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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP027341 Escherichia coli strain 2015C-3121 plasmid unnamed 0 crisprs NA 0 0 0 0
NZ_CP027340 Escherichia coli strain 2015C-3121 chromosome, complete genome 3 crisprs cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,PD-DExK,csa3,DEDDh,DinG,c2c9_V-U4 0 5 20 0

Results visualization

1. NZ_CP027340
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP027340_1 73476-74116 TypeI-E I-E
10 spacers
cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP027340_2 99769-99982 Unclear I-E
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP027340_3 2998985-2999130 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP027340_1 1.1|73505|32|NZ_CP027340|PILER-CR,CRISPRCasFinder,CRT 73505-73536 32 NZ_CP050442 Tolypothrix sp. PCC 7910 plasmid unnamed2, complete sequence 41503-41534 6 0.812
NZ_CP027340_1 1.2|73566|32|NZ_CP027340|PILER-CR,CRISPRCasFinder,CRT 73566-73597 32 CP000662 Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence 649166-649197 6 0.812
NZ_CP027340_1 1.6|73811|32|NZ_CP027340|PILER-CR,CRISPRCasFinder,CRT 73811-73842 32 NZ_CP015609 Bacillus safensis strain U14-5 plasmid unnamed2, complete sequence 10946-10977 6 0.812
NZ_CP027340_1 1.6|73811|32|NZ_CP027340|PILER-CR,CRISPRCasFinder,CRT 73811-73842 32 NZ_CP025188 Roseomonas mucosa strain AD2 plasmid p1-AD2, complete sequence 305380-305411 6 0.812
NZ_CP027340_2 2.5|99861|32|NZ_CP027340|CRISPRCasFinder 99861-99892 32 CP054922 Streptomyces sp. NA03103 plasmid unnamed2, complete sequence 68158-68189 6 0.812
NZ_CP027340_1 1.2|73566|32|NZ_CP027340|PILER-CR,CRISPRCasFinder,CRT 73566-73597 32 MT889371 Microbacterium phage DelaGarza, complete genome 35549-35580 8 0.75
NZ_CP027340_2 2.2|99861|30|NZ_CP027340|PILER-CR,CRT 99861-99890 30 CP054922 Streptomyces sp. NA03103 plasmid unnamed2, complete sequence 68158-68187 8 0.733
NZ_CP027340_1 1.2|73566|32|NZ_CP027340|PILER-CR,CRISPRCasFinder,CRT 73566-73597 32 NZ_CP044425 Paracoccus pantotrophus strain DSM 2944 plasmid pPAN2, complete sequence 203634-203665 9 0.719
NZ_CP027340_1 1.6|73811|32|NZ_CP027340|PILER-CR,CRISPRCasFinder,CRT 73811-73842 32 LN997844 Streptomyces reticuli genome assembly TUE45, plasmid : III 74068-74099 10 0.688

1. spacer 1.1|73505|32|NZ_CP027340|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050442 (Tolypothrix sp. PCC 7910 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.812

aaaaccaaacttctccataaattccatagccg	CRISPR spacer
attactaaacttctgcataaattccataggag	Protospacer
*  **.******** **************  *

2. spacer 1.2|73566|32|NZ_CP027340|PILER-CR,CRISPRCasFinder,CRT matches to CP000662 (Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence) position: , mismatch: 6, identity: 0.812

acgcgcgtaccggatcgcggacaacaaattgc	CRISPR spacer
gcgggcgtaccgcatcgcggacaacaagctga	Protospacer
.** ******** **************..** 

3. spacer 1.6|73811|32|NZ_CP027340|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015609 (Bacillus safensis strain U14-5 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.812

gcagtggtgaggccgggaagcgcggttgagtc	CRISPR spacer
ggattggtcaggccgggaagcgcggttgccgc	Protospacer
* * **** *******************   *

4. spacer 1.6|73811|32|NZ_CP027340|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025188 (Roseomonas mucosa strain AD2 plasmid p1-AD2, complete sequence) position: , mismatch: 6, identity: 0.812

gcagtggtgaggccgggaagcgcggttgagtc	CRISPR spacer
ggattggtcaggccgggaagcgcggttgccgc	Protospacer
* * **** *******************   *

5. spacer 2.5|99861|32|NZ_CP027340|CRISPRCasFinder matches to CP054922 (Streptomyces sp. NA03103 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.812

gtgaccgtcggtgttacgctgaactgctgaaa--	CRISPR spacer
gtgaccgtcggtgttccggtgaa--gcggaaggc	Protospacer
*************** ** ****  ** ***.  

6. spacer 1.2|73566|32|NZ_CP027340|PILER-CR,CRISPRCasFinder,CRT matches to MT889371 (Microbacterium phage DelaGarza, complete genome) position: , mismatch: 8, identity: 0.75

acgcgcgtaccggatcgcggacaacaaattgc	CRISPR spacer
gcgcgcctaccggatcgcggacaaccgcacgg	Protospacer
.***** ****************** .  .* 

7. spacer 2.2|99861|30|NZ_CP027340|PILER-CR,CRT matches to CP054922 (Streptomyces sp. NA03103 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

gtgaccgtcggtgttacgctgaactgctga	CRISPR spacer
gtgaccgtcggtgttccggtgaagcggaag	Protospacer
*************** ** **** .*  ..

8. spacer 1.2|73566|32|NZ_CP027340|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044425 (Paracoccus pantotrophus strain DSM 2944 plasmid pPAN2, complete sequence) position: , mismatch: 9, identity: 0.719

acgcgcgtaccggatcgcggacaacaaattgc------	CRISPR spacer
tcgcgcggaccggatcgcggccaa------gccccgcg	Protospacer
 ****** ************ ***      **      

9. spacer 1.6|73811|32|NZ_CP027340|PILER-CR,CRISPRCasFinder,CRT matches to LN997844 (Streptomyces reticuli genome assembly TUE45, plasmid : III) position: , mismatch: 10, identity: 0.688

gcagtggtgaggccgggaagcgcggttgagtc	CRISPR spacer
tgcgtggtgcgcccgggaagcgcggtgtcgca	Protospacer
   ****** * **************   *. 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 49203 : 57120 6 Escherichia_phage(83.33%) NA NA
DBSCAN-SWA_2 322496 : 365096 45 Enterobacteria_phage(23.08%) integrase,transposase,protease attL 316201:316215|attR 356423:356437
DBSCAN-SWA_3 1065312 : 1119123 42 Morganella_phage(17.65%) integrase,transposase,tRNA,protease attL 1095110:1095126|attR 1125800:1125816
DBSCAN-SWA_4 1653863 : 1722073 56 Enterobacteria_phage(15.79%) transposase,tRNA NA
DBSCAN-SWA_5 1733379 : 1744567 13 Salmonella_phage(42.86%) NA NA
DBSCAN-SWA_6 1860859 : 1923797 59 Enterobacteria_phage(50.0%) integrase,transposase,protease attL 1887876:1887935|attR 1926938:1927706
DBSCAN-SWA_7 2073289 : 2158343 90 Enterobacteria_phage(32.2%) holin,transposase,tRNA,portal,lysis,tail,integrase,protease,terminase attL 2067893:2067907|attR 2097089:2097103
DBSCAN-SWA_8 2268717 : 2354597 91 Shigella_phage(53.49%) transposase,head,tRNA,plate,tail,integrase,protease attL 2263294:2263309|attR 2323822:2323837
DBSCAN-SWA_9 2696471 : 2774042 81 Enterobacteria_phage(52.73%) transposase,head,tRNA,portal,lysis,tail,capsid,integrase,protease,terminase attL 2719083:2719129|attR 2765516:2765562
DBSCAN-SWA_10 3116027 : 3124428 9 uncultured_Caudovirales_phage(33.33%) integrase attL 3105420:3105434|attR 3130490:3130504
DBSCAN-SWA_11 3275460 : 3342274 75 Escherichia_phage(62.32%) transposase,holin,lysis,tail,capsid,integrase,terminase attL 3271612:3271671|attR 3288486:3289255
DBSCAN-SWA_12 3448750 : 3524576 91 Escherichia_phage(42.86%) holin,head,tRNA,transposase,tail,capsid,integrase,terminase attL 3440225:3440242|attR 3501279:3501296
DBSCAN-SWA_13 3625740 : 3705040 83 Escherichia_phage(35.09%) transposase,holin,head,tail,capsid,integrase,protease,terminase attL 3624898:3624914|attR 3683985:3684001
DBSCAN-SWA_14 4008354 : 4021338 18 uncultured_Caudovirales_phage(87.5%) terminase,capsid,head,protease NA
DBSCAN-SWA_15 4146205 : 4193226 60 Enterobacteria_phage(75.51%) holin,head,tRNA,portal,plate,tail,capsid,integrase,terminase attL 4148608:4148632|attR 4185867:4185891
DBSCAN-SWA_16 4298006 : 4388479 106 Enterobacteria_phage(33.33%) integrase,head,tRNA,portal,lysis,tail,capsid,terminase,protease,holin attL 4317878:4317893|attR 4391234:4391249
DBSCAN-SWA_17 4634461 : 4643902 10 Enterobacteria_phage(85.71%) NA NA
DBSCAN-SWA_18 4751550 : 4820369 59 Escherichia_phage(46.3%) integrase,transposase,capsid,holin attL 4762688:4762702|attR 4823208:4823222
DBSCAN-SWA_19 4957829 : 5022732 68 Escherichia_phage(80.6%) integrase,capsid,holin attL 4972314:4972373|attR 5034309:5035078
DBSCAN-SWA_20 5256535 : 5338145 88 Salmonella_phage(69.23%) integrase,transposase,head,tRNA,portal,lysis,plate,tail,capsid,terminase attL 5301206:5301251|attR 5335448:5335493
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage