARKTLDSTAAILKQNDAEFGHYRQMERTAKQYGMNISYQDEFTRLIRQETEQTNLASQAKLKLAAANRQLSISARAASVAVGLARGALAFVGGPVGAATLAGSALLYFHQQAKEARQSAIDLKDAVVETSEALMRLSLNQLNVKQFDLEDKYENQVVQRNQLIKEIQDADSRIDSLKGFDPFGQLEGVTKDQTRARADLDSVNEGLRKTEENIKRVSDAKTLAQLGLSGKITSLTDDLKGALSTPPKETGDGNPWGGDGGTGTGKGSKSQVDQFKTLRQQIEEAHASSLARINLQEKDSNRELQEAAKKNGASDADLQRALLMNAENYQKQRLDLAAQYSPAQETLRKEREASRDLAELFKARLLDEKEYQAARITLARDTAKELLQAHADEIAAPALDIAGEVDPLVSLRNQLAQRQALLQAYYQGSAISKEQYEMLMQKATKESADAQYQTSLELYRSQGEFQSLAVGLFETAHERSSNFLTSMLTRTRSFKENMADLFSSLTQSIIKNLVDMAAQALVTSSVMQTIMGVVGVGTSVVTGAAGAGSGTAIQNAASNFQFNAKGGVYDSPSLSAYSNQVYDSPQFFAFAKGAGVFGEAGPEAIMPLTRAGDGSLGVRAVGGGQNAGASEGPKVYITIEGGNTSTQAPSGFEQFGQQIGSFVEKKYRELMAQDMRPGGMVWNAVKGQR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP028794_1	1.1\|11803\|32\|NZ_CP028794\|CRISPRCasFinder	11803-11834	32	NZ_CP028794	Klebsiella pneumoniae strain WCHKP040035 plasmid p1_040035, complete sequence	11803-11834	0	1.0
NZ_CP028794_1	1.1\|11803\|32\|NZ_CP028794\|CRISPRCasFinder	11803-11834	32	MT090961	Klebsiella pneumoniae strain KP18-2079 plasmid pKP18-2079_54kb, complete sequence	54750-54781	0	1.0
NZ_CP028794_1	1.1\|11803\|32\|NZ_CP028794\|CRISPRCasFinder	11803-11834	32	NZ_CP026760	Klebsiella aerogenes strain AR_0062 plasmid unnamed4	60818-60849	1	0.969
NZ_CP028794_1	1.1\|11803\|32\|NZ_CP028794\|CRISPRCasFinder	11803-11834	32	NZ_CP026760	Klebsiella aerogenes strain AR_0062 plasmid unnamed4	61060-61091	1	0.969
NZ_CP028794_1	1.1\|11803\|32\|NZ_CP028794\|CRISPRCasFinder	11803-11834	32	NZ_CP014747	Klebsiella aerogenes strain FDAARGOS_139 plasmid unnamed	22667-22698	1	0.969
NZ_CP028794_1	1.1\|11803\|32\|NZ_CP028794\|CRISPRCasFinder	11803-11834	32	CP038007	Klebsiella phage 020009, complete genome	28-59	1	0.969
NZ_CP028794_1	1.1\|11803\|32\|NZ_CP028794\|CRISPRCasFinder	11803-11834	32	NC_011774	Bacillus cereus G9842 plasmid pG9842_140, complete sequence	137692-137723	10	0.688

1. spacer 1.1|11803|32|NZ_CP028794|CRISPRCasFinder matches to NZ_CP028794 (Klebsiella pneumoniae strain WCHKP040035 plasmid p1_040035, complete sequence) position: , mismatch: 0, identity: 1.0

cacaaataaagaacgatttatcacgaaaaatc	CRISPR spacer
cacaaataaagaacgatttatcacgaaaaatc	Protospacer
********************************

2. spacer 1.1|11803|32|NZ_CP028794|CRISPRCasFinder matches to MT090961 (Klebsiella pneumoniae strain KP18-2079 plasmid pKP18-2079_54kb, complete sequence) position: , mismatch: 0, identity: 1.0

cacaaataaagaacgatttatcacgaaaaatc	CRISPR spacer
cacaaataaagaacgatttatcacgaaaaatc	Protospacer
********************************

3. spacer 1.1|11803|32|NZ_CP028794|CRISPRCasFinder matches to NZ_CP026760 (Klebsiella aerogenes strain AR_0062 plasmid unnamed4) position: , mismatch: 1, identity: 0.969

cacaaataaagaacgatttatcacgaaaaatc	CRISPR spacer
cacaaacaaagaacgatttatcacgaaaaatc	Protospacer
******.*************************

4. spacer 1.1|11803|32|NZ_CP028794|CRISPRCasFinder matches to NZ_CP026760 (Klebsiella aerogenes strain AR_0062 plasmid unnamed4) position: , mismatch: 1, identity: 0.969

cacaaataaagaacgatttatcacgaaaaatc	CRISPR spacer
cacaaacaaagaacgatttatcacgaaaaatc	Protospacer
******.*************************

5. spacer 1.1|11803|32|NZ_CP028794|CRISPRCasFinder matches to NZ_CP014747 (Klebsiella aerogenes strain FDAARGOS_139 plasmid unnamed) position: , mismatch: 1, identity: 0.969

cacaaataaagaacgatttatcacgaaaaatc	CRISPR spacer
cacaaacaaagaacgatttatcacgaaaaatc	Protospacer
******.*************************

6. spacer 1.1|11803|32|NZ_CP028794|CRISPRCasFinder matches to CP038007 (Klebsiella phage 020009, complete genome) position: , mismatch: 1, identity: 0.969

cacaaataaagaacgatttatcacgaaaaatc	CRISPR spacer
cacaaacaaagaacgatttatcacgaaaaatc	Protospacer
******.*************************

7. spacer 1.1|11803|32|NZ_CP028794|CRISPRCasFinder matches to NC_011774 (Bacillus cereus G9842 plasmid pG9842_140, complete sequence) position: , mismatch: 10, identity: 0.688

cacaaataaagaacgatttatcacgaaaaatc	CRISPR spacer
caaaaatacagaacgatttatcaagcgtggag	Protospacer
** ***** ************** * . ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 54181

Klebsiella_phage(88.24%)

portal,tail,terminase,capsid,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032408972.1\|472_682_-	hypothetical protein	Q6UAU5	Klebsiella_phage	7.7e-30	92.8
WP_048292304.1\|762_1371_+	XRE family transcriptional regulator	Q6UAU6	Klebsiella_phage	1.3e-104	92.6
WP_107331966.1\|1621_5626_+	origin of replication binding family protein	A0A2I6TD01	Escherichia_phage	0.0e+00	81.3
WP_040108071.1\|5618_5915_+	hypothetical protein	NA	NA	NA	NA
WP_040108074.1\|5911_6262_+	hypothetical protein	O64343	Escherichia_phage	3.3e-49	76.7
WP_040108077.1\|6390_6915_+	hypothetical protein	NA	NA	NA	NA
WP_077268490.1\|6941_8075_-	hypothetical protein	NA	NA	NA	NA
WP_032413547.1\|8603_8768_+	host cell division inhibitor Icd-like protein	Q6UAV3	Klebsiella_phage	2.8e-19	96.3
WP_040108080.1\|8764_8995_+	hypothetical protein	NA	NA	NA	NA
WP_107331965.1\|8991_9771_+	hypothetical protein	Q6UAV5	Klebsiella_phage	2.2e-114	79.7
WP_094818637.1\|9825_11748_-	protelomerase	Q6UAV6	Klebsiella_phage	2.3e-309	89.8
WP_087530330.1\|12456_13620_+	plasmid-partitioning protein SopA	Q6UAV7	Klebsiella_phage	1.0e-227	99.5
WP_040108014.1\|13622_14588_+	ParB/RepB/Spo0J family plasmid partition protein	Q6UAV8	Klebsiella_phage	8.5e-156	86.9
WP_087731916.1\|14665_16099_-\|tail	tail fiber domain-containing protein	A0A0P0IDN1	Klebsiella_phage	3.4e-84	48.9
WP_094818668.1\|16167_28872_-	DUF1983 domain-containing protein	Q6UAW1	Klebsiella_phage	0.0e+00	47.0
WP_017899002.1\|28934_29528_-\|tail	tail assembly protein	K7PHE5	Enterobacteria_phage	8.0e-80	77.2
WP_025368256.1\|29554_29977_-	hypothetical protein	A0A1B0VMH3	Pseudomonas_phage	1.1e-14	37.9
WP_032439857.1\|30018_30729_-	peptidase P60	Q6UAW4	Klebsiella_phage	3.8e-137	91.1
WP_023289191.1\|30730_31486_-\|tail	phage minor tail protein L	Q6UAW5	Klebsiella_phage	2.7e-125	80.9
WP_094818667.1\|31482_31821_-\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	4.9e-58	89.3
WP_107331964.1\|31820_35156_-\|tail	phage tail tape measure protein	Q6UAW7	Klebsiella_phage	0.0e+00	88.6
WP_071571862.1\|35155_35368_-	hypothetical protein	Q6UAW9	Klebsiella_phage	5.8e-33	90.3
WP_023339374.1\|35388_35754_-	hypothetical protein	Q6UAW8	Klebsiella_phage	8.1e-51	88.5
WP_014228913.1\|35810_36272_-\|tail	major tail shaft subunit	Q6UAX0	Klebsiella_phage	7.8e-67	83.7
WP_021462608.1\|36303_36705_-	hypothetical protein	Q6UAX1	Klebsiella_phage	1.1e-61	93.2
WP_017880258.1\|36701_37091_-	hypothetical protein	Q6UAX2	Klebsiella_phage	9.6e-58	86.0
WP_014228910.1\|37071_37410_-\|head,tail	head-tail adaptor protein	Q6UAX3	Klebsiella_phage	5.6e-54	91.1
WP_020317538.1\|37406_37724_-\|head,tail	phage gp6-like head-tail connector protein	Q6UAX4	Klebsiella_phage	1.5e-45	89.8
WP_016160673.1\|37704_37965_-	hypothetical protein	Q6UAX5	Klebsiella_phage	9.6e-22	60.5
WP_049013952.1\|38023_39310_-\|capsid	phage major capsid protein	Q6UAX6	Klebsiella_phage	3.0e-217	90.0
WP_107331970.1\|39387_40308_-	S49 family peptidase	Q6UAX7	Klebsiella_phage	3.3e-149	88.6
WP_107331969.1\|40344_41604_-\|portal	phage portal protein	Q6UAX8	Klebsiella_phage	1.2e-223	90.0
WP_032408955.1\|41603_41783_-	phage protein	Q6UAX9	Klebsiella_phage	2.4e-16	80.7
WP_032408956.1\|41776_43486_-\|terminase	terminase large subunit	Q6UAY0	Klebsiella_phage	0.0e+00	95.1
WP_032408957.1\|43520_43955_-\|terminase	terminase	Q6UAY1	Klebsiella_phage	2.4e-73	95.8
WP_032408995.1\|44171_44372_-	hypothetical protein	Q6UAR8	Klebsiella_phage	4.5e-11	92.4
WP_077254208.1\|44457_44889_-	hypothetical protein	Q6UAS0	Klebsiella_phage	2.6e-40	60.6
WP_023339407.1\|44885_45170_-	hypothetical protein	Q6UAS1	Klebsiella_phage	2.4e-05	37.5
WP_032414214.1\|45166_45529_-	HNH endonuclease	Q6UAS2	Klebsiella_phage	7.8e-62	92.5
WP_052251518.1\|45512_46784_-	hypothetical protein	Q6UAS3	Klebsiella_phage	1.2e-35	37.4
WP_032408961.1\|47052_47352_-	DUF4406 domain-containing protein	Q6UAS4	Klebsiella_phage	3.0e-51	96.0
WP_040108053.1\|47605_48082_-	hypothetical protein	Q6UAS7	Klebsiella_phage	3.9e-61	79.1
WP_040108055.1\|48098_48590_-	hypothetical protein	Q6UAS8	Klebsiella_phage	3.2e-82	90.2
WP_107331968.1\|48586_48898_-	hypothetical protein	Q6UAS9	Klebsiella_phage	4.8e-44	90.1
WP_107331967.1\|48956_50018_-	site-specific DNA-methyltransferase	Q6UAT0	Klebsiella_phage	3.5e-171	92.9
WP_032408967.1\|50335_50563_-	hypothetical protein	Q6UAT1	Klebsiella_phage	1.6e-28	84.0
WP_023339391.1\|50574_50796_-	hypothetical protein	O64358	Escherichia_phage	3.0e-32	90.4
WP_023339392.1\|50966_51275_+	type II toxin-antitoxin system RelE/ParE family toxin	Q6UAT3	Klebsiella_phage	3.9e-46	94.2
WP_023339393.1\|51274_51562_+	helix-turn-helix transcriptional regulator	Q6UAT4	Klebsiella_phage	1.7e-43	96.8
WP_023339394.1\|51606_51810_-	hypothetical protein	Q6UAT5	Klebsiella_phage	3.5e-19	76.6
WP_023339395.1\|51913_52141_-	hypothetical protein	O64355	Escherichia_phage	2.8e-25	80.3
WP_048292306.1\|52161_52488_-	hypothetical protein	Q6UAT7	Klebsiella_phage	1.1e-51	94.4
WP_064148019.1\|52818_53112_-	hypothetical protein	Q6UAT9	Klebsiella_phage	4.7e-41	84.5
WP_096913198.1\|53112_53445_-	hypothetical protein	Q6UAU1	Klebsiella_phage	3.3e-43	80.9
WP_048292305.1\|53572_54181_-	3'-5' exonuclease	Q6UAU3	Klebsiella_phage	3.0e-98	88.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP028797

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP028797_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028797_1

4512356-4512450

Orphan

Consensus_repeat	Method
ACTATGGTTTTTATGGTTTTTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP028797_1

>merge|NZ_CP028797|1|4512356-4512450|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATGGTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATGACTGTGGTTTTTATGGTTTTTATT

>NZ_CP028797|1|1|4512356-4512450|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATG	GTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATG
ACTGTGGTTTTTATGGTTTTTATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028797.1\|WP_002888327.1\|4519703_4520693_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_CP028797.1\|WP_002888370.1\|4498571_4499417_-\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
NZ_CP028797.1\|WP_020805925.1\|4522696_4522900_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028797.1\|WP_002888337.1\|4514206_4514905_+\|response-regulator	unknown	unknown	gnl\|CDD\|226931
NZ_CP028797.1\|WP_002888332.1\|4514937_4515765_-\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NZ_CP028797.1\|WP_002888345.1\|4510902_4512267_-\|2-hydroxycarboxylate-transporter-family-protein	unknown	unknown	gnl\|CDD\|377030
NZ_CP028797.1\|WP_002888347.1\|4510183_4510723_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|163145
NZ_CP028797.1\|WP_002888324.1\|4520689_4521511_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_CP028797.1\|WP_004151368.1\|4506530_4509437_+\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
NZ_CP028797.1\|WP_002888340.1\|4512591_4514217_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225827
NZ_CP028797.1\|WP_002888348.1\|4509449_4510109_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
NZ_CP028797.1\|WP_002888323.1\|4521513_4521891_+\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_CP028797.1\|WP_002888368.1\|4499754_4501464_+\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
NZ_CP028797.1\|WP_002888353.1\|4503114_4503810_+\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
NZ_CP028797.1\|WP_014342872.1\|4510685_4510874_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028797.1\|WP_002888321.1\|4521895_4522744_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	unknown	unknown	gnl\|CDD\|273208
NZ_CP028797.1\|WP_002888349.1\|4503985_4506343_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
NZ_CP028797.1\|WP_002888357.1\|4501474_4502977_+\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
NZ_CP028797.1\|WP_002888329.1\|4518411_4519698_+\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NZ_CP028797.1\|WP_004147026.1\|4516008_4518357_+\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158

Protein	Function_ID	Function_description	E-value
NZ_CP028797.1\|WP_002888327.1\|4519703_4520693_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NZ_CP028797.1\|WP_002888370.1\|4498571_4499417_-\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
NZ_CP028797.1\|WP_002888349.1\|4503985_4506343_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
NZ_CP028797.1\|WP_002888332.1\|4514937_4515765_-\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.63694e-164
NZ_CP028797.1\|WP_002888345.1\|4510902_4512267_-\|2-hydroxycarboxylate-transporter-family-protein	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	4.87969e-169
NZ_CP028797.1\|WP_002888347.1\|4510183_4510723_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	5.54697e-86
NZ_CP028797.1\|WP_002888324.1\|4520689_4521511_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147
NZ_CP028797.1\|WP_004151368.1\|4506530_4509437_+\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
NZ_CP028797.1\|WP_002888340.1\|4512591_4514217_+\|sensor-histidine-kinase	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	6.55037e-173
NZ_CP028797.1\|WP_002888348.1\|4509449_4510109_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	2.4454e-161
NZ_CP028797.1\|WP_002888323.1\|4521513_4521891_+\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	7.84855e-74
NZ_CP028797.1\|WP_002888368.1\|4499754_4501464_+\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
NZ_CP028797.1\|WP_002888353.1\|4503114_4503810_+\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	0
NZ_CP028797.1\|WP_002888357.1\|4501474_4502977_+\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
NZ_CP028797.1\|WP_002888321.1\|4521895_4522744_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
NZ_CP028797.1\|WP_002888337.1\|4514206_4514905_+\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	5.03078e-66
NZ_CP028797.1\|WP_002888329.1\|4518411_4519698_+\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
NZ_CP028797.1\|WP_004147026.1\|4516008_4518357_+\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0

>NZ_CP028797.1|WP_002888345.1|4510902_4512267_-|2-hydroxycarboxylate-transporter-family-protein
MSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLANVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>NZ_CP028797.1|WP_014342872.1|4510685_4510874_+|hypothetical-protein
MLTPAWAGVSTDINSSPTYDKYDSAWTVMMMVAIADRALIVTLNAEHLGYRTQIFSAFCSGK
>NZ_CP028797.1|WP_002888347.1|4510183_4510723_-|citrate-lyase-holo-[acyl-carrier-protein]-synthase
MSVDTPAQAGVSIDALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQSHPLGRLWDIDVICPQNGLVGRQSLGESQRRCLLCDEPAHACARSRRHDTDLVVARVEQMIDAWFARD
>NZ_CP028797.1|WP_002888348.1|4509449_4510109_+|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MAMENYNPPQDPWLVILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVARVWGHPQPAEGLVDLPLICDWPNRPKQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEALAMAPRLLLHAETLTITHPAYGNAMTFRAPIDF
>NZ_CP028797.1|WP_004151368.1|4506530_4509437_+|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYSRNDSPITRVMFNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAYNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEEAPSREYQAIEQLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLLAGNKLSDSELNTLGDLIGEQDIEPLLQAANSDREDAQAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPESIDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQGLIDAARNEADEKLTAELSRLEALKAVNPNIRDDELAGIESNRQQVMDALAQAGWRLDALRLIVVTHQ
>NZ_CP028797.1|WP_002888349.1|4503985_4506343_+|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQPIVGLYCRAHRQLMRLEKMLRDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPPLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFIASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIDRRFHEDKPALAIYNLQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLGDVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLIEGLAQPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEAQAAEIGRELVSHVNAWWAQELSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNQPYQDYVRETIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRAQQYQQRGTIKYVWTTSGPEPVDYQQSPLDYDHYLTKQLQPVAEGILPFVNDDFATIVTGQLGLF
>NZ_CP028797.1|WP_002888353.1|4503114_4503810_+|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQGIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>NZ_CP028797.1|WP_002888357.1|4501474_4502977_+|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDISALVDEYESSYRLTPAAQVHGEKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATVEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>NZ_CP028797.1|WP_002888368.1|4499754_4501464_+|ribulokinase
MAIAIGLDFGSDSVRALAVECASGAELATSVEWYPRWREGQYCDGANNRFRHHPRDYIESMEAALKSVLASLSAEQRADVVGIGVDSTGSTPAPVDAEGNVLALREEFADNPNAMFVLWKDHTAVEEAEAITRLCHQPGKEDYSRYIGGIYSSEWFWAKILHVTREDSAVAQAAASWVELCDWVPALLSGTTRPQDLRRGRCSAGHKSLWHESWGGLPPASFFDELDPIINQHLAWPLFTDTWTADVPVGTLSAEWAQRLGLSQSVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKESVGERTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQQQPALREQIKASQKQLLPALTEAWANNPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIPVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAGVYDDIPAAQQRMASQVETTLQPRPAQAQRFEQLYQRYQQWSVSAEQHYLPSAAKAEKAPQSKAALTH
>NZ_CP028797.1|WP_002888370.1|4498571_4499417_-|arabinose-operon-transcriptional-regulator-AraC
MAETQNDPLLPGYSFNAHLVTGLTPIEAQGYLDFFIDRPLGMKGYILNLTIRGEGVINNHGEQFVCRPGDMLLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWHEWLNWPTIFAQTGFFRPDEQWQARFGELFGQIVDAGQGAGRYSELLAINLLEQLLLRRMEAINESLHPPLDNRVREACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGVSVLGWREDQRISQAKLLLSTTRMPIATVGRNVGFEDQLYFSRVFKKCTGASPSEFRAGCE
>NZ_CP028797.1|WP_002888340.1|4512591_4514217_+|sensor-histidine-kinase
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSLRSKTPIVDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLGLSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEAHDAS
>NZ_CP028797.1|WP_002888337.1|4514206_4514905_+|response-regulator
MHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHATPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSDREAHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>NZ_CP028797.1|WP_002888332.1|4514937_4515765_-|co-chaperone-DjlA
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANVLMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDAATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>NZ_CP028797.1|WP_004147026.1|4516008_4518357_+|LPS-assembly-protein-LptD
MKKRIPSLLATMIASALYSQQGLAADLATQCMLGVPSYDRPLVEGRPGDLPVTINADHAKGNYPDNAVFTGNVDINQGNSRLRADEVQLHQQQAAGQAQPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQRGENRYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYLQLPVGDKRRSGFLIPNAKYSTKNGVEFSLPYYWNIAPNFDATITPHYMNKRGGVMWENEFRYLTQLGSGLTEFDYLPSDKVYEDDHSSDSNSRRWLFYWNHSGVIDQVWRLNADYTKVSDPDYFNDFSSKYGSSTDGYATQKFSAGYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDVGPFDTHLYGQVAHFVNSNNNMPEATRVHFEPTINLPLSNGWGSLNTEAKLLATHYQQSNLDKYNAANGTDYKESVSRVMPQFKVDGKMVFERDLQEGFTQTLEPRVQYLYVPYRDQSEIGNYDSTLLQSDYTGLFRDRTYSGLDRIASANQVTTGLTSRVYDAAAVERFNISVGQIYYFTESRTGDDNINWENNDTTGSLVWAGDTYWRIADEWGLRGGIQYDTRLDNVATGNGTIEYRRDENRLVQLNYRYASPEYIQATLPSYSTAAQYKQGISQVGMTASWPIVDRWSVVGAYYYDTNTRKAANQMLGVQYNSCCYAIRLGYERKVNGWNSNDNGGESKYDNTFGINIELRGLSSNYGLGTQQMLRSNILPYQSSL
>NZ_CP028797.1|WP_002888329.1|4518411_4519698_+|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>NZ_CP028797.1|WP_002888327.1|4519703_4520693_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MPETRKVVITPGEPAGIGPDLVVQLAQRDWPVELVICADGALLTDRAKRLGLPLSLLPYDPAQPPVPQRAGTLTLLNVPLNVPAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIAFTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDHDLRTKFGIAQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLEEMRAKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLAIKMIVNTQ
>NZ_CP028797.1|WP_002888324.1|4520689_4521511_+|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>NZ_CP028797.1|WP_002888323.1|4521513_4521891_+|Co2+/Mg2+-efflux-protein-ApaG
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>NZ_CP028797.1|WP_002888321.1|4521895_4522744_+|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKPLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAVAS
>NZ_CP028797.1|WP_020805925.1|4522696_4522900_-|hypothetical-protein
MFPVAGFVFFLKRSPGRQIAHKRRSGKALAATRQNDAAGSPDKAQRAAIREESGRDGFAFVEAFLPV

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

449875 : 483909

uncultured_Caudovirales_phage(73.33%)

protease,tail,terminase,head,capsid,portal,integrase,tRNA

attL 467483:467500|attR 484254:484271

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002919147.1\|449875_450823_-\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	2.2e-07	37.2
WP_002919144.1\|450837_451347_-	peptide deformylase	E3SLL2	Synechococcus_phage	2.6e-18	40.3
WP_002919139.1\|451475_452600_+	DNA-protecting protein DprA	NA	NA	NA	NA
WP_002919137.1\|452571_453045_+	DUF494 domain-containing protein	NA	NA	NA	NA
WP_004145330.1\|453070_453613_+	hypothetical protein	NA	NA	NA	NA
WP_002919132.1\|453617_454190_+	L-threonylcarbamoyladenylate synthase type 1 TsaC	NA	NA	NA	NA
WP_002919126.1\|454193_455012_+	shikimate dehydrogenase	NA	NA	NA	NA
WP_002919125.1\|455008_455266_+	DUF1488 domain-containing protein	NA	NA	NA	NA
WP_002919123.1\|455241_455796_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA
WP_002919103.1\|461591_461813_-	membrane protein	NA	NA	NA	NA
WP_002919102.1\|462106_465217_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA
WP_002919101.1\|465229_466369_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_004150972.1\|466747_467398_+	acrEF/envCD operon transcriptional regulator	NA	NA	NA	NA
467483:467500	attL	NA	NA	NA	NA
WP_004150971.1\|467673_468900_+\|integrase	site-specific integrase	A0A2H4JB45	uncultured_Caudovirales_phage	1.8e-150	62.2
WP_004150970.1\|468992_469934_+	hypothetical protein	NA	NA	NA	NA
WP_001547839.1\|470115_470400_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_004150969.1\|470410_471190_+	hypothetical protein	Q8HA02	Enterobacteria_phage	6.2e-40	51.5
WP_106918304.1\|472417_472687_+	host cell division inhibitor Icd-like protein	A0A2H4JGW3	uncultured_Caudovirales_phage	2.4e-44	94.4
WP_001549752.1\|472679_472868_+	hypothetical protein	NA	NA	NA	NA
WP_004150967.1\|472860_473175_+	hypothetical protein	NA	NA	NA	NA
WP_004150966.1\|473171_473540_+	hypothetical protein	A0A2H4JCX7	uncultured_Caudovirales_phage	3.7e-51	81.1
WP_001549749.1\|473536_473902_+	hypothetical protein	NA	NA	NA	NA
WP_004150965.1\|473901_476037_+	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	3.4e-205	62.4
WP_004150964.1\|476379_476715_+	hypothetical protein	NA	NA	NA	NA
WP_004150963.1\|476763_477276_-	hypothetical protein	NA	NA	NA	NA
WP_001549743.1\|477539_478706_+\|capsid	phage major capsid protein	A0A2H4JED2	uncultured_Caudovirales_phage	9.8e-207	95.9
WP_001547826.1\|478757_479318_+\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	1.2e-98	95.7
WP_004150962.1\|479319_480561_+\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	1.0e-230	96.5
WP_004150961.1\|480557_480893_+\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	3.7e-26	57.8
WP_001547824.1\|480889_481189_+\|head,tail	phage gp6-like head-tail connector protein	A0A2H4JD08	uncultured_Caudovirales_phage	3.4e-39	80.8
WP_004150959.1\|481188_481632_+	HNH endonuclease	A0A2H4JAS8	uncultured_Caudovirales_phage	2.8e-77	91.8
WP_004198610.1\|481758_481950_+	hypothetical protein	NA	NA	NA	NA
WP_000113647.1\|481907_482264_+\|terminase	phage terminase small subunit P27 family	A0A2H4JHS3	uncultured_Caudovirales_phage	5.5e-60	99.2
WP_004150955.1\|482247_483909_+\|terminase	terminase large subunit	A0A2H4JB64	uncultured_Caudovirales_phage	0.0e+00	98.0
484254:484271	attR	NA	NA	NA	NA

DBSCAN-SWA_2

770663 : 782686

Escherichia_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001067855.1\|770663_771368_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_042863651.1\|771488_774455_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	72.8
WP_000427619.1\|774533_775538_+\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_000954592.1\|775719_775896_-	DUF4102 domain-containing protein	T1S9J3	Salmonella_phage	1.0e-06	68.6
WP_000743213.1\|776017_776242_-	hypothetical protein	NA	NA	NA	NA
WP_001446887.1\|776238_776976_-	recombinase family protein	NA	NA	NA	NA
WP_001550559.1\|777082_777574_+	hypothetical protein	NA	NA	NA	NA
WP_001067855.1\|777607_778312_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_108458911.1\|778312_778846_+	hypothetical protein	NA	NA	NA	NA
WP_000019445.1\|779241_780222_-\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	1.0e-185	99.4
WP_015493087.1\|780735_781131_+	hypothetical protein	NA	NA	NA	NA
WP_015493086.1\|781127_781739_+	DUF2913 family protein	NA	NA	NA	NA
WP_015493085.1\|781735_782686_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	6.6e-76	55.6

DBSCAN-SWA_3

1249524 : 1298668

Salmonella_phage(80.0%)

terminase,tail,head,portal,capsid,plate,integrase,coat,lysis,tRNA,transposase

attL 1243471:1243485|attR 1259647:1259661

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1243471:1243485	attL	NA	NA	NA	NA
WP_000019473.1\|1249524_1250505_-\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1
WP_062955148.1\|1250550_1251549_-\|integrase	site-specific integrase	A0A1S6L016	Salmonella_phage	2.2e-183	94.5
WP_004151019.1\|1251551_1252181_-	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	1.4e-61	54.5
WP_001397669.1\|1252303_1252546_+	hypothetical protein	A0A1S6KZZ6	Salmonella_phage	4.0e-38	98.8
WP_004151018.1\|1252578_1253088_+	phage regulatory CII family protein	A0A1S6L008	Salmonella_phage	1.1e-77	85.8
WP_004151017.1\|1253095_1253296_+	DUF2724 domain-containing protein	A0A1S6L005	Salmonella_phage	4.5e-19	68.8
WP_004144796.1\|1253259_1253598_+	DUF5347 domain-containing protein	A0A218M4I7	Erwinia_phage	6.2e-29	58.0
WP_004151016.1\|1253665_1253899_+	DUF2732 family protein	A0A1S6L021	Salmonella_phage	6.0e-31	90.9
WP_004151014.1\|1253898_1254126_+	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	5.1e-35	92.0
WP_004151013.1\|1254122_1254974_+	DNA adenine methylase	A0A1S6L011	Salmonella_phage	2.2e-115	75.4
WP_004151012.1\|1254970_1257355_+	replication endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	87.9
WP_009483812.1\|1257584_1257836_+	hypothetical protein	NA	NA	NA	NA
WP_004152765.1\|1257835_1259320_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_004151011.1\|1259427_1259616_+	hypothetical protein	A0A1S6L006	Salmonella_phage	2.2e-23	90.3
WP_004151010.1\|1259627_1259861_+	DinI family protein	A0A0M4S6H1	Salmonella_phage	2.0e-34	96.1
1259647:1259661	attR	NA	NA	NA	NA
WP_004151009.1\|1259956_1260640_-	hypothetical protein	NA	NA	NA	NA
WP_004151008.1\|1260626_1261706_-	hypothetical protein	NA	NA	NA	NA
WP_004151007.1\|1261705_1262707_-	hypothetical protein	NA	NA	NA	NA
WP_024940854.1\|1263228_1263498_+	hypothetical protein	D2IZW1	Enterococcus_phage	1.4e-15	41.3
WP_004151006.1\|1263554_1264598_-\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	3.1e-172	85.6
WP_019405037.1\|1264597_1266361_-\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	91.8
WP_004151004.1\|1266501_1267335_+\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	4.4e-100	77.6
WP_004151003.1\|1267351_1268404_+\|capsid	phage major capsid protein, P2 family	A0A1S6KZZ3	Salmonella_phage	6.8e-175	91.0
WP_004134644.1\|1268407_1269061_+\|terminase	terminase endonuclease subunit	A0A1S6KZX1	Salmonella_phage	1.9e-90	80.0
WP_004151002.1\|1269156_1269621_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	1.5e-73	85.7
WP_004151001.1\|1269620_1269824_+\|tail	tail protein X	E5G6M9	Salmonella_phage	9.8e-30	89.6
WP_004134639.1\|1269827_1270043_+	hypothetical protein	E5G6N0	Salmonella_phage	6.1e-30	88.7
WP_004151000.1\|1270023_1270533_+	lysozyme	E5G6N1	Salmonella_phage	1.6e-81	85.2
WP_004150999.1\|1270537_1270921_+	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	1.9e-18	45.4
WP_004150998.1\|1270917_1271346_+\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	7.1e-54	82.5
WP_085955118.1\|1271275_1271479_+	hypothetical protein	A0A1S6KZX6	Salmonella_phage	3.0e-23	77.6
WP_004150997.1\|1271441_1271864_+\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	8.2e-63	83.2
WP_004150996.1\|1271856_1272303_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	2.5e-54	72.3
WP_004150995.1\|1272325_1273192_-	hypothetical protein	NA	NA	NA	NA
WP_004150994.1\|1273286_1273859_+\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	1.4e-76	70.8
WP_004150993.1\|1273855_1274218_+\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	8.4e-48	85.6
WP_004150992.1\|1274204_1275113_+\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	1.9e-109	68.9
WP_004152935.1\|1275105_1275777_+\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	3.2e-61	58.9
WP_004150990.1\|1275778_1277728_+\|coat	spore coat protein CotH	Q6QI97	Burkholderia_phage	1.0e-06	38.9
WP_004200602.1\|1277737_1278856_+	hypothetical protein	A0A248XD67	Klebsiella_phage	4.4e-55	38.0
WP_004150988.1\|1278907_1279981_+\|tail	phage tail protein	A0A1S6KZZ8	Salmonella_phage	6.6e-40	53.6
WP_004150987.1\|1280129_1281302_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	3.4e-207	91.5
WP_004150986.1\|1281311_1281827_+\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	1.4e-80	84.2
WP_004150985.1\|1281879_1282179_+\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	8.2e-33	78.0
WP_002896220.1\|1282193_1282313_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.2e-13	87.2
WP_004150984.1\|1282305_1284936_+\|tail	phage tail tape measure protein	E5FFG5	Burkholderia_phage	8.9e-115	41.9
WP_004150983.1\|1284932_1285418_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	5.2e-61	80.1
WP_004150982.1\|1285414_1286509_+	phage late control D family protein	E5G6Q3	Salmonella_phage	2.4e-170	83.6
WP_004150981.1\|1286575_1286794_+	positive regulator of late gene transcription	Q53ZE7	Salmonella_virus	1.9e-26	72.2
WP_004150980.1\|1286821_1287199_-	hypothetical protein	NA	NA	NA	NA
WP_002914164.1\|1287802_1288285_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	2.3e-29	47.4
WP_004188817.1\|1288395_1288872_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_002914161.1\|1288861_1289152_+	RnfH family protein	NA	NA	NA	NA
WP_002914160.1\|1289218_1289560_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_002914159.1\|1289707_1291369_-	DNA repair protein RecN	NA	NA	NA	NA
WP_002914158.1\|1291455_1292334_-	NAD(+) kinase	NA	NA	NA	NA
WP_002914155.1\|1292458_1293049_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_004149392.1\|1293168_1294455_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_002914153.1\|1294474_1295266_-	inner membrane protein YpjD	NA	NA	NA	NA
WP_002914152.1\|1295429_1296794_+	signal recognition particle protein	NA	NA	NA	NA
WP_002914149.1\|1297053_1297302_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_004150977.1\|1297320_1297869_+	ribosome maturation factor RimM	NA	NA	NA	NA
WP_002914147.1\|1297900_1298668_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA

DBSCAN-SWA_4

1327258 : 1379062

Salmonella_phage(19.15%)

terminase,protease,tail,holin,portal,head,capsid,integrase,tRNA

attL 1321327:1321344|attR 1382824:1382841

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1321327:1321344	attL	NA	NA	NA	NA
WP_002914089.1\|1327258_1328344_+\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
WP_002914088.1\|1328401_1329091_-	uracil-DNA glycosylase	A0A077BCN4	Equid_alphaherpesvirus	1.3e-57	53.0
WP_002914084.1\|1329404_1329788_+	autonomous glycyl radical cofactor GrcA	A0A193GZ98	Escherichia_phage	4.0e-32	79.3
WP_002914082.1\|1329833_1331165_-	ATP-dependent RNA helicase SrmB	E3T5E1	Cafeteria_roenbergensis_virus	6.2e-48	31.9
WP_002914079.1\|1331296_1332034_+\|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	NA	NA	NA	NA
WP_002914076.1\|1332018_1333638_-	L-aspartate oxidase	NA	NA	NA	NA
WP_002914074.1\|1334058_1334634_+	RNA polymerase sigma factor RpoE	NA	NA	NA	NA
WP_002914072.1\|1334666_1335317_+	anti-sigma-E factor RseA	NA	NA	NA	NA
WP_002914070.1\|1335316_1336273_+	sigma-E factor regulatory protein RseB	NA	NA	NA	NA
WP_004144354.1\|1336269_1336749_+	SoxR-reducing system protein RseC	NA	NA	NA	NA
WP_002914069.1\|1336934_1338734_+	elongation factor 4	E4ZFJ7	Streptococcus_phage	5.5e-23	25.4
WP_002914067.1\|1338749_1339724_+	signal peptidase I	NA	NA	NA	NA
WP_002914065.1\|1339973_1340654_+	ribonuclease III	A0A0P0YM82	Yellowstone_lake_phycodnavirus	1.6e-20	29.7
WP_002914063.1\|1340650_1341556_+	GTPase Era	NA	NA	NA	NA
WP_002914062.1\|1341567_1342305_+	DNA repair protein RecO	NA	NA	NA	NA
WP_002914059.1\|1342316_1343048_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
WP_004144351.1\|1343047_1343428_+	holo-ACP synthase	NA	NA	NA	NA
WP_094818641.1\|1343440_1343701_-	YfhL family 4Fe-4S dicluster ferredoxin	A0A1B1IWY9	uncultured_Mediterranean_phage	3.8e-18	53.5
WP_087473069.1\|1343915_1345313_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_071839937.1\|1345309_1345510_-	DNA-binding protein	NA	NA	NA	NA
WP_087473103.1\|1345529_1346084_-	3'-5' exoribonuclease	A0A192Y6E0	Salmonella_phage	4.5e-69	66.7
WP_094818642.1\|1346085_1346907_-	DUF550 domain-containing protein	S4TSR6	Salmonella_phage	3.7e-43	81.2
WP_094818643.1\|1346907_1347162_-	hypothetical protein	NA	NA	NA	NA
WP_094818644.1\|1347173_1347437_-	hypothetical protein	A0A2P0P958	Salmonella_phage	7.0e-28	69.0
WP_094818645.1\|1347436_1347679_-	hypothetical protein	H6WYL1	Enterobacter_phage	2.4e-22	58.2
WP_094818646.1\|1347678_1348071_-	hypothetical protein	NA	NA	NA	NA
WP_094818647.1\|1348063_1348288_-	hypothetical protein	S4TVX5	Salmonella_phage	6.4e-14	50.8
WP_032426413.1\|1348284_1348413_-	hypothetical protein	NA	NA	NA	NA
WP_094818648.1\|1348602_1349463_-	DNA-binding protein	A0A2H4J902	uncultured_Caudovirales_phage	1.0e-72	55.1
WP_080884803.1\|1349544_1350357_-	DUF2303 family protein	NA	NA	NA	NA
WP_094067207.1\|1350398_1350758_-	hypothetical protein	NA	NA	NA	NA
WP_094818649.1\|1351679_1352390_-	LexA family transcriptional regulator	K7P8B2	Enterobacteria_phage	4.0e-86	67.5
WP_004104275.1\|1352497_1352692_+	hypothetical protein	K7PLQ6	Enterobacteria_phage	3.6e-21	79.4
WP_094818650.1\|1352769_1353285_+	DNA-binding protein	A0A1C9II13	Salmonella_phage	8.8e-59	63.4
WP_094067208.1\|1353323_1353602_+	hypothetical protein	NA	NA	NA	NA
WP_094818651.1\|1353763_1354039_+	hypothetical protein	A0A1P8VVT6	Streptococcus_phage	8.7e-05	41.8
WP_029497188.1\|1354031_1355561_+	DEAD/DEAH box helicase	A0A286N2P9	Klebsiella_phage	6.6e-203	66.9
WP_094818652.1\|1355557_1356529_+	DNA primase	A0A286N2Q0	Klebsiella_phage	3.5e-109	61.1
WP_020317326.1\|1356498_1357143_+	bacteriophage Lambda NinG protein	A0A1W6JNX3	Morganella_phage	1.9e-39	54.3
WP_094067210.1\|1357139_1357784_+	DNA methyltransferase	I6PDF5	Cronobacter_phage	3.4e-84	67.8
WP_029497192.1\|1357773_1358178_+	antitermination protein	S5M7R9	Escherichia_phage	5.5e-32	54.0
WP_001294159.1\|1358387_1358774_+	membrane protein	A0A192Y8P2	Salmonella_phage	1.6e-57	90.6
WP_000243811.1\|1358760_1359042_+\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	4.8e-19	48.4
WP_094818653.1\|1359041_1359671_+	glycoside hydrolase family 19 protein	F1C591	Cronobacter_phage	6.5e-88	74.9
WP_094818654.1\|1359673_1359949_+	hypothetical protein	NA	NA	NA	NA
WP_094818655.1\|1359899_1360094_+	hypothetical protein	A0A286SGR9	Klebsiella_phage	1.6e-21	89.1
WP_094818656.1\|1360080_1360323_+	hypothetical protein	NA	NA	NA	NA
WP_094818657.1\|1360451_1360697_+	DUF2560 family protein	A0A286N2R1	Klebsiella_phage	1.2e-18	65.4
WP_094818658.1\|1360733_1361144_+	hypothetical protein	NA	NA	NA	NA
WP_021313631.1\|1361208_1361559_+	HNH endonuclease	A0A1B5FP94	Escherichia_phage	1.2e-51	80.9
WP_004884285.1\|1361689_1362184_+\|terminase	phage terminase small subunit P27 family	Q8HAD7	Salmonella_phage	1.2e-81	92.0
WP_032418747.1\|1362180_1363911_+\|terminase	terminase large subunit	Q8HAD6	Salmonella_phage	9.2e-302	83.4
WP_021313630.1\|1363920_1364106_+	hypothetical protein	A0A1B5FP99	Escherichia_phage	5.2e-14	63.9
WP_094818659.1\|1364105_1365335_+\|portal	phage portal protein	U5P411	Shigella_phage	1.7e-201	81.5
WP_004884313.1\|1365321_1365975_+\|head,protease	HK97 family phage prohead protease	Q8W628	Enterobacteria_phage	2.1e-105	87.4
WP_094818660.1\|1365989_1367198_+\|capsid	phage major capsid protein	A0A192Y5T6	Salmonella_phage	6.4e-193	84.2
WP_077254151.1\|1367224_1367440_+	hypothetical protein	M1FN89	Enterobacteria_phage	1.9e-07	42.4
WP_021313626.1\|1367436_1367757_+\|head,tail	phage gp6-like head-tail connector protein	Q8SBH7	Shigella_phage	4.8e-15	43.1
WP_032408655.1\|1367765_1368104_+\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	1.4e-41	74.1
WP_048997608.1\|1368100_1368550_+	HK97 gp10 family phage protein	Q9MCS9	Enterobacteria_phage	2.3e-63	83.2
WP_094818661.1\|1368546_1368894_+	DUF3168 domain-containing protein	K7PKL6	Enterobacterial_phage	2.0e-30	61.9
WP_021313623.1\|1368950_1369655_+	immunoglobulin domain-containing protein	K7PHL2	Enterobacterial_phage	2.5e-80	66.9
WP_029497345.1\|1369685_1370090_+\|tail	phage tail protein	K7PKV6	Enterobacterial_phage	3.2e-32	56.9
WP_042936677.1\|1370092_1370398_+	DUF4035 domain-containing protein	Q9MCS5	Enterobacteria_phage	3.6e-28	64.6
WP_019706055.1\|1370472_1370994_+	hypothetical protein	A0A0P0IYG9	Acinetobacter_phage	2.2e-09	45.2
WP_094818662.1\|1371056_1374638_+\|tail	phage tail tape measure protein	A0A2H4JHR1	uncultured_Caudovirales_phage	1.3e-254	61.6
WP_004177132.1\|1374658_1375132_+	hypothetical protein	A0A286S298	Klebsiella_phage	1.4e-55	62.1
WP_023302606.1\|1375118_1375595_+	DUF1833 family protein	A0A286S2B1	Klebsiella_phage	5.3e-50	64.6
WP_064157515.1\|1375607_1375988_+	hypothetical protein	A0A286S2A6	Klebsiella_phage	1.2e-60	83.3
WP_094818663.1\|1375984_1379062_+	kinase	A0A286S259	Klebsiella_phage	0.0e+00	62.0
1382824:1382841	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1436477 : 1501718

Salmonella_phage(67.74%)

terminase,tail,head,portal,capsid,plate,integrase,lysis,tRNA,transposase

attL 1437126:1437141|attR 1483389:1483404

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002913894.1\|1436477_1437644_+\|tRNA	bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN	NA	NA	NA	NA
1437126:1437141	attL	NA	NA	NA	NA
WP_004149336.1\|1437920_1438916_+	cytoskeleton protein RodZ	NA	NA	NA	NA
WP_002913892.1\|1438942_1440064_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA
WP_004149335.1\|1440155_1441430_+\|tRNA	histidine--tRNA ligase	NA	NA	NA	NA
WP_002913890.1\|1441464_1442085_+	YfgM family protein	NA	NA	NA	NA
WP_002913889.1\|1442095_1443274_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA
WP_002913888.1\|1443387_1444866_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA
WP_004151982.1\|1444983_1446063_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_004144303.1\|1446112_1446331_+	hypothetical protein	NA	NA	NA	NA
WP_004151981.1\|1446314_1447706_-	exodeoxyribonuclease VII large subunit	A0A2H4UVM9	Bodo_saltans_virus	6.3e-35	33.0
WP_004151980.1\|1447864_1449331_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	1.2e-87	38.7
WP_004151979.1\|1449398_1450976_+	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
WP_094818678.1\|1451166_1452417_+\|integrase	tyrosine-type recombinase/integrase	A0A1X9TCT6	Enterobacter_phage	3.1e-206	85.1
WP_032441415.1\|1452433_1452625_-	hypothetical protein	NA	NA	NA	NA
WP_094818679.1\|1452621_1453215_-	adenine methylase	T1SA14	Salmonella_phage	3.7e-109	91.9
WP_094818680.1\|1453211_1453370_-	DUF1317 family protein	T1SAR0	Salmonella_phage	6.7e-18	82.4
WP_009485475.1\|1453362_1453656_-	PerC family transcriptional regulator	T1S9J5	Salmonella_phage	4.0e-32	71.1
WP_004144294.1\|1453765_1454014_-	AlpA family phage regulatory protein	A0A0F6TJ45	Escherichia_coli_O157_typing_phage	2.8e-31	78.0
WP_064148642.1\|1454064_1455087_-	recombination protein RecT	Q858E1	Salmonella_phage	1.4e-180	95.6
WP_059065285.1\|1455096_1455996_-	endonuclease	Q858E0	Salmonella_phage	1.9e-157	91.0
WP_004164029.1\|1455992_1456292_-	hypothetical protein	A0A0F6R7M4	Escherichia_coli_O157_typing_phage	2.1e-20	54.5
WP_004144290.1\|1456656_1457238_-	helix-turn-helix transcriptional regulator	Q858D7	Salmonella_phage	7.1e-65	64.3
WP_094818681.1\|1457392_1457626_+	hypothetical protein	T1SAR5	Salmonella_phage	7.0e-24	66.2
WP_004152537.1\|1457772_1457982_+	hypothetical protein	A0A193GYW4	Enterobacter_phage	1.8e-26	78.3
WP_094818682.1\|1457981_1458749_+	primosomal protein	A0A193GZ86	Enterobacter_phage	9.8e-139	90.6
WP_032418532.1\|1458745_1459531_+	replication protein	A0A193GYX1	Enterobacter_phage	3.7e-133	87.7
WP_048328152.1\|1459650_1459998_+	DUF1064 domain-containing protein	A0A0F6R8N5	Escherichia_coli_O157_typing_phage	6.5e-50	82.6
WP_062955107.1\|1460190_1460601_+	hypothetical protein	A0A2P1MXC5	Escherichia_phage	4.3e-16	45.1
WP_032441402.1\|1460584_1460776_+	hypothetical protein	NA	NA	NA	NA
WP_032441401.1\|1460772_1461417_+	hypothetical protein	Q1MVG0	Enterobacteria_phage	8.0e-110	79.3
WP_072200041.1\|1461710_1462178_+	hypothetical protein	A0A2R2Z312	Escherichia_phage	1.3e-37	51.7
WP_029602865.1\|1462177_1462471_+	hypothetical protein	Q6UAT9	Klebsiella_phage	2.7e-44	86.6
WP_094818684.1\|1462866_1463625_+	DUF550 domain-containing protein	S4TSR6	Salmonella_phage	5.8e-51	47.7
WP_094818683.1\|1463617_1463899_+	hypothetical protein	A0A220NQY7	Salmonella_phage	3.6e-06	41.2
WP_064106727.1\|1463891_1464230_+	hypothetical protein	A0A193GYX4	Enterobacter_phage	6.4e-50	88.2
WP_009483812.1\|1464402_1464654_+	hypothetical protein	NA	NA	NA	NA
WP_004152765.1\|1464653_1466138_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_004150866.1\|1466236_1467181_-	hypothetical protein	NA	NA	NA	NA
WP_004152885.1\|1467192_1468071_-	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	1.7e-30	39.9
WP_000188448.1\|1468216_1468438_+	hypothetical protein	NA	NA	NA	NA
WP_000460893.1\|1468470_1468980_+	phage regulatory CII family protein	E5G6L3	Salmonella_phage	5.8e-87	98.8
WP_000956179.1\|1468987_1469188_+	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	1.6e-32	97.0
WP_000963473.1\|1469151_1469493_+	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	4.6e-56	99.1
WP_004150864.1\|1469560_1469794_+	DUF2732 family protein	E5G6L6	Salmonella_phage	4.1e-32	96.1
WP_000752622.1\|1469793_1470021_+	TraR/DksA family transcriptional regulator	E5G6L7	Salmonella_phage	6.0e-36	98.7
WP_004150863.1\|1470017_1470875_+	DNA adenine methylase	E5G6L8	Salmonella_phage	2.0e-156	95.4
WP_004150862.1\|1470871_1473286_+	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	97.5
WP_001154434.1\|1473439_1473628_+	hypothetical protein	E5G6M0	Salmonella_phage	5.5e-27	98.4
WP_001316229.1\|1473566_1473872_+	DinI family protein	E5G6M1	Salmonella_phage	4.7e-36	100.0
WP_000700647.1\|1473986_1474664_+	hypothetical protein	NA	NA	NA	NA
WP_004199124.1\|1474939_1476682_+	AIPR family protein	NA	NA	NA	NA
WP_002895959.1\|1476743_1477769_-\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	7.6e-171	86.7
WP_004150858.1\|1477768_1479535_-\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.0
WP_002895967.1\|1479677_1480511_+\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	6.3e-123	88.8
WP_002895972.1\|1480527_1481586_+\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	1.1e-180	93.1
WP_000059191.1\|1481589_1482240_+\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	8.7e-112	96.3
WP_002896151.1\|1482335_1482800_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	8.4e-77	89.0
WP_002896155.1\|1482799_1483003_+\|tail	tail protein X	A0A1S6KZY4	Salmonella_phage	1.3e-29	88.1
WP_002896158.1\|1483006_1483222_+	hypothetical protein	E5G6N0	Salmonella_phage	3.6e-30	90.1
WP_002896161.1\|1483202_1483712_+	lysozyme	E5G6N1	Salmonella_phage	2.1e-81	83.4
1483389:1483404	attR	NA	NA	NA	NA
WP_002896163.1\|1483716_1484100_+	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	2.1e-17	42.0
WP_002896168.1\|1484096_1484525_+\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	9.6e-51	77.9
WP_002896172.1\|1484620_1485052_+\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	9.9e-64	82.5
WP_002896175.1\|1485044_1485491_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	2.2e-50	71.2
WP_108458913.1\|1485487_1486027_-	hypothetical protein	NA	NA	NA	NA
WP_000019445.1\|1486008_1486989_-\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	1.0e-185	99.4
WP_002896177.1\|1487474_1488047_+\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	4.7e-77	72.3
WP_032441567.1\|1488043_1488406_+\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	4.9e-48	83.9
WP_002896182.1\|1488392_1489301_+\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	7.6e-106	66.9
WP_004150856.1\|1489293_1489893_+\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	1.3e-58	60.5
WP_004152882.1\|1489894_1492846_+	hypothetical protein	A0A2H4N7A3	Pectobacterium_phage	1.2e-06	50.9
WP_002896186.1\|1492849_1493581_+	hypothetical protein	NA	NA	NA	NA
WP_002896188.1\|1493577_1493781_+	hypothetical protein	NA	NA	NA	NA
WP_002896191.1\|1493810_1494887_+\|tail	phage tail protein	Q37842	Escherichia_phage	1.2e-25	44.8
WP_002896193.1\|1495025_1496198_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	1.9e-210	93.3
WP_002896201.1\|1496207_1496723_+\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	1.3e-81	85.4
WP_002896204.1\|1496775_1497075_+\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	3.7e-33	79.0
WP_002896220.1\|1497089_1497209_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.2e-13	87.2
WP_002896222.1\|1497201_1499829_+\|tail	phage tail tape measure protein	E5FFG5	Burkholderia_phage	5.6e-117	42.0
WP_002896224.1\|1499825_1500311_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	7.2e-63	75.6
WP_002896225.1\|1500307_1501408_+	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	4.9e-176	87.4
WP_000972391.1\|1501499_1501718_+	transcriptional activator Ogr/delta	Q53ZE7	Salmonella_virus	7.5e-20	69.0

DBSCAN-SWA_6

1536134 : 1545598

Dickeya_phage(16.67%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002896440.1\|1536134_1537250_+	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7
WP_004150848.1\|1537246_1539187_+	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	1.9e-37	40.5
WP_071528213.1\|1539126_1539309_+	hypothetical protein	NA	NA	NA	NA
WP_002896516.1\|1539263_1539485_-	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
WP_002896520.1\|1539810_1540128_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
WP_002896522.1\|1540158_1542438_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
WP_001040187.1\|1542558_1542777_-	translation initiation factor IF-1	NA	NA	NA	NA
WP_002898014.1\|1543130_1543832_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_004150847.1\|1543876_1545598_-	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	W8CYL7	Bacillus_phage	3.4e-14	22.4

DBSCAN-SWA_7

1919148 : 1946428

Enterobacteria_phage(40.0%)

integrase,holin,transposase

attL 1911126:1911141|attR 1933965:1933980

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1911126:1911141	attL	NA	NA	NA	NA
WP_004140269.1\|1919148_1919958_-	peptide ABC transporter ATP-binding protein SapF	A0A2H4PQG7	Staphylococcus_phage	2.1e-14	28.9
WP_004140266.1\|1919959_1920952_-	peptide ABC transporter ATP-binding protein SapD	G9BWD6	Planktothrix_phage	3.0e-07	27.2
WP_004151901.1\|1920951_1921842_-	peptide ABC transporter permease SapC	NA	NA	NA	NA
WP_004153574.1\|1922018_1923206_+\|integrase	site-specific integrase	K7PGY1	Enterobacteria_phage	1.1e-120	52.4
WP_004190725.1\|1923102_1923417_-	hypothetical protein	K7PM28	Enterobacteria_phage	1.6e-10	50.8
WP_004151899.1\|1923413_1924076_-	DNA methyltransferase	G8C7S6	Escherichia_phage	2.7e-105	84.6
WP_004151898.1\|1924072_1924501_-	hypothetical protein	M9NYX4	Enterobacteria_phage	7.5e-64	80.3
WP_004201102.1\|1924497_1925178_-	YqaJ viral recombinase family protein	A0A0M3ULE0	Salmonella_phage	8.2e-121	91.2
WP_004201103.1\|1925463_1926309_-	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	1.8e-69	59.2
WP_004201105.1\|1926324_1926609_-	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	1.1e-39	79.8
WP_004135674.1\|1926697_1926892_-	hypothetical protein	NA	NA	NA	NA
WP_004201108.1\|1927320_1927524_+	hypothetical protein	A0A192Y6Q5	Salmonella_phage	3.9e-18	71.6
WP_004201109.1\|1927605_1928682_-	ParA family protein	H2BD62	Pseudomonas_phage	9.1e-58	37.9
WP_019405077.1\|1928827_1928947_-	hypothetical protein	NA	NA	NA	NA
WP_004201113.1\|1928969_1929668_-	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	3.7e-108	84.1
WP_004201115.1\|1929779_1930007_+	helix-turn-helix domain-containing protein	Q76H55	Enterobacteria_phage	1.4e-24	77.1
WP_001548453.1\|1930047_1930269_+	hypothetical protein	G8EYH8	Enterobacteria_phage	6.9e-05	41.7
WP_004201117.1\|1930354_1931215_+	replication protein	K7PGT1	Enterobacteria_phage	1.0e-59	53.3
WP_004201118.1\|1931211_1932060_+	ATP-binding protein	K7PLU3	Enterobacteria_phage	5.1e-88	60.1
WP_004218528.1\|1932056_1932359_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_004196831.1\|1932414_1932660_+	hypothetical protein	NA	NA	NA	NA
WP_004218530.1\|1932867_1933896_-	hypothetical protein	NA	NA	NA	NA
WP_004218531.1\|1934416_1934884_+	recombination protein NinB	Q8VNP6	Enterobacteria_phage	3.4e-33	45.8
1933965:1933980	attR	NA	NA	NA	NA
WP_004243010.1\|1934864_1935032_+	NinE family protein	K7P7K0	Enterobacteria_phage	4.6e-09	62.5
WP_004218532.1\|1935028_1935697_+	serine/threonine protein phosphatase	K7P6H8	Enterobacteria_phage	1.4e-104	78.7
WP_004218533.1\|1935689_1936328_+	hypothetical protein	H6WRY9	Salmonella_phage	3.2e-74	69.8
WP_004218534.1\|1936324_1936465_+	YlcG family protein	NA	NA	NA	NA
WP_004232548.1\|1936464_1937154_+	antiterminator-like protein	I6PDF8	Cronobacter_phage	2.1e-55	53.1
WP_004218567.1\|1937791_1938103_+\|holin	holin	A0A286N2Q5	Klebsiella_phage	3.8e-49	100.0
WP_107331961.1\|1938099_1938639_+	glycoside hydrolase family 108 protein	A0A286N2Q6	Klebsiella_phage	5.7e-101	98.3
WP_001067855.1\|1938810_1939515_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_004152776.1\|1940096_1940519_+	hypothetical protein	K7P834	Enterobacteria_phage	3.6e-26	45.3
WP_009483812.1\|1941165_1941417_+	hypothetical protein	NA	NA	NA	NA
WP_004152765.1\|1941416_1942901_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_002901812.1\|1942980_1943400_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.4e-35	57.5
WP_002901813.1\|1943401_1944667_+	Y-family DNA polymerase	I6RSM4	Salmonella_phage	9.6e-208	82.7
WP_071531199.1\|1944742_1945570_-	FRG domain-containing protein	A0A1S6KZX9	Salmonella_phage	8.4e-19	30.2
WP_002901815.1\|1945756_1946428_-	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	4.5e-79	59.6

DBSCAN-SWA_8

1979361 : 2017827

uncultured_Caudovirales_phage(34.04%)

terminase,integrase

attL 1977442:1977456|attR 1986382:1986396

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1977442:1977456	attL	NA	NA	NA	NA
WP_004152144.1\|1979361_1980123_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	2.4e-20	32.5
WP_004152145.1\|1980339_1981872_+	HD domain-containing protein	A0A1B1ISR1	uncultured_Mediterranean_phage	1.1e-21	30.0
WP_016197745.1\|1982070_1982619_-	DJ-1/PfpI family protein	NA	NA	NA	NA
WP_004152147.1\|1982815_1983997_+\|integrase	site-specific integrase	A0A0M4QX09	Salmonella_phage	5.6e-202	84.2
WP_004152148.1\|1983977_1984220_-	hypothetical protein	A0A0M4RTZ2	Salmonella_phage	2.2e-20	73.8
WP_004152149.1\|1984398_1984878_-	hypothetical protein	NA	NA	NA	NA
WP_004152150.1\|1984874_1985087_-	hypothetical protein	A0A286S2B6	Klebsiella_phage	3.4e-33	98.6
WP_004152151.1\|1985083_1985308_-	hypothetical protein	A0A286S2B3	Klebsiella_phage	3.1e-29	89.2
WP_004154298.1\|1985297_1986008_-	DNA-binding protein	A0A286S260	Klebsiella_phage	2.1e-111	88.3
WP_004152153.1\|1986013_1986532_-	hypothetical protein	A0A286S1S7	Klebsiella_phage	1.7e-94	98.8
1986382:1986396	attR	NA	NA	NA	NA
WP_004152154.1\|1986636_1987464_-	hypothetical protein	Q8W654	Enterobacteria_phage	5.5e-111	84.0
WP_004152155.1\|1987460_1987655_-	hypothetical protein	NA	NA	NA	NA
WP_004152156.1\|1987651_1988077_-	hypothetical protein	A0A286S1S2	Klebsiella_phage	3.5e-53	77.9
WP_004152157.1\|1988263_1988518_-	hypothetical protein	A0A286SGR4	Klebsiella_phage	3.1e-41	97.6
WP_004152158.1\|1988510_1988876_-	hypothetical protein	A0A286S1Q6	Klebsiella_phage	6.9e-58	99.2
WP_004152159.1\|1989045_1989234_-	hypothetical protein	A0A286S1P8	Klebsiella_phage	4.6e-26	100.0
WP_004152160.1\|1989226_1989541_-	hypothetical protein	A0A286S1T9	Klebsiella_phage	1.0e-49	100.0
WP_004152161.1\|1989711_1990380_-	LexA family transcriptional regulator	A0A286S2B2	Klebsiella_phage	2.4e-125	99.5
WP_004152162.1\|1990477_1990699_+	helix-turn-helix transcriptional regulator	A0A286S2C1	Klebsiella_phage	3.0e-32	100.0
WP_004152163.1\|1990673_1990967_+	hypothetical protein	A0A286S2B5	Klebsiella_phage	2.8e-38	97.6
WP_004198228.1\|1991275_1992934_+	DEAD/DEAH box helicase	A0A286N2P9	Klebsiella_phage	0.0e+00	96.0
WP_004198233.1\|1992935_1993898_+	zinc-binding domain of primase-helicase family protein	A0A286N2Q0	Klebsiella_phage	4.8e-183	99.4
WP_004198239.1\|1993894_1994371_+	hypothetical protein	A0A286N2Q1	Klebsiella_phage	1.8e-90	100.0
WP_004152167.1\|1994367_1995150_+	antitermination protein	F1C595	Cronobacter_phage	7.2e-113	76.8
WP_004146526.1\|1995555_1995804_+	hypothetical protein	NA	NA	NA	NA
WP_004152169.1\|1995806_1996337_+	lysozyme	K7PLY1	Enterobacteria_phage	2.7e-79	77.1
WP_004153952.1\|1996333_1996723_+	lipase chaperone	A0A192Y6H8	Salmonella_phage	9.4e-21	49.2
WP_004152170.1\|1996957_1997278_+	hypothetical protein	NA	NA	NA	NA
WP_004152171.1\|1997379_1998132_+	hypothetical protein	A0A077KBY7	Edwardsiella_phage	4.0e-12	66.0
WP_004152172.1\|1998082_1999483_+\|terminase	PBSX family phage terminase large subunit	A0A077KAW0	Edwardsiella_phage	9.4e-188	69.0
WP_004152173.1\|1999720_2001172_+	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	3.8e-192	68.8
WP_004152174.1\|2001227_2001776_+	hypothetical protein	A0A0M4REK0	Salmonella_phage	3.0e-49	56.3
WP_004199270.1\|2001827_2003030_+	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	2.6e-106	54.1
WP_000528476.1\|2003033_2003528_+	hypothetical protein	A0A2H4JHM9	uncultured_Caudovirales_phage	4.2e-50	62.7
WP_001132269.1\|2003539_2004481_+	DUF2184 domain-containing protein	A0A2H4J191	uncultured_Caudovirales_phage	1.7e-137	77.1
WP_000725700.1\|2004520_2004802_+	hypothetical protein	NA	NA	NA	NA
WP_000113538.1\|2004770_2005190_+	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	3.3e-40	60.7
WP_000834982.1\|2005186_2005693_+	hypothetical protein	NA	NA	NA	NA
WP_001116156.1\|2005692_2006079_+	hypothetical protein	A0A2H4J1A4	uncultured_Caudovirales_phage	1.1e-48	78.2
WP_004152176.1\|2006173_2006614_+	hypothetical protein	A0A2H4J1A0	uncultured_Caudovirales_phage	1.6e-40	51.7
WP_004152177.1\|2006617_2007763_+	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	6.3e-166	76.9
WP_004199809.1\|2007773_2008214_+	DUF3277 family protein	A0A0M5M1K6	Salmonella_phage	3.3e-62	80.1
WP_004152564.1\|2008217_2008643_+	hypothetical protein	A0A2H4J2V6	uncultured_Caudovirales_phage	2.6e-40	63.4
WP_004152565.1\|2008678_2008831_+	hypothetical protein	A0A2H4J1A2	uncultured_Caudovirales_phage	7.6e-19	88.0
WP_004152566.1\|2008820_2010824_+	lytic transglycosylase domain-containing protein	A0A2H4J9N7	uncultured_Caudovirales_phage	1.2e-247	63.6
WP_004152567.1\|2010823_2011423_+	hypothetical protein	A0A2H4J1B3	uncultured_Caudovirales_phage	9.9e-54	57.6
WP_004152568.1\|2011423_2011726_+	hypothetical protein	A0A2H4J495	uncultured_Caudovirales_phage	2.0e-26	55.2
WP_004152569.1\|2011728_2012751_+	hypothetical protein	A0A2H4J1B2	uncultured_Caudovirales_phage	9.2e-100	54.2
WP_004152570.1\|2012750_2013092_+	hypothetical protein	A0A2H4J1A5	uncultured_Caudovirales_phage	1.8e-23	46.6
WP_004173705.1\|2013144_2013330_-	hypothetical protein	NA	NA	NA	NA
WP_004152571.1\|2013366_2013933_+	hypothetical protein	NA	NA	NA	NA
WP_004152572.1\|2013986_2014640_+	hypothetical protein	A0A2H4J8H6	uncultured_Caudovirales_phage	1.0e-59	63.5
WP_004152573.1\|2014641_2014995_+	hypothetical protein	A0A2H4J629	uncultured_Caudovirales_phage	2.3e-50	80.3
WP_107331963.1\|2014994_2016191_+	hypothetical protein	A0A0M4RD32	Salmonella_phage	3.0e-158	72.9
WP_004152575.1\|2016187_2016961_+	DUF2612 domain-containing protein	A0A2H4J1A9	uncultured_Caudovirales_phage	2.8e-77	54.4
WP_004152576.1\|2016960_2017827_+	hypothetical protein	A0A2H4IYR0	uncultured_Caudovirales_phage	1.9e-34	64.5

DBSCAN-SWA_9

2219308 : 2227385

Escherichia_phage(83.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004152236.1\|2219308_2219917_-	Tat proofreading chaperone DmsD	A0A077SLS7	Escherichia_phage	3.2e-23	35.3
WP_002903710.1\|2219958_2220816_-	dimethyl sulfoxide reductase anchor subunit	A0A077SK59	Escherichia_phage	9.0e-24	35.9
WP_004152235.1\|2220817_2221435_-	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	2.6e-73	58.1
WP_001067855.1\|2221577_2222282_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_094818672.1\|2222318_2224709_-	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	1.2e-203	48.3
WP_002903714.1\|2224859_2225129_-	DUF1161 domain-containing protein	NA	NA	NA	NA
WP_004219441.1\|2225230_2225941_+	YnfC family lipoprotein	NA	NA	NA	NA
WP_002903719.1\|2225934_2226495_-	spermidine N1-acetyltransferase	NA	NA	NA	NA
WP_002903720.1\|2226572_2226914_-	DUF1283 family protein	NA	NA	NA	NA
WP_002903722.1\|2227058_2227385_+	YnfA family protein	A0A218MNG8	uncultured_virus	1.1e-22	54.9

DBSCAN-SWA_10

2247351 : 2258238

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002210516.1\|2247351_2247972_-	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0
WP_048260141.1\|2247964_2249230_-	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	3.9e-233	99.3
WP_002903955.1\|2249241_2250144_-	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	2.6e-159	99.7
WP_002210513.1\|2250404_2251166_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_004176269.1\|2251186_2252047_-	class A broad-spectrum beta-lactamase SHV-11	A0A077SL40	Escherichia_phage	2.2e-155	99.3
WP_002904006.1\|2252344_2252605_+	hypothetical protein	A0A077SK33	Escherichia_phage	3.5e-40	97.7
WP_001620097.1\|2252691_2253780_+	AAA family ATPase	A0A077SLJ9	Escherichia_phage	8.0e-211	100.0
WP_004151612.1\|2253810_2255076_-	MFS transporter	NA	NA	NA	NA
WP_004151613.1\|2255130_2258238_-	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.6

DBSCAN-SWA_11

2927697 : 2984523

Staphylococcus_phage(28.57%)

tRNA,plate,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004175544.1\|2927697_2928282_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_004148779.1\|2928399_2929491_+	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_004200293.1\|2929571_2929901_-	DUF1869 domain-containing protein	NA	NA	NA	NA
WP_002910453.1\|2929984_2930899_-	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004200294.1\|2931030_2932446_-	membrane protein	NA	NA	NA	NA
WP_004175538.1\|2932465_2932909_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_004189400.1\|2932911_2933454_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_025403903.1\|2933428_2934475_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_004200296.1\|2934474_2936238_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_004200298.1\|2936295_2939784_-	hypothetical protein	NA	NA	NA	NA
WP_004198077.1\|2939767_2940925_-	hypothetical protein	NA	NA	NA	NA
WP_002910497.1\|2940928_2941195_-	PAAR domain-containing protein	NA	NA	NA	NA
WP_062955036.1\|2941437_2941947_-	hypothetical protein	NA	NA	NA	NA
WP_062955037.1\|2941943_2942264_-	hypothetical protein	NA	NA	NA	NA
WP_020802731.1\|2942260_2942452_-	hypothetical protein	NA	NA	NA	NA
WP_062955038.1\|2942448_2942958_-	hypothetical protein	NA	NA	NA	NA
WP_004153085.1\|2943416_2943746_-	hypothetical protein	NA	NA	NA	NA
WP_021464429.1\|2943742_2943925_-	hypothetical protein	NA	NA	NA	NA
WP_004175505.1\|2943925_2945281_-	hypothetical protein	NA	NA	NA	NA
WP_020321930.1\|2945574_2945955_-	hypothetical protein	NA	NA	NA	NA
WP_063048274.1\|2946732_2947134_-	hypothetical protein	NA	NA	NA	NA
WP_099143948.1\|2947927_2948443_-	hypothetical protein	NA	NA	NA	NA
WP_000019473.1\|2948609_2949590_+\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1
WP_101963435.1\|2949628_2950999_-	S-type Pyocin	NA	NA	NA	NA
WP_062955013.1\|2951022_2953509_-	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_062955014.1\|2953967_2955665_-	OmpA family protein	NA	NA	NA	NA
WP_062955015.1\|2955668_2956322_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_004200314.1\|2956318_2957659_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_004200315.1\|2957896_2958163_-	hypothetical protein	NA	NA	NA	NA
WP_002910650.1\|2958226_2958556_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA
WP_002910652.1\|2958670_2959210_+	DUF2058 domain-containing protein	NA	NA	NA	NA
WP_014907357.1\|2959235_2959934_-	RluA family pseudouridine synthase	A0A2H4UV25	Bodo_saltans_virus	2.6e-05	27.2
WP_002910657.1\|2960124_2960607_+	cold shock domain-containing protein	NA	NA	NA	NA
WP_004152315.1\|2960716_2961616_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004152314.1\|2961590_2962397_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004175494.1\|2962411_2963707_-	MFS transporter	Q6JIH2	Burkholderia_virus	9.6e-62	36.8
WP_004189341.1\|2964010_2964937_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004189338.1\|2965035_2965512_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_004148802.1\|2965561_2967205_-	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	5.7e-136	50.4
WP_002910720.1\|2967488_2968382_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004175491.1\|2968387_2969107_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.5e-11	26.0
WP_004148803.1\|2969103_2969979_-	ATP-binding cassette domain-containing protein	A0A285PWH2	Cedratvirus	1.5e-10	25.5
WP_004148804.1\|2969975_2971262_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA
WP_004175489.1\|2971271_2972186_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_062955016.1\|2972295_2973411_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_062955027.1\|2973841_2976136_-	formate C-acetyltransferase	A0A2P0VNR5	Tetraselmis_virus	3.0e-159	41.7
WP_094818704.1\|2976164_2977373_-	propionate kinase	NA	NA	NA	NA
WP_004145486.1\|2977400_2978732_-	threonine/serine transporter TdcC	NA	NA	NA	NA
WP_002910762.1\|2978757_2979747_-	bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA	NA	NA	NA
WP_002910764.1\|2979840_2980782_-	transcriptional regulator TdcA	NA	NA	NA	NA
WP_009484364.1\|2981185_2981371_+	hypothetical protein	NA	NA	NA	NA
WP_002910767.1\|2981398_2981572_+	hypothetical protein	NA	NA	NA	NA
WP_009484363.1\|2981558_2982359_-	PhnD/SsuA/transferrin family substrate-binding protein	NA	NA	NA	NA
WP_050597911.1\|2982351_2983365_-	fatty acid desaturase	NA	NA	NA	NA
WP_002910830.1\|2983776_2984523_-\|protease	proteasome-type protease	NA	NA	NA	NA

DBSCAN-SWA_12

3243487 : 3257333

Escherichia_phage(41.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015958693.1\|3243487_3244042_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	1.9e-51	57.6
WP_048996045.1\|3244056_3244947_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	3.7e-28	34.2
WP_063002077.1\|3244978_3245848_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	5.7e-111	67.0
WP_073547076.1\|3245861_3246926_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	2.6e-105	55.0
WP_062955151.1\|3247765_3248770_+	NAD-dependent epimerase	E3T4Y8	Cafeteria_roenbergensis_virus	4.0e-31	29.2
WP_000019445.1\|3249235_3250216_-\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	1.0e-185	99.4
WP_094818698.1\|3250214_3250490_+	small membrane protein	NA	NA	NA	NA
WP_000704907.1\|3250918_3252085_-	UDP-glucose 6-dehydrogenase	M1I798	Paramecium_bursaria_Chlorella_virus	7.0e-112	54.7
WP_004175260.1\|3252264_3252819_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	1.9e-51	57.6
WP_048996045.1\|3252833_3253724_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	3.7e-28	34.2
WP_062956182.1\|3253755_3254625_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	3.4e-111	67.4
WP_062955056.1\|3254638_3255703_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	4.4e-105	54.7
WP_062955058.1\|3255926_3257333_-	NADP-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	3.6e-38	28.7

DBSCAN-SWA_13

3299267 : 3306173

Bacillus_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_062955084.1\|3299267_3300746_+	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	8.5e-30	28.3
WP_004175198.1\|3300742_3301465_+	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
WP_004144192.1\|3301783_3303145_+\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	1.8e-207	94.8
WP_002912636.1\|3303390_3304284_+	lipid kinase YegS	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
WP_004899467.1\|3304525_3305299_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.9e-26	36.7
WP_004175147.1\|3305309_3306173_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.7e-10	27.5

DBSCAN-SWA_14

3607422 : 3669264

Salmonella_phage(35.29%)

tail,protease,terminase,holin,integrase,tRNA,transposase

attL 3631890:3631905|attR 3670305:3670320

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004152006.1\|3607422_3609426_-\|tRNA	tRNA(Met) cytidine acetyltransferase	NA	NA	NA	NA
WP_002913800.1\|3609435_3610311_-	neutral zinc metallopeptidase	NA	NA	NA	NA
WP_002913801.1\|3610430_3611144_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A127KMU1	Cyanophage	1.1e-38	35.7
WP_002913802.1\|3611359_3612394_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA
WP_002913803.1\|3612410_3613289_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA
WP_004145648.1\|3613376_3614009_+	glycine cleavage system transcriptional repressor	NA	NA	NA	NA
WP_002913805.1\|3614012_3614483_+	thioredoxin-dependent thiol peroxidase	NA	NA	NA	NA
WP_002913806.1\|3614544_3615606_-	AI-2E family transporter	NA	NA	NA	NA
WP_002913807.1\|3615828_3617292_+\|protease	beta-barrel assembly-enhancing protease	NA	NA	NA	NA
WP_002913810.1\|3617301_3617661_+	arsenate reductase (glutaredoxin)	NA	NA	NA	NA
WP_002913812.1\|3617788_3618700_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	3.5e-74	58.8
WP_020947395.1\|3618696_3619398_-	DnaA inactivator Hda	NA	NA	NA	NA
WP_002913824.1\|3619496_3620783_-	uracil permease	Q9KX94	Enterobacteria_phage	1.9e-65	38.1
WP_002913827.1\|3620878_3621505_-	uracil phosphoribosyltransferase	NA	NA	NA	NA
WP_002913829.1\|3621722_3623156_-	6-phospho-beta-glucosidase	NA	NA	NA	NA
WP_002913833.1\|3623165_3624059_-	ROK family protein	NA	NA	NA	NA
WP_002913836.1\|3624322_3625360_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	8.2e-72	44.5
WP_004152007.1\|3625356_3625998_+	phosphoribosylglycinamide formyltransferase	E3SNR5	Prochlorococcus_phage	1.2e-28	41.1
WP_002913838.1\|3626178_3628239_+	polyphosphate kinase 1	NA	NA	NA	NA
WP_002913839.1\|3628242_3629775_+	exopolyphosphatase	NA	NA	NA	NA
WP_002913841.1\|3629828_3632057_-	sensor domain-containing phosphodiesterase	NA	NA	NA	NA
3631890:3631905	attL	NA	NA	NA	NA
WP_002913843.1\|3632409_3632601_+	DUF2633 family protein	G9L6F2	Escherichia_phage	3.3e-19	79.3
WP_002913846.1\|3632697_3633585_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_002913847.1\|3633682_3634915_+	MFS transporter	NA	NA	NA	NA
WP_004162150.1\|3635208_3636387_+	anaerobic sulfatase maturase	NA	NA	NA	NA
WP_004152009.1\|3636370_3638239_+	sulfatase-like hydrolase/transferase	A0A2P0VMN7	Tetraselmis_virus	2.6e-07	22.6
WP_094818609.1\|3638435_3638933_-	DUF2514 family protein	A0A193GYU6	Enterobacter_phage	2.1e-57	73.3
WP_094818610.1\|3638929_3639559_-	glycoside hydrolase family 19 protein	Q858F0	Salmonella_phage	8.1e-91	77.0
WP_023339240.1\|3639548_3639854_-\|holin	phage holin family protein	A0A193GYK3	Enterobacter_phage	2.7e-39	81.4
WP_062955010.1\|3639840_3640245_-	hypothetical protein	T1SA79	Salmonella_phage	8.7e-54	81.1
WP_094818611.1\|3640794_3641046_-	hypothetical protein	NA	NA	NA	NA
WP_094818612.1\|3641042_3643256_-	hypothetical protein	A0A0U3DL17	Klebsiella_phage	8.9e-108	42.9
WP_094818613.1\|3643407_3643704_+	hypothetical protein	T1SA06	Salmonella_phage	3.1e-24	64.3
WP_071587176.1\|3643831_3644167_+	hypothetical protein	NA	NA	NA	NA
WP_004141317.1\|3644090_3644636_+	DUF2335 domain-containing protein	NA	NA	NA	NA
WP_094818614.1\|3645011_3645707_+	anti-repressor protein	A0A193GYJ9	Enterobacter_phage	2.6e-61	52.5
WP_025860592.1\|3645949_3646162_+	hypothetical protein	NA	NA	NA	NA
WP_048293155.1\|3646158_3646536_+	hypothetical protein	NA	NA	NA	NA
WP_004221292.1\|3646628_3646781_+	hypothetical protein	G9L6D9	Escherichia_phage	1.9e-14	85.7
WP_094818615.1\|3646823_3647120_-	hypothetical protein	A0A2R9YJP3	Escherichia_phage	9.2e-45	90.6
WP_094818616.1\|3647164_3647779_-	hypothetical protein	NA	NA	NA	NA
WP_094818617.1\|3647788_3651178_-	hypothetical protein	G9L6D4	Escherichia_phage	5.3e-120	41.6
WP_024622832.1\|3651177_3653922_-	hypothetical protein	A0A193GYI3	Enterobacter_phage	7.4e-96	39.7
WP_004197440.1\|3653934_3654432_-	hypothetical protein	A0A0F6TJ56	Escherichia_coli_O157_typing_phage	4.0e-24	43.6
WP_094818618.1\|3654424_3654895_-	hypothetical protein	Q858G2	Salmonella_phage	1.1e-44	54.6
WP_094818619.1\|3654896_3657374_-	hypothetical protein	G9L6D0	Escherichia_phage	2.8e-267	56.4
WP_004197381.1\|3657373_3657985_-	hypothetical protein	T1SAQ2	Salmonella_phage	9.2e-47	48.8
WP_024622837.1\|3658033_3658312_-	hypothetical protein	T1SA01	Salmonella_phage	1.1e-20	58.9
WP_004152466.1\|3658304_3658697_-	hypothetical protein	T1SA71	Salmonella_phage	1.5e-55	89.9
WP_004197367.1\|3658706_3659714_-	bbp17	T1S9H9	Salmonella_phage	2.1e-181	92.8
WP_004221310.1\|3659726_3660113_-	peptidase	T1SAP9	Salmonella_phage	1.9e-34	58.6
WP_004152470.1\|3660439_3660745_-	hypothetical protein	Q2A090	Sodalis_phage	1.1e-16	51.3
WP_004149313.1\|3660741_3662421_-\|tail	tail protein	T1S9Z7	Salmonella_phage	3.6e-194	59.3
WP_004152472.1\|3662424_3662628_-	hypothetical protein	NA	NA	NA	NA
WP_094818620.1\|3662649_3662838_-	hypothetical protein	NA	NA	NA	NA
WP_040173633.1\|3663335_3663707_+	phage family protein	A0A0F6TJP2	Escherichia_coli_O157_typing_phage	3.0e-61	94.3
WP_094818621.1\|3663751_3665227_-\|terminase	terminase	Q858H3	Salmonella_phage	4.2e-279	92.4
WP_094818622.1\|3665223_3665844_-\|terminase	terminase small subunit	T1SBI8	Salmonella_phage	1.1e-76	73.2
WP_017896964.1\|3665901_3666231_-	hypothetical protein	K7PGV5	Enterobacterial_phage	3.0e-28	56.1
WP_004152765.1\|3666308_3667793_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_009483812.1\|3667792_3668044_-	hypothetical protein	NA	NA	NA	NA
WP_004151720.1\|3668211_3669264_+\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	1.0e-106	57.0
3670305:3670320	attR	NA	NA	NA	NA

DBSCAN-SWA_15

4249069 : 4260722

Enterobacteria_phage(70.0%)

integrase

attL 4249519:4249533|attR 4272575:4272589

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004144574.1\|4249069_4250173_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	4.8e-62	40.5
4249519:4249533	attL	NA	NA	NA	NA
WP_002889940.1\|4250183_4251437_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	8.9e-89	44.9
WP_002889938.1\|4251789_4252980_+\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	6.4e-145	62.7
WP_004152029.1\|4252967_4253918_+	AAA family ATPase	A0A1X9IGI7	Lactococcus_phage	1.2e-13	27.1
WP_004152979.1\|4253917_4254343_+	hypothetical protein	NA	NA	NA	NA
WP_004152202.1\|4254910_4255477_-	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	9.7e-59	63.8
WP_004152203.1\|4255494_4255740_-	hypothetical protein	Q7M294	Enterobacteria_phage	5.5e-19	56.8
WP_062956184.1\|4255736_4256474_-	hypothetical protein	Q7M2A2	Enterobacteria_phage	1.9e-70	59.4
WP_002889915.1\|4257015_4257282_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	2.6e-30	71.6
WP_024940872.1\|4257278_4257836_+	ash family protein	Q7M2A7	Enterobacteria_phage	1.8e-33	70.4
WP_002889911.1\|4257832_4258060_+	hypothetical protein	NA	NA	NA	NA
WP_002889897.1\|4258056_4258377_+	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_002889890.1\|4258388_4260722_+	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	82.2
4272575:4272589	attR	NA	NA	NA	NA

DBSCAN-SWA_16

4728959 : 4741822

Enterobacteria_phage(62.5%)

integrase,transposase

attL 4730438:4730452|attR 4743370:4743384

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004152207.1\|4728959_4731293_-	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	83.9
4730438:4730452	attL	NA	NA	NA	NA
WP_004152206.1\|4731307_4731628_-	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_004152205.1\|4731624_4731852_-	hypothetical protein	NA	NA	NA	NA
WP_004153681.1\|4731848_4732397_-	ash family protein	Q7M2A7	Enterobacteria_phage	1.1e-30	69.4
WP_004152204.1\|4733220_4733958_+	hypothetical protein	Q7M2A2	Enterobacteria_phage	1.1e-70	59.4
WP_004152203.1\|4733954_4734200_+	hypothetical protein	Q7M294	Enterobacteria_phage	5.5e-19	56.8
WP_004152202.1\|4734217_4734784_+	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	9.7e-59	63.8
WP_004152201.1\|4735524_4736604_+	hypothetical protein	NA	NA	NA	NA
WP_094818671.1\|4736639_4736762_+	hypothetical protein	NA	NA	NA	NA
WP_000019445.1\|4736800_4737781_-\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	1.0e-185	99.4
WP_094818702.1\|4737825_4738341_+	hypothetical protein	NA	NA	NA	NA
WP_000019445.1\|4738703_4739684_+\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	1.0e-185	99.4
WP_073547088.1\|4739665_4740502_+	hypothetical protein	NA	NA	NA	NA
WP_004152198.1\|4740559_4741822_-\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	8.2e-74	40.7
4743370:4743384	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP028796

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP028794

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP028797

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection