CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP027452	Escherichia coli strain 2014C-3338 chromosome, complete genome	6 crisprs	DinG,DEDDh,WYL,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	0	16	10	0
NZ_CP027453	Escherichia coli strain 2014C-3338 plasmid unnamed, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP027452_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP027452_1

173657-173748

Orphan

Consensus_repeat	Method
CCACCTTTTTTACCTGCTTCAGATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP027452_1

>merge|NZ_CP027452|1|173657-173748|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGCGCGCTGCGGGTCATTTTTGAAATTACCCCCGCTGTGCTGTCCACCTTTTTTACCTGCTTCTGATGC

>NZ_CP027452|1|1|173657-173748|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGC	GCGCTGCGGGTCATTTTTGAAATTACCCCCGCTGTGCTGT
CCACCTTTTTTACCTGCTTCTGATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP027452.1\|WP_001815788.1\|169190_169883_+\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	unknown	unknown	gnl\|CDD\|163356
NZ_CP027452.1\|WP_000191701.1\|167173_167812_-\|HTH-type-transcriptional-regulator-RutR	unknown	unknown	gnl\|CDD\|184970
NZ_CP027452.1\|WP_042106216.1\|179006_181553_-\|trimethylamine-N-oxide-reductase-TorA	unknown	unknown	gnl\|CDD\|237909
NZ_CP027452.1\|WP_001143120.1\|174788_175016_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182285
NZ_CP027452.1\|WP_001317757.1\|168099_169191_+\|pyrimidine-utilization-protein-A	unknown	unknown	gnl\|CDD\|163355
NZ_CP027452.1\|WP_106889353.1\|172214_173543_+\|pyrimidine-utilization-transport-protein-G	unknown	unknown	gnl\|CDD\|132655
NZ_CP027452.1\|WP_000420644.1\|176829_177750_+\|curved-DNA-binding-protein	unknown	unknown	gnl\|CDD\|182347
NZ_CP027452.1\|WP_001264952.1\|183519_184548_-\|TMAO-reductase-system-periplasmic-protein-TorT	unknown	unknown	gnl\|CDD\|236801
NZ_CP027452.1\|WP_000979523.1\|162907_163117_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027452.1\|WP_001317758.1\|163171_167134_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|236989
NZ_CP027452.1\|WP_001120112.1\|182854_183547_+\|two-component-system-response-regulator-TorR	unknown	unknown	gnl\|CDD\|182711
NZ_CP027452.1\|WP_042106215.1\|178410_179010_-\|molecular-chaperone-TorD	unknown	unknown	gnl\|CDD\|235326
NZ_CP027452.1\|WP_000024560.1\|177749_178055_+\|chaperone-modulator-CbpM	unknown	unknown	gnl\|CDD\|182346
NZ_CP027452.1\|WP_001028089.1\|171699_172194_+\|pyrimidine-utilization-flavin-reductase-protein-F	unknown	unknown	gnl\|CDD\|132654
NZ_CP027452.1\|WP_001018496.1\|161240_162749_-\|sodium/proline-symporter-PutP	unknown	unknown	gnl\|CDD\|185317
NZ_CP027452.1\|WP_042104023.1\|170288_171101_+\|pyrimidine-utilization-protein-D	unknown	unknown	gnl\|CDD\|211851
NZ_CP027452.1\|WP_053290908.1\|175053_176295_-\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	unknown	unknown	gnl\|CDD\|182284
NZ_CP027452.1\|WP_001230244.1\|181552_182725_-\|pentaheme-c-type-cytochrome-TorC	unknown	unknown	gnl\|CDD\|184992
NZ_CP027452.1\|WP_001151437.1\|174171_174768_+\|NAD(P)H:quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|179647
NZ_CP027452.1\|WP_001126780.1\|169894_170281_+\|pyrimidine-utilization-protein-C	unknown	unknown	gnl\|CDD\|274677

Protein	Function_ID	Function_description	E-value
NZ_CP027452.1\|WP_001815788.1\|169190_169883_+\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	gnl\|CDD\|163356	TIGR03614, RutB, pyrimidine utilization protein B.	2.69837e-169
NZ_CP027452.1\|WP_000191701.1\|167173_167812_-\|HTH-type-transcriptional-regulator-RutR	gnl\|CDD\|184970	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional.	1.3356e-153
NZ_CP027452.1\|WP_042106216.1\|179006_181553_-\|trimethylamine-N-oxide-reductase-TorA	gnl\|CDD\|237909	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA.	0
NZ_CP027452.1\|WP_001126780.1\|169894_170281_+\|pyrimidine-utilization-protein-C	gnl\|CDD\|274677	TIGR03610, RutC, pyrimidine utilization protein C. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the endoribonuclease L-PSP family defined by pfam01042.	5.99808e-85
NZ_CP027452.1\|WP_001317757.1\|168099_169191_+\|pyrimidine-utilization-protein-A	gnl\|CDD\|163355	TIGR03612, RutA, pyrimidine utilization protein A. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the luciferase family defined by pfam00296 and is likely a FMN-dependent monoxygenase. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP027452.1\|WP_001264952.1\|183519_184548_-\|TMAO-reductase-system-periplasmic-protein-TorT	gnl\|CDD\|236801	PRK10936, PRK10936, TMAO reductase system periplasmic protein TorT; Provisional.	1.45013e-176
NZ_CP027452.1\|WP_000420644.1\|176829_177750_+\|curved-DNA-binding-protein	gnl\|CDD\|182347	PRK10266, PRK10266, curved DNA-binding protein.	0
NZ_CP027452.1\|WP_106889353.1\|172214_173543_+\|pyrimidine-utilization-transport-protein-G	gnl\|CDD\|132655	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).	0
NZ_CP027452.1\|WP_001317758.1\|163171_167134_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	gnl\|CDD\|236989	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed.	0
NZ_CP027452.1\|WP_001120112.1\|182854_183547_+\|two-component-system-response-regulator-TorR	gnl\|CDD\|182711	PRK10766, PRK10766, two-component system response regulator TorR.	5.89892e-138
NZ_CP027452.1\|WP_042106215.1\|178410_179010_-\|molecular-chaperone-TorD	gnl\|CDD\|235326	PRK04976, torD, chaperone protein TorD; Validated.	1.3953e-81
NZ_CP027452.1\|WP_000024560.1\|177749_178055_+\|chaperone-modulator-CbpM	gnl\|CDD\|182346	PRK10265, PRK10265, chaperone modulator CbpM.	5.75956e-65
NZ_CP027452.1\|WP_001143120.1\|174788_175016_+\|hypothetical-protein	gnl\|CDD\|182285	PRK10174, PRK10174, hypothetical protein; Provisional.	8.66725e-44
NZ_CP027452.1\|WP_001018496.1\|161240_162749_-\|sodium/proline-symporter-PutP	gnl\|CDD\|185317	PRK15419, PRK15419, sodium/proline symporter PutP.	0
NZ_CP027452.1\|WP_042104023.1\|170288_171101_+\|pyrimidine-utilization-protein-D	gnl\|CDD\|211851	TIGR03611, RutD, pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.	2.22748e-139
NZ_CP027452.1\|WP_053290908.1\|175053_176295_-\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	gnl\|CDD\|182284	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional.	0
NZ_CP027452.1\|WP_001230244.1\|181552_182725_-\|pentaheme-c-type-cytochrome-TorC	gnl\|CDD\|184992	PRK15032, PRK15032, pentaheme c-type cytochrome TorC.	0
NZ_CP027452.1\|WP_001151437.1\|174171_174768_+\|NAD(P)H:quinone-oxidoreductase	gnl\|CDD\|179647	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional.	8.51484e-133
NZ_CP027452.1\|WP_001028089.1\|171699_172194_+\|pyrimidine-utilization-flavin-reductase-protein-F	gnl\|CDD\|132654	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the flavin reductase family defined by pfam01613. Presumably, this protein recycles the flavin of the RutA luciferase-like oxidoreductase.	2.31162e-104

>NZ_CP027452.1|WP_106889353.1|172214_173543_+|pyrimidine-utilization-transport-protein-G
MAMFGFPHWQLKSTSTESGVVAPDERLPFAQTAVMGVQHAVAMFGATVLMPILMGLDPNLSILMSGIGTLLFFFITGGRVPSYLGSSAAFVGVVIAATGFNGQGINPNISIALGGIIACGLVYTVIGLVVMKIGTRWIERLMPPVVTGAVVMAIGLNLAPIAVKSVSASAFDSWMAVMTVLCIGLVAVFTRGMIQRLLILAGLIVACLLYGVMTNVLGLGKAVDFTLVSHAAWFGLPHFSTPAFNGQAMMLIAPVAVILVAENLGHLKAVAGMTGRNMDPYMGRAFVGDGLATMLSGSVGGSGVTTYAENIGVMAVTKVYSTLVFVAAAVIAMLLGFSPKFGALIHTIPAAVIGGASIVVFGLIAVAGARIWVQNRVDLSQNGNLIMVAVTLVLGAGDFALTLGGFTLGGIGTATFGAILLNALLSRRLVDVPPPEVVHQKP
>NZ_CP027452.1|WP_001028089.1|171699_172194_+|pyrimidine-utilization-flavin-reductase-protein-F
MNIVDQQTFRDAMSCMGAAVNIITTDGPAGRAGFTASAVCSVTDTPPTLLVCLNRGASVWPVFNENRTLCVNTLSAGQEPLSNLFGGKTPMEHRFAAARWQTGVTGCLQLEEALVSFDCRISQVVSVGTHDILFCAIEAIHRHATPYGLVWFDRSYHALMRPAC
>NZ_CP027452.1|WP_042104023.1|170288_171101_+|pyrimidine-utilization-protein-D
MKLSLSPPPYADAPVVVLISGLGGSGSYWLPQLAVLEQEYQVVCYDQRGTGNNPDTLAEDYSITQMAAELHQALVAAGIERYAVVGHALGALVGMQLALDYPASVTVLVSVNGWLRINAHTRRCFQVREQLLHSGGAQAWVEAQPLFLYPADWMAARAPRLEAEDALALAHFQGKNNLLRRLNALKRADFSRHTDRIRCPVQIICASDDLLVPSACSSELHAALPDSQKMVMRYGGHACNVTDPETFNALLLNGLASLLHHREAACKELL
>NZ_CP027452.1|WP_001126780.1|169894_170281_+|pyrimidine-utilization-protein-C
MPKSVIIPAGSSAPLAPFVPGTLADGVVYVSGTLAFDQHNNVLFADDPKAQTRHVLETIRKVIETAGGTMADVTFNSIFITDWKNYAAINEIYAEFFPGDKPARFCIQCGLVKPDALVEIATIAHIAK
>NZ_CP027452.1|WP_001815788.1|169190_169883_+|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB
MTTLTARPEAITFDPQQTALIVVDMQNAYATPGGYLDLAGFDVSTTRPVIANIQTAVTAARAAGMLIIWFQNGWDEQYVEAGGPGSPNFHKSNALKTMRKQPQLQGKLLAKGSWDYQLVDELVPQPGDIVLPKPRYSGFFNTPLDSILRSRGIRHLVFTGIATNVCVESTLRDGFFLEYFGVVLEDATHQAGPEFAQKAALFNIETFFGWVSDVETFCDALSPTSFARIA
>NZ_CP027452.1|WP_001317757.1|168099_169191_+|pyrimidine-utilization-protein-A
MKIGVFVPIGNNGWLISTHAPQYMPTFELNKAIVQKAEHYHFDFALSMIKLRGFGGKTEFWDHNLESFTLMAGLAAVTSRIQIYATAATLTLPPAIVARMAATIDSISGGRFGVNLVTGWQKPEYEQMGIWPGDDYFSRRYDYLTEYIQVLRDLWGSGKSDFKGDFFTMDDCRVSPQPSVPMKVICAGQSDAGMAFSARYADFNFCFGKGVNTPTAFAPTAARMKQAAEQTGRDVGSYVLFMVIADETDDAARAKWEHYKAGADEEALSWLTEQSQKDTRSGTDTNVRQMADPTSAVNINMGTLVGSYASVARMLDEVASVPGAEGVLLTFDDFLSGIENFGERIQPLMQCRAHLPALTQEVA
>NZ_CP027452.1|WP_000191701.1|167173_167812_-|HTH-type-transcriptional-regulator-RutR
MTQGAVKTTGKRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAFREDFAPLAAIKEYIRLKLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQHLIFMIWASTQHYADFAPQVEAVTGATLRDEVFFNQTVENVQRIIIEGIRPR
>NZ_CP027452.1|WP_001317758.1|163171_167134_+|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase
MGTTTMGVKLDDATRERIKSAATRIDRTPHWLIKQAIFSYLEQLENSDTLPELPALLSGAANESDEAPTPAEEPHQPFLDFAEQILPQSVSRAAITAAYRRPETEAVSMLLEQARLPQPVAEQAHKLAYQLADKLRNQKNASGRAGMVQGLLQEFSLSSQEGVALMCLAEALLRIPDKATRDALIRDKISNGNWQSHIGRSPSLFVNAATWGLLFTGKLVSTHNEASLSRSLNRIIGKSGEPLIRKGVDMAMRLMGEQFVTGETIAEALANARKLEEKGFRYSYDMLGEAALTAADAQAYMVSYQQAIHAIGKASNGRGIYEGPGISIKLSALHPRYSRAQYDRVMEELYPRLKSLTLLARQYDIGINIDAEEADRLEISLDLLEKLCFEPELAGWNGIGFVIQAYQKRCPLVIDYLIDLATRSRRRLMIRLVKGAYWDSEIKRAQMDGLEGYPVYTRKVYTDVSYLACAKKLLAVPNLIYPQFATHNAHTLAAIYQLAGQNYYPGQYEFQCLHGMGEPLYEQVTGKVADGKLNRPCRIYAPVGTHETLLAYLVRRLLENGANTSFVNRIADTSLPLDELVADPVTAVEKLAQQEGQTGLPHPKIPLPRDLYGDGRDNSAGLDLANEHRLASLSSALLNSALQKWQALPMLEQSVAAGEMSPVINPAEPKDIVGFVREATPREVEQALESAVNNAPIWFATPPAERAAILHRAAVLMESQMQQLIGILVREAGKTFSNAIAEVREAVDFLHYYAGQVRDDFANETHRPLGPVVCISPWNFPLAIFTGQIAAALAAGNSVLAKPAEQTPLIAAQGIAILLEAGVPPGVVQLLPGRGETVGAQLTGDERVRGVMFTGSTEVATLLQRNIASRLDAQGRPIPLIAETGGMNAMIVDSSALTEQVVVDVLASAFDSAGQRCSALRVLCLQDEIADHTLKMLRGAMAECRMGNPGRLTTDIGPVIDSEAKANIERHIQTMRSKGRPVFQAVRENSEDAREWQSGTFVAPTLIELDNFAELQKEVFGPVLHVVRYNRNQLPELIEQINASGYGLTLGVHTRIDETIAQVTGSAHVGNLYVNRNMVGAVVGVQPFGGEGLSGTGPKAGGPLYLYRLLANRPESALAVTLARQDAEYPVDAQLKAALIQPLNALREWAANRPELQALCTQYGELAQAGTQRLLPGPTGERNTWTLLPRERVLCIADDEQDALTQLAAVLAVGSQVLWPDDALHRQLVKALPSAVSERIQLAKAENITAQPFDAVIFHGDSDQLRALCEAVAARDGAIVSVQGFARGESNILLERLYIERSLSVNTAAAGGNASLMTIG
>NZ_CP027452.1|WP_000979523.1|162907_163117_-|hypothetical-protein
MMLQLCATVLNVTCVASLKMNEMLINEIDMTGIKKITQTFSLRQLTFLKGATAKNVRECNLMKNSVAEH
>NZ_CP027452.1|WP_001018496.1|161240_162749_-|sodium/proline-symporter-PutP
MAISTPMLVTFCVYIFGMILIGFIAWRSTKNFDDYILGGRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISESWIAIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFTGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFGMSYETALWAGAAATILYTFIGGFLAVSWTDTVQASLMIFALILTPVIVIISVGGFGDSLEVIKQKSIENVDMLKGLNFVAIISLMGWGLGYFGQPHILARFMAADSHHSIVHARRISMTWMILCLAGAVAVGFFGIAYFNEHPAVAGAVNQNAERVFIELAQILFNPWIAGILLSAILAAVMSTLSCQLLVCSSAITEDLYKAFLRKQASQKELVWVGRVMVLVVALVAIALAANPENRVLGLVSYAWAGFGAAFGPVVLFSVMWSRMTRNGALAGMIIGALTVIVWKQFGWLGLYEIIPGFIFGSIGIVVFSLLGKAPSAAMQKRFAEADAHYHSAPPSRLQES
>NZ_CP027452.1|WP_001151437.1|174171_174768_+|NAD(P)H:quinone-oxidoreductase
MAKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITSTWTTLAHHGMVIVPIGYAAQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG
>NZ_CP027452.1|WP_001143120.1|174788_175016_+|hypothetical-protein
MPTQEAKAHHVGEWASLRNTSPEIAEAIFEVAGYDEKMAEKIWEEGSDEVLVKAFAKTDKDSLFWGEQTIERKNV
>NZ_CP027452.1|WP_053290908.1|175053_176295_-|bifunctional-glucose-1-phosphatase/inositol-phosphatase
MNKTLIAATVAGIVLLASNAQAQTVPEGYQLQQVLMMSRHNLRAPLANNGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYMGHYMREWLAEQGMVKSGECPPPDTVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKMGTMDPTFNPVITDDSAAFSEQAVAAMEKELSKLQLTDSYQLLEKIVNYKDSPACKEKQQCSLVDGKNTFSAKYQQEPGVSGPLKVGNSLVDAFTLQYYEGFPMDQVAWGEIKSDQQWRVLSKLKNGYQDSLFTSPEVARNVAKPLVSYIDKALVTDRTSAPKITVLVGHDSNIASLLTALDFKPYQLHDQNERTPIGGKIVFQRWHDSKANRDLMKIEYVYQSAEQLRNADALTLQAPAQRVTLELSGCPIDANGFCPMDKFDSVLNEAVK
>NZ_CP027452.1|WP_000420644.1|176829_177750_+|curved-DNA-binding-protein
MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFSRQFQHGDGQSFNAEDFDDIFSSIFGQHARQSRQRPATRGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPVSPWEAALGTKVTVPTLKESILLTIPPGSQAGQRLRVKGKGLVSKKQTGDLYAVLKIVMPPKPDENTAALWQQLADAQSSFDPRKDWGKA
>NZ_CP027452.1|WP_000024560.1|177749_178055_+|chaperone-modulator-CbpM
MANVTVTFTITEFCLHTGISEEELNEIVGLGVVEPREIQETTWVFDDHAAIVVQRAVRLRHELALDWPGIAVALTLMDDIAHLKQENRLLRQRLSRFVAHP
>NZ_CP027452.1|WP_042106215.1|178410_179010_-|molecular-chaperone-TorD
MTTLTAQQIACVYAWLAQLFSRELDDEQLTQIASAQMAEWFSLLKSEPPLTAAVNELENRIATQTVRDDARLELAADFCGLFLMTDKQAALPYASAYKQDEQEIKRLLVEAGMETSGNFNEPADHLAIYLELLSHLHFSLGEGTVPARRIDNLRQKTLTALRQWLPEFAARCRQYDSFGFYAALSQLLLVLVECDYQKR
>NZ_CP027452.1|WP_042106216.1|179006_181553_-|trimethylamine-N-oxide-reductase-TorA
MNNNDLFQASRRRFLAQLGGLTVAGMLGPSLLTPRSATAAQAATEAVTSKEGILTGSHWGAIRATVKEGRFVAAKPFELDKYPSKMIAGLPDHVHNAARIRYPMVRVDWLRKRHLSDTSQRGDNRFVRVSWDEALDMFYEELERVQKTHGPSALLTASGWQSTGMFHNASGMLAKAIALHGNSVGTGGDYSTGAAQVILPRVVGSMEVYEQQTSWPLVLQNSKTIVLWGSDLLKNQQANWWCPDHDVYEYYEQLKAKVAAGEIEVISIDPVVTSTHEYLGGEHVKHIAVNPQTDVPLQLALAHTLYSENLYDKNFLANYCVGFEQFLPYLLGEKDGQPKDAAWAEKLTGINAETIRGLARQMAANRTQIIAGWCVQRMQHGEQWAWMIVVLAAMLGQIGLPGGGFGFGWHYNGAGTPGRKGVILSGFSGSTSIPPVHDNSDYKGYSSTIPIARFIDAILEPGKVINWNGKSVKLPPLKMCIFAGTNPFHRHQQINRIIEGWRKLETVIAIDNQWTSTCRFADIVLPATTQFERNDLDQYGNHSNRGIIAMKQVVPPQFEARNDFDIFRELCRRFNREEAFTEGLDEMGWLKRIWQEGVQQGKGRGVHLPAFDDFWNNKEYVEFDHPQMFVRHQAFREDPDLEPLGTPSGLIEIYSKTIADMNYDDCQGHPMWFEKIERSHGGPGSQKYPLHLQSVHPDFRLHSQLCESETLRQQYTVAGKEPVFINPQDASARGIRNGDVVRVFNARGQVLAGAVVSDRYAPGVARIHEGAWYDPDKGGEPGALCKYGNPNVLTIDIGTSQLAQATSAHTTLVEIEKYNGTVEQVTAFNGPVEMVAQCEYVPASQVKS
>NZ_CP027452.1|WP_001230244.1|181552_182725_-|pentaheme-c-type-cytochrome-TorC
MRKLWNALRRPSARWSVLALVAIGIVIGIALIVLPHVGIKVTSTTEFCVSCHSMQPVYEEYKQSVHFQNASGVRAECHDCHIPPDIPGMVKRKLEASNDIYQTFIAHSIDTPEKFEAKRAELAEREWARMKENNSATCRSCHNYDAMDHAKQHPEAARQMKVAAKDNQSCIDCHKGIAHQLPDMSSGFRKQFDELRASANDSGDTLYSIDIKPIYAAKGDKEASGSLLPASEVKVLKRDGDWLQIEITGWTESAGRQRVLTQFPGKRIFVASIRGDVQQQVKTLEKTTVADTNTEWSKLQATAWMKKGDMVNDIKPIWAYADSLYNGTCNQCHGAPEISHFDANGWIGTLNGMIGFTSLDKREERTLLKYLQMNASDTAGKAHGDKKEEK
>NZ_CP027452.1|WP_001120112.1|182854_183547_+|two-component-system-response-regulator-TorR
MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQPVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAADVC
>NZ_CP027452.1|WP_001264952.1|183519_184548_-|TMAO-reductase-system-periplasmic-protein-TorT
MRVLLFLLLSLFMLSAFSADNLLRWHDAQHYTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQKQVANLPVIELVNAIDAPHVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVMTPKNADREHIRRSLSPGGFRPVYFYQHTSAAKK

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Crispr_ID: NZ_CP027452_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP027452_2

675976-676088

Orphan

Consensus_repeat	Method
TTTTCTTACCTGATTCGGGTAAA	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP027452_2

>merge|NZ_CP027452|2|675976-676088|PILER-CR
TTACCTGATTCGGGTAAACGCCTTTACCTGATTTGGGTAAACTTTTCTTACCTGATTCAGGTAAATTTACCTCTTTCAGGTAAACTTTATTTTTCTTACCTGATTCGGGTAAT

>NZ_CP027452|2|1|675976-676088|PILER-CR
TTACCTGATTCGGGTAAACGCCT	TTACCTGATTTGGGTAAACTTTTC
TTACCTGATTCAGGTAAATTTAC	CTCTTTCAGGTAAACTTTATTTTTC
TTACCTGATTCGGGTAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP027452.1\|WP_106889377.1\|671899_672217_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371129
NZ_CP027452.1\|WP_000995453.1\|679035_679332_+\|host-nuclease-inhibitor-protein-Gam	unknown	unknown	gnl\|CDD\|368728
NZ_CP027452.1\|WP_000145915.1\|674511_674814_-\|protein-ren	unknown	unknown	unknown
NZ_CP027452.1\|WP_000149544.1\|680796_680979_+\|DUF1317-domain-containing-protein	unknown	unknown	gnl\|CDD\|284449
NZ_CP027452.1\|WP_023148105.1\|678669_678960_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236900
NZ_CP027452.1\|WP_032139864.1\|673912_674020_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027452.1\|WP_001309322.1\|670565_670667_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027452.1\|WP_001182893.1\|676524_677064_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368819
NZ_CP027452.1\|WP_106889382.1\|680119_680800_+\|YqaJ-viral-recombinase-family-protein	unknown	unknown	gnl\|CDD\|378216
NZ_CP027452.1\|WP_000548537.1\|680951_681143_+\|DUF1382-family-protein	unknown	unknown	gnl\|CDD\|369224
NZ_CP027452.1\|WP_106889380.1\|677133_677364_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|374243
NZ_CP027452.1\|WP_001070442.1\|674111_674444_-\|SMR-family-multidrug-efflux-protein-EmrE	unknown	unknown	gnl\|CDD\|137367
NZ_CP027452.1\|WP_000068668.1\|670765_671695_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027452.1\|WP_106889378.1\|672328_673855_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|238206
NZ_CP027452.1\|WP_000224919.1\|669943_670114_-\|NinE-family-protein	unknown	unknown	gnl\|CDD\|182029
NZ_CP027452.1\|WP_001443983.1\|681153_681435_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027452.1\|WP_001053033.1\|670113_670569_-\|DNA-base-flipping-protein-YbcN	unknown	unknown	gnl\|CDD\|182057
NZ_CP027452.1\|WP_000100847.1\|679337_680123_+\|phage-recombination-protein-Bet	unknown	unknown	gnl\|CDD\|273871
NZ_CP027452.1\|WP_000858975.1\|677468_678158_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225484
NZ_CP027452.1\|WP_106889379.1\|674810_675512_-\|Replication-protein-P	unknown	unknown	gnl\|CDD\|369163

Protein	Function_ID	Function_description	E-value
NZ_CP027452.1\|WP_106889377.1\|671899_672217_-\|hypothetical-protein	gnl\|CDD\|371129	pfam10548, P22_AR_C, P22AR C-terminal domain. This domain was identified by Iyer and colleagues. It is found associated with pfam10547.	1.33294e-10
NZ_CP027452.1\|WP_000995453.1\|679035_679332_+\|host-nuclease-inhibitor-protein-Gam	gnl\|CDD\|368728	pfam06064, Gam, Host-nuclease inhibitor protein Gam. The Gam protein inhibits RecBCD nuclease and is found in both bacteria and bacteriophage.	1.62072e-52
NZ_CP027452.1\|WP_106889380.1\|677133_677364_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|374243	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT. YdaS_antitoxin is a family of putative bacterial antitoxins, neutralising the toxin YdaT, family pfam06254.	5.96351e-21
NZ_CP027452.1\|WP_000149544.1\|680796_680979_+\|DUF1317-domain-containing-protein	gnl\|CDD\|284449	pfam07026, DUF1317, Protein of unknown function (DUF1317). This family consists of several hypothetical bacterial and phage proteins of around 60 residues in length. The function of this family is unknown.	4.0912e-34
NZ_CP027452.1\|WP_001182893.1\|676524_677064_-\|hypothetical-protein	gnl\|CDD\|368819	pfam06254, YdaT_toxin, Putative bacterial toxin ydaT. YdaT_toxin is a family of putative bacterial toxins that are neutralized by the putative antitoxin YdaS, UniProtKB:P76063, family pfam144549.	5.95277e-36
NZ_CP027452.1\|WP_000548537.1\|680951_681143_+\|DUF1382-family-protein	gnl\|CDD\|369224	pfam07131, DUF1382, Protein of unknown function (DUF1382). This family consists of several hypothetical Escherichia coli and bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown. Structural modelling suggests this domain may bind nucleic acids.	4.73563e-23
NZ_CP027452.1\|WP_023148105.1\|678669_678960_+\|hypothetical-protein	gnl\|CDD\|236900	PRK11354, kil, FtsZ inhibitor protein; Reviewed.	1.93326e-13
NZ_CP027452.1\|WP_106889382.1\|680119_680800_+\|YqaJ-viral-recombinase-family-protein	gnl\|CDD\|378216	pfam09588, YqaJ, YqaJ-like viral recombinase domain. This protein family is found in many different bacterial species but is of viral origin. The protein forms an oligomer and functions as a processive alkaline exonuclease that digests linear double-stranded DNA in a Mg(2+)-dependent reaction, It has a preference for 5'-phosphorylated DNA ends. It thus forms part of the two-component SynExo viral recombinase functional unit.	2.50339e-28
NZ_CP027452.1\|WP_106889378.1\|672328_673855_-\|recombinase-family-protein	gnl\|CDD\|238206	cd00338, Ser_Recombinase, Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are proteins with N-terminal DNA binding domains similar to IS607- and IS1535-transposases from Helicobacter and Mycobacterium.	1.27626e-25
NZ_CP027452.1\|WP_001070442.1\|674111_674444_-\|SMR-family-multidrug-efflux-protein-EmrE	gnl\|CDD\|137367	PRK09541, emrE, EmrE family multidrug efflux SMR transporter.	2.58749e-62
NZ_CP027452.1\|WP_001053033.1\|670113_670569_-\|DNA-base-flipping-protein-YbcN	gnl\|CDD\|182057	PRK09741, PRK09741, hypothetical protein; Provisional.	8.87333e-95
NZ_CP027452.1\|WP_000100847.1\|679337_680123_+\|phage-recombination-protein-Bet	gnl\|CDD\|273871	TIGR01913, Uncharacterized_protein_UU154, phage recombination protein Bet. This model represents the phage recombination protein Bet from a number of phage, including phage lambda. All members of this family are found in phage genomes or in putative prophage regions of bacterial genomes. [Mobile and extrachromosomal element functions, Prophage functions].	1.45393e-64
NZ_CP027452.1\|WP_000224919.1\|669943_670114_-\|NinE-family-protein	gnl\|CDD\|182029	PRK09689, PRK09689, prophage protein NinE; Provisional.	5.23624e-25
NZ_CP027452.1\|WP_000858975.1\|677468_678158_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225484	COG2932, COG2932, Predicted transcriptional regulator [Transcription].	1.28713e-28
NZ_CP027452.1\|WP_106889379.1\|674810_675512_-\|Replication-protein-P	gnl\|CDD\|369163	pfam06992, Phage_lambda_P, Replication protein P. This family consists of several Bacteriophage lambda replication protein P like proteins. The bacteriophage lambda P protein promoters replication of the phage chromosome by recruiting a key component of the cellular replication machinery to the viral origin. Specifically, P protein delivers one or more molecules of Escherichia coli DnaB helicase to a nucleoprotein structure formed by the lambda O initiator at the lambda replication origin.	2.05432e-83

>NZ_CP027452.1|WP_106889379.1|674810_675512_-|Replication-protein-P
MKNIAAQMINFDREQMRRIANNMPEQFDEKPQVQQVAQIINGVFSQLLATFPASLANRDQNELNEIRRQWVLAFRENGITTMEQVNAGMRVARRQNRPFLPSPGQFVAWCREEASVIAGLPNVSELVDMVYEYCRKRGLYPDAESYPWKSNAHYWLVTNLYQNMRANALTDAELRRKAADELVHMTARINRGEAIPEPVKQLPVMGGRPLNRAQALAKIAEIKAKFGLKGASV
>NZ_CP027452.1|WP_000145915.1|674511_674814_-|protein-ren
MTGKEAIIHYLGTHKSFCAQDVAAVTGATVTSINQAAAKMARAGILVVDGKVWRTVYYRFATREEREGKVSTNLIFKECRQSAAMKRVLRVYKRTSMGTQ
>NZ_CP027452.1|WP_001070442.1|674111_674444_-|SMR-family-multidrug-efflux-protein-EmrE
MNPYIYLGGAILAEVIGTTLMKFSEGFTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLSRSTPH
>NZ_CP027452.1|WP_032139864.1|673912_674020_-|hypothetical-protein
MYSFVLSRLWRKKIAIRLLLYIQDNVTLIVFLNKN
>NZ_CP027452.1|WP_106889378.1|672328_673855_-|recombinase-family-protein
MKKAIAYMRFSSPGQMSGDSLNRQRRLIAEWLKVNSDYYLDTITYEDLGLSAFKGKHAQSGAFSEFLDAIEHGYILPGTTLLVESLDRLSREKVGEAIERLKLILNHGIDVITLCDNTVYNIDSLNVPYSLIKAILIAQRANEESEIKSSRVKLSWKKKRQDALESGTIMTASCPRWLSLDDKRTAFVPDPDRVKTIELIFKLRMERRSLNAIAKYLNDHAVKNFSGKESAWGPSVIEKLLANKALIGICVPSYRARGKGISEIAGYYPRVISDDLFYAVQEIRLAPFGISNSSKNPMLINLLRTVMKCEACGNTMIVHAVSGSLHGYYVCPMRRLHRCDRPSIKRDLVDYNIINELLFNCSKIQPVENKKDANETLELKIIELQMKINNLIAALSVAPEVTAIAEKIRVLDKELRRASVSLKTLKSKAVSSLGDFHAIDLTSKNGRELCRTLAYKTFEKIIINTDNKTCDIYFMNGIVFKHYPLMKTISAQQAISTLKYMVDGEVYF
>NZ_CP027452.1|WP_106889377.1|671899_672217_-|hypothetical-protein
MDAGVLVLAVQQSPITKQFTDNELCTLAWLWRAGNVMLIAYQNVTHLLQDAEHGEAGHFSSIEQEYPQILNRARAILVRETAHVKLQPWQDDKWSRVLPYLRQIC
>NZ_CP027452.1|WP_000068668.1|670765_671695_-|hypothetical-protein
MAQQRTTSLRSIPLDLDVKQEAVINGIEMGVLDNGIPYLTQNGLANVCGVQRLRIKEITDEWAQSVENGIFKKGRMTFIGTYLLNEGFTDEKLYIPIIRNGVEYHAYPDVVCMAILEYYAFEAKQAESETAIRSYRELAKKGLKTFIYEALKYQPEDPWRHYHDRVSLLKDKGTIPDGYFIIFNEIAGMMVDLINAGLAINQHTVPDGSVGSCWARHWKAKGLATEFGERVDCEHYYPEDFLQASSNPQIINAYPDSALSEFRRWFKHEYLTTKFPPYILKKSNVLPGGTEDANRLIEAFKKSELENKP
>NZ_CP027452.1|WP_001309322.1|670565_670667_-|hypothetical-protein
MRTYNPNSLLPSQMQRCTCDFLHPAFDLCGGEA
>NZ_CP027452.1|WP_001053033.1|670113_670569_-|DNA-base-flipping-protein-YbcN
MNLPQDGIKLHRGNFTAIGRQIQPYLEEGKCFRMVLKPWREKRSLSQNALSHMWYSEISEYLINRGKTFATPAWVKDALKHTYLGYETKDLVDVVTGDITTIQSLRHTSDLDTGEMYVFLCKVEAWAVNIGCHLTIPQSCEFQLLRDKQEA
>NZ_CP027452.1|WP_000224919.1|669943_670114_-|NinE-family-protein
MATPLIRVMNGHIYRVSNRRKRKPEPKPSEIPTLLGYTASLVDKKWLRLAARRNHG
>NZ_CP027452.1|WP_001182893.1|676524_677064_-|hypothetical-protein
MQPLTYQQTSGFSPTAVINRSQTKQVPGHEKIRDAVRAWSAEDNQDVVAALIVNEYRAQGGGTIDFSDDVSRARQKLFRFLDNKFDSEKYRNNVRELTPAILAVLPLKYRGHLVEQDSFMARLAEMEKELSEAKQAVILNAPRHQKLKEISEGIVSMFRVDPDLAGPLMAMVTTMLGAI
>NZ_CP027452.1|WP_106889380.1|677133_677364_-|helix-turn-helix-domain-containing-protein
MNPAIKTAINIVGSQKKLGAACEVSQQAVYKWLHNKAKVSPEHVGSIVTATGGVVKAYQIRPDLLKLFPHTEKNAA
>NZ_CP027452.1|WP_000858975.1|677468_678158_+|helix-turn-helix-transcriptional-regulator
MKTTLSERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKANQTTKIVEIANALGVRAEWLSSGVGNMSDSTVQPIQSTVSHSKYFKIDVLDIEVSAGPGVINREFVEVLRSVEYSFDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDITVKSFDGDGIYAFLYDDTAHVKRLQMMKDKLLVISDNKSYSPWDPIEKDEMNRVFIFGKVIGSMPQTYRKHG
>NZ_CP027452.1|WP_023148105.1|678669_678960_+|hypothetical-protein
MTTGGHPPPEYAQKSLYVQQPSLRAGVFMVHQHYGTQTVNRGAVMPGMLVKHKDGTWTASANLRGRLYLHRGIERTYTRDLLVEVFLDGRGNGLNR
>NZ_CP027452.1|WP_000995453.1|679035_679332_+|host-nuclease-inhibitor-protein-Gam
MNAYYIQDRLEAQSWARYYQQIAREEKEAELADDIEKGLPQHLFESLCIDHLQRHGASKKAITRAFDDDVEFQERMAEHIRYMVETIAHHQVDIDSEV
>NZ_CP027452.1|WP_000100847.1|679337_680123_+|phage-recombination-protein-Bet
MSTALATLAGKLAERVGMDSVDPQELITTLRQTAFKGDASDAQFIALLIVANQYGLNPWTKEIYAFPDKQNGIVPVVGVDGWSRIINENQQFDGMDFEQDNESCTCRIYRKDRNHPICVTEWMDECRREPFKTREGREITGPWQSHPKRMLRHKAMIQCARLAFGFAGIYDKDEAERIVENTAYTAERQPERDITPVNDETMQEINTLLIALDKTWDDDLLPLCSQIFRRDIRASSELTQAEAVKALGFLKQKATEQKVAA
>NZ_CP027452.1|WP_106889382.1|680119_680800_+|YqaJ-viral-recombinase-family-protein
MIPDIILQRTGIDVRAVEQGDDAWHKLRLGVITASEVHNVIAKPRSGKKWPDMKMSYFHTLLAEVCTGVAPEVNAKALAWGKQYENDARTLFEFTSGVNITESPIIYRDESMRTACSPDGLCSDGNGLELKCPFTSRDFMKFRLGGFEAIKSAYMTQVQYSMWVTRKDAWYFANYDPRMKREGLHYVVIERNEKYMASFDEMVPEFIEKMDEALAEIGFVFGEQWR
>NZ_CP027452.1|WP_000149544.1|680796_680979_+|DUF1317-domain-containing-protein
MTHPHDNIRVGAITFVYSVTKRGWVFPGLSVIRNPLKAQRLAEKINNKREAVCTKHLLLS
>NZ_CP027452.1|WP_000548537.1|680951_681143_+|DUF1382-family-protein
MHKASPVELRTSIEMAHSLAQIGVRFVPIPVETDEEFHTLATSLSQKLEMMVAKAEADERDQV
>NZ_CP027452.1|WP_001443983.1|681153_681435_+|hypothetical-protein
MHFSGSGLHILCAYACRHGACSMTPQQENALRSIARQANSEIKKARQHFPDKNVDDICRSVLKKHRETVTLMGFTPTHLSLAIGMLNGVFKER

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Crispr_ID: NZ_CP027452_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP027452_3

3132313-3132768

Unclear

I-E

Consensus_repeat	Method
GAGTTCCCCACGTCAGCGGGGATAAACCG	PILER-CR
GAGTTCCCCACGTCAGCGGGGATAAACCG	CRISPRCasFinder
GAGTTCCCCNCGNCAGCGGGGATAAACCG	CRT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR

7 spacers

The CRISPR arrays of NZ_CP027452_3

>merge|NZ_CP027452|3|3132313-3132768|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
GAGTTCCCCACGTCAGCGGGGATAAACCGACGTAACAAAACAACAGCAAAATATTATCGACGAGTTCCCCACGTCAGCGGGGATAAACCGGCTCCGCCGGTTTGATCTCCGGTTTGCGCTGTGAGTTCCCCACGTCAGCGGGGATAAACCGTTGGTCACTCGTCAAAAGTCGAGACGGTCGAAGAGTTCCCCACGTCAGCGGGGATAAACCGAATGATTGATATAAATCTGTGTACGGTGTCCGGAGTTCCCCGCGCCAGCGGGGATAAACCGCTAGGATAAATTAAAAGACAAAATTGCAGCAAGAGTTCCCCGCGGCAGCGGGGATAAACCGGAGCGACCAGTATCAAGATCGACAGGTTTTGCGAGTTCCCCGCGCCAGCGGGGATAAACCGATCGATATGTACGTTAGCGAGGGGATCACGCAGAGTTCCCCGCACCAGCGGGGATAAACCA

>NZ_CP027452|3|2|3132313-3132524|PILER-CR
GAGTTCCCCACGTCAGCGGGGATAAACCG	ACGTAACAAAACAACAGCAAAATATTATCGAC
GAGTTCCCCACGTCAGCGGGGATAAACCG	GCTCCGCCGGTTTGATCTCCGGTTTGCGCTGT
GAGTTCCCCACGTCAGCGGGGATAAACCG	TTGGTCACTCGTCAAAAGTCGAGACGGTCGAA
GAGTTCCCCACGTCAGCGGGGATAAACCGAATGATTGATATAAATCTGTGTACGGTGTCCGGAGTTCCCCGCGCCAGCGGGGATAAACCG	CTAGGATAAATTAAAAGACAAAATTGCAGCAA
GAGTTCCCCGCGGCAGCGGGGATAAACCG	GAGCGACCAGTATCAAGATCGACAGGTTTTGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ATCGATATGTACGTTAGCGAGGGGATCACGCA


>NZ_CP027452|3|2|3132313-3132768|CRISPRCasFinder
GAGTTCCCCACGTCAGCGGGGATAAACCG	ACGTAACAAAACAACAGCAAAATATTATCGAC
GAGTTCCCCACGTCAGCGGGGATAAACCG	GCTCCGCCGGTTTGATCTCCGGTTTGCGCTGT
GAGTTCCCCACGTCAGCGGGGATAAACCG	TTGGTCACTCGTCAAAAGTCGAGACGGTCGAA
GAGTTCCCCACGTCAGCGGGGATAAACCG	AATGATTGATATAAATCTGTGTACGGTGTCCG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CTAGGATAAATTAAAAGACAAAATTGCAGCAA
GAGTTCCCCGCGGCAGCGGGGATAAACCG	GAGCGACCAGTATCAAGATCGACAGGTTTTGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ATCGATATGTACGTTAGCGAGGGGATCACGCA
GAGTTCCCCGCACCAGCGGGGATAAACCA

>NZ_CP027452|3|1|3132313-3132768|CRT
GAGTTCCCCACGTCAGCGGGGATAAACCG	ACGTAACAAAACAACAGCAAAATATTATCGAC
GAGTTCCCCACGTCAGCGGGGATAAACCG	GCTCCGCCGGTTTGATCTCCGGTTTGCGCTGT
GAGTTCCCCACGTCAGCGGGGATAAACCG	TTGGTCACTCGTCAAAAGTCGAGACGGTCGAA
GAGTTCCCCACGTCAGCGGGGATAAACCG	AATGATTGATATAAATCTGTGTACGGTGTCCG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CTAGGATAAATTAAAAGACAAAATTGCAGCAA
GAGTTCCCCGCGGCAGCGGGGATAAACCG	GAGCGACCAGTATCAAGATCGACAGGTTTTGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ATCGATATGTACGTTAGCGAGGGGATCACGCA
GAGTTCCCCGCACCAGCGGGGATAAACCA

>NZ_CP027452|3|3|3132557-3132768|PILER-CR
	ACGTAACAAAACAACAGCAAAATATTATCGAC
GAGTTCCCCACGTCAGCGGGGATAAACCG	GCTCCGCCGGTTTGATCTCCGGTTTGCGCTGT
GAGTTCCCCACGTCAGCGGGGATAAACCG	TTGGTCACTCGTCAAAAGTCGAGACGGTCGAA
GAGTTCCCCACGTCAGCGGGGATAAACCGAATGATTGATATAAATCTGTGTACGGTGTCCGGAGTTCCCCGCGCCAGCGGGGATAAACCG	CTAGGATAAATTAAAAGACAAAATTGCAGCAA
GAGTTCCCCGCGGCAGCGGGGATAAACCG	GAGCGACCAGTATCAAGATCGACAGGTTTTGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ATCGATATGTACGTTAGCGAGGGGATCACGCA
GAGTTCCCCGCACCAGCGGGGATAAACCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP027452.1\|WP_000021322.1\|3136506_3137292_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187605
NZ_CP027452.1\|WP_001696088.1\|3138909_3140247_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NZ_CP027452.1\|WP_000059315.1\|3137361_3138816_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NZ_CP027452.1\|WP_000039745.1\|3133405_3134884_-\|sugar-kinase	unknown	unknown	gnl\|CDD\|212662
NZ_CP027452.1\|WP_000210878.1\|3127051_3128689_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP027452.1\|WP_001164575.1\|3134910_3136188_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
NZ_CP027452.1\|WP_001318006.1\|3140224_3141004_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997
NZ_CP027452.1\|WP_106889478.1\|3141000_3141861_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936
NZ_CP027452.1\|WP_000807756.1\|3114371_3114821_+\|flavodoxin	unknown	unknown	gnl\|CDD\|181230
NZ_CP027452.1\|WP_000046790.1\|3122353_3123655_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NZ_CP027452.1\|WP_000109536.1\|3142599_3142860_-\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|225289
NZ_CP027452.1\|WP_000097082.1\|3115255_3116608_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|273326
NZ_CP027452.1\|WP_001071634.1\|3126032_3126824_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP027452.1\|WP_106889477.1\|3117970_3119311_+\|glucarate-dehydratase	unknown	unknown	gnl\|CDD\|211799
NZ_CP027452.1\|WP_001318004.1\|3142850_3144122_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182194
NZ_CP027452.1\|WP_000226815.1\|3123702_3125937_+\|GTP-pyrophosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_CP027452.1\|WP_000036723.1\|3128775_3130074_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP027452.1\|WP_001199973.1\|3131301_3131973_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP027452.1\|WP_000211791.1\|3116609_3117950_+\|glucarate-dehydratase	unknown	unknown	gnl\|CDD\|211799
NZ_CP027452.1\|WP_001130278.1\|3142007_3142583_-\|glycerol-3-phosphate-responsive-antiterminator	unknown	unknown	gnl\|CDD\|224865

Protein	Function_ID	Function_description	E-value
NZ_CP027452.1\|WP_000021322.1\|3136506_3137292_+\|SDR-family-oxidoreductase	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.9939e-139
NZ_CP027452.1\|WP_001696088.1\|3138909_3140247_+\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.78259e-51
NZ_CP027452.1\|WP_000059315.1\|3137361_3138816_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	1.16286e-81
NZ_CP027452.1\|WP_000039745.1\|3133405_3134884_-\|sugar-kinase	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	2.96639e-109
NZ_CP027452.1\|WP_000210878.1\|3127051_3128689_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP027452.1\|WP_001164575.1\|3134910_3136188_-\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	7.00463e-29
NZ_CP027452.1\|WP_001318006.1\|3140224_3141004_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	7.49488e-64
NZ_CP027452.1\|WP_106889478.1\|3141000_3141861_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	2.84707e-87
NZ_CP027452.1\|WP_000807756.1\|3114371_3114821_+\|flavodoxin	gnl\|CDD\|181230	PRK08105, PRK08105, flavodoxin; Provisional.	2.03724e-105
NZ_CP027452.1\|WP_000046790.1\|3122353_3123655_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NZ_CP027452.1\|WP_000109536.1\|3142599_3142860_-\|ferredoxin-family-protein	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	4.39108e-42
NZ_CP027452.1\|WP_000097082.1\|3115255_3116608_+\|MFS-transporter	gnl\|CDD\|273326	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	6.41821e-161
NZ_CP027452.1\|WP_001071634.1\|3126032_3126824_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	6.42418e-159
NZ_CP027452.1\|WP_106889477.1\|3117970_3119311_+\|glucarate-dehydratase	gnl\|CDD\|211799	TIGR03247, glucar-dehydr, glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (GenProp0716). The E. coli enzyme has been well-characterized.	0
NZ_CP027452.1\|WP_001318004.1\|3142850_3144122_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|182194	PRK10015, PRK10015, oxidoreductase; Provisional.	2.50386e-125
NZ_CP027452.1\|WP_000226815.1\|3123702_3125937_+\|GTP-pyrophosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_CP027452.1\|WP_000036723.1\|3128775_3130074_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP027452.1\|WP_001199973.1\|3131301_3131973_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.98248e-155
NZ_CP027452.1\|WP_000211791.1\|3116609_3117950_+\|glucarate-dehydratase	gnl\|CDD\|211799	TIGR03247, glucar-dehydr, glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (GenProp0716). The E. coli enzyme has been well-characterized.	0
NZ_CP027452.1\|WP_001130278.1\|3142007_3142583_-\|glycerol-3-phosphate-responsive-antiterminator	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	1.96043e-88

>NZ_CP027452.1|WP_001199973.1|3131301_3131973_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP027452.1|WP_000036723.1|3128775_3130074_+|phosphopyruvate-hydratase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP027452.1|WP_000210878.1|3127051_3128689_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>NZ_CP027452.1|WP_001071634.1|3126032_3126824_+|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADGSAGNSREVLARWEQIKTEERAQKAQHSALDDIPSSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQVVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>NZ_CP027452.1|WP_000226815.1|3123702_3125937_+|GTP-pyrophosphokinase
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS
>NZ_CP027452.1|WP_000046790.1|3122353_3123655_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKALFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAIRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK
>NZ_CP027452.1|WP_106889477.1|3117970_3119311_+|glucarate-dehydratase
MSSQFTTPVVTEMQVIPVAGHDSMLMNLSGALVPFFTRNIVIIKDNSGHTGVGEIPGGEKIRKTLEDAIPLVVGKTLGEYKNVLTLVRNTFADRDAGGRGLQTFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGDGQQRSEVEMLGYLFFVGNRKATPLPYQSQPDDKCDWYRLRHEEAMTPDAVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAQRFPQARITLDPNGAWSLNEAIKIGKYLKGSLAYAEDPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWRQMGHTLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGLTWGSHSNNHFDISLAMFTHVAAAAPGKITAIDTHWIWQEGNQRLTKEPLEIKGGLVQVPEKPGLGVEIDMDQVMKAHELYQKHGLGARDDAMGMQYLIPGWTFDNKRPCMVR
>NZ_CP027452.1|WP_000211791.1|3116609_3117950_+|glucarate-dehydratase
MTTQSSPVITDMKVIPVAGHDSMLLNIGGAHNAYFTRNIVVLTDNAGHTGIGEAPGGEVIYQTLVKAIPMVLGQEVARLNKVVQQVHKGNQAADFDTFGKGAWTFELRVNAVAALEAALLDLLGQALNVPVCELLGPGKQRDAITVLGYLFYIGDRTKTDLPYLENTSGNHEWYQLRHQKAMNSEAVVRLAEASQDRYGFKDFKLKGGVLPGEQEIDTVRALKKRFPDARITVDPNGAWLLDEAISLCKGLNDVLTYAEDPCGAEQGFSGREVMAEFRRATGLPVATNMIATNWREMGHAVMLNAVDIPLADPHFWTLSGAVRVAQLCDDWGLTWGCHSNNHFDISLAMFTHVGAAAPGNPTAIDTHWIWQEGDCRLTKNPLEIKNGKIAVPDAPGLGVELDWEQVQKAHEAYKRLPGGARNDAGPMQYLIPGWTFDRKRPVFGRH
>NZ_CP027452.1|WP_000097082.1|3115255_3116608_+|MFS-transporter
MSSLSQAASSVEKRTNARYWIVVMLFIVTSFNYGDRATLSIAGSEMAKDIGLDPVGMGYVFSAFSWAYVIGQIPGGWLLDRFGSKRVYFWSIFIWSMFTLLQGFVDIFSGFGIIVALFTLRFLVGLAEAPSFPGNSRIVAAWFPAQERGTAVSIFNSAQYFATVIFAPIMGWLTHEVGWSHVFFFMGGLGIVISFIWLKVIHEPNQHPGVNQKELEYIAAGGALINMDQQNTKVKVPFSVKWGQIKQLLGSRMMIGVYIGQYCINALTYFFITWFPVYLVQARGMSILKAGFVASVPAVCGFIGGVLGGIISDWLMRRTGSLNIARKTPIVMGMLLSMVMVFCNYVNVEWMIIGFMALAFFGKGIGALGWAVMADTAPKEISGLSGGLFNMFGNISGIVTPIAIGYIVGTTGSFNGALIYVGVHALIAVLSYLVLVGDIKRIELKPVAGQ
>NZ_CP027452.1|WP_000807756.1|3114371_3114821_+|flavodoxin
MAEIGIFVGTMYGNSLLVAEEAEAILTAQGHKATVFEDPELSDWLPYQDKYVLVVTSTTGQGDLPDSIVPLFQGIKDTLGFQPNLRYGVIALGDSSYVNFCNGGKQFDALLQEQSAQRVGEMLLIDASENPEPETESNPWVEHWGTLLS
>NZ_CP027452.1|WP_000039745.1|3133405_3134884_-|sugar-kinase
MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCFASHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKTWAWSEDTAVMEKFNIPRQMLFDVQMPGTVLGHITRQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKALPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDAKAQDLSPEDLLNKKASCVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEMNHFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDKMVRVKDIFMPVESNAKRYDAMNKGIFKDLTKHTDVILKKSYEVMHGELGNADSIQSWSNA
>NZ_CP027452.1|WP_001164575.1|3134910_3136188_-|MFS-transporter
MQHNSYRRWITLAIISFSGGVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQVAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSASLKTVIIIYSVVYILLGILCWFFVSDNNNLRSTNNEEKQSFQLSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSVLGLLALTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEARTPSYIMGTTVGICSVIGFLPDVFVYPIIGYWQDTLPAAEAYRNMWLMGMAALAMVIIFTFLLFQKIRTADSAPAMASSK
>NZ_CP027452.1|WP_000021322.1|3136506_3137292_+|SDR-family-oxidoreductase
MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDNGETKEMIEKQGVEVDFMQVDITAEGAPQKIIAACCERFGTVDILVNNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLASQASNYVNGHLLVVDGGYLVR
>NZ_CP027452.1|WP_000059315.1|3137361_3138816_+|FAD-binding-oxidoreductase
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYVLEDMKTGFNILREIMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKATGEGIAEIVARYPQCQRVDSKLIETWFNHLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNGIMNTGTIYPIEK
>NZ_CP027452.1|WP_001696088.1|3138909_3140247_+|MFS-transporter
MNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFIGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGVLLGAFSVVWTVGYVLASIAGHHFISESPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVATATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLAAVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV
>NZ_CP027452.1|WP_001318006.1|3140224_3141004_+|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MNILLAFKAEPDAGMLAEKEWQAAAQGNSGPDVSLLRSLLGADEQAAAALLLAQRKNGTSMSLTALSMGDERALHWLRYLMALGFEEAVVLETAADLRFASEFVARHIAEWQRQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDAPFITLEQRTEHGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAELPAMQCLQLARAEQRRGATLIDGQTVAEKAQKLWQNYLRQRMQP
>NZ_CP027452.1|WP_106889478.1|3141000_3141861_+|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNITIVTINQENAAIASWLAAQDFSGCILAHWQIEPQPVVAEQVLDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSMRKSHWGNALTATLQTEKRPLCLSLARQAGALKNATLPSGMQQLNIVPGAPPDWLISVENLKNVTRDPLAEARRVLVVGQGGEADNQEIAMLVEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAGVRNSKFVVAINHDASAAVFSQADVGVVDDWKAVLEALVTTIHADCQ
>NZ_CP027452.1|WP_001130278.1|3142007_3142583_-|glycerol-3-phosphate-responsive-antiterminator
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISQIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>NZ_CP027452.1|WP_000109536.1|3142599_3142860_-|ferredoxin-family-protein
MSVARNLWRVADAPHIVPADSVERQTVQRLINACPAGLFSLTPEGDLRVDYRGCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG
>NZ_CP027452.1|WP_001318004.1|3142850_3144122_-|FAD-dependent-oxidoreductase
MEDDCDIIIIGAGIAGTACALRCARAGLSVLLVERAEIPGSKNLSGGRLYTHALAELLPQFHLTAPLERRITHESLSLLTPDGATTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVLAERHGLVTRPAGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSGGICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQSRVPASELLARFKTHPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLLGDALRSCVNTGISVRGMDMALTGTQAAAQTLISACQHREPQNLFALYHHNVERSLLWDVLQRYQHVPALLQRPGWYRAWPALMQDISRDLWDQGDKPVPPLRQLFWRHLRRHGLWHLAGDVIRSLRCL

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Crispr_ID: NZ_CP027452_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP027452_4

3158469-3159534

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

17 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP027452_4

>merge|NZ_CP027452|4|3158469-3159534|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGCATTGAAAACATTGCCTTTATTTTATTTTTTGGTGTTCCCCGCGCCAGCGGGGATAAACCGGCAGGCACGGGCAATATCAGACTCGGTCAAAGGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTCTGCATACCCCTGTTTTTGCTCTTAGCCAGTGTTCCCCGCGCCAGCGGGGATAAACCGTCGGTAAACGACTGGGTGCATAAATACAAGGGGTGTTCCCCGCGCCAGCGGGGATAAACCGACAATATCCCGGACCGGGCGCTGATTTAGTCAGTGTTCCCCGCGCCAGCGGGGATAAACCGACACCCCGCTATCTGCGCGGCTTTACGAGATAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGATCGGTGAAGAGGTCCGCGAAATACTCACTGTGTTCCCCGCGCCAGCGGGGATAAACCGGGGCCGCCGCGAATTTACACACGATTCAATACGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGGCGACTGGGGCGGGTTTGTTAATCTCATGGTGTTCCCCGCGCCAGCGGGGATAAACCGCACTGCCCGCAGTGTCAGCCGTACAGGCGATCGTGTTCCCCGCGCCAGCGGGGATAAACCGGACTATCGCGGACTGCTGAAATCAACCGGCGAGTGTTCCCCGCGCCAGCGGGGATAAACCGTTAACGCTCTATAAACCGTCCGTTTAATACTCGTGTTCCCCGCGCCAGCGGGGATAAACCGAAATTAAGAACGGCGTAAACGACGGCAGCATGGTGTTCCCCGCGCCAGCGGGGATAAACCGGTGATGATTCAGAGCAGACATTAGCCCGCGCTGTGTTCCCCGCGCCAGCGGGGATAAACCGAGTTGAGCGTCTACCAGTTGATTCGGGATATTGTGTTCCCCGCGCCAGCGGGGATAAACCGGCAAACAGCTAACCACCGCCGGGGCGGTTTCCGTGTTCCCCGCGCCAGCGGGGATAAACCGGGTAAAAACACGGTCTGAACCGACATTCATGTGTGTTCCCCGCGTCAGCGGGGATAAACCG

>NZ_CP027452|4|4|3158469-3159534|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATTGAAAACATTGCCTTTATTTTATTTTTTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAGGCACGGGCAATATCAGACTCGGTCAAAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTCTGCATACCCCTGTTTTTGCTCTTAGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGGTAAACGACTGGGTGCATAAATACAAGGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACAATATCCCGGACCGGGCGCTGATTTAGTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACACCCCGCTATCTGCGCGGCTTTACGAGATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGATCGGTGAAGAGGTCCGCGAAATACTCACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGCCGCCGCGAATTTACACACGATTCAATAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGGCGACTGGGGCGGGTTTGTTAATCTCATG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACTGCCCGCAGTGTCAGCCGTACAGGCGATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACTATCGCGGACTGCTGAAATCAACCGGCGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTAACGCTCTATAAACCGTCCGTTTAATACTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAATTAAGAACGGCGTAAACGACGGCAGCATG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGATGATTCAGAGCAGACATTAGCCCGCGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGTTGAGCGTCTACCAGTTGATTCGGGATATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAAACAGCTAACCACCGCCGGGGCGGTTTCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGTAAAAACACGGTCTGAACCGACATTCATGT
GTGTTCCCCGCGTCAGCGGGGATAAACCG

>NZ_CP027452|4|3|3158469-3159534|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATTGAAAACATTGCCTTTATTTTATTTTTTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAGGCACGGGCAATATCAGACTCGGTCAAAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTCTGCATACCCCTGTTTTTGCTCTTAGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGGTAAACGACTGGGTGCATAAATACAAGGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACAATATCCCGGACCGGGCGCTGATTTAGTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACACCCCGCTATCTGCGCGGCTTTACGAGATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGATCGGTGAAGAGGTCCGCGAAATACTCACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGCCGCCGCGAATTTACACACGATTCAATAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGGCGACTGGGGCGGGTTTGTTAATCTCATG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACTGCCCGCAGTGTCAGCCGTACAGGCGATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACTATCGCGGACTGCTGAAATCAACCGGCGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTAACGCTCTATAAACCGTCCGTTTAATACTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAATTAAGAACGGCGTAAACGACGGCAGCATG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGATGATTCAGAGCAGACATTAGCCCGCGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGTTGAGCGTCTACCAGTTGATTCGGGATATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAAACAGCTAACCACCGCCGGGGCGGTTTCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGTAAAAACACGGTCTGAACCGACATTCATGT
GTGTTCCCCGCGTCAGCGGGGATAAACCG

>NZ_CP027452|4|2|3158469-3159534|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATTGAAAACATTGCCTTTATTTTATTTTTTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAGGCACGGGCAATATCAGACTCGGTCAAAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTCTGCATACCCCTGTTTTTGCTCTTAGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGGTAAACGACTGGGTGCATAAATACAAGGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACAATATCCCGGACCGGGCGCTGATTTAGTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACACCCCGCTATCTGCGCGGCTTTACGAGATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGATCGGTGAAGAGGTCCGCGAAATACTCACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGCCGCCGCGAATTTACACACGATTCAATAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGGCGACTGGGGCGGGTTTGTTAATCTCATG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACTGCCCGCAGTGTCAGCCGTACAGGCGATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACTATCGCGGACTGCTGAAATCAACCGGCGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTAACGCTCTATAAACCGTCCGTTTAATACTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAATTAAGAACGGCGTAAACGACGGCAGCATG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGATGATTCAGAGCAGACATTAGCCCGCGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGTTGAGCGTCTACCAGTTGATTCGGGATATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAAACAGCTAACCACCGCCGGGGCGGTTTCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGTAAAAACACGGTCTGAACCGACATTCATGT
GTGTTCCCCGCGTCAGCGGGGATAAACCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP027452.1\|WP_001696086.1\|3149852_3152510_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP027452.1\|WP_001173653.1\|3163241_3163847_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP027452.1\|WP_000281438.1\|3156511_3157162_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_CP027452.1\|WP_000206444.1\|3154717_3155773_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP027452.1\|WP_000372392.1\|3160904_3161813_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP027452.1\|WP_000144858.1\|3157158_3158082_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP027452.1\|WP_000063170.1\|3158078_3158372_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP027452.1\|WP_001246104.1\|3163896_3164220_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP027452.1\|WP_001084113.1\|3152607_3154170_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP027452.1\|WP_001090371.1\|3161814_3163242_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP027452.1\|WP_001219237.1\|3165453_3165933_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP027452.1\|WP_000029335.1\|3154166_3154703_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP027452.1\|WP_000956458.1\|3149462_3149615_+\|type-I-toxin-antitoxin-system-Hok-family-toxin	unknown	unknown	gnl\|CDD\|366840
NZ_CP027452.1\|WP_000246133.1\|3164743_3165454_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP027452.1\|WP_000490430.1\|3159615_3160653_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP027452.1\|WP_001295182.1\|3166959_3167721_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP027452.1\|WP_000085058.1\|3155783_3156530_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP027452.1\|WP_052920081.1\|3146679_3148392_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP027452.1\|WP_000517479.1\|3164413_3164725_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP027452.1\|WP_000568955.1\|3165929_3166979_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884

Protein	Function_ID	Function_description	E-value
NZ_CP027452.1\|WP_001696086.1\|3149852_3152510_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	5.27198e-180
NZ_CP027452.1\|WP_001173653.1\|3163241_3163847_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	1.12214e-148
NZ_CP027452.1\|WP_000281438.1\|3156511_3157162_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	3.43159e-91
NZ_CP027452.1\|WP_000206444.1\|3154717_3155773_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	3.45361e-154
NZ_CP027452.1\|WP_000372392.1\|3160904_3161813_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP027452.1\|WP_000144858.1\|3157158_3158082_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.11358e-157
NZ_CP027452.1\|WP_000063170.1\|3158078_3158372_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	3.0872e-65
NZ_CP027452.1\|WP_001246104.1\|3163896_3164220_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.22003e-52
NZ_CP027452.1\|WP_001084113.1\|3152607_3154170_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP027452.1\|WP_001090371.1\|3161814_3163242_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP027452.1\|WP_001219237.1\|3165453_3165933_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	5.30213e-104
NZ_CP027452.1\|WP_000029335.1\|3154166_3154703_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	4.62446e-29
NZ_CP027452.1\|WP_000956458.1\|3149462_3149615_+\|type-I-toxin-antitoxin-system-Hok-family-toxin	gnl\|CDD\|366840	pfam01848, HOK_GEF, Hok/gef family.	8.32243e-12
NZ_CP027452.1\|WP_000246133.1\|3164743_3165454_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	3.47016e-121
NZ_CP027452.1\|WP_000490430.1\|3159615_3160653_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP027452.1\|WP_001295182.1\|3166959_3167721_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.92279e-150
NZ_CP027452.1\|WP_000085058.1\|3155783_3156530_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	7.00414e-48
NZ_CP027452.1\|WP_052920081.1\|3146679_3148392_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP027452.1\|WP_000517479.1\|3164413_3164725_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	2.23098e-61
NZ_CP027452.1\|WP_000568955.1\|3165929_3166979_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0

>NZ_CP027452.1|WP_000063170.1|3158078_3158372_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAIWLLEVRAGVYVGDTSKRIREMIWQQISQLAGCGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVDNQ
>NZ_CP027452.1|WP_000144858.1|3157158_3158082_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLSPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLAATVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALTEDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRQTYALLAKQYGVKWNGRKYDPKDWEKGDVVNRCISAATSCLYGISEAAVLAAGYAPAIGFIHSGKPLSFVYDIADIIKFDSVVPKAFEIAARQPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPETLGDSGHRGRGG
>NZ_CP027452.1|WP_000281438.1|3156511_3157162_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTGQLSPAQLLHLVDRGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQERPAESDIFTIECRPFAPELRTGQSLCFNLRANPTICKAGKRHDLLMEAKRQVRGQVEGSDVWLHQQQAALDWLAAQGERSGFTLLDTSVDAYRQQQLRRENSRQLIQFSSVDYTGMLTVTDPGLFLQRLSQGYGKSRAFGCGLMLIKPGAEA
>NZ_CP027452.1|WP_000085058.1|3155783_3156530_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLIFQLHGPMASWGVDAPGEVRHTHELPSRSALLGLLAAGVGIRRDDTERLNAFNRHYSLVVCASRNPRWARDYHTVQMPKEVRKARYFSRREELSAPDLLSAIISRRDYYTDAWWMVAVATTPDAPYSLEQLQDGLRHPVFPLYLGRKSHPLALPLAPLLLEGNASDVLRNAYQQYQDSFRELKVSLPKLQDECWWEGEHDGLVASKILRRRDVPLNRQQWLFGERTINQGPWLSKEEPCTSQE
>NZ_CP027452.1|WP_000206444.1|3154717_3155773_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRVSSQSLKRAWRTSALFEQALAGHIGIRSGRIAREAATILIEKGIEEKKAIEWAAKIADYLGKAKNDKKPKDPLTNAETEQLVHISPAEFDAVKALAHQLAEEKRAPKEEDLALLRKDRMAVDIAMFGRMLANKPEFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASEDAGAGHLGETGFGSALFYTYICIDKDLLVENLGGDEALANQTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTEQPRSLAAAFYEPINGTLQLDVAVQRITTLRENMNTVYEQKTECASFDVMNKQGSMKDVLDFICA
>NZ_CP027452.1|WP_000029335.1|3154166_3154703_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVKEEHKATLRKWHEELQEKRGNRASLRRSTTVNDVCLSEGFRSLLMQTHTLWKIESQEWRFTALALVAAVAANVKAIDERQPFAAQLAAVMSEGRFTRLSAVKTPDELLRQLRRAVKLLNGSVNLISLADDIFRWCQESDDLLNHHRRQQRPTEFIRIRWALEYYQAGDADNEQN
>NZ_CP027452.1|WP_001084113.1|3152607_3154170_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNSFSLLTTPWLPVRFKDGTTGKLAPVHLADENVVDIAAPRADLQGAAWQFLLGLLQTSFAPKDHRRWDDIWEDGLEAEKLREALLPLEHAFQFGPDSPSFMQDFEALTGDKVPVASLLPEIPGVQTTKFNKDHFIKRGVTEHLCPQCSALALFSLQLNAPSGGKGYRTGLRGGGPMTTLIELQEYQGNQQTPLWRKMWLNVMPQDEADLPLPKKFDGLVFPWLGPTRTSELAGAVVTDDQVNKLQAYWGMPRRIRIDFNTTTVGNCDICGEQNDALLSLMTTKNYGANYAMWQHPLTPYRIPLKEGGEFYSVKPQPGGLIWRDWLGLIETGKSENNTELPALVVKLFNASSLKQAKVGLWGFGYDFDNMKARCWYEHHFPLLLNKKEGQIPKLRLAAQTASRILSLLRSALKEAWFSDPKGVRGDFSFVDIDFWNKTQHRFLRLVRQIEEGQDADELLGKWQKEIWLFARQDFDERVFTNPYEPVDLKRVMTARKKYFTTSAEKQSAKAAREKKQEAAE
>NZ_CP027452.1|WP_001696086.1|3149852_3152510_+|CRISPR-associated-helicase/endonuclease-Cas3
MTFFYFWGKTRRGEKDGGEDYHLLCWHSLDVAAMGYLMVKSNCFGLAGYFRQLGFADTELAAQFFAWLLCWHDIGKFARSFQQLYLHPQLKVPEGARKNYEKISHSTLGYWLWNHYLSECQELLPSSSLSPRKLKRVMEMWMPMTTGHHGRPPERMDELDNFLPEDKGAARDFLLAIKVLFPLIEIPTFWDDDEGVELIKQLSWYISATVVLADWTGSSTRYFPRVAQAMDIEDYWQKTLVQAQNALTVFPPKAESAPFTGINTLFPFIENPTPLQQKVLDLDISQPGPQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLFFGLPTMATANAMYDRLVKTWLAFYSPESRPSLVLAHSARTLMDRFNESLWSGDLVGSEEPDEQTFSQGCAAWFADSNKKALLAEIGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAYMSCILEGLIERQARGGNSVILLSATLSQQQRDKLVAAFARGIEGQQEAPLLEKDDYPWLTHVTKSDVHSHRVATRKDVERSVSVGWLHSEQECIARIESAVSQGKCIAWIRNSVDDAIQVHRQLLARGVIPASSLSLFHSRFAFSDRQRIETETLARFGKEDCSQRAGKVLICTQVLEQSVDCDLDEMISDLAPVDLLIQRAGRLQRHIRDINGLLKRDGKDERSPPELLILAPVWDDSPGDEWFGSAMRNSAYVYPDHGRIWLTQRVLREQGAIQMPHAARLLIESVYGEDVAMPEGFARSEQEQVGKYYCDRAMAKKFVLNFKPGYAANINDYLPEKLSTRLAEESVSLWLATCIDGVVKPYATGAHAWEMSVVRVRRSWWKKHRDEFSLLEGDAFRQWCIEQRQDPEMANVILVTDDESCGYSAMEGLTGKVG
>NZ_CP027452.1|WP_000956458.1|3149462_3149615_+|type-I-toxin-antitoxin-system-Hok-family-toxin
MLTKYALVAIIVLCCTVLGFTLMVGDSLCELSIRERGMEFKAVLAYESKK
>NZ_CP027452.1|WP_052920081.1|3146679_3148392_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLTDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIHPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKVAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDLWD
>NZ_CP027452.1|WP_000490430.1|3159615_3160653_-|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKSWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEVFDKAGIAVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
>NZ_CP027452.1|WP_000372392.1|3160904_3161813_+|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>NZ_CP027452.1|WP_001090371.1|3161814_3163242_+|sulfate-adenylyltransferase-subunit-CysN
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEETFTRIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSESMPWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFSGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARVDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPVSQATAAPSEFSAFELELNALVRRHFPHWGARDLLGDK
>NZ_CP027452.1|WP_001173653.1|3163241_3163847_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTPQQREQHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>NZ_CP027452.1|WP_001246104.1|3163896_3164220_+|DUF3561-family-protein
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>NZ_CP027452.1|WP_000517479.1|3164413_3164725_+|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNNDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>NZ_CP027452.1|WP_000246133.1|3164743_3165454_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKHVVIAISPGDSRFAQLPLANHPQITVVDGGEERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAETGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>NZ_CP027452.1|WP_001219237.1|3165453_3165933_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYALGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>NZ_CP027452.1|WP_000568955.1|3165929_3166979_+|tRNA-pseudouridine(13)-synthase-TruD
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVMEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGALRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAEETELQTLLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>NZ_CP027452.1|WP_001295182.1|3166959_3167721_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW

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Crispr_ID: NZ_CP027452_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP027452_5

3743686-3743781

Orphan

Consensus_repeat	Method
GCGTTTTATCCGGCCTACAATGAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP027452_5

>merge|NZ_CP027452|5|3743686-3743781|CRISPRCasFinder
GCGTTTTATCCGGCCTACAATGAGCGCAACATACTGATCTATATGGTTTTATATGCCGGATGCAACGCTTGTGCGTTTTATCCGGCCTACAATGAG

>NZ_CP027452|5|4|3743686-3743781|CRISPRCasFinder
GCGTTTTATCCGGCCTACAATGAG	CGCAACATACTGATCTATATGGTTTTATATGCCGGATGCAACGCTTGT
GCGTTTTATCCGGCCTACAATGAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP027452.1\|WP_000255032.1\|3741069_3742590_+\|galactose/methyl-galactoside-ABC-transporter-ATP-binding-protein-MglA	unknown	unknown	gnl\|CDD\|182880
NZ_CP027452.1\|WP_001561654.1\|3751042_3752401_+\|aromatic-acid/H+-symport-family-MFS-transporter	unknown	unknown	gnl\|CDD\|273327
NZ_CP027452.1\|WP_000553553.1\|3747772_3748657_-\|cytidine-deaminase	unknown	unknown	gnl\|CDD\|181614
NZ_CP027452.1\|WP_000628659.1\|3738690_3739731_+\|HTH-type-transcriptional-regulator-GalS	unknown	unknown	gnl\|CDD\|236681
NZ_CP027452.1\|WP_021539249.1\|3745103_3746342_-\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|236967
NZ_CP027452.1\|WP_001295452.1\|3749478_3749877_-\|CidA/LrgA-family-protein	unknown	unknown	gnl\|CDD\|234983
NZ_CP027452.1\|WP_000425460.1\|3735612_3736449_-\|S-formylglutathione-hydrolase	unknown	unknown	gnl\|CDD\|178061
NZ_CP027452.1\|WP_000489252.1\|3733601_3735581_+\|catecholate-siderophore-receptor-CirA	unknown	unknown	gnl\|CDD\|236646
NZ_CP027452.1\|WP_001275118.1\|3742605_3743616_+\|galactose/methyl-galactoside-ABC-transporter-permease-MglC	unknown	unknown	gnl\|CDD\|181892
NZ_CP027452.1\|WP_000548294.1\|3730753_3731635_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182768
NZ_CP027452.1\|WP_052920577.1\|3737391_3738549_+\|DUF418-family-protein	unknown	unknown	gnl\|CDD\|182766
NZ_CP027452.1\|WP_000968208.1\|3748786_3749482_-\|CidB/LrgB-family-autolysis-modulator	unknown	unknown	gnl\|CDD\|182666
NZ_CP027452.1\|WP_001139613.1\|3736706_3737375_+\|GTP-cyclohydrolase-I-FolE	unknown	unknown	gnl\|CDD\|129173
NZ_CP027452.1\|WP_000920064.1\|3746903_3747623_-\|outer-membrane-permeability-protein-SanA	unknown	unknown	gnl\|CDD\|182765
NZ_CP027452.1\|WP_001561655.1\|3750007_3750916_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|274127
NZ_CP027452.1\|WP_001036964.1\|3740010_3741009_+\|galactose/glucose-ABC-transporter-substrate-binding-protein-MglB	unknown	unknown	gnl\|CDD\|185293
NZ_CP027452.1\|WP_021539250.1\|3743874_3745110_-\|NAD-dependent-dihydropyrimidine-dehydrogenase-subunit-PreA	unknown	unknown	gnl\|CDD\|236237
NZ_CP027452.1\|WP_000253273.1\|3731839_3733309_+\|lysine-specific-permease	unknown	unknown	gnl\|CDD\|182767
NZ_CP027452.1\|WP_001561653.1\|3752412_3753441_+\|gentisate-1,2-dioxygenase	unknown	unknown	gnl\|CDD\|131325
NZ_CP027452.1\|WP_001561652.1\|3753456_3754158_+\|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223257

Protein	Function_ID	Function_description	E-value
NZ_CP027452.1\|WP_000255032.1\|3741069_3742590_+\|galactose/methyl-galactoside-ABC-transporter-ATP-binding-protein-MglA	gnl\|CDD\|182880	PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional.	0
NZ_CP027452.1\|WP_001561654.1\|3751042_3752401_+\|aromatic-acid/H+-symport-family-MFS-transporter	gnl\|CDD\|273327	TIGR00895, transport_protein, benzoate transport. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	3.12365e-101
NZ_CP027452.1\|WP_000553553.1\|3747772_3748657_-\|cytidine-deaminase	gnl\|CDD\|181614	PRK09027, PRK09027, cytidine deaminase; Provisional.	0
NZ_CP027452.1\|WP_000628659.1\|3738690_3739731_+\|HTH-type-transcriptional-regulator-GalS	gnl\|CDD\|236681	PRK10401, PRK10401, HTH-type transcriptional regulator GalS.	0
NZ_CP027452.1\|WP_021539249.1\|3745103_3746342_-\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|236967	PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional.	4.15203e-171
NZ_CP027452.1\|WP_001295452.1\|3749478_3749877_-\|CidA/LrgA-family-protein	gnl\|CDD\|234983	PRK01821, PRK01821, hypothetical protein; Provisional.	8.10764e-72
NZ_CP027452.1\|WP_000425460.1\|3735612_3736449_-\|S-formylglutathione-hydrolase	gnl\|CDD\|178061	PLN02442, PLN02442, S-formylglutathione hydrolase.	6.77412e-137
NZ_CP027452.1\|WP_000489252.1\|3733601_3735581_+\|catecholate-siderophore-receptor-CirA	gnl\|CDD\|236646	PRK10064, PRK10064, catecholate siderophore receptor CirA; Provisional.	0
NZ_CP027452.1\|WP_001275118.1\|3742605_3743616_+\|galactose/methyl-galactoside-ABC-transporter-permease-MglC	gnl\|CDD\|181892	PRK09478, mglC, galactose/methyl galactoside ABC transporter permease MglC.	0
NZ_CP027452.1\|WP_000548294.1\|3730753_3731635_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182768	PRK10837, PRK10837, putative DNA-binding transcriptional regulator; Provisional.	0
NZ_CP027452.1\|WP_052920577.1\|3737391_3738549_+\|DUF418-family-protein	gnl\|CDD\|182766	PRK10835, PRK10835, hypothetical protein; Provisional.	0
NZ_CP027452.1\|WP_000968208.1\|3748786_3749482_-\|CidB/LrgB-family-autolysis-modulator	gnl\|CDD\|182666	PRK10711, PRK10711, hypothetical protein; Provisional.	1.74575e-153
NZ_CP027452.1\|WP_001139613.1\|3736706_3737375_+\|GTP-cyclohydrolase-I-FolE	gnl\|CDD\|129173	TIGR00063, GTP_cyclohydrolase_1, GTP cyclohydrolase I. alternate names: Punch (Drosophila),GTP cyclohydrolase I (EC 3.5.4.16) catalyzes the biosynthesis of formic acid and dihydroneopterin triphosphate from GTP. This reaction is the first step in the biosynthesis of tetrahydrofolate in prokaryotes, of tetrahydrobiopterin in vertebrates, and of pteridine-containing pigments in insects. [Biosynthesis of cofactors, prosthetic groups, and carriers, Folic acid].	6.94767e-106
NZ_CP027452.1\|WP_000920064.1\|3746903_3747623_-\|outer-membrane-permeability-protein-SanA	gnl\|CDD\|182765	PRK10834, PRK10834, outer membrane permeability protein SanA.	0
NZ_CP027452.1\|WP_001561655.1\|3750007_3750916_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|274127	TIGR02424, TF_pcaQ, pca operon transcription factor PcaQ. Members of this family are LysR-family transcription factors associated with operons for catabolism of protocatechuate. Members occur only in Proteobacteria. [Energy metabolism, Other, Regulatory functions, DNA interactions].	4.91888e-49
NZ_CP027452.1\|WP_001036964.1\|3740010_3741009_+\|galactose/glucose-ABC-transporter-substrate-binding-protein-MglB	gnl\|CDD\|185293	PRK15395, PRK15395, galactose/glucose ABC transporter substrate-binding protein MglB.	0
NZ_CP027452.1\|WP_021539250.1\|3743874_3745110_-\|NAD-dependent-dihydropyrimidine-dehydrogenase-subunit-PreA	gnl\|CDD\|236237	PRK08318, PRK08318, NAD-dependent dihydropyrimidine dehydrogenase subunit PreA.	0
NZ_CP027452.1\|WP_000253273.1\|3731839_3733309_+\|lysine-specific-permease	gnl\|CDD\|182767	PRK10836, PRK10836, lysine transporter; Provisional.	0
NZ_CP027452.1\|WP_001561653.1\|3752412_3753441_+\|gentisate-1,2-dioxygenase	gnl\|CDD\|131325	TIGR02272, gentisate_12-dioxygenase, gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.	0
NZ_CP027452.1\|WP_001561652.1\|3753456_3754158_+\|fumarylacetoacetate-hydrolase-family-protein	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	9.25827e-90

>NZ_CP027452.1|WP_001275118.1|3742605_3743616_+|galactose/methyl-galactoside-ABC-transporter-permease-MglC
MSALNKKSFLTYLKEGGIYVVLLVLLAIIIFQDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLQSMDNANKVFPEMATMPIALVILIVCAIGAVIGLINGLIIAYLNVTPFITTLGTMIIVYGINSLYYDFVGASPISGFDSGFSTFAQGFVALGSFRLSYITFYALIAVAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVGLNLLMIYALSGVFYAFGGMLEAGRIGSATNNLGFMYELDAIAACVVGGVSFSGGVGTVIGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGAIIIFAVALDSLKYARKK
>NZ_CP027452.1|WP_000255032.1|3741069_3742590_+|galactose/methyl-galactoside-ABC-transporter-ATP-binding-protein-MglA
MVSSTTPSSGEYLLEMSGINKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGTILFQGKEIDFHSAKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRETKAIFDELDIDIDPRARVGTLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEVTVLRDGQWIATEPLAGLTMDKIIAMMVGRSLNQRFPDKENKPGEVILEVRNLTSLRQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKGKGIIIISSEMPELLGITDRILVMSNGLVSGIVDTKTTTQNEILRLASLHL
>NZ_CP027452.1|WP_001036964.1|3740010_3741009_+|galactose/glucose-ABC-transporter-substrate-binding-protein-MglB
MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK
>NZ_CP027452.1|WP_000628659.1|3738690_3739731_+|HTH-type-transcriptional-regulator-GalS
MITIRDVARQAGVSVATVSRVLNNSTLVSADTREAVMKAVSELDYRPNANAQALATQVSDTIGVVVMDVSDAFFGALVKAVDLVAQQHQKYVLIGNSYHEAEKERHAIEVLIRQRCNALIVHSKALSDDELAQFMDNIPGMVLINRVVPGYAHRCVCLDNLSGARMATRMLLNNGHQRIGYLSSSHGIEDDAMRKAGWMSALKEQDIIPPESWIGTGTPDMPGGEAAMVELLGRNLQLTAVFAYNDNMAAGALTALKDNGIAIPLHLSIIGFDDIPIARYTDPQLTTVRYPIASMAKLATELALQGAAGNIDPRASHCFMPTLVRRHSVATRQNAAAITNSTNQAM
>NZ_CP027452.1|WP_052920577.1|3737391_3738549_+|DUF418-family-protein
MERNVTLDFVRGVAILGILLLNISAFGLPKAAYLNPAWYGAITPQDAWTWAFLDLIGQVKFLTLFALLFGAGLQMLLPRGRRWIQSRLTLLVLLGFIHGLLFWDGDILLAYGLVGLICWRLVRDAPSVKSLFNTGVMLYLVGLGVLLLLGLISDSQTSRAWTPDASAILYEKYWKLHGGVEAIGNRADGVGNSLLALGAQYGWQLAGMMLIGAALMRSGWLKGQFSLRHYRRTGFVLVAIGVIINLPAIALQWRLDWAYRWCAFLLQMPRELSAPFQAIGYASLFYGFWPQLSRFKLVLAIACVGRMALTNYLLQTLICTTLFYHLGLFMHFDRLELLAFVIPVWLANILFSVIWLRYFRQGPVEWLWRQLTLRAAGPARSKTSR
>NZ_CP027452.1|WP_001139613.1|3736706_3737375_+|GTP-cyclohydrolase-I-FolE
MPSLSKEAALVHEALVARGLETPLRPPVHEMDNETRKSLIAGHMTEIMQLLNLDLADDSLMETPHRIAKMYVDEIFSGLDYANFPKITLIENKMKVDEMVTVRDITLTSTCEHHFVTIDGKATVAYIPKDSVIGLSKINRIVQFFAQRPQVQERLTQQILIALQTLLGTNNVAVSIDAVHYCVKARGIRDATSATTTTSLGGLFKSSQNTRHEFLRAVRHHN
>NZ_CP027452.1|WP_000425460.1|3735612_3736449_-|S-formylglutathione-hydrolase
MEMLEEHRCFEGWQQRWRHDSSTLNCPMTFSIFLPPPRDHTPPPVLYWLSGLTCNDENFTTKAGAQRVAAELGIVLVMPDTSPRGEQVANDDGYDLGQGAGFYLNATQPPWATHYRMYDYLRDELPALVQSQFNVSDRCAISGHSMGGHGALIMALKNPGKYTSVSAFAPIVNPCSVPWGIKAFSRYLGEDKNAWLEWDSCALMYASNAQDAIPTLIDQGDNDQFLADQLQPAVLAEAARQKAWPMTLRIQPGYDHSYYFIASFIEDHLRFHAQYLLK
>NZ_CP027452.1|WP_000489252.1|3733601_3735581_+|catecholate-siderophore-receptor-CirA
MFRLNPFVRVGLCLSAISCAWPVLAVDDDGETMVVTASSVEQNLKDAPASISVITQEDLQRKPVQNLKDVLKEVPGVQLTNEGDNRKGVSIRGLDSSYTLILVDGKRVNSRNAVFRHNDFDLNWIPVDSIERIEVVRGPMSSLYGSDALGGVVNIITKKIGQKWSGTVTVDTTIQEHRDRGDTYNGQFFTSGPLIDGVLGMKAYGSLAKREKDDPQNSTTTDTGETPRIEGFSSRDGNVEFAWTPNQNHDFTAGYGFDRQDRDSDSLDKNRLERQNYSVSHNGRWDYGTSELKYYGEKVENKNPGNSSPITSESNTVDGKYTLPLTAINQFLTVGGEWRHDKLSDAVNLTGGTSSKTSASQYALFVEDEWRIFEPLALTTGVRMDDHETYGEHWSPRAYLVYNATDTVTVKGGWATAFKAPSLLQLSPDWTSNSCRGACKIVGSPDLKPETSESWELGLYYMGEEGWLEGVESSVTVFRNDVKDRISISRTSDVNAAPGYQNFVGFTANGVPVFSYYNVNKARIQGVETELKIPFNDEWKLSINYTYNDGRDVSNGENKPLSDLPFHTANGTLDWKPLALEDWSFYVSGHYTGQKRADSATAKTPGGYTIWNTGAAWQVTKDVKLRAGVLNLGDKDLSRDDYSYNEDGRRYFMAVDYRF
>NZ_CP027452.1|WP_000253273.1|3731839_3733309_+|lysine-specific-permease
MVSETKTTEAPGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVEEGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWFPDTPGWIWSALFLGVIFLLNYISVRGFGEAEYWFSLIKVTTVIVFIIVGVLMIIGIFKGAQPAGWSNWTIGEAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESEDPAKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQHAGLLSAAAVMNAVILTAVLSAGNSGMYASTRMLYTLACDGKAPRIFAKLSRGGVPRNALYATTVIAGLCFLTSMFGNQTVYLWLLNTSGMTGFIAWLGIAISHYRFRRGYVLQGHDINDLPYRSGFFPLGPIFAFILCLIITLGQNYEAFLKDTIDWGGVAATYIGIPLFLIIWFGYKLIKGTHFVRYSEMKFPQNDKK
>NZ_CP027452.1|WP_000548294.1|3730753_3731635_+|LysR-family-transcriptional-regulator
MHITLRQLEVFAEVLKSGSTTQASVMLALSQSAVSAALTDLEGQLGVQLFDRVGKRLVVNEHGRLLYPRALALLEQAVEIEQLFREDNGAIRIYASSTIGNYILPAVIARYRHDYPQLPIELSVGNSQDVMQAVLDFRVDIGFIEGPCHSTEIISEPWLEDELVVFAAPTSPLARGPVTLEQLAAAPWILRERGSGTREIVDYLLLSHLPKFEMAMELGNSEAIKHAVRHGLGISCLSRRVIEDQLQAGTLSEVAVPLPRLMRTLWRIHHRQKHLSNALRRFLDYCDPANVPR
>NZ_CP027452.1|WP_021539250.1|3743874_3745110_-|NAD-dependent-dihydropyrimidine-dehydrogenase-subunit-PreA
MLTKDLSITFCGVKFPNPFCLSSSPVGNCYEMCAKAYDTGWGGVVFKTIGFFIANEVSPRFDHLVKEDTGFIGFKNMEQIAEHPLEDNLAALRRLKEDYPDKVLIASIMGENEQQWEELARLVQEAGADMIECNFSCPQMTSHAMGSDVGQSPELVEKYCRAVKRGSTLPMLAKMTPNIGDMCEVALAAKRGGADGIAAINTVKSITNIDLNQKIGMPIVNGKSSISGYSGKAVKPIALRFIQQMRTHPELRDFPISGIGGIETWEDAAEFLLLGAATLQVTTGIMQYGYRIVEDMASGLSHYLADQGFDSLQDMVGLANNNIVPAEDLDRSYIVYPHINLDKCVGCGRCYISCYDGGHQAMEWSEKTRTPHCNTEKCVGCLLCGHVCPVGCIDLGEVKFKKGEKEHPVTL
>NZ_CP027452.1|WP_021539249.1|3745103_3746342_-|NAD(P)-dependent-oxidoreductase
MPQQNYLDELTPAFTPLLAIKEASRCLLCHDAPCSQACPAQTDPGKFIRSIYFRNFKGAAETIRENNALGAVCARVCPTEKLCQSGCTRAGVDTPIDIGRLQRFVTDFEQQTGMEIYQPGTKTLGKVAIIGAGPAGLQASVTLTNQGYDVTIYEKEAQAGGWLRNGIPQFRLPQSVLDAEIARIEKMGVTIKCNKEIGKTLTLEQLKAENRAVLVTVGLSSGSGLPLFEHSDVEIAVDFLQRARQAQGDISIPQSALIIGGGDVAMDVASTLKVLGCQAVTCVAREELDEFPASEKEFASARELGVSIIDGFTPVAVEGNKVTFKHVRLPGELTMAADKIILAVGQHARLDAFAELEPQRNTINTQNYQTRDPQVFAAGDIVEGDKTVVYAVKTGKEAAGAIHHYLEGACSC
>NZ_CP027452.1|WP_000920064.1|3746903_3747623_-|outer-membrane-permeability-protein-SanA
MLKRVFLSLLVLIGLLLLTVLGLDRWMSWKTAPYIYDELQDLPYRQVGVVLGTAKYYRTGVINQYYRYRIQGAINAYNSGKVNYLLLSGDNALQSYNEPMTMRKDLIAAGVDPSDIVLDYAGFRTLDSIVRTRKVFDTNDFIIITQRFHCERALFIALHMGIQAQCYAVPSPKDMLSVRIREFAARFGALADLYIFKREPRFLGPLVPIPAMHQVPEDAQGYPAVTPEQLLELQKKQGK
>NZ_CP027452.1|WP_000553553.1|3747772_3748657_-|cytidine-deaminase
MHPRFQTAFAQLADNLQSALEPILADKYFPALLTGEQVSSLKSATGLDEDALAFALLPLAAACARTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITVNYTPCGHCRQFMNELNSGLDLRIHLPGREAHALRDYLPDAFGPKDLEIKTLLMDEQDHGYALTGDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSGSYAENAAFNPTLPPLQGALILLNLKGYDYPDIQRAVLAEKADAPLIQWDATSATLKALGCHNIDRVLLA
>NZ_CP027452.1|WP_000968208.1|3748786_3749482_-|CidB/LrgB-family-autolysis-modulator
MMANIWWSLPLTLIVFFAARKLAARYKFPLLNPLLVAMVVIIPFLMLTGISYDSYFKGSEVLNDLLQPAVVALAYPLYEQLHQIRARWKSIITICFIGSVVAMVTGTSVALLMGASPEIAASILPKSVTTPIAMAVGGSIGGIPAISAVCVIFVGILGAVFGHTLLNAMRIRTKAARGLAMGTASHALGTARCAELDYQEGAFSSLALVLCGIITSLIAPFLFPIILAVMG
>NZ_CP027452.1|WP_001295452.1|3749478_3749877_-|CidA/LrgA-family-protein
MSKTLNIIWQYLRAFVLIYACLYAGIFIASLLPVTIPGSIIGMLILFVLLALQILPAKWVNPGCYVLIRYMALLFVPIGVGVMQYFDLLRAQFGPVVVSCAVSTLVVFLVVSWSSQLVHGERKVVGQKGSEE
>NZ_CP027452.1|WP_001561655.1|3750007_3750916_-|LysR-family-transcriptional-regulator
MANWAQKLKLHHLQMLVALGEQGNLTHVARMMNITQPALSKWLSQLEDEIGLTLFERHSKGLRPTEGGKLLLQHAQRLINDMERSQHELARFKQGGLVGSLKIGCSPVATDCVSQAILHLLKEMPTLHLNIEEKVMTPLLQDLLAGSVDVVVGRIGGRALQLPLNYRVLYTEPVCFVARPEHPLAKYATLSWNDLANWRWIVWPTGTPIRISIDNALVDHGVMLPENTIESASMNVSTNLLQSSDMISILSLRLAQRYASQGQLVILNLPKIEQKGSVGVFWRNNETPSYALSQFLHFLQQN
>NZ_CP027452.1|WP_001561654.1|3751042_3752401_+|aromatic-acid/H+-symport-family-MFS-transporter
MTQRRDLQALIDAAPVGKMQWRVIICCFLVVMLDGFDTAAIGFIAPDIRTHWQLTAGDLAPLFGAGLLGLTAGALLCGPLSDRFGRKRVIELCVFLFGALSLASAFSPDLQTLVFLRFLTGLGLGGAMPNTITMTSEYLPARRRGALVTLMFCGFTLGSAFGGIVSAQLVPVIGWHGILVLGGVLPLMLFVALLVVLPESPRWQVRRQLPQAVIAKTVSAIIRERYVDTHFYLIESASVTKGSIRQLFMGRQLPITLMLWVVFFMSLLIIYLLSSWMPTLLNHRGIDLQHASWVTAAFQIGGTLGALALGVLMDKFNPFRVLALSYAIGAVCIVMIGLSQDGLWLMALAIFGTGIGISGSQVGLNALTATLYPTQSRATGVSWSNAVGRCGAIVGSLSGGVMMAMNFSFDTLFFIIAVPAAISAVMLTQLITVVRQSTSVPDSLPHAGVVNE
>NZ_CP027452.1|WP_001561653.1|3752412_3753441_+|gentisate-1,2-dioxygenase
MTDNNQNSREQFYQHISGQNLTPLWESLHHLVPKTPNANCAPAYWNYQEIRPLLLESGSLIGAKEAVRRVLVLENPALRGQSSITATLYAGLQLIMPGEVAPSHRHNQSALRFIVEGKGAFTAVDGERTSMNEGDFILTPQWRWHDHGNPGDEPVIWLDGLDLPLVNTLGCGFAEDYPEEQQPVTRKEGDYLPRYAANMLPLRHQTGNSSPIFNYRYDRSREVLHDLTRLGDADEWDGYKMRYVNPVTGGYPMPSMGAFLQLLPKGFASRVARTTDSTIYHVVEGSGQVTIGNETFSFSAKDIFVVPTWHGVSFQTTQDTVLFSFSDRPVQEALGLFREARY
>NZ_CP027452.1|WP_001561652.1|3753456_3754158_+|fumarylacetoacetate-hydrolase-family-protein
MTQYVFEPQAPVTVPVVGSDEQFPVRRVYCVGRNYAAHAREMGFDPDREPPFFFCKPADAIVPVAAGETLALPYPAQTDNYHYEIELVVAIGKKGSDIPLENAHEYVWGYATGLDMTRRDRQMEMRQMGRPWEIGKAFDLSAPIAPLHKASETGGIDNAPIWLQVNGEDHQRSDIRHLIWSVNETISYLSGFFELQPGDLIFTGTPEGVGSVVKGDVITGNVEGLTPIAVKIV

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Crispr_ID: NZ_CP027452_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP027452_6

4222868-4222991

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP027452_6

>merge|NZ_CP027452|6|4222868-4222991|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>NZ_CP027452|6|5|4222868-4222991|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP027452.1\|WP_000102278.1\|4231887_4231977_+\|stress-response-protein-YnhF	unknown	unknown	unknown
NZ_CP027452.1\|WP_000269493.1\|4229634_4230567_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948
NZ_CP027452.1\|WP_000701039.1\|4232142_4233312_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP027452.1\|WP_000504339.1\|4217708_4218356_+\|YdhW-family-putative-oxidoreductase-system-protein	unknown	unknown	gnl\|CDD\|182160
NZ_CP027452.1\|WP_001317862.1\|4218419_4219088_+\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|274451
NZ_CP027452.1\|WP_001273564.1\|4215602_4217705_+\|aldehyde-ferredoxin-oxidoreductase	unknown	unknown	gnl\|CDD\|236629
NZ_CP027452.1\|WP_001069962.1\|4219084_4219870_+\|thiosulfate-reductase-cytochrome-B-subunit	unknown	unknown	gnl\|CDD\|184968
NZ_CP027452.1\|WP_001295403.1\|4212321_4213734_-\|pyruvate-kinase-PykF	unknown	unknown	gnl\|CDD\|181699
NZ_CP027452.1\|WP_001174939.1\|4224603_4225977_-\|multidrug-efflux-MATE-transporter-MdtK	unknown	unknown	gnl\|CDD\|234981
NZ_CP027452.1\|WP_000098896.1\|4226871_4228020_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
NZ_CP027452.1\|WP_001182362.1\|4228310_4229522_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|182924
NZ_CP027452.1\|WP_000007283.1\|4233457_4234039_-\|superoxide-dismutase-[Fe]	unknown	unknown	gnl\|CDD\|182534
NZ_CP027452.1\|WP_000190982.1\|4230563_4231589_-\|HTH-type-transcriptional-repressor-PurR	unknown	unknown	gnl\|CDD\|236739
NZ_CP027452.1\|WP_000528342.1\|4214290_4214500_+\|fumarate-hydratase-FumD	unknown	unknown	gnl\|CDD\|182359
NZ_CP027452.1\|WP_001695795.1\|4214955_4215582_+\|ferredoxin-like-protein	unknown	unknown	gnl\|CDD\|182135
NZ_CP027452.1\|WP_000212668.1\|4222427_4222733_-\|monooxygenase	unknown	unknown	gnl\|CDD\|182975
NZ_CP027452.1\|WP_000587571.1\|4219873_4220686_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182159
NZ_CP027452.1\|WP_106889511.1\|4220691_4222302_-\|FAD-NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|182134
NZ_CP027452.1\|WP_000534265.1\|4223306_4224563_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|137602
NZ_CP027452.1\|WP_106889512.1\|4226202_4226832_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|183846

Protein	Function_ID	Function_description	E-value
NZ_CP027452.1\|WP_000701039.1\|4232142_4233312_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	9.34269e-98
NZ_CP027452.1\|WP_000269493.1\|4229634_4230567_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0
NZ_CP027452.1\|WP_000504339.1\|4217708_4218356_+\|YdhW-family-putative-oxidoreductase-system-protein	gnl\|CDD\|182160	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein.	1.65892e-122
NZ_CP027452.1\|WP_001317862.1\|4218419_4219088_+\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|274451	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase. [Energy metabolism, Electron transport].	3.72056e-77
NZ_CP027452.1\|WP_001273564.1\|4215602_4217705_+\|aldehyde-ferredoxin-oxidoreductase	gnl\|CDD\|236629	PRK09849, PRK09849, putative oxidoreductase; Provisional.	0
NZ_CP027452.1\|WP_001069962.1\|4219084_4219870_+\|thiosulfate-reductase-cytochrome-B-subunit	gnl\|CDD\|184968	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional.	1.75608e-161
NZ_CP027452.1\|WP_001295403.1\|4212321_4213734_-\|pyruvate-kinase-PykF	gnl\|CDD\|181699	PRK09206, PRK09206, pyruvate kinase PykF.	0
NZ_CP027452.1\|WP_001174939.1\|4224603_4225977_-\|multidrug-efflux-MATE-transporter-MdtK	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
NZ_CP027452.1\|WP_000098896.1\|4226871_4228020_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
NZ_CP027452.1\|WP_001182362.1\|4228310_4229522_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0
NZ_CP027452.1\|WP_000007283.1\|4233457_4234039_-\|superoxide-dismutase-[Fe]	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	3.77321e-138
NZ_CP027452.1\|WP_000190982.1\|4230563_4231589_-\|HTH-type-transcriptional-repressor-PurR	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
NZ_CP027452.1\|WP_000528342.1\|4214290_4214500_+\|fumarate-hydratase-FumD	gnl\|CDD\|182359	PRK10292, PRK10292, fumarate hydratase FumD.	2.11502e-34
NZ_CP027452.1\|WP_001695795.1\|4214955_4215582_+\|ferredoxin-like-protein	gnl\|CDD\|182135	PRK09898, PRK09898, ferredoxin-like protein.	7.7474e-138
NZ_CP027452.1\|WP_000212668.1\|4222427_4222733_-\|monooxygenase	gnl\|CDD\|182975	PRK11118, PRK11118, putative monooxygenase; Provisional.	5.59739e-64
NZ_CP027452.1\|WP_000587571.1\|4219873_4220686_+\|hypothetical-protein	gnl\|CDD\|182159	PRK09946, PRK09946, hypothetical protein; Provisional.	1.03394e-173
NZ_CP027452.1\|WP_106889511.1\|4220691_4222302_-\|FAD-NAD(P)-binding-protein	gnl\|CDD\|182134	PRK09897, PRK09897, FAD-NAD(P)-binding protein.	0
NZ_CP027452.1\|WP_000534265.1\|4223306_4224563_+\|hypothetical-protein	gnl\|CDD\|137602	PRK09945, PRK09945, hypothetical protein; Provisional.	0
NZ_CP027452.1\|WP_106889512.1\|4226202_4226832_+\|riboflavin-synthase	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	4.46045e-118

>NZ_CP027452.1|WP_000212668.1|4222427_4222733_-|monooxygenase
MATLLQLHFAFNGPFGDAMVEQLEPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQAKLA
>NZ_CP027452.1|WP_106889511.1|4220691_4222302_-|FAD-NAD(P)-binding-protein
MKKIAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEASHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHVWPDEEEATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVVFHRDNASEKLNITLMSRTGILPEADFYCPIPYEPLHIVTDQALNAEIQKGEVGLLDRVFRLIVEEIKFADPDWSQRIALESLNVDSFAQAWFAERKQRDPFDWAEKNLQEVERNKREKHTVPWRYVILRLHEAVQEIVPHLNEHDHKRFSKGLARVFIDNYAAIPSESIRRLLALREAGIIHILALGEDYEMEINESRTVLKTEDNSYSFDVFIDARGQRPLKVKDIPFPGLREQLQKTGDEIPDVSEDYTLQQPEEIRGRVAFGALPWLMHDQPFVQGLTACAEIGEAIAQAVVKPASRARRRLSFNQM
>NZ_CP027452.1|WP_000587571.1|4219873_4220686_+|hypothetical-protein
MIITRADLREWRIGAVMYRWFLRHFPRGGSYADIHHALIEEGYTDWAESLVEYAWKKWLADENFAHQEVSSMQKLATDPGERAFCSQFARSDDHARIGCCEDNARIATAGYAAQIASMGYSVRIGSVGFNSHIGSSGERARVAVTGNSSRISSAGDSSRIANTGMRVRVCTLGERCHVASNGDLVQIASFGANARIANSGDNVHIIASGEDSTIVSTGVVDSIILGPGGSAALAYHDGERVRFAVAIEGENNIRAGVRYRLNEQHQFVEC
>NZ_CP027452.1|WP_001069962.1|4219084_4219870_+|thiosulfate-reductase-cytochrome-B-subunit
MNPSQHAEQFQSQLANYVPLFTPQFWPVWLIIAGLLLVGMWLVLGLHALLRARGVKKSANDHGEKVYLYSKAVRLWHWSNALLFVLLLASGLINHFALVGATTVKSLVAVHEVCGFLLLACWLGFVLINAVGGNGHHYRIRRQGWLERAAKQTRFYLFGIMQGEEHPFPATTQSKFNPLQQVAYVGVMYGLLPLLLLTGLLCLYPQAVGDVFPGVRYWLLQAHFALAFISLFFIFGHLYLCTTGRTPHETFKSMVDGYHRH
>NZ_CP027452.1|WP_001317862.1|4218419_4219088_+|4Fe-4S-dicluster-domain-containing-protein
MSFTRRKFVLGMGTVIFFTGSASSLLANTMQEKKVRYAMIHDESRCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGREDSPEIQAWLQENKYYQYQLPGAGKPHLYRRFGQHLIKKENV
>NZ_CP027452.1|WP_000504339.1|4217708_4218356_+|YdhW-family-putative-oxidoreductase-system-protein
MGEMNHQDELPLAKVSEVDEAKRQWLQGMRHPVDTVTEPEPAEILAEFIRQHSAAGQLVARAVFLSPPYSVAEEELSVLLENIKQNGDHADIACMTGSQDDYYYSTQAMSENYAAMSLQVVEQDICRAIAHAVRFECQTYPRPYKVAMLMQAPYYFQEAQIEAAIAAMDIAPEYADIRQVESSTAVLYLFSERFMTYGKAYGLCEWFEVEQFQNP
>NZ_CP027452.1|WP_001273564.1|4215602_4217705_+|aldehyde-ferredoxin-oxidoreductase
MANGWTGNILRVNLTTGNITLEDSSKFKSFVGGMGFGYKIMYDEVPPGTKPFDEANKLVFATGPLTGSGAPCSSRVNITSLSTFTKGNLVVDAHMGGFFAAQMKFAGYDVIIIEGKAKSPVWLNIKDDKVSLEKADLLWGKGTRATTEEICRLTSPETCVAAIGQAGENLVPLSGMLNSRNHSGGAGTGAIMGSKNLKAIAVEGTKGVNIADRQEMKRLNDYMMTELIGANNNHVVPSTPQSWAEYSDPKSRWTARKGLFWGAAEGGPIETGEIPPGNQNTVGFRTYKSVFDLGPAAEKYTVKMSGCHSCPIRCMTQMNIPRVKEFGVPSTGGNTCVANFVHTTIFPNGPKDFEDKDDGRVIGNLVGLNLFDDYGLWCNYGQLHRDFTYCYSKGVFKRVLPAEEYAEIRWDQLEAGDVNFIKDFYYRLAHRVGELSHLADGSYAIAERWNLGEEYWGYAKNKLWSPFGYPVHHANEASAQVGSIVNCMFNRDCMTHTHINFIGSGLPLKLQREVAKELFGSEDAYDETKNYTPINDAKIKYAKWSLLRVCLHNAVTLCNWVWPMTVSPLKSRNYRGDLALEAKFFKAITGEDMTQEKLDLAAERIFTLHRAYTVKLMQTKDMRNEHDLICSWVFDKDPQIPVFTEGTDKMDRDDMHASLTMFYKEMGWDPQLGCPTRKTLQRLGLEDIAADLAAHNLLPA
>NZ_CP027452.1|WP_001695795.1|4214955_4215582_+|ferredoxin-like-protein
MTPVDRPLLNIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTNLNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITV
>NZ_CP027452.1|WP_000528342.1|4214290_4214500_+|fumarate-hydratase-FumD
MGNRTKEDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAMETVINALVK
>NZ_CP027452.1|WP_001295403.1|4212321_4213734_-|pyruvate-kinase-PykF
MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSRLEFNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVPSGTTNTASVHVL
>NZ_CP027452.1|WP_000534265.1|4223306_4224563_+|hypothetical-protein
MGSDAKNLMSDGNVQIVKTGEVIGATQLTEGELIVEAGGRAENTVVTGAGWLKVATGGIAKCTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRHPEGEFSVDKGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGELLVYPGGEASNCEINQGGVFMLAGKANDTLLAGGTMNNLGGEDSDTIVENGAIYRLGTDGLQLYSSGKTQNLSVNVGGRAEVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRAPVELTGSVALLDGASMIIGYGADLQQSTITVQQGGVLILDGSTVKGDSVTFSVGNINLNGGKLWLITDAATQVHLKVKRLRGEGAICLQTSAKEISPDFINVKGEVTGDIHVEITDASRQTLCNALKLQPDEDGIGATLQPA
>NZ_CP027452.1|WP_001174939.1|4224603_4225977_-|multidrug-efflux-MATE-transporter-MdtK
MQKYISEARLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLIMLVLWNAGYIIRSMENIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSMRDIRNEKGTAKPDPAVMKRLIQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTVSLREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITFTAYWVLGLPSGYILALTDLVVEPMGPAGFWIGFIIGLTSAAIMMMLRMRFLQRLPSAIILQRAAR
>NZ_CP027452.1|WP_106889512.1|4226202_4226832_+|riboflavin-synthase
MVQGTAKLVSIDEKPNFRTHVVELPDHMLEGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAARENAMNQPGTEA
>NZ_CP027452.1|WP_000098896.1|4226871_4228020_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVPDDNWYRIANELLSRAGIAINGSAPADIRVKNPDFFKRVLQEGSLGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKDTLRIAGARLFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSVVGVTISAEQQKMAQERCEGLDVTILLQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLNVDPWINKYIFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPEIADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSRGVENGLRVAR
>NZ_CP027452.1|WP_001182362.1|4228310_4229522_-|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVSASLSLFLAGFAAAQLLWGPLSDRYGRKPVLLIGLTIFALGSLGMLWVENAATLLVLRFVQAVGVCAAAVIWQALVTDYYPSQKVNRIFATIMPLVGLSPALAPLLGSWLLVHFSWQAIFATLFAITVVLILPIFWLKPTTKARNNSQDGLTFTDLLRSKTYRGNVLIYAACSASFFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLVLFAVSVIATWAAGFISHVSLVEILIPFCVMAIANGAIYPIVVAQALRPFPHATGRAAALQNTLQLGLCFLASLVVSWLISISTPLLTTTSVMLSTVVLVALGYMMQRCEEVDCQNHGNAEVAHSESH
>NZ_CP027452.1|WP_000269493.1|4229634_4230567_+|LysR-family-transcriptional-regulator
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIVRPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYAFRDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKRLVVPDWESSATCISAGLCIGMVPTHFAKPWLNEGKWVALELENPFPDSACCLTWQQNDMSPALTWLLEYLGDSETLNKEWLREPEETPATGD
>NZ_CP027452.1|WP_000190982.1|4230563_4231589_-|HTH-type-transcriptional-repressor-PurR
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYRR
>NZ_CP027452.1|WP_000102278.1|4231887_4231977_+|stress-response-protein-YnhF
MSTDLKFSLVTTIIVLGLIVAVGLTAALH
>NZ_CP027452.1|WP_000701039.1|4232142_4233312_+|MFS-transporter
MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLMLSRILTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRMSFLATAGLGVISMVSLFFSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHATPVFVTAMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNEFGAAISMVVWGAATFAVVPPLQMRVMRVASEAPGLSSSVNIGAFNLGNALGAAAGGAVISAGLGYSFVPVMGAIVAGLALLLVFMSARKQPEAVCVANS
>NZ_CP027452.1|WP_000007283.1|4233457_4234039_-|superoxide-dismutase-[Fe]
MSFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVAKNLAA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP027452_2	2.1\|675999\|24\|NZ_CP027452\|PILER-CR	675999-676022	24	NC_049946	Escherichia virus Lambda_4A7 genome assembly, chromosome: 1	37652-37675	0	1.0
NZ_CP027452_2	2.1\|675999\|24\|NZ_CP027452\|PILER-CR	675999-676022	24	LR595861	Escherichia virus Lambda_4C10 genome assembly, chromosome: 1	37935-37958	0	1.0
NZ_CP027452_2	2.2\|676046\|25\|NZ_CP027452\|PILER-CR	676046-676070	25	NC_049946	Escherichia virus Lambda_4A7 genome assembly, chromosome: 1	37604-37628	0	1.0
NZ_CP027452_2	2.2\|676046\|25\|NZ_CP027452\|PILER-CR	676046-676070	25	LR595861	Escherichia virus Lambda_4C10 genome assembly, chromosome: 1	37887-37911	0	1.0
NZ_CP027452_4	4.17\|3159474\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3159474-3159505	32	NZ_CP038506	Escherichia coli strain 28Eco12 plasmid p28Eco12, complete sequence	11835-11866	0	1.0
NZ_CP027452_4	4.17\|3159474\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3159474-3159505	32	NZ_CP019283	Escherichia coli strain 13P484A plasmid p13P484A-3, complete sequence	42147-42178	0	1.0
NZ_CP027452_4	4.17\|3159474\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3159474-3159505	32	CP042641	Escherichia coli strain NCYU-24-74 plasmid pNCYU-24-74-3, complete sequence	36520-36551	0	1.0
NZ_CP027452_4	4.17\|3159474\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3159474-3159505	32	NZ_CP034821	Salmonella sp. SSDFZ54 plasmid pTB502, complete sequence	1557-1588	0	1.0
NZ_CP027452_4	4.17\|3159474\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3159474-3159505	32	NZ_CP027443	Escherichia coli strain 2013C-3252 plasmid unnamed1, complete sequence	9506-9537	0	1.0
NZ_CP027452_4	4.17\|3159474\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3159474-3159505	32	NZ_CP027575	Escherichia coli strain 2013C-4081 plasmid unnamed2	94756-94787	0	1.0
NZ_CP027452_4	4.17\|3159474\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3159474-3159505	32	NZ_CP027223	Escherichia coli strain 2015C-3101 plasmid unnamed2	65534-65565	0	1.0
NZ_CP027452_4	4.17\|3159474\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3159474-3159505	32	NZ_CP030188	Salmonella enterica strain SA20094620 plasmid pSA20094620.3, complete sequence	61916-61947	0	1.0
NZ_CP027452_4	4.17\|3159474\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3159474-3159505	32	NZ_CP027590	Escherichia coli strain 2014C-3011 plasmid unnamed2	64165-64196	0	1.0
NZ_CP027452_4	4.17\|3159474\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3159474-3159505	32	NZ_CP039862	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014880 plasmid p16-6773.2, complete sequence	20286-20317	0	1.0
NZ_CP027452_4	4.17\|3159474\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3159474-3159505	32	NZ_CP033632	Escherichia coli isolate ECCNB12-2 plasmid pTB-nb1, complete sequence	119284-119315	0	1.0
NZ_CP027452_4	4.17\|3159474\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3159474-3159505	32	NZ_AP018798	Escherichia coli strain E2855 plasmid pE2855-2, complete sequence	85099-85130	0	1.0
NZ_CP027452_4	4.17\|3159474\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3159474-3159505	32	CP012494	Escherichia coli strain CFSAN004177 plasmid pCFSAN004177G_03, complete sequence	46688-46719	0	1.0
NZ_CP027452_4	4.17\|3159474\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3159474-3159505	32	CP027320	Escherichia coli strain 2014C-3084 plasmid unnamed1	42116-42147	0	1.0
NZ_CP027452_4	4.17\|3159474\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3159474-3159505	32	NC_013370	Escherichia coli O111:H- str. 11128 plasmid pO111_2, complete sequence	87237-87268	0	1.0
NZ_CP027452_4	4.17\|3159474\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3159474-3159505	32	NZ_CP026475	Escherichia coli strain KBN10P04869 plasmid pKBN10P04869B, complete sequence	81853-81884	0	1.0
NZ_CP027452_4	4.17\|3159474\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3159474-3159505	32	MN510445	Escherichia coli strain JIE250 plasmid pJIE250_3, complete sequence	70500-70531	0	1.0
NZ_CP027452_4	4.17\|3159474\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3159474-3159505	32	MN510447	Escherichia coli strain TZ20_1P plasmid pTZ20_1P, complete sequence	47861-47892	0	1.0
NZ_CP027452_4	4.17\|3159474\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3159474-3159505	32	NZ_CP012491	Escherichia coli strain CFSAN004176 plasmid pCFSAN004176P_03, complete sequence	62997-63028	0	1.0
NZ_CP027452_4	4.17\|3159474\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3159474-3159505	32	MH422554	Escherichia phage P1, complete genome	87194-87225	0	1.0
NZ_CP027452_4	4.17\|3159474\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3159474-3159505	32	NC_050152	Enterobacteria phage P7, complete genome	93995-94026	0	1.0
NZ_CP027452_4	4.17\|3159474\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3159474-3159505	32	MH445380	Escherichia virus P1 isolate transconjugant 2(L-II), complete genome	58645-58676	0	1.0
NZ_CP027452_4	4.17\|3159474\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3159474-3159505	32	NC_031129	Salmonella phage SJ46, complete genome	77363-77394	0	1.0
NZ_CP027452_4	4.17\|3159474\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3159474-3159505	32	MH445381	Escherichia virus P1, complete genome	56870-56901	0	1.0
NZ_CP027452_1	1.1\|173683\|40\|NZ_CP027452\|CRISPRCasFinder	173683-173722	40	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	47951-47990	1	0.975
NZ_CP027452_2	2.1\|675999\|24\|NZ_CP027452\|PILER-CR	675999-676022	24	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	44572-44595	1	0.958
NZ_CP027452_2	2.2\|676046\|25\|NZ_CP027452\|PILER-CR	676046-676070	25	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	44524-44548	1	0.96
NZ_CP027452_4	4.17\|3159474\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3159474-3159505	32	NZ_KP453775	Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence	17440-17471	2	0.938
NZ_CP027452_4	4.17\|3159474\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3159474-3159505	32	NZ_CP017632	Escherichia coli strain SLK172 plasmid pSLK172-1, complete sequence	122310-122341	2	0.938
NZ_CP027452_4	4.17\|3159474\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3159474-3159505	32	NZ_CP030285	Escherichia coli strain E308 plasmid pLKSZ04, complete sequence	6029-6060	2	0.938
NZ_CP027452_4	4.17\|3159474\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3159474-3159505	32	NZ_CP036204	Escherichia coli strain L725 plasmid punnamed2, complete sequence	15121-15152	2	0.938
NZ_CP027452_4	4.17\|3159474\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3159474-3159505	32	MN510446	Escherichia coli strain SvETEC plasmid pSvP1_F, complete sequence	131402-131433	2	0.938
NZ_CP027452_6	6.1\|4222911\|38\|NZ_CP027452\|CRISPRCasFinder	4222911-4222948	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	2	0.947
NZ_CP027452_2	2.2\|676046\|25\|NZ_CP027452\|PILER-CR	676046-676070	25	NZ_CP015341	Lactobacillus brevis strain 100D8 plasmid unnamed3, complete sequence	35661-35685	4	0.84
NZ_CP027452_4	4.1\|3158498\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3158498-3158529	32	NZ_CP022140	Salmonella enterica subsp. salamae serovar 55:k:z39 str. 1315K plasmid unnamed1, complete sequence	27735-27766	6	0.812
NZ_CP027452_4	4.6\|3158803\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3158803-3158834	32	MN694288	Marine virus AFVG_250M340, complete genome	2144-2175	7	0.781
NZ_CP027452_4	4.6\|3158803\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3158803-3158834	32	MN694316	Marine virus AFVG_250M341, complete genome	38824-38855	7	0.781
NZ_CP027452_4	4.6\|3158803\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3158803-3158834	32	MN694631	Marine virus AFVG_250M342, complete genome	38482-38513	7	0.781
NZ_CP027452_3	3.1\|3132342\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3132342-3132373	32	MK448716	Streptococcus phage Javan249, complete genome	37558-37589	8	0.75
NZ_CP027452_3	3.4\|3132525\|32\|NZ_CP027452\|CRISPRCasFinder,CRT	3132525-3132556	32	NZ_LT904880	Salmonella enterica subsp. enterica serovar Typhi strain ty3-193 genome assembly, plasmid: 3	100861-100892	8	0.75
NZ_CP027452_3	3.4\|3132525\|32\|NZ_CP027452\|CRISPRCasFinder,CRT	3132525-3132556	32	NZ_LT904895	Salmonella enterica subsp. enterica serovar Typhi strain ERL12960 genome assembly, plasmid: 2	32455-32486	8	0.75
NZ_CP027452_3	3.4\|3132525\|32\|NZ_CP027452\|CRISPRCasFinder,CRT	3132525-3132556	32	NZ_CP012254	Cronobacter sakazakii strain NCTC 8155 plasmid pCS1, complete sequence	90639-90670	8	0.75
NZ_CP027452_3	3.4\|3132525\|32\|NZ_CP027452\|CRISPRCasFinder,CRT	3132525-3132556	32	NZ_CP029647	Salmonella enterica subsp. enterica serovar Typhi strain 311189_217186 plasmid pHCM2, complete sequence	24048-24079	8	0.75
NZ_CP027452_3	3.4\|3132525\|32\|NZ_CP027452\|CRISPRCasFinder,CRT	3132525-3132556	32	NZ_LT904853	Salmonella enterica subsp. enterica serovar Typhi strain TY585 genome assembly, plasmid: 2	2158-2189	8	0.75
NZ_CP027452_3	3.4\|3132525\|32\|NZ_CP027452\|CRISPRCasFinder,CRT	3132525-3132556	32	NC_003385	Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid pHCM2, complete sequence	69550-69581	8	0.75
NZ_CP027452_3	3.4\|3132525\|32\|NZ_CP027452\|CRISPRCasFinder,CRT	3132525-3132556	32	NZ_CP029859	Salmonella enterica subsp. enterica serovar Typhi strain 343077_285138 plasmid pHCM2, complete sequence	33422-33453	8	0.75
NZ_CP027452_3	3.4\|3132525\|32\|NZ_CP027452\|CRISPRCasFinder,CRT	3132525-3132556	32	NZ_CP029847	Salmonella enterica subsp. enterica serovar Typhi strain 343078_273110 plasmid pHCM2, complete sequence	64890-64921	8	0.75
NZ_CP027452_3	3.4\|3132525\|32\|NZ_CP027452\|CRISPRCasFinder,CRT	3132525-3132556	32	NZ_CP029916	Salmonella enterica subsp. enterica serovar Typhi strain 343076_202113 plasmid pHCM2, complete sequence	3001-3032	8	0.75
NZ_CP027452_3	3.4\|3132525\|32\|NZ_CP027452\|CRISPRCasFinder,CRT	3132525-3132556	32	NZ_CP029893	Salmonella enterica subsp. enterica serovar Typhi strain 343076_252143 plasmid pHCM2, complete sequence	30210-30241	8	0.75
NZ_CP027452_3	3.4\|3132525\|32\|NZ_CP027452\|CRISPRCasFinder,CRT	3132525-3132556	32	NZ_CP029876	Salmonella enterica subsp. enterica serovar Typhi strain 343076_227128 plasmid pHCM2, complete sequence	21803-21834	8	0.75
NZ_CP027452_3	3.4\|3132525\|32\|NZ_CP027452\|CRISPRCasFinder,CRT	3132525-3132556	32	NZ_CP029884	Salmonella enterica subsp. enterica serovar Typhi strain 311189_268186 plasmid pHCM2, complete sequence	5429-5460	8	0.75
NZ_CP027452_3	3.4\|3132525\|32\|NZ_CP027452\|CRISPRCasFinder,CRT	3132525-3132556	32	NZ_CP029961	Salmonella enterica subsp. enterica serovar Typhi strain 343078_251131 plasmid pHCM2, complete sequence	76887-76918	8	0.75
NZ_CP027452_3	3.4\|3132525\|32\|NZ_CP027452\|CRISPRCasFinder,CRT	3132525-3132556	32	NZ_CP029849	Salmonella enterica subsp. enterica serovar Typhi strain 343078_211126 plasmid pHCM2, complete sequence	9632-9663	8	0.75
NZ_CP027452_3	3.4\|3132525\|32\|NZ_CP027452\|CRISPRCasFinder,CRT	3132525-3132556	32	NZ_CP029857	Salmonella enterica subsp. enterica serovar Typhi strain 343077_286126 plasmid pHCM2, complete sequence	17697-17728	8	0.75
NZ_CP027452_3	3.4\|3132525\|32\|NZ_CP027452\|CRISPRCasFinder,CRT	3132525-3132556	32	NZ_CP029929	Salmonella enterica subsp. enterica serovar Typhi strain 311189_216103 plasmid pHCM2, complete sequence	73527-73558	8	0.75
NZ_CP027452_3	3.4\|3132525\|32\|NZ_CP027452\|CRISPRCasFinder,CRT	3132525-3132556	32	NZ_CP029865	Salmonella enterica subsp. enterica serovar Typhi strain 343077_228157 plasmid pHCM2, complete sequence	87633-87664	8	0.75
NZ_CP027452_3	3.4\|3132525\|32\|NZ_CP027452\|CRISPRCasFinder,CRT	3132525-3132556	32	NZ_LT883154	Salmonella enterica subsp. enterica serovar Typhi strain ERL12148 genome assembly, plasmid: 2	32810-32841	8	0.75
NZ_CP027452_3	3.4\|3132525\|32\|NZ_CP027452\|CRISPRCasFinder,CRT	3132525-3132556	32	NZ_CP029905	Salmonella enterica subsp. enterica serovar Typhi strain 311189_231186 plasmid pHCM2, complete sequence	30728-30759	8	0.75
NZ_CP027452_3	3.4\|3132525\|32\|NZ_CP027452\|CRISPRCasFinder,CRT	3132525-3132556	32	NZ_CP029851	Salmonella enterica subsp. enterica serovar Typhi strain 343078_203125 plasmid pHCM2, complete sequence	44207-44238	8	0.75
NZ_CP027452_3	3.4\|3132525\|32\|NZ_CP027452\|CRISPRCasFinder,CRT	3132525-3132556	32	NZ_CP040567	Salmonella enterica subsp. enterica serovar Typhimurium strain SAP17-7299 plasmid pCFSAN059543, complete sequence	17468-17499	8	0.75
NZ_CP027452_3	3.4\|3132525\|32\|NZ_CP027452\|CRISPRCasFinder,CRT	3132525-3132556	32	NZ_CP029889	Salmonella enterica subsp. enterica serovar Typhi strain 343076_294172 plasmid pHCM2, complete sequence	17968-17999	8	0.75
NZ_CP027452_3	3.4\|3132525\|32\|NZ_CP027452\|CRISPRCasFinder,CRT	3132525-3132556	32	NZ_CP029891	Salmonella enterica subsp. enterica serovar Typhi strain 343076_253155 plasmid pHCM2, complete sequence	18575-18606	8	0.75
NZ_CP027452_3	3.4\|3132525\|32\|NZ_CP027452\|CRISPRCasFinder,CRT	3132525-3132556	32	NZ_CP029898	Salmonella enterica subsp. enterica serovar Typhi strain 343077_213147 plasmid pHCM2, complete sequence	21136-21167	8	0.75
NZ_CP027452_3	3.4\|3132525\|32\|NZ_CP027452\|CRISPRCasFinder,CRT	3132525-3132556	32	NZ_CP029951	Salmonella enterica subsp. enterica serovar Typhi strain 311189_205186 plasmid pHCM2, complete sequence	47286-47317	8	0.75
NZ_CP027452_3	3.4\|3132525\|32\|NZ_CP027452\|CRISPRCasFinder,CRT	3132525-3132556	32	NZ_CP029867	Salmonella enterica subsp. enterica serovar Typhi strain 343077_228140 plasmid pHCM2, complete sequence	33258-33289	8	0.75
NZ_CP027452_3	3.4\|3132525\|32\|NZ_CP027452\|CRISPRCasFinder,CRT	3132525-3132556	32	NZ_CP029901	Salmonella enterica subsp. enterica serovar Typhi strain 343076_232188 plasmid pHCM2, complete sequence	32901-32932	8	0.75
NZ_CP027452_3	3.4\|3132525\|32\|NZ_CP027452\|CRISPRCasFinder,CRT	3132525-3132556	32	NZ_CP029921	Salmonella enterica subsp. enterica serovar Typhi strain 311189_282186 plasmid pHCM2, complete sequence	100446-100477	8	0.75
NZ_CP027452_4	4.1\|3158498\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3158498-3158529	32	NZ_KP453775	Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence	70246-70277	8	0.75
NZ_CP027452_4	4.9\|3158986\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3158986-3159017	32	MN961670	Pseudomonas putida strain 420352 plasmid p420352-IMP, complete sequence	335269-335300	8	0.75
NZ_CP027452_4	4.11\|3159108\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3159108-3159139	32	NZ_CP024314	Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence	2299205-2299236	8	0.75
NZ_CP027452_3	3.1\|3132342\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3132342-3132373	32	NZ_CP044347	Escherichia coli strain P225M plasmid pP225M-CTX-M-55, complete sequence	121862-121893	9	0.719
NZ_CP027452_3	3.1\|3132342\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3132342-3132373	32	NZ_CP032533	Bacillus megaterium NCT-2 plasmid pNCT2_5, complete sequence	17401-17432	9	0.719
NZ_CP027452_3	3.5\|3132586\|32\|NZ_CP027452\|CRISPRCasFinder,CRT,PILER-CR	3132586-3132617	32	AP014399	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C110A-MedDCM-OCT-S26-C20, * SEQUENCING IN PROGRESS *, 2 ordered pieces	35411-35442	9	0.719
NZ_CP027452_3	3.5\|3132586\|32\|NZ_CP027452\|CRISPRCasFinder,CRT,PILER-CR	3132586-3132617	32	AP013383	Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-C110A-MedDCM-OCT-S24-C13	29583-29614	9	0.719
NZ_CP027452_3	3.6\|3132647\|32\|NZ_CP027452\|CRISPRCasFinder,CRT,PILER-CR	3132647-3132678	32	NZ_CP021994	Cryobacterium sp. LW097 plasmid unnamed1	33387-33418	9	0.719
NZ_CP027452_4	4.1\|3158498\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3158498-3158529	32	NZ_CP011404	Lactobacillus salivarius str. Ren plasmid pR1, complete sequence	100759-100790	9	0.719
NZ_CP027452_4	4.1\|3158498\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3158498-3158529	32	NZ_CP020859	Lactobacillus salivarius strain ZLS006 plasmid unnamed1, complete sequence	48192-48223	9	0.719
NZ_CP027452_4	4.1\|3158498\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3158498-3158529	32	NZ_CP020859	Lactobacillus salivarius strain ZLS006 plasmid unnamed1, complete sequence	248214-248245	9	0.719
NZ_CP027452_4	4.1\|3158498\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3158498-3158529	32	NZ_CP017108	Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence	140326-140357	9	0.719
NZ_CP027452_4	4.1\|3158498\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3158498-3158529	32	NZ_CP017110	Lactobacillus salivarius strain CICC23174 plasmid pLS_3, complete sequence	20889-20920	9	0.719
NZ_CP027452_4	4.1\|3158498\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3158498-3158529	32	NZ_CP029460	Clostridium novyi strain 150557 plasmid pCN2, complete sequence	45232-45263	9	0.719
NZ_CP027452_4	4.6\|3158803\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3158803-3158834	32	MN694106	Marine virus AFVG_250M510, complete genome	37990-38021	9	0.719
NZ_CP027452_4	4.11\|3159108\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3159108-3159139	32	NZ_CP030830	Neorhizobium sp. NCHU2750 plasmid pNCHU2750c, complete sequence	129035-129066	9	0.719
NZ_CP027452_3	3.1\|3132342\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3132342-3132373	32	NZ_CP045561	Acinetobacter nosocomialis strain AC1530 plasmid pAC1530, complete sequence	141094-141125	10	0.688
NZ_CP027452_3	3.1\|3132342\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3132342-3132373	32	NZ_CP014478	Acinetobacter pittii strain AP_882 plasmid pNDM-AP_882, complete sequence	140150-140181	10	0.688
NZ_CP027452_3	3.7\|3132708\|32\|NZ_CP027452\|CRISPRCasFinder,CRT,PILER-CR	3132708-3132739	32	NZ_CP024940	Paraburkholderia hospita strain mHSR1 plasmid pmHSR1_P, complete sequence	1163456-1163487	10	0.688
NZ_CP027452_4	4.1\|3158498\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3158498-3158529	32	NC_018511	Bacillus thuringiensis HD-789 plasmid pBTHD789-5, complete sequence	60-91	10	0.688
NZ_CP027452_4	4.1\|3158498\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3158498-3158529	32	NC_001446	Bacillus thuringiensis sv israelensis HI4 plasmid pTX14-3, complete sequence	4548-4579	10	0.688
NZ_CP027452_4	4.1\|3158498\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3158498-3158529	32	NZ_CP009345	Bacillus thuringiensis HD1002 plasmid 6, complete sequence	1165-1196	10	0.688
NZ_CP027452_4	4.1\|3158498\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3158498-3158529	32	NZ_CP053657	Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence	105460-105491	10	0.688
NZ_CP027452_4	4.7\|3158864\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3158864-3158895	32	NZ_CP031468	Paraburkholderia caffeinilytica strain CF1 plasmid p1, complete sequence	166221-166252	10	0.688
NZ_CP027452_4	4.7\|3158864\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3158864-3158895	32	NZ_CP014580	Burkholderia sp. OLGA172 plasmid pOLGA1, complete sequence	2849-2880	10	0.688
NZ_CP027452_4	4.15\|3159352\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3159352-3159383	32	NZ_CP041048	Citrobacter sp. CF971 plasmid pBM527-2, complete sequence	72272-72303	11	0.656
NZ_CP027452_4	4.15\|3159352\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3159352-3159383	32	MN783744	Klebsiella oxytoca plasmid pFDL-VIM, complete sequence	83502-83533	11	0.656
NZ_CP027452_4	4.15\|3159352\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3159352-3159383	32	NC_012885	Aeromonas hydrophila plasmid pRA1, complete sequence	49841-49872	11	0.656
NZ_CP027452_4	4.15\|3159352\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3159352-3159383	32	NZ_CP042536	Citrobacter freundii strain E51 plasmid pE51_002, complete sequence	47980-48011	11	0.656
NZ_CP027452_4	4.15\|3159352\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3159352-3159383	32	NZ_CP042479	Citrobacter freundii strain C50 plasmid pC50_001, complete sequence	161018-161049	11	0.656
NZ_CP027452_4	4.15\|3159352\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3159352-3159383	32	NZ_CP034714	Salmonella enterica subsp. enterica serovar Mikawasima strain RSE15 plasmid pRSE15, complete sequence	47375-47406	11	0.656
NZ_CP027452_4	4.15\|3159352\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3159352-3159383	32	NZ_CP012168	Enterobacter hormaechei subsp. steigerwaltii strain 34998 plasmid p34998-239.973kb, complete sequence	79240-79271	11	0.656
NZ_CP027452_4	4.15\|3159352\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3159352-3159383	32	MN783743	Escherichia coli plasmid pGA_VIM, complete sequence	94759-94790	11	0.656
NZ_CP027452_4	4.15\|3159352\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3159352-3159383	32	NZ_CP034084	Klebsiella pneumoniae subsp. pneumoniae strain R210-2 plasmid pR210-2-VIM, complete sequence	36593-36624	11	0.656
NZ_CP027452_4	4.15\|3159352\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3159352-3159383	32	NZ_MH220284	Aeromonas sp. pRIVM0001_VIM-1 plasmid pRIVM0001_VIM-1_171012_B12, complete sequence	35490-35521	11	0.656
NZ_CP027452_4	4.15\|3159352\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3159352-3159383	32	NZ_MG228427	Kluyvera cryocrescens strain BO64W plasmid pKC-BO-N1-VIM, complete sequence	35534-35565	11	0.656
NZ_CP027452_4	4.15\|3159352\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3159352-3159383	32	NZ_MG550958	Escherichia coli strain G3216 plasmid pG3216.2, complete sequence	80224-80255	11	0.656
NZ_CP027452_4	4.15\|3159352\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3159352-3159383	32	NZ_MH325469	Enterobacter hormaechei strain Ec13 plasmid pEc13, complete sequence	152450-152481	11	0.656
NZ_CP027452_4	4.15\|3159352\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3159352-3159383	32	NZ_MH325468	Enterobacter hormaechei strain Ec09 plasmid pEc09, complete sequence	70132-70163	11	0.656
NZ_CP027452_4	4.15\|3159352\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3159352-3159383	32	NZ_MH594478	Citrobacter freundii strain AA593 plasmid pIBAC_Incx3_A/C, complete sequence	60448-60479	11	0.656
NZ_CP027452_4	4.15\|3159352\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3159352-3159383	32	NZ_MH594477	Citrobacter freundii strain AA535 plasmid pIBAC_IncA/C, complete sequence	61205-61236	11	0.656
NZ_CP027452_4	4.15\|3159352\|32\|NZ_CP027452\|PILER-CR,CRISPRCasFinder,CRT	3159352-3159383	32	NZ_MG053108	Citrobacter freundii strain 33587 plasmid pCf587, complete sequence	48598-48629	11	0.656

1. spacer 2.1|675999|24|NZ_CP027452|PILER-CR matches to NC_049946 (Escherichia virus Lambda_4A7 genome assembly, chromosome: 1) position: , mismatch: 0, identity: 1.0

cgcctttacctgatttgggtaaac	CRISPR spacer
cgcctttacctgatttgggtaaac	Protospacer
************************

2. spacer 2.1|675999|24|NZ_CP027452|PILER-CR matches to LR595861 (Escherichia virus Lambda_4C10 genome assembly, chromosome: 1) position: , mismatch: 0, identity: 1.0

cgcctttacctgatttgggtaaac	CRISPR spacer
cgcctttacctgatttgggtaaac	Protospacer
************************

3. spacer 2.2|676046|25|NZ_CP027452|PILER-CR matches to NC_049946 (Escherichia virus Lambda_4A7 genome assembly, chromosome: 1) position: , mismatch: 0, identity: 1.0

tttacctctttcaggtaaactttat	CRISPR spacer
tttacctctttcaggtaaactttat	Protospacer
*************************

4. spacer 2.2|676046|25|NZ_CP027452|PILER-CR matches to LR595861 (Escherichia virus Lambda_4C10 genome assembly, chromosome: 1) position: , mismatch: 0, identity: 1.0

tttacctctttcaggtaaactttat	CRISPR spacer
tttacctctttcaggtaaactttat	Protospacer
*************************

5. spacer 4.17|3159474|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038506 (Escherichia coli strain 28Eco12 plasmid p28Eco12, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

6. spacer 4.17|3159474|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019283 (Escherichia coli strain 13P484A plasmid p13P484A-3, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

7. spacer 4.17|3159474|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to CP042641 (Escherichia coli strain NCYU-24-74 plasmid pNCYU-24-74-3, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

8. spacer 4.17|3159474|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034821 (Salmonella sp. SSDFZ54 plasmid pTB502, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

9. spacer 4.17|3159474|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027443 (Escherichia coli strain 2013C-3252 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

10. spacer 4.17|3159474|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027575 (Escherichia coli strain 2013C-4081 plasmid unnamed2) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

11. spacer 4.17|3159474|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027223 (Escherichia coli strain 2015C-3101 plasmid unnamed2) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

12. spacer 4.17|3159474|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030188 (Salmonella enterica strain SA20094620 plasmid pSA20094620.3, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

13. spacer 4.17|3159474|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027590 (Escherichia coli strain 2014C-3011 plasmid unnamed2) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

14. spacer 4.17|3159474|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039862 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014880 plasmid p16-6773.2, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

15. spacer 4.17|3159474|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033632 (Escherichia coli isolate ECCNB12-2 plasmid pTB-nb1, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

16. spacer 4.17|3159474|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP018798 (Escherichia coli strain E2855 plasmid pE2855-2, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

17. spacer 4.17|3159474|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to CP012494 (Escherichia coli strain CFSAN004177 plasmid pCFSAN004177G_03, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

18. spacer 4.17|3159474|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to CP027320 (Escherichia coli strain 2014C-3084 plasmid unnamed1) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

19. spacer 4.17|3159474|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to NC_013370 (Escherichia coli O111:H- str. 11128 plasmid pO111_2, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

20. spacer 4.17|3159474|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026475 (Escherichia coli strain KBN10P04869 plasmid pKBN10P04869B, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

21. spacer 4.17|3159474|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to MN510445 (Escherichia coli strain JIE250 plasmid pJIE250_3, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

22. spacer 4.17|3159474|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to MN510447 (Escherichia coli strain TZ20_1P plasmid pTZ20_1P, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

23. spacer 4.17|3159474|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012491 (Escherichia coli strain CFSAN004176 plasmid pCFSAN004176P_03, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

24. spacer 4.17|3159474|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to MH422554 (Escherichia phage P1, complete genome) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

25. spacer 4.17|3159474|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to NC_050152 (Enterobacteria phage P7, complete genome) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

26. spacer 4.17|3159474|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to MH445380 (Escherichia virus P1 isolate transconjugant 2(L-II), complete genome) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

27. spacer 4.17|3159474|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to NC_031129 (Salmonella phage SJ46, complete genome) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

28. spacer 4.17|3159474|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to MH445381 (Escherichia virus P1, complete genome) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

29. spacer 1.1|173683|40|NZ_CP027452|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 1, identity: 0.975

gcgctgcgggtcatttttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
***************.************************

30. spacer 2.1|675999|24|NZ_CP027452|PILER-CR matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 1, identity: 0.958

cgcctttacctgatttgggtaaac	CRISPR spacer
tgcctttacctgatttgggtaaac	Protospacer
.***********************

31. spacer 2.2|676046|25|NZ_CP027452|PILER-CR matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 1, identity: 0.96

tttacctctttcaggtaaactttat	CRISPR spacer
tttacctctttaaggtaaactttat	Protospacer
*********** *************

32. spacer 4.17|3159474|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KP453775 (Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence) position: , mismatch: 2, identity: 0.938

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtgaaaacacgttctgaaccgacattcatgt	Protospacer
***.******** *******************

33. spacer 4.17|3159474|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017632 (Escherichia coli strain SLK172 plasmid pSLK172-1, complete sequence) position: , mismatch: 2, identity: 0.938

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtgaaaacacgttctgaaccgacattcatgt	Protospacer
***.******** *******************

34. spacer 4.17|3159474|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030285 (Escherichia coli strain E308 plasmid pLKSZ04, complete sequence) position: , mismatch: 2, identity: 0.938

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctaaaccgtcattcatgt	Protospacer
****************.***** *********

35. spacer 4.17|3159474|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP036204 (Escherichia coli strain L725 plasmid punnamed2, complete sequence) position: , mismatch: 2, identity: 0.938

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctaaaccgtcattcatgt	Protospacer
****************.***** *********

36. spacer 4.17|3159474|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to MN510446 (Escherichia coli strain SvETEC plasmid pSvP1_F, complete sequence) position: , mismatch: 2, identity: 0.938

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacgttatgaaccgacattcatgt	Protospacer
************ * *****************

37. spacer 6.1|4222911|38|NZ_CP027452|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

38. spacer 2.2|676046|25|NZ_CP027452|PILER-CR matches to NZ_CP015341 (Lactobacillus brevis strain 100D8 plasmid unnamed3, complete sequence) position: , mismatch: 4, identity: 0.84

tttacctctttcaggtaaactttat	CRISPR spacer
ggtatctcattcaggtaaactttat	Protospacer
  **.*** ****************

39. spacer 4.1|3158498|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022140 (Salmonella enterica subsp. salamae serovar 55:k:z39 str. 1315K plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

cattgaa-aacattgcctttattttattttttg	CRISPR spacer
-attaaatcacattccctctattttattttttc	Protospacer
 ***.**  ***** ***.*************

40. spacer 4.6|3158803|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to MN694288 (Marine virus AFVG_250M340, complete genome) position: , mismatch: 7, identity: 0.781

acaccccgctatctgcgcggctttacgagata-	CRISPR spacer
ataccctgcaatctgcgcggcttta-gcggcac	Protospacer
*.****.** *************** * *..*

41. spacer 4.6|3158803|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to MN694316 (Marine virus AFVG_250M341, complete genome) position: , mismatch: 7, identity: 0.781

acaccccgctatctgcgcggctttacgagata-	CRISPR spacer
ataccctgcaatctgcgcggcttta-gcggcac	Protospacer
*.****.** *************** * *..*

42. spacer 4.6|3158803|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to MN694631 (Marine virus AFVG_250M342, complete genome) position: , mismatch: 7, identity: 0.781

acaccccgctatctgcgcggctttacgagata-	CRISPR spacer
ataccctgcaatctgcgcggcttta-gcggcac	Protospacer
*.****.** *************** * *..*

43. spacer 3.1|3132342|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to MK448716 (Streptococcus phage Javan249, complete genome) position: , mismatch: 8, identity: 0.75

acgtaacaaaacaacagcaaaatattatcgac	CRISPR spacer
taataacaaaacgacagcaaaagattatagtt	Protospacer
  .*********.********* ***** * .

44. spacer 3.4|3132525|32|NZ_CP027452|CRISPRCasFinder,CRT matches to NZ_LT904880 (Salmonella enterica subsp. enterica serovar Typhi strain ty3-193 genome assembly, plasmid: 3) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

45. spacer 3.4|3132525|32|NZ_CP027452|CRISPRCasFinder,CRT matches to NZ_LT904895 (Salmonella enterica subsp. enterica serovar Typhi strain ERL12960 genome assembly, plasmid: 2) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

46. spacer 3.4|3132525|32|NZ_CP027452|CRISPRCasFinder,CRT matches to NZ_CP012254 (Cronobacter sakazakii strain NCTC 8155 plasmid pCS1, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttatca	Protospacer
******** *****.********  **  .*.

47. spacer 3.4|3132525|32|NZ_CP027452|CRISPRCasFinder,CRT matches to NZ_CP029647 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_217186 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

48. spacer 3.4|3132525|32|NZ_CP027452|CRISPRCasFinder,CRT matches to NZ_LT904853 (Salmonella enterica subsp. enterica serovar Typhi strain TY585 genome assembly, plasmid: 2) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

49. spacer 3.4|3132525|32|NZ_CP027452|CRISPRCasFinder,CRT matches to NC_003385 (Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

50. spacer 3.4|3132525|32|NZ_CP027452|CRISPRCasFinder,CRT matches to NZ_CP029859 (Salmonella enterica subsp. enterica serovar Typhi strain 343077_285138 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

51. spacer 3.4|3132525|32|NZ_CP027452|CRISPRCasFinder,CRT matches to NZ_CP029847 (Salmonella enterica subsp. enterica serovar Typhi strain 343078_273110 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

52. spacer 3.4|3132525|32|NZ_CP027452|CRISPRCasFinder,CRT matches to NZ_CP029916 (Salmonella enterica subsp. enterica serovar Typhi strain 343076_202113 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

53. spacer 3.4|3132525|32|NZ_CP027452|CRISPRCasFinder,CRT matches to NZ_CP029893 (Salmonella enterica subsp. enterica serovar Typhi strain 343076_252143 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

54. spacer 3.4|3132525|32|NZ_CP027452|CRISPRCasFinder,CRT matches to NZ_CP029876 (Salmonella enterica subsp. enterica serovar Typhi strain 343076_227128 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

55. spacer 3.4|3132525|32|NZ_CP027452|CRISPRCasFinder,CRT matches to NZ_CP029884 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_268186 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

56. spacer 3.4|3132525|32|NZ_CP027452|CRISPRCasFinder,CRT matches to NZ_CP029961 (Salmonella enterica subsp. enterica serovar Typhi strain 343078_251131 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

57. spacer 3.4|3132525|32|NZ_CP027452|CRISPRCasFinder,CRT matches to NZ_CP029849 (Salmonella enterica subsp. enterica serovar Typhi strain 343078_211126 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

58. spacer 3.4|3132525|32|NZ_CP027452|CRISPRCasFinder,CRT matches to NZ_CP029857 (Salmonella enterica subsp. enterica serovar Typhi strain 343077_286126 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

59. spacer 3.4|3132525|32|NZ_CP027452|CRISPRCasFinder,CRT matches to NZ_CP029929 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_216103 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

60. spacer 3.4|3132525|32|NZ_CP027452|CRISPRCasFinder,CRT matches to NZ_CP029865 (Salmonella enterica subsp. enterica serovar Typhi strain 343077_228157 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

61. spacer 3.4|3132525|32|NZ_CP027452|CRISPRCasFinder,CRT matches to NZ_LT883154 (Salmonella enterica subsp. enterica serovar Typhi strain ERL12148 genome assembly, plasmid: 2) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

62. spacer 3.4|3132525|32|NZ_CP027452|CRISPRCasFinder,CRT matches to NZ_CP029905 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_231186 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

63. spacer 3.4|3132525|32|NZ_CP027452|CRISPRCasFinder,CRT matches to NZ_CP029851 (Salmonella enterica subsp. enterica serovar Typhi strain 343078_203125 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

64. spacer 3.4|3132525|32|NZ_CP027452|CRISPRCasFinder,CRT matches to NZ_CP040567 (Salmonella enterica subsp. enterica serovar Typhimurium strain SAP17-7299 plasmid pCFSAN059543, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

65. spacer 3.4|3132525|32|NZ_CP027452|CRISPRCasFinder,CRT matches to NZ_CP029889 (Salmonella enterica subsp. enterica serovar Typhi strain 343076_294172 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

66. spacer 3.4|3132525|32|NZ_CP027452|CRISPRCasFinder,CRT matches to NZ_CP029891 (Salmonella enterica subsp. enterica serovar Typhi strain 343076_253155 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

67. spacer 3.4|3132525|32|NZ_CP027452|CRISPRCasFinder,CRT matches to NZ_CP029898 (Salmonella enterica subsp. enterica serovar Typhi strain 343077_213147 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

68. spacer 3.4|3132525|32|NZ_CP027452|CRISPRCasFinder,CRT matches to NZ_CP029951 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_205186 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

69. spacer 3.4|3132525|32|NZ_CP027452|CRISPRCasFinder,CRT matches to NZ_CP029867 (Salmonella enterica subsp. enterica serovar Typhi strain 343077_228140 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

70. spacer 3.4|3132525|32|NZ_CP027452|CRISPRCasFinder,CRT matches to NZ_CP029901 (Salmonella enterica subsp. enterica serovar Typhi strain 343076_232188 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

71. spacer 3.4|3132525|32|NZ_CP027452|CRISPRCasFinder,CRT matches to NZ_CP029921 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_282186 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

72. spacer 4.1|3158498|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KP453775 (Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence) position: , mismatch: 8, identity: 0.75

cattgaaaacattgcctttattttattttttg	CRISPR spacer
tcgctaaaacattggctttatttaatttttta	Protospacer
.  . ********* ******** *******.

73. spacer 4.9|3158986|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to MN961670 (Pseudomonas putida strain 420352 plasmid p420352-IMP, complete sequence) position: , mismatch: 8, identity: 0.75

cgggcgactggggcgggtttgttaatctcatg	CRISPR spacer
ccgaaaaatggggctggtttgttaatctgatc	Protospacer
* *. .* ****** ************* **

74. spacer 4.11|3159108|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024314 (Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence) position: , mismatch: 8, identity: 0.75

gactatcgcggactgctgaaatcaaccggcga	CRISPR spacer
gcgtcgcgcggactgccgaattcaaccggctc	Protospacer
*  *  **********.*** *********

75. spacer 3.1|3132342|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044347 (Escherichia coli strain P225M plasmid pP225M-CTX-M-55, complete sequence) position: , mismatch: 9, identity: 0.719

acgtaacaaaacaacagcaaaatattatcgac	CRISPR spacer
taagaacaaaacaagagcgaaatattatgcat	Protospacer
  . ********** ***.*********  *.

76. spacer 3.1|3132342|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032533 (Bacillus megaterium NCT-2 plasmid pNCT2_5, complete sequence) position: , mismatch: 9, identity: 0.719

acgtaacaaaacaacagcaaaatattatcgac	CRISPR spacer
atgtaacaaaaaaacagtaaaatatggtgaga	Protospacer
*.********* *****.******* .* ..

77. spacer 3.5|3132586|32|NZ_CP027452|CRISPRCasFinder,CRT,PILER-CR matches to AP014399 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C110A-MedDCM-OCT-S26-C20, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces) position: , mismatch: 9, identity: 0.719

ctaggataaattaaaagacaaaattgcagcaa	CRISPR spacer
gtcagataaattaaaagagataattgcaaatt	Protospacer
 * .************** * *******.

78. spacer 3.5|3132586|32|NZ_CP027452|CRISPRCasFinder,CRT,PILER-CR matches to AP013383 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-C110A-MedDCM-OCT-S24-C13) position: , mismatch: 9, identity: 0.719

ctaggataaattaaaagacaaaattgcagcaa	CRISPR spacer
gtcagataaattaaaagagataattgcaaatt	Protospacer
 * .************** * *******.

79. spacer 3.6|3132647|32|NZ_CP027452|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021994 (Cryobacterium sp. LW097 plasmid unnamed1) position: , mismatch: 9, identity: 0.719

gagcgaccagtatcaagatcgacaggttttgc	CRISPR spacer
gagcgaccagcagcaagatcgaccagacctca	Protospacer
**********.* ********** .* ..*

80. spacer 4.1|3158498|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011404 (Lactobacillus salivarius str. Ren plasmid pR1, complete sequence) position: , mismatch: 9, identity: 0.719

cattgaaaacattgcctttattttattttttg	CRISPR spacer
tttaataaacattgccttaattttattattaa	Protospacer
. * . ************ ******** ** .

81. spacer 4.1|3158498|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020859 (Lactobacillus salivarius strain ZLS006 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

cattgaaaacattgcctttattttattttttg	CRISPR spacer
tttaataaacattgccttaattttattattaa	Protospacer
. * . ************ ******** ** .

82. spacer 4.1|3158498|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020859 (Lactobacillus salivarius strain ZLS006 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

cattgaaaacattgcctttattttattttttg	CRISPR spacer
tttaataaacattgccttaattttattattaa	Protospacer
. * . ************ ******** ** .

83. spacer 4.1|3158498|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017108 (Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence) position: , mismatch: 9, identity: 0.719

cattgaaaacattgcctttattttattttttg	CRISPR spacer
tttaataaacattgccttaattttattattaa	Protospacer
. * . ************ ******** ** .

84. spacer 4.1|3158498|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017110 (Lactobacillus salivarius strain CICC23174 plasmid pLS_3, complete sequence) position: , mismatch: 9, identity: 0.719

cattgaaaacattgcctttattttattttttg	CRISPR spacer
tttaataaacattgccttaattttattattaa	Protospacer
. * . ************ ******** ** .

85. spacer 4.1|3158498|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029460 (Clostridium novyi strain 150557 plasmid pCN2, complete sequence) position: , mismatch: 9, identity: 0.719

cattgaaaacattgcctttattttattttttg	CRISPR spacer
aaaaaagaacattgtatttattttatttttaa	Protospacer
 *  .*.*******. ************** .

86. spacer 4.6|3158803|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to MN694106 (Marine virus AFVG_250M510, complete genome) position: , mismatch: 9, identity: 0.719

acaccccgctatctgcgcggctttacgagata	CRISPR spacer
ataccctgcaatctgcgcggctttagcggcgc	Protospacer
*.****.** ***************  .*

87. spacer 4.11|3159108|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030830 (Neorhizobium sp. NCHU2750 plasmid pNCHU2750c, complete sequence) position: , mismatch: 9, identity: 0.719

gactatcgcggactgctgaaatcaaccggcga	CRISPR spacer
gtgaagggcagactgctgaaatcatccggcag	Protospacer
*   *  **.************** *****..

88. spacer 3.1|3132342|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045561 (Acinetobacter nosocomialis strain AC1530 plasmid pAC1530, complete sequence) position: , mismatch: 10, identity: 0.688

acgtaacaaaacaacagcaaaatattatcgac	CRISPR spacer
taataaaaaaacaacagcaaaattttgaaaat	Protospacer
  .*** **************** **.  .*.

89. spacer 3.1|3132342|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014478 (Acinetobacter pittii strain AP_882 plasmid pNDM-AP_882, complete sequence) position: , mismatch: 10, identity: 0.688

acgtaacaaaacaacagcaaaatattatcgac	CRISPR spacer
taataaaaaaacaacagcaaaattttgaaaat	Protospacer
  .*** **************** **.  .*.

90. spacer 3.7|3132708|32|NZ_CP027452|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024940 (Paraburkholderia hospita strain mHSR1 plasmid pmHSR1_P, complete sequence) position: , mismatch: 10, identity: 0.688

atcgatatgtacgttagcgaggggatcacgca	CRISPR spacer
ggcgatatttacgttagcgacgggactgacct	Protospacer
. ****** *********** ****...  *

91. spacer 4.1|3158498|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to NC_018511 (Bacillus thuringiensis HD-789 plasmid pBTHD789-5, complete sequence) position: , mismatch: 10, identity: 0.688

cattgaaaacattgcctttattttattttttg	CRISPR spacer
tcgttcttacatttcttttattttattttttt	Protospacer
.  *    ***** *.***************

92. spacer 4.1|3158498|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to NC_001446 (Bacillus thuringiensis sv israelensis HI4 plasmid pTX14-3, complete sequence) position: , mismatch: 10, identity: 0.688

cattgaaaacattgcctttattttattttttg	CRISPR spacer
tcgttcttacatttcttttattttattttttt	Protospacer
.  *    ***** *.***************

93. spacer 4.1|3158498|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009345 (Bacillus thuringiensis HD1002 plasmid 6, complete sequence) position: , mismatch: 10, identity: 0.688

cattgaaaacattgcctttattttattttttg	CRISPR spacer
tcgttcttacatttcttttattttattttttt	Protospacer
.  *    ***** *.***************

94. spacer 4.1|3158498|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053657 (Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence) position: , mismatch: 10, identity: 0.688

cattgaaaacattgcctttattttattttttg	CRISPR spacer
accttaaaacatttcctttgttttatttagat	Protospacer
  .* ******** *****.********

95. spacer 4.7|3158864|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031468 (Paraburkholderia caffeinilytica strain CF1 plasmid p1, complete sequence) position: , mismatch: 10, identity: 0.688

cgatcggtgaagaggtccgcgaaatactcact	CRISPR spacer
taatcggtgacgacgtccgcgaaatcggagat	Protospacer
..******** ** ***********    . *

96. spacer 4.7|3158864|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014580 (Burkholderia sp. OLGA172 plasmid pOLGA1, complete sequence) position: , mismatch: 10, identity: 0.688

cgatcggtgaagaggtccgcgaaatactcact	CRISPR spacer
taatcggtgacgacgtccgcgaaatcggagat	Protospacer
..******** ** ***********    . *

97. spacer 4.15|3159352|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041048 (Citrobacter sp. CF971 plasmid pBM527-2, complete sequence) position: , mismatch: 11, identity: 0.656

agttgagcgtctaccagttgattcgggatatt	CRISPR spacer
cattgagcgtctaccaggtgatacgtcgccaa	Protospacer
 .*************** **** **  ..

98. spacer 4.15|3159352|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to MN783744 (Klebsiella oxytoca plasmid pFDL-VIM, complete sequence) position: , mismatch: 11, identity: 0.656

agttgagcgtctaccagttgattcgggatatt	CRISPR spacer
cattgagcgtctaccaggtgatacgtcgccaa	Protospacer
 .*************** **** **  ..

99. spacer 4.15|3159352|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to NC_012885 (Aeromonas hydrophila plasmid pRA1, complete sequence) position: , mismatch: 11, identity: 0.656

agttgagcgtctaccagttgattcgggatatt	CRISPR spacer
cattgagcgtctaccaggtgatacgtcgccaa	Protospacer
 .*************** **** **  ..

100. spacer 4.15|3159352|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042536 (Citrobacter freundii strain E51 plasmid pE51_002, complete sequence) position: , mismatch: 11, identity: 0.656

agttgagcgtctaccagttgattcgggatatt	CRISPR spacer
cattgagcgtctaccaggtgatacgtcgccaa	Protospacer
 .*************** **** **  ..

101. spacer 4.15|3159352|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042479 (Citrobacter freundii strain C50 plasmid pC50_001, complete sequence) position: , mismatch: 11, identity: 0.656

agttgagcgtctaccagttgattcgggatatt	CRISPR spacer
cattgagcgtctaccaggtgatacgtcgccaa	Protospacer
 .*************** **** **  ..

102. spacer 4.15|3159352|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034714 (Salmonella enterica subsp. enterica serovar Mikawasima strain RSE15 plasmid pRSE15, complete sequence) position: , mismatch: 11, identity: 0.656

agttgagcgtctaccagttgattcgggatatt	CRISPR spacer
cattgagcgtctaccaggtgatacgtcgccaa	Protospacer
 .*************** **** **  ..

103. spacer 4.15|3159352|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012168 (Enterobacter hormaechei subsp. steigerwaltii strain 34998 plasmid p34998-239.973kb, complete sequence) position: , mismatch: 11, identity: 0.656

agttgagcgtctaccagttgattcgggatatt	CRISPR spacer
cattgagcgtctaccaggtgatacgtcgccaa	Protospacer
 .*************** **** **  ..

104. spacer 4.15|3159352|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to MN783743 (Escherichia coli plasmid pGA_VIM, complete sequence) position: , mismatch: 11, identity: 0.656

agttgagcgtctaccagttgattcgggatatt	CRISPR spacer
cattgagcgtctaccaggtgatacgtcgccaa	Protospacer
 .*************** **** **  ..

105. spacer 4.15|3159352|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034084 (Klebsiella pneumoniae subsp. pneumoniae strain R210-2 plasmid pR210-2-VIM, complete sequence) position: , mismatch: 11, identity: 0.656

agttgagcgtctaccagttgattcgggatatt	CRISPR spacer
cattgagcgtctaccaggtgatacgtcgccaa	Protospacer
 .*************** **** **  ..

106. spacer 4.15|3159352|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH220284 (Aeromonas sp. pRIVM0001_VIM-1 plasmid pRIVM0001_VIM-1_171012_B12, complete sequence) position: , mismatch: 11, identity: 0.656

agttgagcgtctaccagttgattcgggatatt	CRISPR spacer
cattgagcgtctaccaggtgatacgtcgccaa	Protospacer
 .*************** **** **  ..

107. spacer 4.15|3159352|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG228427 (Kluyvera cryocrescens strain BO64W plasmid pKC-BO-N1-VIM, complete sequence) position: , mismatch: 11, identity: 0.656

agttgagcgtctaccagttgattcgggatatt	CRISPR spacer
cattgagcgtctaccaggtgatacgtcgccaa	Protospacer
 .*************** **** **  ..

108. spacer 4.15|3159352|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG550958 (Escherichia coli strain G3216 plasmid pG3216.2, complete sequence) position: , mismatch: 11, identity: 0.656

agttgagcgtctaccagttgattcgggatatt	CRISPR spacer
cattgagcgtctaccaggtgatacgtcgccaa	Protospacer
 .*************** **** **  ..

109. spacer 4.15|3159352|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH325469 (Enterobacter hormaechei strain Ec13 plasmid pEc13, complete sequence) position: , mismatch: 11, identity: 0.656

agttgagcgtctaccagttgattcgggatatt	CRISPR spacer
cattgagcgtctaccaggtgatacgtcgccaa	Protospacer
 .*************** **** **  ..

110. spacer 4.15|3159352|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH325468 (Enterobacter hormaechei strain Ec09 plasmid pEc09, complete sequence) position: , mismatch: 11, identity: 0.656

agttgagcgtctaccagttgattcgggatatt	CRISPR spacer
cattgagcgtctaccaggtgatacgtcgccaa	Protospacer
 .*************** **** **  ..

111. spacer 4.15|3159352|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH594478 (Citrobacter freundii strain AA593 plasmid pIBAC_Incx3_A/C, complete sequence) position: , mismatch: 11, identity: 0.656

agttgagcgtctaccagttgattcgggatatt	CRISPR spacer
cattgagcgtctaccaggtgatacgtcgccaa	Protospacer
 .*************** **** **  ..

112. spacer 4.15|3159352|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH594477 (Citrobacter freundii strain AA535 plasmid pIBAC_IncA/C, complete sequence) position: , mismatch: 11, identity: 0.656

agttgagcgtctaccagttgattcgggatatt	CRISPR spacer
cattgagcgtctaccaggtgatacgtcgccaa	Protospacer
 .*************** **** **  ..

113. spacer 4.15|3159352|32|NZ_CP027452|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG053108 (Citrobacter freundii strain 33587 plasmid pCf587, complete sequence) position: , mismatch: 11, identity: 0.656

agttgagcgtctaccagttgattcgggatatt	CRISPR spacer
cattgagcgtctaccaggtgatacgtcgccaa	Protospacer
 .*************** **** **  ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1466 : 51956

Shigella_phage(48.78%)

terminase,integrase,holin,tRNA,protease,head,tail,plate,portal,capsid

attL 11240:11256|attR 54294:54310

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071556291.1\|1466_1658_-	recombinase family protein	A0A1S6L009	Salmonella_phage	1.9e-14	83.3
WP_106889348.1\|1688_2186_+\|tail	tail fiber protein	Q9MCR6	Enterobacteria_phage	7.4e-55	68.3
WP_052920590.1\|2185_2794_+\|tail	tail fiber assembly protein	M1SV83	Escherichia_phage	4.9e-93	84.9
WP_071556292.1\|2759_2963_-	hypothetical protein	NA	NA	NA	NA
WP_000383560.1\|3863_4448_-	YmfQ family protein	O22003	Shigella_phage	7.8e-112	98.5
WP_158708411.1\|5482_5908_-\|tail	phage tail protein	U5P0R9	Shigella_phage	2.0e-80	99.3
WP_000643721.1\|5907_6456_-\|plate	phage baseplate assembly protein	U5P081	Shigella_phage	3.6e-95	96.7
WP_000999527.1\|6455_7535_-\|plate	baseplate protein	U5P0H6	Shigella_phage	6.9e-207	99.7
WP_001469317.1\|7531_8860_-	hypothetical protein	Q8SBG8	Shigella_phage	2.7e-245	98.6
WP_052920592.1\|8920_10756_-\|tail	phage tail tape measure protein	S5FM63	Shigella_phage	3.6e-304	98.5
WP_000661054.1\|10897_11167_-\|tail	phage tail assembly protein	M1FPE4	Enterobacteria_phage	3.5e-43	100.0
WP_000090993.1\|11166_11523_-	hypothetical protein	U5P076	Shigella_phage	1.2e-62	99.2
11240:11256	attL	NA	NA	NA	NA
WP_000155713.1\|11522_13019_-\|tail	phage tail protein	M1FN90	Enterobacteria_phage	4.5e-273	99.0
WP_000497751.1\|13002_13173_-	DUF2635 domain-containing protein	Q8SBH3	Shigella_phage	9.3e-26	100.0
WP_000779279.1\|13181_13742_-	hypothetical protein	M1FQV7	Enterobacteria_phage	2.3e-105	99.5
WP_000235781.1\|13738_14245_-	hypothetical protein	M1FPE2	Enterobacteria_phage	6.5e-91	99.4
WP_000702406.1\|14219_14630_-\|head	phage head closure protein	M1FJ87	Enterobacteria_phage	7.7e-74	98.5
WP_000927711.1\|14626_14950_-\|head,tail	phage gp6-like head-tail connector protein	U5P072	Shigella_phage	1.1e-56	99.1
WP_000601358.1\|14952_15153_-	hypothetical protein	S5FNU1	Shigella_phage	1.0e-26	98.5
WP_001603263.1\|15201_16407_-\|capsid	phage major capsid protein	U5P0G9	Shigella_phage	2.7e-223	99.3
WP_001603264.1\|16421_17072_-\|head,protease	HK97 family phage prohead protease	U5P4H2	Shigella_phage	2.1e-118	99.1
WP_000466255.1\|17049_18291_-\|portal	phage portal protein	U5P411	Shigella_phage	2.0e-242	99.8
WP_000605606.1\|18290_18473_-	hypothetical protein	S5FXQ9	Shigella_phage	1.7e-25	100.0
WP_122993597.1\|18484_19981_-\|terminase	terminase large subunit	A0A1C9IIA1	Salmonella_phage	4.3e-300	99.8
WP_000929175.1\|20214_20709_-\|terminase	phage terminase small subunit P27 family	U5P067	Shigella_phage	3.9e-88	99.4
WP_052920593.1\|20833_21184_-	HNH endonuclease	M1FQV2	Enterobacteria_phage	8.0e-64	96.6
WP_001089762.1\|21334_21670_+	hypothetical protein	NA	NA	NA	NA
WP_000613841.1\|21770_22340_+	hypothetical protein	NA	NA	NA	NA
WP_001434542.1\|22515_22896_-	DUF2570 domain-containing protein	U5P0U9	Shigella_phage	2.6e-52	87.2
WP_106889350.1\|22879_23356_-	glycoside hydrolase family protein	S5FV07	Shigella_phage	5.4e-87	96.8
WP_042095380.1\|23359_23686_-\|holin	phage holin, lambda family	U5P0K7	Shigella_phage	7.5e-56	98.1
WP_052920595.1\|24003_27156_+	NACHT domain-containing protein	NA	NA	NA	NA
WP_052920596.1\|27258_27438_-	hypothetical protein	NA	NA	NA	NA
WP_033866693.1\|27669_28014_-	antitermination protein	A0A0P0ZCW0	Stx2-converting_phage	1.4e-57	95.4
WP_064758401.1\|28031_29021_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	2.3e-193	98.8
WP_052920598.1\|29028_29826_-	KilA-N domain-containing protein	A0A0P0ZCS0	Stx2-converting_phage	3.2e-148	98.9
WP_000210154.1\|30254_30581_-	LexA family transcriptional regulator	A0A0N7KZF7	Stx2-converting_phage	2.7e-53	99.1
WP_001341555.1\|30577_31231_-	phage N-6-adenine-methyltransferase	A5LH72	Enterobacteria_phage	3.3e-127	99.1
WP_072130381.1\|31230_31725_-	PerC family transcriptional regulator	A0A0P0ZCF0	Stx2-converting_phage	8.1e-86	98.1
WP_001250269.1\|32652_32832_-	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	7.8e-15	68.5
WP_052920601.1\|33007_33565_-	protein YmfL	S5FXP0	Shigella_phage	3.3e-96	95.7
WP_000649480.1\|33608_33809_-	transcriptional regulator	U5P445	Shigella_phage	1.9e-30	98.5
WP_001005353.1\|34750_35059_+	hypothetical protein	I6PDF6	Cronobacter_phage	3.8e-09	80.0
WP_072130382.1\|34996_35338_-	hypothetical protein	NA	NA	NA	NA
WP_136800367.1\|35454_35766_+	hypothetical protein	NA	NA	NA	NA
WP_000939945.1\|35802_36048_+	excisionase-like protein from lambdoid prophage 14	NA	NA	NA	NA
WP_052920602.1\|36028_37156_+\|integrase	tyrosine-type recombinase/integrase	O21925	Phage_21	4.2e-122	61.2
WP_052920603.1\|37402_38572_+	hypothetical protein	NA	NA	NA	NA
WP_052920604.1\|38744_41423_-	AAA family ATPase	NA	NA	NA	NA
WP_000444484.1\|41753_43004_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.9e-22	96.3
WP_001248691.1\|43175_43829_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_000476093.1\|43838_44300_+	phosphatase NudJ	NA	NA	NA	NA
WP_001317772.1\|44353_45460_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_001317771.1\|45495_46137_+	high frequency lysogenization protein HflD	NA	NA	NA	NA
WP_000423742.1\|46140_47511_+	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	1.2e-107	44.9
WP_001265481.1\|47679_48351_+	two-component system response regulator PhoP	NA	NA	NA	NA
WP_000735412.1\|48350_49811_+	two-component system sensor histidine kinase PhoQ	NA	NA	NA	NA
WP_000133413.1\|50364_50646_-	hypothetical protein	NA	NA	NA	NA
WP_016240520.1\|50939_51380_-	hypothetical protein	NA	NA	NA	NA
WP_106889351.1\|51542_51956_-\|head,tail	phage head-tail connector protein	NA	NA	NA	NA
54294:54310	attR	NA	NA	NA	NA

DBSCAN-SWA_2

632407 : 686933

Enterobacteria_phage(53.33%)

terminase,integrase,tRNA,protease,head,tail,portal,capsid,lysis

attL 663466:663481|attR 691510:691525

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_106889373.1\|632407_633361_+\|protease	omptin family outer membrane protease OmpT	NA	NA	NA	NA
WP_158708403.1\|633604_634261_+	methyltransferase	NA	NA	NA	NA
WP_001695517.1\|634673_634973_+\|integrase	tyrosine-type recombinase/integrase	B9UDL9	Salmonella_phage	5.0e-30	82.4
WP_001695516.1\|634992_635301_+\|integrase	tyrosine-type recombinase/integrase	Q76H30	Enterobacteria_phage	1.8e-38	69.3
WP_001201825.1\|635775_636729_+\|protease	omptin family outer membrane protease OmpT	NA	NA	NA	NA
WP_001226378.1\|636915_638400_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_000937502.1\|638583_638889_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	2.8e-12	76.5
WP_000239874.1\|638945_639614_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_120795384.1\|639979_640093_+	Rac prophage; protein YnaM	A0A1C9IHU6	Salmonella_phage	8.4e-07	80.6
WP_000836768.1\|640161_640395_+	cold shock protein YdfK	A0A192Y6D5	Salmonella_phage	1.1e-32	88.3
WP_000086514.1\|640711_641302_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	7.3e-25	38.8
WP_000885616.1\|641399_641975_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	6.5e-103	95.3
WP_000279163.1\|641974_644935_-	hypothetical protein	A0A0K2FIZ6	Escherichia_phage	4.0e-55	53.7
WP_106889374.1\|645656_649070_-	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	97.3
WP_000090891.1\|649130_649763_-\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	2.2e-96	99.5
WP_106889375.1\|649699_650443_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	2.5e-147	96.8
WP_016230622.1\|650448_651147_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	6.2e-132	98.7
WP_000847355.1\|651146_651476_-\|tail	phage tail protein	A0A2R9YJM0	Escherichia_phage	1.5e-56	96.3
WP_106889376.1\|651472_654034_-\|tail	phage tail tape measure protein	A0A0K2FI43	Enterobacteria_phage	0.0e+00	91.4
WP_000459458.1\|654026_654461_-\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	1.5e-64	99.2
WP_033805293.1\|654442_654865_-\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	1.9e-72	99.3
WP_053276106.1\|654880_655621_-\|tail	phage tail protein	A0A2I6TC77	Escherichia_phage	1.5e-131	98.4
WP_000683105.1\|655628_656024_-\|tail	tail protein	A0A0K2FIF4	Enterobacteria_phage	1.0e-70	100.0
WP_000975051.1\|656020_656599_-\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	3.5e-80	97.9
WP_000753019.1\|656610_656964_-\|tail	tail attachment protein	A0A2R9YJJ5	Escherichia_phage	2.6e-62	98.3
WP_000158868.1\|656975_657371_-	DNA-packaging protein FI	A0A2R9YJP4	Escherichia_phage	5.7e-58	95.5
WP_000063218.1\|657412_658438_-\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.4e-188	97.7
WP_001513196.1\|658493_658826_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	3.8e-55	99.1
WP_001357873.1\|658835_660155_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	1.0e-231	97.9
WP_001369921.1\|660135_661737_-\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	1.9e-309	98.9
WP_000198149.1\|661733_661940_-\|head,tail	Lambda prophage-derived head-to-tail joining protein W	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
WP_001585441.1\|661936_663862_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.4
663466:663481	attL	NA	NA	NA	NA
WP_000453611.1\|663836_664382_-	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	2.3e-94	98.3
WP_001415975.1\|664770_664965_+	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	4.3e-27	96.9
WP_000738421.1\|665324_665618_+	increased serum survival lipoprotein Iss	K7PL54	Enterobacteria_phage	5.9e-44	90.7
WP_001228695.1\|665708_665891_-\|lysis	prophage lysis lipoprotein RzoD	K7PHU6	Enterobacteria_phage	2.9e-17	98.3
WP_001135277.1\|666107_666605_-	lysozyme	M1FJA0	Enterobacteria_phage	5.4e-90	97.0
WP_000839596.1\|666604_666820_-\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	9.0e-34	100.0
WP_000737266.1\|667408_668506_+	porin	Q1MVN1	Enterobacteria_phage	2.2e-155	76.5
WP_001204791.1\|668695_669079_-	antitermination protein QuuD	A0A088CD47	Shigella_phage	4.4e-55	83.3
WP_000971068.1\|669164_669305_-	YlcG family protein	K7PHH3	Enterobacteria_phage	5.5e-08	67.4
WP_001099700.1\|669301_669664_-	crossover junction endodeoxyribonuclease RusA	K7PM48	Enterobacteria_phage	7.3e-60	96.5
WP_000774488.1\|669660_669951_-	DUF1364 domain-containing protein	K7PGZ6	Enterobacteria_phage	4.3e-47	94.8
WP_000224919.1\|669943_670114_-	NinE family protein	NA	NA	NA	NA
WP_001053033.1\|670113_670569_-	DNA base-flipping protein YbcN	I6PD71	Cronobacter_phage	3.7e-61	67.5
WP_001309322.1\|670565_670667_-	hypothetical protein	NA	NA	NA	NA
WP_000068668.1\|670765_671695_-	hypothetical protein	A0A1R3Y6Z6	Salmonella_virus	3.0e-57	40.0
WP_106889377.1\|671899_672217_-	hypothetical protein	NA	NA	NA	NA
WP_106889378.1\|672328_673855_-	recombinase family protein	Q3HQV4	Burkholderia_phage	6.1e-31	27.7
WP_032139864.1\|673912_674020_-	hypothetical protein	NA	NA	NA	NA
WP_001070442.1\|674111_674444_-	SMR family multidrug efflux protein EmrE	NA	NA	NA	NA
WP_000145915.1\|674511_674814_-	protein ren	A0A0N6WES4	Escherichia_phage	1.1e-42	95.7
WP_106889379.1\|674810_675512_-	Replication protein P	K7P6G2	Enterobacteria_phage	2.9e-129	99.1
WP_012565044.1\|675508_676438_-	replication protein	A0A0M5M7Y1	Salmonella_phage	1.2e-111	64.4
WP_001182893.1\|676524_677064_-	hypothetical protein	K7PJT7	Enterobacteria_phage	2.2e-60	66.5
WP_106889380.1\|677133_677364_-	helix-turn-helix domain-containing protein	A0A2H4FNF3	Salmonella_phage	2.1e-20	66.7
WP_000858975.1\|677468_678158_+	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	2.8e-92	75.0
WP_023148105.1\|678669_678960_+	hypothetical protein	K7P6H3	Enterobacteria_phage	5.0e-27	85.1
WP_000995453.1\|679035_679332_+	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	1.8e-48	98.0
WP_000100847.1\|679337_680123_+	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	6.3e-149	100.0
WP_106889382.1\|680119_680800_+	YqaJ viral recombinase family protein	B6DZ61	Enterobacteria_phage	8.7e-131	97.8
WP_000149544.1\|680796_680979_+	DUF1317 domain-containing protein	A0A1U8QQC1	Enterobacteria_phage	6.9e-27	96.7
WP_000548537.1\|680951_681143_+	DUF1382 family protein	A0A0P0ZC67	Stx2-converting_phage	2.1e-26	98.4
WP_001443983.1\|681153_681435_+	hypothetical protein	A0A0P0ZE02	Stx2-converting_phage	7.2e-47	98.9
WP_000763385.1\|681533_681752_+	TraR/DksA family transcriptional regulator	M1FQT7	Enterobacteria_phage	7.5e-36	100.0
WP_000488407.1\|681799_682078_+	DUF4222 domain-containing protein	M1FPC8	Enterobacteria_phage	4.9e-48	97.8
WP_000446905.1\|682049_682421_+	helix-turn-helix domain-containing protein	M1FJ59	Enterobacteria_phage	2.1e-46	81.0
WP_000051902.1\|682276_683440_+\|integrase	site-specific integrase	A0A088CD23	Shigella_phage	3.0e-200	86.6
WP_000729156.1\|683802_684669_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.0e-30	37.5
WP_000190288.1\|684670_684883_+	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_001143512.1\|684990_685512_+	metal-dependent hydrolase	NA	NA	NA	NA
WP_000912345.1\|685547_686933_-\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.9e-45	34.8
691510:691525	attR	NA	NA	NA	NA

DBSCAN-SWA_3

965776 : 1008198

Clostridioides_phage(33.33%)

transposase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001561476.1\|965776_966274_-\|transposase	REP-associated tyrosine transposase RayT	NA	NA	NA	NA
WP_123009815.1\|966450_967224_-	C40 family peptidase	A0A1V0DZX6	Clostridioides_phage	1.6e-19	37.7
WP_000729706.1\|967409_967670_+	type II toxin-antitoxin system antitoxin DinJ	NA	NA	NA	NA
WP_042020808.1\|967893_968076_+	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	NA	NA	NA	NA
WP_001225679.1\|968231_968972_+	murein L,D-transpeptidase	NA	NA	NA	NA
WP_000333380.1\|968942_969710_-	class II glutamine amidotransferase	NA	NA	NA	NA
WP_000284050.1\|969825_970404_-	D-sedoheptulose 7-phosphate isomerase	A0A067XQR2	Caulobacter_phage	1.1e-14	32.0
WP_000973081.1\|970643_973088_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_000532690.1\|973130_973604_-	C-lysozyme inhibitor	NA	NA	NA	NA
WP_001561474.1\|973757_974528_+	2-oxoglutaramate amidase	NA	NA	NA	NA
WP_062864337.1\|974597_975734_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_032170719.1\|976122_976665_-	hypothetical protein	NA	NA	NA	NA
WP_042106401.1\|980791_981235_-	DcrB-related protein	NA	NA	NA	NA
WP_106889392.1\|981258_983472_-	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_052431198.1\|983496_983868_-	hypothetical protein	NA	NA	NA	NA
WP_042106403.1\|983864_984599_-	hypothetical protein	NA	NA	NA	NA
WP_042106404.1\|984751_985552_-	DUF2094 domain-containing protein	NA	NA	NA	NA
WP_042106405.1\|985740_986217_-	hypothetical protein	NA	NA	NA	NA
WP_042106407.1\|986213_986909_-	hypothetical protein	NA	NA	NA	NA
WP_106889393.1\|987155_991022_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_042106309.1\|991349_991793_-	hypothetical protein	NA	NA	NA	NA
WP_042106307.1\|991794_992163_-	DUF2778 domain-containing protein	NA	NA	NA	NA
WP_052920659.1\|992254_993571_-	type VI secretion system protein TssL	NA	NA	NA	NA
WP_001316112.1\|993567_994911_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_001045933.1\|994914_995448_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_000312804.1\|995515_996001_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_042102253.1\|996645_997053_-	BPSL0067 family protein	NA	NA	NA	NA
WP_088144551.1\|997103_998600_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_000996814.1\|998642_999188_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_042102251.1\|999249_999540_-	hypothetical protein	NA	NA	NA	NA
WP_042102250.1\|999542_1000106_-	hypothetical protein	NA	NA	NA	NA
WP_042102248.1\|1000118_1002752_-	type VI secretion system ATPase TssH	A0A2I7SAX5	Vibrio_phage	1.4e-80	33.0
WP_000804008.1\|1003084_1003999_+	type VI secretion system-associated protein TagK	NA	NA	NA	NA
WP_034174031.1\|1003985_1004816_+	impE family protein	NA	NA	NA	NA
WP_001276638.1\|1004812_1005307_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_042102246.1\|1005322_1007206_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_052920658.1\|1007202_1008198_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA

DBSCAN-SWA_4

1616516 : 1669638

Escherichia_phage(52.63%)

terminase,integrase,tRNA,holin,protease,portal,tail,lysis

attL 1615071:1615086|attR 1663059:1663074

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1615071:1615086	attL	NA	NA	NA	NA
WP_000918363.1\|1616516_1617932_-	replicative DNA helicase	O80281	Escherichia_phage	4.8e-200	78.3
WP_000235522.1\|1618014_1618998_+	quinone oxidoreductase	NA	NA	NA	NA
WP_000891406.1\|1619163_1619406_-	envelope stress response protein PspG	NA	NA	NA	NA
WP_001514813.1\|1619539_1620577_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_000332263.1\|1620665_1621763_+\|integrase	site-specific integrase	S5MDN5	Escherichia_phage	5.0e-213	100.0
WP_106889410.1\|1621824_1622073_+	DinI family protein	S5MQI1	Escherichia_phage	1.2e-37	97.6
WP_033802776.1\|1622343_1623015_-	DUF4376 domain-containing protein	S5MBX6	Escherichia_phage	5.1e-107	84.3
WP_106889411.1\|1623083_1624199_-\|tail	phage tail protein	S5MDN9	Escherichia_phage	1.7e-54	98.2
WP_000078855.1\|1624343_1624484_-	Hok/Gef family protein	S5M7Q0	Escherichia_phage	8.5e-17	93.5
WP_106889412.1\|1624682_1628369_-	DUF1983 domain-containing protein	S5MW25	Escherichia_phage	0.0e+00	88.0
WP_072121435.1\|1629283_1629916_-\|tail	tail assembly protein	Q9EYE5	Enterobacteria_phage	4.3e-100	90.5
WP_044808579.1\|1629861_1630605_-\|tail	phage tail protein	S5MQI8	Escherichia_phage	5.9e-149	98.0
WP_044191034.1\|1630615_1631314_-\|tail	phage minor tail protein L	S5M7Q4	Escherichia_phage	1.8e-131	97.8
WP_000847279.1\|1631313_1631643_-\|tail	phage tail protein	S5MW28	Escherichia_phage	5.6e-59	100.0
WP_033811966.1\|1631639_1634273_-\|tail	phage tail tape measure protein	S5MBY3	Escherichia_phage	0.0e+00	84.5
WP_024177471.1\|1634262_1634667_-\|tail	phage tail assembly protein T	S5MDP5	Escherichia_phage	1.2e-42	78.4
WP_000479078.1\|1634693_1635125_-\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	1.5e-40	65.0
WP_000235129.1\|1635144_1635894_-\|tail	phage tail protein	S5M7Q5	Escherichia_phage	2.1e-130	94.4
WP_000682716.1\|1635901_1636300_-\|tail	tail protein	Q9EYD7	Enterobacteria_phage	5.9e-71	100.0
WP_000974963.1\|1636312_1636936_-	hypothetical protein	S5MBY4	Escherichia_phage	1.9e-100	99.5
WP_001281350.1\|1636938_1637220_-	DNA breaking-rejoining protein	Q8VNN4	Enterobacteria_phage	3.9e-45	97.8
WP_000414249.1\|1637212_1637539_-	DUF2190 family protein	S5MQJ5	Escherichia_phage	2.3e-49	99.1
WP_001114424.1\|1637626_1639651_-\|protease	Clp protease ClpP	S5M7Q8	Escherichia_phage	0.0e+00	99.8
WP_106889413.1\|1639595_1641098_-\|portal	phage portal protein	Q9EYD2	Enterobacteria_phage	5.9e-289	99.6
WP_000102415.1\|1641097_1641310_-	hypothetical protein	S5MBY8	Escherichia_phage	3.0e-29	98.6
WP_001077608.1\|1641306_1643430_-\|terminase	phage terminase large subunit family protein	S5MDQ1	Escherichia_phage	0.0e+00	99.0
WP_000373398.1\|1643426_1643903_-	DUF1441 family protein	Q8VNN8	Enterobacteria_phage	1.8e-82	98.7
WP_001255340.1\|1644315_1644783_-\|lysis	lysis protein	Q9EYC9	Enterobacteria_phage	4.4e-65	87.2
WP_000992040.1\|1644779_1645313_-	lysozyme	A0A2R2Z343	Escherichia_phage	2.0e-98	94.9
WP_001063217.1\|1645438_1645759_+	hypothetical protein	NA	NA	NA	NA
WP_106889572.1\|1645738_1646413_-	hypothetical protein	Q08JA0	Stx2-converting_phage	8.8e-59	76.4
WP_000284506.1\|1646416_1646632_-\|holin	holin	Q9ZWW2	Enterobacteria_phage	6.9e-34	100.0
WP_001290208.1\|1646709_1646955_-	DUF826 domain-containing protein	A0A088CE63	Shigella_phage	8.5e-20	100.0
WP_000142780.1\|1646995_1647175_-	DUF1378 family protein	A0A2R2Z345	Escherichia_phage	5.4e-24	93.2
WP_000142974.1\|1647310_1649257_-	DUF1737 domain-containing protein	S5MDQ7	Escherichia_phage	0.0e+00	98.6
WP_000738072.1\|1649769_1650039_-	Shiga toxin Stx2a subunit B	Q6DWN4	Enterobacteria_phage	1.2e-43	100.0
WP_001365678.1\|1650050_1651010_-	Shiga toxin Stx2a subunit A	A0A0P0ZDQ7	Stx2-converting_phage	3.6e-175	99.7
WP_000483502.1\|1651392_1652451_-	site-specific DNA-methyltransferase	S5MDR0	Escherichia_phage	2.0e-206	98.9
WP_000917735.1\|1652602_1652800_-	hypothetical protein	S5MQK8	Escherichia_phage	1.8e-28	98.5
WP_001204806.1\|1653015_1653396_-	antitermination protein Q	S5M7R9	Escherichia_phage	4.9e-67	100.0
WP_001202275.1\|1653413_1654403_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	4.7e-194	98.8
WP_001061444.1\|1654410_1655220_-	KilA-N domain-containing protein	A0A291AWU7	Escherichia_phage	1.8e-151	100.0
WP_000767113.1\|1655239_1655629_-	RusA family crossover junction endodeoxyribonuclease	A0A0P0ZD39	Stx2-converting_phage	7.1e-69	100.0
WP_000210167.1\|1655625_1655952_-	LexA family transcriptional regulator	S5FXP5	Shigella_phage	2.7e-53	99.1
WP_106889414.1\|1655948_1656602_-	phage N-6-adenine-methyltransferase	A0A0P0ZCC0	Stx2-converting_phage	1.6e-126	99.5
WP_000061520.1\|1656696_1657515_-	helix-turn-helix domain-containing protein	A0A291AWW0	Escherichia_phage	6.8e-122	98.9
WP_000620696.1\|1657511_1657736_-	hypothetical protein	A5LH70	Enterobacteria_phage	5.7e-39	100.0
WP_077166608.1\|1657732_1658896_-	peptidase	A0A0P0ZE80	Stx2-converting_phage	1.4e-176	84.0
WP_000515854.1\|1658892_1659444_-	hypothetical protein	A0A0P0ZE62	Stx2-converting_phage	2.9e-100	99.5
WP_001191670.1\|1659436_1659697_-	helix-turn-helix transcriptional regulator	A0A0P0ZCZ7	Stx2-converting_phage	1.6e-40	100.0
WP_001020631.1\|1659794_1660487_+	helix-turn-helix transcriptional regulator	S5FUZ3	Shigella_phage	1.4e-120	95.7
WP_000135680.1\|1661188_1661551_+	hypothetical protein	Q8SBF8	Shigella_phage	8.6e-61	100.0
WP_106889415.1\|1661616_1662441_+	DUF2303 family protein	U5P439	Shigella_phage	6.6e-149	99.3
WP_000008232.1\|1662568_1663105_+	5'-deoxynucleotidase	S5MW55	Escherichia_phage	7.4e-101	100.0
1663059:1663074	attR	NA	NA	NA	NA
WP_001242725.1\|1663095_1663458_+	hypothetical protein	K7PH61	Enterobacteria_phage	3.4e-65	97.4
WP_000206746.1\|1663457_1664267_+	hypothetical protein	Q8HAA7	Salmonella_phage	9.5e-76	61.4
WP_001061343.1\|1664266_1664839_+	3'-5' exoribonuclease	K7PLW7	Enterobacteria_phage	3.7e-106	96.8
WP_001093911.1\|1664875_1665148_+	hypothetical protein	S5MQM5	Escherichia_phage	7.2e-44	100.0
WP_000089360.1\|1665181_1665730_-	hypothetical protein	S5M7T3	Escherichia_phage	1.1e-83	93.4
WP_000287252.1\|1665752_1666226_-	SocA family protein	K4NZT7	Burkholderia_phage	2.4e-18	31.8
WP_000416264.1\|1666749_1667265_+	zinc uptake transcriptional repressor Zur	NA	NA	NA	NA
WP_001296638.1\|1667306_1667516_-	CsbD family protein	NA	NA	NA	NA
WP_001318177.1\|1667631_1668957_-	MATE family efflux transporter DinF	NA	NA	NA	NA
WP_000646078.1\|1669029_1669638_-	repressor LexA	Q9G0C2	Lactococcus_phage	1.0e-13	38.0

DBSCAN-SWA_5

2148368 : 2161432

Morganella_phage(30.0%)

holin,integrase

attL 2138592:2138604|attR 2161824:2161836

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2138592:2138604	attL	NA	NA	NA	NA
WP_000246959.1\|2148368_2149790_-	DNA transfer protein	B6SCW4	Bacteriophage	5.7e-124	53.2
WP_000909177.1\|2149789_2150467_-	hypothetical protein	Q2A0B2	Sodalis_phage	7.0e-56	71.6
WP_000420674.1\|2150460_2150922_-	DUF2824 family protein	Q2A0B3	Sodalis_phage	2.9e-61	72.2
WP_001244106.1\|2151683_2154440_-	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	1.8e-299	57.3
WP_001208876.1\|2154426_2154798_-	hypothetical protein	NA	NA	NA	NA
WP_000628966.1\|2154790_2155132_-	hypothetical protein	A0A1B5FPL8	Escherichia_phage	2.5e-33	61.5
WP_001058740.1\|2155142_2155745_-	hypothetical protein	A0A286S1S7	Klebsiella_phage	2.6e-25	36.3
WP_000181940.1\|2155737_2155959_-	hypothetical protein	NA	NA	NA	NA
WP_106889430.1\|2155955_2156219_-\|holin	nicotinic acetylcholine receptor subunit beta	NA	NA	NA	NA
WP_106889431.1\|2156215_2156410_-	hypothetical protein	NA	NA	NA	NA
WP_106889432.1\|2156402_2157470_-	ash family protein	A0A1C9IHV9	Salmonella_phage	5.7e-12	44.1
WP_000476150.1\|2157463_2157646_-	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_001019369.1\|2157638_2158472_-	hypothetical protein	G9L6G1	Escherichia_phage	5.3e-21	47.5
WP_106889433.1\|2158484_2158916_-	hypothetical protein	A0A1W6JPH9	Morganella_phage	6.7e-28	49.0
WP_106889434.1\|2158915_2159119_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_106889435.1\|2159231_2160077_-	hypothetical protein	NA	NA	NA	NA
WP_085457054.1\|2160172_2161432_-\|integrase	site-specific integrase	A0A1W6JPG6	Morganella_phage	5.1e-193	78.1
2161824:2161836	attR	NA	NA	NA	NA

DBSCAN-SWA_6

3175889 : 3183029

Escherichia_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001278992.1\|3175889_3176528_-	aldolase	A0A077SK32	Escherichia_phage	1.8e-82	74.5
WP_000590398.1\|3176524_3177787_-	3-oxo-tetronate kinase	A0A077SLJ7	Escherichia_phage	1.3e-135	61.4
WP_000848000.1\|3177783_3178692_-	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	1.5e-117	76.5
WP_001318002.1\|3178887_3179655_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	7.4e-70	57.4
WP_001141285.1\|3179705_3180362_-	protein-serine/threonine phosphatase	A0A077SLQ6	Escherichia_phage	4.3e-50	46.1
WP_001272914.1\|3180467_3183029_-	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	7.8e-31	20.7

DBSCAN-SWA_7

3769056 : 3778502

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_021539241.1\|3769056_3769983_+	glycine betaine ABC transporter ATP binding protein YehX	G3M9Y6	Bacillus_virus	1.3e-23	30.8
WP_000783127.1\|3769987_3770719_+	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA
WP_001216963.1\|3770699_3770807_-	protein YohO	NA	NA	NA	NA
WP_001240405.1\|3770866_3771598_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	2.2e-111	99.0
WP_001309587.1\|3771819_3773505_+	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	7.3e-304	99.5
WP_000598641.1\|3773501_3774221_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_052920575.1\|3774267_3774738_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.0e-82	99.4
WP_001296231.1\|3774779_3775241_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	3.2e-76	99.3
WP_001563695.1\|3775365_3777369_-	hypothetical protein	Q9EYF6	Enterobacteria_phage	0.0e+00	97.3
WP_001563693.1\|3777365_3778502_-	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	9.0e-165	98.4

DBSCAN-SWA_8

4296568 : 4352856

Shigella_phage(56.25%)

terminase,integrase,holin,protease,bacteriocin,tail,portal,capsid,lysis

attL 4295279:4295296|attR 4315471:4315488

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4295279:4295296	attL	NA	NA	NA	NA
WP_001254970.1\|4296568_4297390_-\|protease	serine protease	NA	NA	NA	NA
WP_000233090.1\|4297489_4297573_-	hypothetical protein	NA	NA	NA	NA
WP_000743943.1\|4297665_4298001_-	acid shock protein	NA	NA	NA	NA
WP_000091847.1\|4298398_4299652_-	MFS transporter	NA	NA	NA	NA
WP_001019561.1\|4299758_4300652_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000225276.1\|4300786_4302007_+	DNA-binding transcriptional repressor Mlc	NA	NA	NA	NA
WP_000919226.1\|4302131_4302827_+	ATP-dependent dethiobiotin synthetase BioD	NA	NA	NA	NA
WP_071586384.1\|4302779_4304072_-	voltage-gated ClC-type chloride channel ClcB	NA	NA	NA	NA
WP_000148698.1\|4304229_4304844_-	Tat proofreading chaperone DmsD	A0A077SLS7	Escherichia_phage	1.1e-28	36.3
WP_000526519.1\|4304886_4305741_-	dimethyl sulfoxide reductase anchor subunit	NA	NA	NA	NA
WP_000254426.1\|4305742_4306297_-	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	1.4e-62	57.7
WP_106889513.1\|4306334_4307498_-\|integrase	site-specific integrase	A0A088CD23	Shigella_phage	9.4e-226	99.2
WP_124034985.1\|4307353_4307800_-	helix-turn-helix domain-containing protein	S5FM74	Shigella_phage	4.2e-41	73.1
WP_000497813.1\|4307759_4308011_-	DUF4222 domain-containing protein	A0A088CBN9	Shigella_phage	1.3e-39	100.0
WP_106889514.1\|4308058_4308739_-	YqaJ viral recombinase family protein	V5UT69	Shigella_phage	3.5e-132	99.1
WP_000100822.1\|4308735_4309521_-	phage recombination protein Bet	A0A088CBI3	Shigella_phage	6.3e-149	100.0
WP_000995034.1\|4309526_4309823_-	host-nuclease inhibitor protein Gam	V5URU8	Shigella_phage	1.5e-50	100.0
WP_001271581.1\|4309819_4311868_-	exodeoxyribonuclease VIII	V5UQJ3	Shigella_phage	0.0e+00	98.5
WP_106889515.1\|4311976_4312363_-	hypothetical protein	A0A088CBP0	Shigella_phage	4.7e-65	96.9
WP_000560215.1\|4312453_4312669_-	cell division protein FtsZ	A0A088CE40	Shigella_phage	2.8e-35	98.6
WP_001005965.1\|4313000_4313357_-	hypothetical protein	A0A088CBI5	Shigella_phage	1.3e-56	100.0
WP_106425302.1\|4314157_4314229_-	hypothetical protein	NA	NA	NA	NA
WP_106889577.1\|4314198_4314255_-	hypothetical protein	NA	NA	NA	NA
WP_000930323.1\|4314456_4314795_-	hypothetical protein	K7PJW2	Enterobacteria_phage	2.0e-56	93.8
WP_000256293.1\|4314763_4315102_-	hypothetical protein	A0A0N7BZP1	Escherichia_phage	7.3e-54	97.3
WP_000846392.1\|4315810_4316518_-	helix-turn-helix transcriptional regulator	A0A0N7C1P9	Escherichia_phage	6.1e-127	99.6
4315471:4315488	attR	NA	NA	NA	NA
WP_001054988.1\|4316628_4316853_+	helix-turn-helix domain-containing protein	A0A0N7C1T6	Escherichia_phage	1.2e-36	100.0
WP_000084294.1\|4316968_4317265_+	hypothetical protein	A0A088CBI6	Shigella_phage	1.7e-46	96.9
WP_000438870.1\|4317279_4317498_+	hypothetical protein	A0A088CC17	Shigella_phage	1.1e-21	100.0
WP_024173690.1\|4317518_4318595_+	DNA-binding protein	V5URT9	Shigella_phage	6.5e-205	97.8
WP_000790395.1\|4318601_4319342_+	ATP-binding protein	V5UQI5	Shigella_phage	7.2e-139	100.0
WP_000450880.1\|4319367_4320138_+	DUF1627 domain-containing protein	A0A088CE47	Shigella_phage	6.6e-135	100.0
WP_001151119.1\|4320152_4320584_+	DUF977 family protein	A0A088CBK9	Shigella_phage	2.5e-75	100.0
WP_000060692.1\|4320616_4321291_-	DUF4145 domain-containing protein	V5URE2	Shigella_phage	1.3e-123	100.0
WP_000354190.1\|4321289_4321535_+	hypothetical protein	A0A088CC19	Shigella_phage	6.2e-39	100.0
WP_001240641.1\|4321582_4321888_-	HigA family addiction module antidote protein	A0A2L1IV52	Escherichia_phage	3.4e-50	100.0
WP_000597785.1\|4321887_4322166_-	hypothetical protein	A0A2L1IV28	Escherichia_phage	2.2e-48	97.8
WP_077166530.1\|4322504_4323227_+	hypothetical protein	A0A088CD42	Shigella_phage	7.4e-72	61.4
WP_106889516.1\|4323281_4323692_+	recombination protein NinB	A0A088CBP6	Shigella_phage	3.0e-70	97.8
WP_077166529.1\|4323688_4323880_+	NinE family protein	A0A0P0ZDL7	Stx2-converting_phage	4.4e-24	86.0
WP_000002238.1\|4323903_4324194_+	DUF1364 domain-containing protein	A0A088CE53	Shigella_phage	8.4e-51	99.0
WP_001008117.1\|4324190_4324553_+	RusA family crossover junction endodeoxyribonuclease	A0A088CBJ1	Shigella_phage	6.4e-64	100.0
WP_000992060.1\|4324552_4324747_+	protein ninH	A0A088CC23	Shigella_phage	1.4e-30	100.0
WP_001204860.1\|4324739_4325120_+	antitermination protein	A0A088CD47	Shigella_phage	4.0e-69	99.2
WP_106889517.1\|4325252_4325846_+	hypothetical protein	V5UT42	Shigella_phage	4.5e-107	99.0
WP_000691354.1\|4326419_4327367_+	Shiga toxin Stx1 subunit A	Q777W4	Enterobacteria_phage	3.2e-171	100.0
WP_000752026.1\|4327376_4327646_+	Shiga toxin Stx1a subunit B	Q7AYI7	Enterobacteria_phage	1.6e-43	100.0
WP_106889519.1\|4328150_4330091_+	SASA family carbohydrate esterase	A0A2L1IV62	Escherichia_phage	0.0e+00	98.6
WP_000142786.1\|4330224_4330404_+	DUF1378 family protein	A0A088CBQ0	Shigella_phage	3.2e-24	94.9
WP_001290230.1\|4330444_4330690_+	DUF826 domain-containing protein	A0A0P0ZGR2	Escherichia_phage	8.8e-17	100.0
WP_000284506.1\|4330767_4330983_+\|holin	holin	Q9ZWW2	Enterobacteria_phage	6.9e-34	100.0
WP_106889520.1\|4330987_4331521_+	lysozyme	A0A2L1IV49	Escherichia_phage	1.6e-100	98.3
WP_106889521.1\|4331795_4332395_+	hypothetical protein	A0A088CD55	Shigella_phage	5.0e-106	98.9
WP_158708408.1\|4332366_4332516_+	hypothetical protein	A0A0P0ZFU6	Escherichia_phage	9.1e-17	95.9
WP_106889522.1\|4332523_4332961_+\|lysis	lysis protein	A0A088CBQ1	Shigella_phage	9.4e-70	97.2
WP_106889523.1\|4333162_4333705_+	Rha family transcriptional regulator	A0A088CBJ5	Shigella_phage	2.4e-99	99.4
WP_001086073.1\|4334228_4335035_+\|terminase	terminase	A0A0P0ZG40	Escherichia_phage	1.3e-133	100.0
WP_106889524.1\|4335015_4336722_+\|terminase	terminase	A0A0H4IT14	Shigella_phage	0.0e+00	99.5
WP_106889525.1\|4336721_4338866_+\|portal	portal protein	A0A0P0ZGR1	Escherichia_phage	0.0e+00	99.9
WP_106889526.1\|4339022_4340030_+	hypothetical protein	A0A0P0ZGF7	Escherichia_phage	4.5e-168	94.3
WP_000214467.1\|4340053_4341268_+\|capsid	N4-gp56 family major capsid protein	A0A0N7KZY1	Escherichia_phage	1.7e-233	100.0
WP_001140440.1\|4341322_4341712_+	hypothetical protein	A0A0H4IQ95	Shigella_phage	1.3e-62	100.0
WP_001290743.1\|4341762_4342224_+	hypothetical protein	A0A2R2Z354	Escherichia_phage	7.8e-75	100.0
WP_052920643.1\|4342207_4342771_+	hypothetical protein	A0A0P0ZGG2	Escherichia_phage	1.2e-101	99.5
WP_000207918.1\|4342770_4343421_+	hypothetical protein	A0A0H4J3F2	Shigella_phage	3.5e-121	100.0
WP_106889527.1\|4343417_4345199_+\|tail	phage tail protein	A0A1I9LJS9	Stx_converting_phage	1.3e-61	99.2
WP_052920641.1\|4345267_4345939_+	DUF4376 domain-containing protein	S5MBX6	Escherichia_phage	1.5e-106	83.9
WP_052920640.1\|4346017_4347643_+	hypothetical protein	A0A0H4IT21	Shigella_phage	0.0e+00	98.0
WP_106889528.1\|4347639_4348992_+	DUF1983 domain-containing protein	A0A2R2Z364	Escherichia_phage	4.6e-192	96.4
WP_158708409.1\|4348952_4349324_+	hypothetical protein	S5MW25	Escherichia_phage	5.2e-61	94.3
WP_106889530.1\|4349719_4350121_+	hypothetical protein	A0A088CC37	Shigella_phage	6.0e-71	99.2
WP_000509482.1\|4350212_4350869_+	hypothetical protein	A0A0P0ZGF6	Escherichia_phage	5.1e-104	100.0
WP_000455647.1\|4350871_4351318_+	hypothetical protein	A0A088CBR0	Shigella_phage	8.1e-77	100.0
WP_000540391.1\|4351328_4351580_+\|bacteriocin	bacteriocin	A0A2R2Z351	Escherichia_phage	7.9e-13	100.0
WP_106889531.1\|4351590_4352856_+	hypothetical protein	A0A088CBK4	Shigella_phage	3.4e-205	91.7

DBSCAN-SWA_9

4361739 : 4366446

Shigella_phage(36.36%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_106889532.1\|4361739_4362084_-	YgiW/YdeI family stress tolerance OB fold protein	A0A1I9LJU6	Stx_converting_phage	2.8e-53	96.5
WP_033811247.1\|4362203_4362416_-	type I toxin-antitoxin system Hok family toxin	A0A0P0ZAX5	Stx2-converting_phage	1.6e-14	61.4
WP_032286200.1\|4362460_4362697_+	hypothetical protein	Q7Y2Q9	Escherichia_phage	1.8e-19	75.4
WP_106889533.1\|4362649_4363285_-	DUF551 domain-containing protein	A5VWB3	Enterobacteria_phage	7.6e-36	86.6
WP_106889534.1\|4363288_4363576_-	hypothetical protein	A0A1I9LJM1	Stx_converting_phage	2.3e-48	97.9
WP_106889535.1\|4363577_4363796_-	DUF4014 family protein	A0A1I9LJM2	Stx_converting_phage	3.1e-29	91.7
WP_106889536.1\|4364166_4364751_-	ead/Ea22-like family protein	A0A088CC42	Shigella_phage	4.9e-74	95.9
WP_000020910.1\|4364737_4365022_-	DUF4752 family protein	A0A088CD82	Shigella_phage	4.7e-46	98.9
WP_000763355.1\|4365018_4365240_-	TraR/DksA family transcriptional regulator	V5USD3	Shigella_phage	2.9e-35	98.6
WP_106889537.1\|4365287_4365917_-	phage antirepressor Ant	A0A088CBR4	Shigella_phage	1.2e-110	96.2
WP_000213043.1\|4366332_4366446_-	dimethylsulfoxide reductase	A0A077SL61	Escherichia_phage	2.1e-05	72.0

DBSCAN-SWA_10

4624728 : 4698672

Stx2-converting_phage(27.66%)

terminase,integrase,holin,transposase,protease,head,tail,capsid

attL 4687222:4687236|attR 4695416:4695430

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000422061.1\|4624728_4625778_-\|protease	protease SohB	A0A2H4UUF9	Bodo_saltans_virus	3.5e-22	32.0
WP_000559277.1\|4625997_4626756_+	YciK family oxidoreductase	A0A0N9R355	Chrysochromulina_ericina_virus	4.4e-06	23.4
WP_001278883.1\|4626752_4627343_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
WP_001563176.1\|4627394_4627703_-	hypothetical protein	NA	NA	NA	NA
WP_001563175.1\|4627713_4628715_-	hypothetical protein	NA	NA	NA	NA
WP_001291206.1\|4628884_4629760_-	23S rRNA pseudouridine(2605) synthase RluB	NA	NA	NA	NA
WP_106889550.1\|4629970_4631866_-	DUF2207 domain-containing protein	NA	NA	NA	NA
WP_001285692.1\|4632511_4633393_-	5'-3' exoribonuclease	NA	NA	NA	NA
WP_001700591.1\|4633530_4633575_+	trp operon leader peptide	NA	NA	NA	NA
WP_001194623.1\|4633666_4635229_+	anthranilate synthase component I	NA	NA	NA	NA
WP_000763524.1\|4635228_4636824_+	bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD	A0A0N7IRD9	Acinetobacter_phage	1.7e-52	38.5
WP_052920668.1\|4636827_4638186_+	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	A0A0P0IR83	Acinetobacter_phage	8.6e-37	40.7
WP_106889551.1\|4638197_4639391_+	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_001563169.1\|4639390_4640197_+	tryptophan synthase subunit alpha	NA	NA	NA	NA
WP_042103539.1\|4640578_4640758_+	general stress protein	NA	NA	NA	NA
WP_042103537.1\|4640843_4641344_+	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_001079498.1\|4641389_4641896_+	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_001049902.1\|4643502_4644174_-	DUF4376 domain-containing protein	S5MBX6	Escherichia_phage	2.5e-106	83.9
WP_001270059.1\|4645580_4646204_-	Ail/Lom family outer membrane beta-barrel protein	A0A1U8QHD6	Enterobacteria_phage	9.0e-66	59.9
WP_106889552.1\|4646272_4649968_-	DUF1983 domain-containing protein	Q6H9T2	Enterobacteria_phage	0.0e+00	84.1
WP_072121435.1\|4650882_4651515_-\|tail	tail assembly protein	Q9EYE5	Enterobacteria_phage	4.3e-100	90.5
WP_044808579.1\|4651460_4652204_-\|tail	phage tail protein	S5MQI8	Escherichia_phage	5.9e-149	98.0
WP_001373202.1\|4652214_4652913_-\|tail	phage minor tail protein L	S5M7Q4	Escherichia_phage	1.2e-130	97.4
WP_000343411.1\|4652912_4653254_-\|tail	phage tail protein	A0A0P0ZDL9	Stx2-converting_phage	6.9e-52	82.3
WP_106884700.1\|4653246_4656489_-\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	0.0e+00	87.9
WP_122993267.1\|4656536_4656746_-	DUF4035 domain-containing protein	H6WZM0	Escherichia_phage	1.5e-33	98.6
WP_000710934.1\|4656841_4657216_-\|tail	tail assembly protein	A0A0P0ZE84	Stx2-converting_phage	7.8e-65	99.2
WP_106889553.1\|4657230_4657947_-\|tail	phage tail protein	A0A0P0ZDV1	Stx2-converting_phage	1.0e-126	99.2
WP_000133388.1\|4658012_4658357_-	DUF3168 domain-containing protein	A0A0P0ZC17	Stx2-converting_phage	1.4e-57	100.0
WP_000573391.1\|4658353_4658800_-	HK97 gp10 family phage protein	A0A0N7KZI9	Stx2-converting_phage	5.2e-76	100.0
WP_001007905.1\|4658796_4659147_-\|head	phage head closure protein	A0A0P0ZB28	Stx2-converting_phage	1.6e-59	100.0
WP_000125990.1\|4659156_4659483_-\|head,tail	phage gp6-like head-tail connector protein	A0A0P0ZBH1	Stx2-converting_phage	9.2e-54	100.0
WP_001063099.1\|4662011_4662233_-	hypothetical protein	B6DZA0	Enterobacteria_phage	5.8e-36	100.0
WP_000172990.1\|4662277_4664215_-\|capsid	phage major capsid protein	Q6H9U8	Enterobacteria_phage	0.0e+00	99.7
WP_106879091.1\|4664278_4665940_-\|terminase	terminase large subunit	Q6H9U9	Enterobacteria_phage	0.0e+00	99.5
WP_000958387.1\|4665936_4666500_-\|terminase	terminase small subunit	A0A0N7KZJ8	Stx2-converting_phage	8.1e-90	100.0
WP_000829192.1\|4666789_4667155_-	HNH endonuclease	B6ETE5	Enterobacteria_phage	1.6e-62	96.7
WP_106889554.1\|4667196_4667397_+	DUF3950 domain-containing protein	H6WZK6	Escherichia_phage	3.7e-29	95.5
WP_000828070.1\|4667528_4667855_-	TonB family protein	H6WZK5	Escherichia_phage	6.3e-55	98.1
WP_072032668.1\|4668255_4668441_-	hypothetical protein	A0A0P0ZCT3	Stx2-converting_phage	2.7e-18	98.4
WP_072095843.1\|4668809_4668992_-	hypothetical protein	NA	NA	NA	NA
WP_001092904.1\|4669148_4669682_-	lysozyme	G9L6J6	Escherichia_phage	3.6e-100	96.0
WP_106889555.1\|4669718_4670057_-	YdfR family protein	Q08JA0	Stx2-converting_phage	1.2e-48	87.3
WP_000284506.1\|4670060_4670276_-\|holin	holin	Q9ZWW2	Enterobacteria_phage	6.9e-34	100.0
WP_001290207.1\|4670351_4670624_-	DUF826 domain-containing protein	A0A0P0ZC09	Stx2-converting_phage	1.3e-21	95.6
WP_000142780.1\|4670664_4670844_-	DUF1378 family protein	A0A2R2Z345	Escherichia_phage	5.4e-24	93.2
WP_106889556.1\|4670978_4672943_-	SASA family carbohydrate esterase	A0A0P0ZBH7	Stx2-converting_phage	1.9e-295	78.9
WP_106889557.1\|4674807_4675533_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_000271631.1\|4676229_4676658_-	cell envelope integrity protein TolA	NA	NA	NA	NA
WP_106889558.1\|4677138_4678197_-	site-specific DNA-methyltransferase	S5MDR0	Escherichia_phage	1.5e-206	98.9
WP_000917750.1\|4678347_4678545_-	hypothetical protein	S5MQK8	Escherichia_phage	1.0e-28	98.5
WP_000342737.1\|4678718_4679432_-	hypothetical protein	NA	NA	NA	NA
WP_001064918.1\|4679685_4680351_-	antiterminator	I6PDF8	Cronobacter_phage	1.6e-60	52.0
WP_000904135.1\|4680343_4680706_-	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	9.0e-34	61.9
WP_032347855.1\|4681769_4682039_-	hypothetical protein	I6PCV7	Cronobacter_phage	3.6e-11	50.8
WP_000042395.1\|4682908_4683226_+	DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_000882662.1\|4683328_4683541_-	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	2.5e-28	95.7
WP_000211993.1\|4683755_4684307_-	ORF6N domain-containing protein	A0A0N7C203	Escherichia_phage	5.5e-43	53.3
WP_000215512.1\|4684658_4684844_-	hypothetical protein	NA	NA	NA	NA
WP_047083545.1\|4685693_4686434_-	ATP-binding protein	A0A088CBP4	Shigella_phage	1.2e-112	82.3
WP_106889560.1\|4686440_4687478_-	hypothetical protein	U5P0A0	Shigella_phage	4.1e-55	61.2
4687222:4687236	attL	NA	NA	NA	NA
WP_000705131.1\|4687458_4687980_-	hypothetical protein	NA	NA	NA	NA
WP_000476991.1\|4687963_4688191_-	transcriptional regulator	NA	NA	NA	NA
WP_001003380.1\|4688268_4688676_+	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	5.5e-24	45.4
WP_000380317.1\|4688865_4689018_+	DUF1391 family protein	M4QQ57	Salicola_phage	5.1e-07	53.2
WP_001365839.1\|4689029_4689398_+	hypothetical protein	NA	NA	NA	NA
WP_000450222.1\|4690182_4690371_+	cell division inhibitor	NA	NA	NA	NA
WP_000092839.1\|4690367_4690556_+	DUF1482 family protein	NA	NA	NA	NA
WP_106889561.1\|4690651_4693123_+	exonuclease	A0A192Y6E0	Salmonella_phage	2.0e-55	56.6
WP_000113183.1\|4693187_4693436_+	excisionase	NA	NA	NA	NA
WP_000113693.1\|4693413_4694544_+\|integrase	tyrosine-type recombinase/integrase	O21940	Phage_21	4.0e-104	51.4
WP_042106135.1\|4694589_4695243_-	outer membrane protein OmpW	NA	NA	NA	NA
WP_000028546.1\|4695599_4696343_+	UPF0259 family protein	NA	NA	NA	NA
4695416:4695430	attR	NA	NA	NA	NA
WP_000808667.1\|4696372_4696912_+	septation protein A	NA	NA	NA	NA
WP_042106136.1\|4697016_4697436_+	acyl-CoA thioester hydrolase YciA	NA	NA	NA	NA
WP_101774106.1\|4697416_4698672_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	3.1e-17	33.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP027452

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection