CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NZ_CP020943	Pantoea ananatis strain PNA 97-1R chromosome, complete genome	1 crisprs	DEDDh,cas3,DinG,csa3	4	15	7
NZ_CP020945	Pantoea ananatis strain PNA 97-1R plasmid unamed2, complete sequence	0 crisprs	NA	0	0	0
NZ_CP020944	Pantoea ananatis strain PNA 97-1R plasmid unamed1, complete sequence	0 crisprs	NA	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP020943_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP020943_1

3888879-3890101

Orphan

Consensus_repeat	Method
GTCTGGGTACTGCCGTAACCGGC	CRISPRCasFinder

25 spacers

The CRISPR arrays of NZ_CP020943_1

>merge|NZ_CP020943|1|3888879-3890101|CRISPRCasFinder
GTTGAGGTGCTGCCGTAGCCGGTCGTCAGCACACTCTGTTCGCGCGCCGTCTGCGTACTGCCGTAGCCCGCCGTCAGGCTACTGTGATAACTGGCGGTCTGGGTGCTGCCGTAACCTGCAATGATTGAGCTGTCCGAGCCTGCCGTGCCGGTGCTGCCGTACCCGGCAGTGAGGTCACTGCCTTCTCTCGCCGTCTGGGTACTGCCGTAGCCCGCCGTTAGCACACTGTTGTAGCTGGCTGTCTGCGTGCTGCCATAGCCTGCGATCAGTGAACTATTTGCCCCGGCTGTAGACGTACTGCCATAGCCGGTGATGAGATCGCTTTCGTTCTGCGCGGTCTGCGTACTGCCGTAACCCGCTGTCAGCGTGCTACCGTAACCCGCTGTCTGGGTACTGCCATAGCCCGCGATCAATGAACTTTCATAGCCTGCCGTAGAGGTACTACCATAACCGGCCGTAAGATCGCTGCCCTTCTGCGCGGTCTGGGTACTGCCGTAACCGGCTGTCAGTGAGCTGTCTTCGCCCGCCGTCTGGGTACTGCCGTAACCGGCGATCAGAGAGCTGTCGTCACCCGCCGTACCGGTACTGCCGTAACCGGCCGTAAGGTCGCTGCCCTTCTGCGCGGTCTGGGTGCTGCCATAACCGGCTGTCTGGGTGCTCTCTTCCCCGGCCGTCTGGGTGCTACCGTAGCCCGCGATTAATGAACTGTCGGCACCCGCCGTGCCGGTACTGCCATAACCTGCAGTAAGATCGCTGCCCTTCTGCGCGGTCTGGGTACTGCCGTAACCGGCTGTCAGCGAGCTGTCTTCGCCCGCCGTCTGGGTACTGCCGTAACCGGCGATCAGGGAGCTGTCGTCACCCGCCGTACCGGTACTGCCGTAACCGGCCGTAAGGTCGCTGCCCTTCTGCGCGGTCTGGGTGCTGCCATAACCGGCTGTCTGGGTGCTCTCTTCCCCGGCCGTCTGGGTGCTCCCGTAGCCCGCGATTAATGAACTGTCGGCACCCGCCGTGCCGGTACTGCCATAACCCGCGGTAAGATCGCTGCCCTTCTGCGCGGTCTGCGTGCTGCCGTAACCGGCTGTCAGCGAGCTGTCTTCGCCCGCCGTCTGGGTACTGCCGTAACCGGCGATCAGGGAGCTGTCGGCGCCCGCCGTGCCGGTACTACCGTAACCGGCGGTGAGATCGCTGCCTTTCATGCCGGTCTGCGTGCTGCCGTAACCCGC

>NZ_CP020943|1|1|3888879-3890101|CRISPRCasFinder
GTTGAGGTGCTGCCGTAGCCGGT	CGTCAGCACACTCTGTTCGCGCGCC
GTCTGCGTACTGCCGTAGCCCGC	CGTCAGGCTACTGTGATAACTGGCG
GTCTGGGTGCTGCCGTAACCTGC	AATGATTGAGCTGTCCGAGCCTGCC
GTGCCGGTGCTGCCGTACCCGGC	AGTGAGGTCACTGCCTTCTCTCGCC
GTCTGGGTACTGCCGTAGCCCGC	CGTTAGCACACTGTTGTAGCTGGCT
GTCTGCGTGCTGCCATAGCCTGC	GATCAGTGAACTATTTGCCCCGGCT
GTAGACGTACTGCCATAGCCGGT	GATGAGATCGCTTTCGTTCTGCGCG
GTCTGCGTACTGCCGTAACCCGC	TGTCAGCGTGCTACCGTAACCCGCT
GTCTGGGTACTGCCATAGCCCGC	GATCAATGAACTTTCATAGCCTGCC
GTAGAGGTACTACCATAACCGGC	CGTAAGATCGCTGCCCTTCTGCGCG
GTCTGGGTACTGCCGTAACCGGC	TGTCAGTGAGCTGTCTTCGCCCGCC
GTCTGGGTACTGCCGTAACCGGC	GATCAGAGAGCTGTCGTCACCCGCC
GTACCGGTACTGCCGTAACCGGC	CGTAAGGTCGCTGCCCTTCTGCGCG
GTCTGGGTGCTGCCATAACCGGC	TGTCTGGGTGCTCTCTTCCCCGGCC
GTCTGGGTGCTACCGTAGCCCGC	GATTAATGAACTGTCGGCACCCGCC
GTGCCGGTACTGCCATAACCTGC	AGTAAGATCGCTGCCCTTCTGCGCG
GTCTGGGTACTGCCGTAACCGGC	TGTCAGCGAGCTGTCTTCGCCCGCC
GTCTGGGTACTGCCGTAACCGGC	GATCAGGGAGCTGTCGTCACCCGCC
GTACCGGTACTGCCGTAACCGGC	CGTAAGGTCGCTGCCCTTCTGCGCG
GTCTGGGTGCTGCCATAACCGGC	TGTCTGGGTGCTCTCTTCCCCGGCC
GTCTGGGTGCTCCCGTAGCCCGC	GATTAATGAACTGTCGGCACCCGCC
GTGCCGGTACTGCCATAACCCGC	GGTAAGATCGCTGCCCTTCTGCGCG
GTCTGCGTGCTGCCGTAACCGGC	TGTCAGCGAGCTGTCTTCGCCCGCC
GTCTGGGTACTGCCGTAACCGGC	GATCAGGGAGCTGTCGGCGCCCGCC
GTGCCGGTACTACCGTAACCGGC	GGTGAGATCGCTGCCTTTCATGCCG
GTCTGCGTGCTGCCGTAACCCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020943.2\|WP_014595264.1\|3881529_3882927_-\|MHS-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340927
NZ_CP020943.2\|WP_014606664.1\|3898624_3899386_+\|2-dehydro-3-deoxy-D-gluconate-5-dehydrogenase-KduD	unknown	unknown	gnl\|CDD\|181605
NZ_CP020943.2\|WP_013024496.1\|3876198_3876645_+\|DUF1640-domain-containing-protein	unknown	unknown	gnl\|CDD\|369525
NZ_CP020943.2\|WP_029570973.1\|3883069_3884101_-\|alcohol-dehydrogenase-catalytic-domain-containing-protein	unknown	unknown	gnl\|CDD\|182130
NZ_CP020943.2\|WP_104933143.1\|3879775_3880444_+\|YecA-family-protein	unknown	unknown	gnl\|CDD\|236680
NZ_CP020943.2\|WP_014595268.1\|3877521_3878028_-\|RcnB-family-protein	unknown	unknown	gnl\|CDD\|378715
NZ_CP020943.2\|WP_104933137.1\|3900925_3903415_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020943.2\|WP_014595259.1\|3891234_3892572_-\|nitrate/sulfonate/bicarbonate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224041
NZ_CP020943.2\|WP_104933141.1\|3885234_3886488_+\|starvation-sensing-protein-RspA	unknown	unknown	gnl\|CDD\|239438
NZ_CP020943.2\|WP_104933142.1\|3884142_3884910_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187605
NZ_CP020943.2\|WP_019105049.1\|3903570_3904911_-\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|223238
NZ_CP020943.2\|WP_042677836.1\|3878159_3879302_-\|serine-hydrolase	unknown	unknown	gnl\|CDD\|365903
NZ_CP020943.2\|WP_104933138.1\|3897732_3898569_+\|5-dehydro-4-deoxy-D-glucuronate-isomerase	unknown	unknown	gnl\|CDD\|179169
NZ_CP020943.2\|WP_014606662.1\|3896714_3897311_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020943.2\|WP_014606656.1\|3876667_3877378_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
NZ_CP020943.2\|WP_104933139.1\|3895745_3896705_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020943.2\|WP_015701022.1\|3892582_3894319_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|227319
NZ_CP020943.2\|WP_088900685.1\|3899816_3900896_+\|glycoside-hydrolase-105-family-protein	unknown	unknown	gnl\|CDD\|226678
NZ_CP020943.2\|WP_013024491.1\|3880719_3881430_-\|FadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225097
NZ_CP020943.2\|WP_041457942.1\|3895039_3895354_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274511

Protein	Function_ID	Function_description	E-value
NZ_CP020943.2\|WP_014595264.1\|3881529_3882927_-\|MHS-family-MFS-transporter	gnl\|CDD\|340927	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli shikimate transporter (ShiA), inner membrane metabolite transport protein YhjE, and other putative metabolite transporters. ShiA is involved in the uptake of shikimate, an aromatic compound involved in siderophore biosynthesis. It has been suggested that YhjE may mediate the uptake of osmoprotectants. The ShiA-like subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.01622e-144
NZ_CP020943.2\|WP_014606664.1\|3898624_3899386_+\|2-dehydro-3-deoxy-D-gluconate-5-dehydrogenase-KduD	gnl\|CDD\|181605	PRK08993, PRK08993, 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD.	1.54551e-168
NZ_CP020943.2\|WP_013024496.1\|3876198_3876645_+\|DUF1640-domain-containing-protein	gnl\|CDD\|369525	pfam07798, DUF1640, Protein of unknown function (DUF1640). This family consists of sequences derived from hypothetical eukaryotic proteins. A region approximately 100 residues in length is featured.	3.82631e-07
NZ_CP020943.2\|WP_029570973.1\|3883069_3884101_-\|alcohol-dehydrogenase-catalytic-domain-containing-protein	gnl\|CDD\|182130	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional.	0
NZ_CP020943.2\|WP_104933143.1\|3879775_3880444_+\|YecA-family-protein	gnl\|CDD\|236680	PRK10396, PRK10396, hypothetical protein; Provisional.	1.21682e-145
NZ_CP020943.2\|WP_014595268.1\|3877521_3878028_-\|RcnB-family-protein	gnl\|CDD\|378715	pfam11776, RcnB, Nickel/cobalt transporter regulator. RcnB is a family of Proteobacteria proteins. RcnB is required for maintaining metal ion homeostasis, in conjunction with the efflux pump RcnA, family NicO, pfam03824.	9.97795e-17
NZ_CP020943.2\|WP_014595259.1\|3891234_3892572_-\|nitrate/sulfonate/bicarbonate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224041	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism].	1.10133e-115
NZ_CP020943.2\|WP_104933141.1\|3885234_3886488_+\|starvation-sensing-protein-RspA	gnl\|CDD\|239438	cd03322, RspA, The starvation sensing protein RspA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.	7.61333e-173
NZ_CP020943.2\|WP_104933142.1\|3884142_3884910_-\|SDR-family-oxidoreductase	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	4.4571e-101
NZ_CP020943.2\|WP_019105049.1\|3903570_3904911_-\|aspartate-aminotransferase-family-protein	gnl\|CDD\|223238	COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism].	3.68765e-149
NZ_CP020943.2\|WP_042677836.1\|3878159_3879302_-\|serine-hydrolase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	2.23776e-45
NZ_CP020943.2\|WP_104933138.1\|3897732_3898569_+\|5-dehydro-4-deoxy-D-glucuronate-isomerase	gnl\|CDD\|179169	PRK00924, PRK00924, 5-keto-4-deoxyuronate isomerase; Provisional.	0
NZ_CP020943.2\|WP_014606656.1\|3876667_3877378_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	1.57583e-26
NZ_CP020943.2\|WP_088900685.1\|3899816_3900896_+\|glycoside-hydrolase-105-family-protein	gnl\|CDD\|226678	COG4225, COG4225, Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only].	8.14207e-96
NZ_CP020943.2\|WP_015701022.1\|3892582_3894319_-\|ABC-transporter-permease-subunit	gnl\|CDD\|227319	COG4986, COG4986, ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism].	9.87772e-179
NZ_CP020943.2\|WP_013024491.1\|3880719_3881430_-\|FadR-family-transcriptional-regulator	gnl\|CDD\|225097	COG2186, FadR, Transcriptional regulators [Transcription].	5.11816e-52
NZ_CP020943.2\|WP_041457942.1\|3895039_3895354_-\|hypothetical-protein	gnl\|CDD\|274511	TIGR03300, assembly_YfgL, outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. [Protein fate, Protein and peptide secretion and trafficking].	0.00946454

>NZ_CP020943.2|WP_104933141.1|3885234_3886488_+|starvation-sensing-protein-RspA
MSNLFITNVKTILTAPGGIDLVVVKIETNEPGLYGLGCATFTQRIYAVQSAIDEYLAPFLIGKDPARIEDIWQSAAVSGYWRNGPVMNNALSGIDMALWDIKGKQAGLPVYELLGGKCRDGIALYVHTDGADEVEVEDSALAKMEEGYQYIRCQMGMYGGAGTDDLRLIANRMVKAKNIQPKRSPRTKAPGIYFDPEAYAKSIPRLFDHLRNKLGFSVELLHDAHERITPINAIHMAKALEPYQLFFLEDPVAPENTEWLKMLRQQSSTPIAMGELFVNVNEWKPLIDNKLIDYIRCHISSIGGITPAKKIAIYSELNGVRTAWHSPGDISPIGVCANMHLDLSSPNFGIQEYTPMNDALREVFPGCPEVDQGYAYVNDKPGLGIDINEALAAKFPCEGGNPTWTMARTPDGTVWRP
>NZ_CP020943.2|WP_104933142.1|3884142_3884910_-|SDR-family-oxidoreductase
MTAMFDLTGKTALITGSSRGLGFAYAEALAAAGAEVILNGTREAVLNEAVEQLKNKGYRVSGRVFDVTCESAIEQVFASLDEQGIAVDIVINNAGIQYRKPMLELELENWQKVIDTNLTSAFLVSRAAAKRMIARDRGGKIINVGSLTSQAARPTVAPYTAAKGGIKMLTCSMAAEWAQFNIQTNAIGPGYILTDMNSALVDDARFDSWVKNSNPSQRWGRPEEVAGTAVFLSSPASDYINGQIIYVDGGWLAVL
>NZ_CP020943.2|WP_029570973.1|3883069_3884101_-|alcohol-dehydrogenase-catalytic-domain-containing-protein
MTHACVAKGKKEIAVEQRELKYSDDDVVVQVECGGICGSDIHYYHEGRAGLSVIKQPLVIGHEFVGRIFQAPAASGLEPGQKVAINPSQPCGQCEYCRAGKQNACATMRFMGSAQFTPHVNGGFAQYVVVPAKQCVAYDEQVPASVMAVAEPTAVVIHALNVAGSIVGKRVLVMGAGPIGALAIAAASASGAAEIVAFDPSERCRRIAVEMGADAAVDASDRAAVARYGENRGYFDVTLEASGAEAAIESSILVTRPGGVVVQIGMGKSPLNFPVAQMLVKEISWKGSFRFIDEFDVAVKWLEKGIIDPRPILSGNYAYHDIEAALKAASDKTQHSKVLVQFS
>NZ_CP020943.2|WP_014595264.1|3881529_3882927_-|MHS-family-MFS-transporter
MSHLNTNTTERNTSDLVRASVSGWLGTTLEFMDFQLYSLGAALVFHEVFFPEQSGAMALILAMGTYGAGYIARIVGAVFFGKMGDRVGRKKVLFITIALMGVCTTLIGVLPTYQQVGILAPLLLVALRIIQGLGAGAEISGASTMLAEYAPKGKKGIIASLVAMGTNCGTLSATAIWAAMFFFFTNDEVIAWAWRIPFLASFVVMGFAIWLRFNLKESPVFENVAESATVKPHDQPAQSVFQLIKGKAFWIATGLRFGQAGNSGIIQTFLAGYMVQTLLFNKAVPTDAIMVSSVIGFMTIPLIGWLSDRIGRRIPYRILTLGSIILAYPMISLIVDNAQAVSTIMVCLIVIHNIAVLGQAAIEGITMAEMFGSRNRFAQMAISKEIGGLFATGLGPLLAGIFCQLTGTWYPIAIMLIGYSCIGLLASLIMPEVVDRDLTAEADASGGVPDGCHPVAPSIRAGSGE
>NZ_CP020943.2|WP_013024491.1|3880719_3881430_-|FadR-family-transcriptional-regulator
MSIKSIQKQNVVNEVFEQIKAKLLDGSWSAGTRLPSEAELTHSFNVSRVSIRSAVQRLRDLGIVITRQGSGSYVCEDFSPQMLNHNARPLMHLSREAFNDMMVFRQTVEFKCVELAVEHATEEDIGLLEQALNNMLINKGDYKKYSEADYEFHLAIIRASHNSVFYNVMKSIKDIYYYYLEELNRSLGITLESVEAHIKVFMAIKNRDASSAVQVLNEAMKHNVVAIDMIKKEEGE
>NZ_CP020943.2|WP_104933143.1|3879775_3880444_+|YecA-family-protein
MKEGPLSEKELQWLEDMLEKYGSEASILDVSELDGLLTAVLSGPTTVEPSRWLVALWGGEKHIPKWSNEREMTRFMELSFQHMNDIADRLSEFPEQFAPLFGVREMEGLEFTIVEEWCYGYMRGVALTDWSALPAELQDSLDAIALHGTEENLEKVDALTPEEMESSIDAIRPAALALHDYWISQPEAIPQVQQPVTAEKQPGRNDPCPCGSGRKYKQCCLH
>NZ_CP020943.2|WP_042677836.1|3878159_3879302_-|serine-hydrolase
MISALLLAACGTLSQTSAPAGDKLYLTHSDFHDNLDDLVRHYMQRKQVSGISIAIIHHLNPTLFYSAGVTDDVHRYPITPETLFALGSLSKGVTAEVIIELVNEGQLHWSDTLADLLPSDVRLSQDARQITLLQLVTHTSGLPRQDMDLPMFMQFMGYLRSGQNFYGNLDSDDVLEYLAEFSAPRQRGAQYSNLGYALLGYILRERCHSDIETLAHQRIFRPLGMNNTSFVPERLSGFSTRALGHAGDQPKLIPRGDLTPDWRFQHNMVAAGSLYSNARDLSVYLRAHLTAGSDPARNRAFAEINKGVYQQGAQTQNIAWVTDRLAGRNITYQVGYIGGYSAFIGFDKQAGNAIVVLQNAFNWSNYLGITLLLNLAEKDR
>NZ_CP020943.2|WP_014595268.1|3877521_3878028_-|RcnB-family-protein
MRRTQIAFISAGLLFGSLSLIPAAQAAGETTDNVPPPPQIQPANPTAQPGDNNAQPGAAAPAQPQAPMSSDSNDGITPTTPSQSAGNPGKPNYDLSTIIIDYKEHKIGDTVPDKYRSKTYTITEWQKRNLPAPQPDTHWAYINANYILITNDTGKIVMGKSGDIFFRG
>NZ_CP020943.2|WP_014606656.1|3876667_3877378_-|GNAT-family-N-acetyltransferase
MMSQHVNQYGQPVGQSMPDWQPRPLPQREVLQGQVCRLEPFSVASHAEALWQAWSLAEDGRDWTYLSDGPFNDEAAWLTHAATMEASQDPLHFSVIDVETGKAVGTLSLMRVDAQNGVMEVGYVTFSRLLKQTRMATEAHFLLMRYAFEQLGYRRYEWKCDSCNLPSRRAALRLGFRFEGEFRQARVYKGRTRDTSWFSIIDSEWPAVKNGLERWLAEANFTADGRQREKLETLRG
>NZ_CP020943.2|WP_013024496.1|3876198_3876645_+|DUF1640-domain-containing-protein
MTLTMMNTHKAFKRLQRAGINDRQAEAMVDIFSALKQDNALSRADVMQAFQRQNQHIFSLSTQLKKTESCLRTDVDELKADVSVLKTDVAVLKTDVSVLKTDVAELKTDVSVLKTDVGSLKNDMRWVQRLLMIMTTTLLMATIKYVLA
>NZ_CP020943.2|WP_014595259.1|3891234_3892572_-|nitrate/sulfonate/bicarbonate-ABC-transporter-ATP-binding-protein
MLNNPPTLNPDVSNRKPEGRKAVLTVKDIKHGYDKTHGEVLILDDVNLTLQEGEIVGLLGRSGSGKSTLLRIISGLITPGSGAVEYLGKPLNGPAKGVAMVFQTFALFPWLTVLQNVEAGLEALGVEKAERRKRALAAIDLIGLDGFENAYPRELSGGMRQRVGFARALVVDPTLLLMDEPFSALDVLTAETLRTDLLDLWNEGQMPMKSVLIVTHNIEEAVFMCDRILVLSSNPGRVVAEIKVPFGHPRNRLDPAFRRLVDDVYTQMTARPTSDNVKKSLRLGTHLPQVSTNLMAGLIETLAAAPYHGRADMPDVARSLHLEVDELFPIAEVLQSLGFADVREGDIFLTPPARVFAESDTQQRKVMFADHLLRYVPLAALIKTVLDERPGHRAPRMRFEQELEDSLADSAAKETLDSVINWGRYAEIFSYNDQTEYFSLEDVEF
>NZ_CP020943.2|WP_015701022.1|3892582_3894319_-|ABC-transporter-permease-subunit
MNFRFTMLAANRRLLPNVWDAVAFPLIICLIAMVAVGFHQTLMPIDSLKTQAISLDPTNLPEYAMRTTLRMLVAMLASLVFSLIYGTLAAKSRRAEKVLVPILDILQSVPVLGYISFTVTFFIALFPGQVLGVELAAIFALFTSQAWNMTFSFYQSLRTVPADLVEVSRGFHLTGWQRFWKLDAPFAVPGLVWNMMMSMSGGWFFIVASEAITVGNNTFTLPGVGGYLAQAILHKDIHAVGWVLLTMVIVILAYDQLLFRPLVAWADKFRMENTRSGNAPTSWVRDLMRRTRLIHQIFTPLRLLLSALARISWRWPTAAPVRFENNTRRASRLGDIVWGAFVILLTLYVVYRVITYVQSGVTLDEVKHVFTLGLITLLRVTVLILISSLIWVPLGVMIGLRPALAGKIQPVAQFLAAFPANLMFPVFVIMIVHFHLNPDIWLSPLIVLGTQWYILFNVVAGTTAFPNDYKEAAANFHIRGWQWWRQVMLPGIFPYYITGAITASGGAWNASIVSEFVQWGNTQVTAHGLGAYIAQTTAAGDFPKIILGIAVMSLFVTLFNRLLWRPLYVYAESKFRAN
>NZ_CP020943.2|WP_041457942.1|3895039_3895354_-|hypothetical-protein
MKNRVLVAFSLLALSGCSTMSSNEAIPPLQAETAKMLGLSSSDEITVTNVSATKPDTLGSQMLSYRATTDKGRIFDCQSQMIPGILGQEPVVTVPKCTPVKVHN
>NZ_CP020943.2|WP_104933139.1|3895745_3896705_+|hypothetical-protein
MALPGQSSNNLPDYNIARRLGMVSADDIDFTALANRLDCTRDFSQVGIIYSDGLAQWLVRPSRRHAQASKSSVSHVIITKVNATNPQVAAKALTETLSKPSLASEITSTMFSCGALVVTGFLAFGSAAAVPLTAGASGVVAGMIIAGGLATGMQCAIGTARLYAIYEGNEDYVAWLDSQSWYVATTTALDVISLAGAGAGLKSAIETYKVMKASSSAKAFEWLKTLSRAERKRITEEIIRAQNPGISNGGIKAAMKAGVYPKRYPAEAIQKSLQRELTSALVNSSAFAGSALTGTLRNPQNIVQSGKYVIGVIQSLSST
>NZ_CP020943.2|WP_014606662.1|3896714_3897311_+|hypothetical-protein
MKYINKIIKLSEKTNKKIEVSGVDELENIKDDMKEKMGMPIGLHTFGAPLIISMVLTVISFSLPQFSFWLFIYDLMGWEQHAVFIGIIAAAFIYVLVLFTTMMMVSRGIYLALRAYIFILILALITALFFLLITMISSISGNNNYSLSFTGALLSIGLSLIALKCLNSEMFYKSCAFILHNRAWRKQLDLQRKTTAFR
>NZ_CP020943.2|WP_104933138.1|3897732_3898569_+|5-dehydro-4-deoxy-D-glucuronate-isomerase
MEVRQSIHSAHANALDTQGLRDEFLIEKIFVPDEFTMVYSHIDRIIVGGVMPVGQAVAIGNDVGKQLGVSYFLERRELGMINIGGPGQVTIDGEDYEIGHREALYIGKGAREVLFSSLAPHCPAKFYYNCAPAHKTLPIRKVTAADAAAVTLGDNLTSNRRTINKYLVPDVLETCQLSMGLTQLEPGNLWNTMPCHTHERRMEVYLYFDMDDDACVFHMMGEPQETRHLLVHNEQAVISPAWSIHSGVGTKAYTFIWGTVGENQVFDDMDHVSVKDLR
>NZ_CP020943.2|WP_014606664.1|3898624_3899386_+|2-dehydro-3-deoxy-D-gluconate-5-dehydrogenase-KduD
MILNAFSLQDKIAVVSGCNTGLGQAMALGLAEAGCNIVGINQVEPDETIKQVTALGRRFLSLKADLRNIDAIPALLDSAIACFDRIDILVNNAGMIRREDAINFSEQDWDDVMDLNIKSLFFMSQAAARHFIAQGDGGKIINIASMLSFQGGIRVPSYTASKSGVMGITRLLANEWAKHRINVNAIAPGYMATDNTQQLRADAQRSAEILDRIPAGRWGKPEDLMGPVVFLASRASDYMNGYTIAVDGGWLAR
>NZ_CP020943.2|WP_088900685.1|3899816_3900896_+|glycoside-hydrolase-105-family-protein
MELLSTARQLDLLLNGFTQLKDEGKFNEPNIDGTAGDYISFAHWEWPQGVGLFGLVRLWELTRRDDIYQIIENWFQQNIQKGLPPLNINTTAPMLPLSLLWAHNRAPHYQAVLDSWADRVMTELPRTPEQGFQHVVSDGINPMEIWDDTLFMVVLFLGHYGVASGRQALVDEAVRQFLLHARYLNDPQTGLWFHGWSFAEKSHFAQARWARGNAWITVGIIEFLELTQLRGGVRDYLLECLKTQINSLITLQSESGAWHTLLDHPDSYEEISATAGFGYGLLKGVRLGYGDERWLQAGLQALGAVRRNIDSSGTVHNVSYGTRMGRTLQFYKDIPLQPTGYGQALAILCLTEGLRHLKK
>NZ_CP020943.2|WP_104933137.1|3900925_3903415_+|hypothetical-protein
MDQNHYCYFPLNQNEAVRYWQLSAISSQRYDVPNAPMSGEMDPFFFLSQHKNFIPHTYPCRTQFQQHYAGKKPTPFGDTTLKNWWFPFGSDRVDLSGFWFRATRIGAQAETCLVAEQRGLYRFRLTTCGAACITLNGGDVAWQADYQRNLESTVEFALMLDAGVNAIAVWFDDLAERDVRFFFQLDYVEGAPLQVALATPIEADRVRQMEALLEGMAFEQPTYTGGTVRLCFPIPAPETLNLNIRVQGDFISLDQPVLLNAVLHQGETVAEIAESDALPADFRHFVISMEKDNFHIRRTLGVEICHAEQQAQVPKTADARADEALMHVALHGEYSSVKALARLACGRDDTETQNMLEGVLTPVEDCHDCADFTLVPLLWCRIQWADRIAAPVREKMDRAILAFRYWMDEPGNDVQWYFSENHALLFHTAAYLAGSTFPDKTFVRSGRLGSDQAEAGRQRVLAWLDHFEQCEMAEWNSAPYFPIDLKGLTALAALAPDADIVARSQRAILRLLEQIARSSHQGMLTASQGRSYEHTLRAGRSLELSAISRLLWGKGNVGCRFHALPQLALLLKQGKLTHSPELAKVAVWRGDSALEWYFAQGLNRIARLYHYKTRDVAMGSLAGYRWGEWGYQETPIHLRIGETPEAQIWINHPGERLHSGFGRPYYWGGCGTLPRVQQYRGLAIVLFRVHEGQPDFSHAWLPQRYFDDVRCYDKRILLRSGKGMVQISGNRAFQRIAHGPTQHCEVRLPGQETCWLIRLNDDPRLDNLADFEARFAQLTVERREDGTFYVNDPQYGEVFFQPNGCVFGQGRLLDPDSWTISGDSHELPL
>NZ_CP020943.2|WP_019105049.1|3903570_3904911_-|aspartate-aminotransferase-family-protein
MTVRSTIMDTNSFRAENAEALAPAIRQLTDKRSKVLGESYRLFYRNPVHLVRGQGQYLWDQAGKQYLDMYNNVASIGHCHPAVVEAVHQQMMRLNTHTRYLHESILDYSERILATMPAAIDRAMYMCTGSEANDLAIRMAHAWSGGTGIIVSKEAYHGTSALTSGVSPALGSGQPLSSHTRLVASPDFYRIQPADQGAWFAHEIQKQIDDMAAHGIKFAGFLADSIFSSDGVLPGQPGFLKQAIDVVHQNGGIFIADEVQPGFARTGESFWGFARHGVVPDVVTTGKPMGNGIPVSGLMAKAPVMAAFSDSLPYFNTFGGNPVSMAAAHAVMDVIEQESLQAHSLKTGQALLAALQSLQDTYACVGDVRGAGLFIGFELVTDRETKQPDKRLALDLVEALREECVLTSVAGPYGNVLKIRPPLCFQTHDIDWVVSAMDRCLKKLHG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP020943_1	1.1\|3888902\|25\|NZ_CP020943\|CRISPRCasFinder	3888902-3888926	25	NZ_CP020943.2	3888614-3888638	0	1.0
NZ_CP020943_1	1.24\|3890006\|25\|NZ_CP020943\|CRISPRCasFinder	3890006-3890030	25	NZ_CP020943.2	3887414-3887438	0	1.0
NZ_CP020943_1	1.2\|3888950\|25\|NZ_CP020943\|CRISPRCasFinder	3888950-3888974	25	NZ_CP020943.2	3888662-3888686	1	0.96
NZ_CP020943_1	1.18\|3889718\|25\|NZ_CP020943\|CRISPRCasFinder	3889718-3889742	25	NZ_CP020943.2	3887414-3887438	2	0.92

1. spacer 1.1|3888902|25|NZ_CP020943|CRISPRCasFinder matches to position: 3888614-3888638, mismatch: 0, identity: 1.0

cgtcagcacactctgttcgcgcgcc	CRISPR spacer
cgtcagcacactctgttcgcgcgcc	Protospacer
*************************

2. spacer 1.24|3890006|25|NZ_CP020943|CRISPRCasFinder matches to position: 3887414-3887438, mismatch: 0, identity: 1.0

gatcagggagctgtcggcgcccgcc	CRISPR spacer
gatcagggagctgtcggcgcccgcc	Protospacer
*************************

3. spacer 1.2|3888950|25|NZ_CP020943|CRISPRCasFinder matches to position: 3888662-3888686, mismatch: 1, identity: 0.96

cgtcaggctactgtgataactggcg	CRISPR spacer
cgtcaggctactgtgatagctggcg	Protospacer
******************.******

4. spacer 1.18|3889718|25|NZ_CP020943|CRISPRCasFinder matches to position: 3887414-3887438, mismatch: 2, identity: 0.92

gatcagggagctgtcgtcacccgcc	CRISPR spacer
gatcagggagctgtcggcgcccgcc	Protospacer
**************** *.******

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP020943_1	1.5\|3889094\|25\|NZ_CP020943\|CRISPRCasFinder	3889094-3889118	25	NC_015465	Synechococcus phage S-CBS3, complete genome	16068-16092	3	0.88
NZ_CP020943_1	1.10\|3889334\|25\|NZ_CP020943\|CRISPRCasFinder	3889334-3889358	25	NZ_CP048425	Rhizobium daejeonense strain KACC 13094 plasmid unnamed2, complete sequence	220598-220622	3	0.88
NZ_CP020943_1	1.18\|3889718\|25\|NZ_CP020943\|CRISPRCasFinder	3889718-3889742	25	NZ_CP016082	Streptomyces sp. SAT1 plasmid unnamed2, complete sequence	16052-16076	3	0.88
NZ_CP020943_1	1.18\|3889718\|25\|NZ_CP020943\|CRISPRCasFinder	3889718-3889742	25	NC_003276	Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence	303458-303482	3	0.88
NZ_CP020943_1	1.18\|3889718\|25\|NZ_CP020943\|CRISPRCasFinder	3889718-3889742	25	NC_003276	Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence	304756-304780	3	0.88
NZ_CP020943_1	1.18\|3889718\|25\|NZ_CP020943\|CRISPRCasFinder	3889718-3889742	25	NC_003276	Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence	305416-305440	3	0.88
NZ_CP020943_1	1.4\|3889046\|25\|NZ_CP020943\|CRISPRCasFinder	3889046-3889070	25	NZ_CP028972	Aminobacter sp. MSH1 plasmid pUSP4, complete sequence	38380-38404	4	0.84
NZ_CP020943_1	1.6\|3889142\|25\|NZ_CP020943\|CRISPRCasFinder	3889142-3889166	25	NC_047783	Klebsiella phage vB_KpnP_KpV48, complete genome	3937-3961	4	0.84
NZ_CP020943_1	1.11\|3889382\|25\|NZ_CP020943\|CRISPRCasFinder	3889382-3889406	25	NZ_CP023017	Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence	1413015-1413039	4	0.84
NZ_CP020943_1	1.13\|3889478\|25\|NZ_CP020943\|CRISPRCasFinder	3889478-3889502	25	MN484601	Gordonia phage Sixama, complete genome	4322-4346	4	0.84
NZ_CP020943_1	1.16\|3889622\|25\|NZ_CP020943\|CRISPRCasFinder	3889622-3889646	25	NZ_CP048425	Rhizobium daejeonense strain KACC 13094 plasmid unnamed2, complete sequence	220598-220622	4	0.84
NZ_CP020943_1	1.17\|3889670\|25\|NZ_CP020943\|CRISPRCasFinder	3889670-3889694	25	NZ_CP029777	Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence	410392-410416	4	0.84
NZ_CP020943_1	1.19\|3889766\|25\|NZ_CP020943\|CRISPRCasFinder	3889766-3889790	25	MN484601	Gordonia phage Sixama, complete genome	4322-4346	4	0.84
NZ_CP020943_1	1.22\|3889910\|25\|NZ_CP020943\|CRISPRCasFinder	3889910-3889934	25	NZ_CP048425	Rhizobium daejeonense strain KACC 13094 plasmid unnamed2, complete sequence	220598-220622	4	0.84
NZ_CP020943_1	1.22\|3889910\|25\|NZ_CP020943\|CRISPRCasFinder	3889910-3889934	25	MK290737	Pectobacterium phage Arno162, complete genome	39073-39097	4	0.84
NZ_CP020943_1	1.22\|3889910\|25\|NZ_CP020943\|CRISPRCasFinder	3889910-3889934	25	MN270892	Pectobacterium phage Wc4-1, complete genome	70859-70883	4	0.84
NZ_CP020943_1	1.22\|3889910\|25\|NZ_CP020943\|CRISPRCasFinder	3889910-3889934	25	MN270891	Pectobacterium phage Wc4, complete genome	70859-70883	4	0.84
NZ_CP020943_1	1.23\|3889958\|25\|NZ_CP020943\|CRISPRCasFinder	3889958-3889982	25	NZ_CP029777	Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence	410392-410416	4	0.84
NZ_CP020943_1	1.24\|3890006\|25\|NZ_CP020943\|CRISPRCasFinder	3890006-3890030	25	HQ225832	Tetrasphaera phage TJE1, complete genome	8414-8438	4	0.84
NZ_CP020943_1	1.7\|3889190\|25\|NZ_CP020943\|CRISPRCasFinder	3889190-3889214	25	NC_021909	Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1e, complete sequence	540938-540962	5	0.8
NZ_CP020943_1	1.7\|3889190\|25\|NZ_CP020943\|CRISPRCasFinder	3889190-3889214	25	NZ_CP049244	Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence	380738-380762	5	0.8
NZ_CP020943_1	1.25\|3890054\|25\|NZ_CP020943\|CRISPRCasFinder	3890054-3890078	25	NZ_AP017656	Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete sequence	163595-163619	5	0.8

1. spacer 1.5|3889094|25|NZ_CP020943|CRISPRCasFinder matches to NC_015465 (Synechococcus phage S-CBS3, complete genome) position: , mismatch: 3, identity: 0.88

cgttagcacactgttgtagctggct	CRISPR spacer
cgttagcacgctgttgtagttggca	Protospacer
*********.*********.****

2. spacer 1.10|3889334|25|NZ_CP020943|CRISPRCasFinder matches to NZ_CP048425 (Rhizobium daejeonense strain KACC 13094 plasmid unnamed2, complete sequence) position: , mismatch: 3, identity: 0.88

cgtaagatcgctgcccttctgcgcg	CRISPR spacer
ccgaagatcgctgcccttcagcgcg	Protospacer
*  **************** *****

3. spacer 1.18|3889718|25|NZ_CP020943|CRISPRCasFinder matches to NZ_CP016082 (Streptomyces sp. SAT1 plasmid unnamed2, complete sequence) position: , mismatch: 3, identity: 0.88

gatcagggagctgtcgtcacccgcc	CRISPR spacer
gctcagggagccgtcgtcaccggcc	Protospacer
* *********.********* ***

4. spacer 1.18|3889718|25|NZ_CP020943|CRISPRCasFinder matches to NC_003276 (Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence) position: , mismatch: 3, identity: 0.88

gatcagggagctgtcgtcacccgcc	CRISPR spacer
gttcagggaactctcgtcacccgcc	Protospacer
* *******.** ************

5. spacer 1.18|3889718|25|NZ_CP020943|CRISPRCasFinder matches to NC_003276 (Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence) position: , mismatch: 3, identity: 0.88

gatcagggagctgtcgtcacccgcc	CRISPR spacer
gttcagggaactctcgtcacccgcc	Protospacer
* *******.** ************

6. spacer 1.18|3889718|25|NZ_CP020943|CRISPRCasFinder matches to NC_003276 (Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence) position: , mismatch: 3, identity: 0.88

gatcagggagctgtcgtcacccgcc	CRISPR spacer
gttcagggaactctcgtcacccgcc	Protospacer
* *******.** ************

7. spacer 1.4|3889046|25|NZ_CP020943|CRISPRCasFinder matches to NZ_CP028972 (Aminobacter sp. MSH1 plasmid pUSP4, complete sequence) position: , mismatch: 4, identity: 0.84

agtgaggtcactgccttctctcgcc	CRISPR spacer
ggtcgtgtcactgccttctctcgcc	Protospacer
.** . *******************

8. spacer 1.6|3889142|25|NZ_CP020943|CRISPRCasFinder matches to NC_047783 (Klebsiella phage vB_KpnP_KpV48, complete genome) position: , mismatch: 4, identity: 0.84

gatcagtgaactatttgccccggct	CRISPR spacer
tttctttgaactatttgccccggct	Protospacer
  **  *******************

9. spacer 1.11|3889382|25|NZ_CP020943|CRISPRCasFinder matches to NZ_CP023017 (Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.84

tgtcagtgagctgtcttcgcccgcc	CRISPR spacer
gctcagtgagctgccatcgcccgcc	Protospacer
  ***********.* *********

10. spacer 1.13|3889478|25|NZ_CP020943|CRISPRCasFinder matches to MN484601 (Gordonia phage Sixama, complete genome) position: , mismatch: 4, identity: 0.84

cgtaaggtcgctgcccttctgcgcg	CRISPR spacer
attatggtcgccgcccttctgcgcg	Protospacer
  ** ******.*************

11. spacer 1.16|3889622|25|NZ_CP020943|CRISPRCasFinder matches to NZ_CP048425 (Rhizobium daejeonense strain KACC 13094 plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.84

agtaagatcgctgcccttctgcgcg	CRISPR spacer
ccgaagatcgctgcccttcagcgcg	Protospacer
   **************** *****

12. spacer 1.17|3889670|25|NZ_CP020943|CRISPRCasFinder matches to NZ_CP029777 (Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence) position: , mismatch: 4, identity: 0.84

tgtcagcgagctgtcttcgcccgcc	CRISPR spacer
cctcggcgagctgtcttcacccgcc	Protospacer
. **.*************.******

13. spacer 1.19|3889766|25|NZ_CP020943|CRISPRCasFinder matches to MN484601 (Gordonia phage Sixama, complete genome) position: , mismatch: 4, identity: 0.84

cgtaaggtcgctgcccttctgcgcg	CRISPR spacer
attatggtcgccgcccttctgcgcg	Protospacer
  ** ******.*************

14. spacer 1.22|3889910|25|NZ_CP020943|CRISPRCasFinder matches to NZ_CP048425 (Rhizobium daejeonense strain KACC 13094 plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.84

ggtaagatcgctgcccttctgcgcg	CRISPR spacer
ccgaagatcgctgcccttcagcgcg	Protospacer
   **************** *****

15. spacer 1.22|3889910|25|NZ_CP020943|CRISPRCasFinder matches to MK290737 (Pectobacterium phage Arno162, complete genome) position: , mismatch: 4, identity: 0.84

ggtaagatcgctgcccttctgcgcg	CRISPR spacer
ggtaagaccgctgcccttctgatgg	Protospacer
*******.*************   *

16. spacer 1.22|3889910|25|NZ_CP020943|CRISPRCasFinder matches to MN270892 (Pectobacterium phage Wc4-1, complete genome) position: , mismatch: 4, identity: 0.84

ggtaagatcgctgcccttctgcgcg	CRISPR spacer
ggtaagaccgctgcccttctgatgg	Protospacer
*******.*************   *

17. spacer 1.22|3889910|25|NZ_CP020943|CRISPRCasFinder matches to MN270891 (Pectobacterium phage Wc4, complete genome) position: , mismatch: 4, identity: 0.84

ggtaagatcgctgcccttctgcgcg	CRISPR spacer
ggtaagaccgctgcccttctgatgg	Protospacer
*******.*************   *

18. spacer 1.23|3889958|25|NZ_CP020943|CRISPRCasFinder matches to NZ_CP029777 (Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence) position: , mismatch: 4, identity: 0.84

tgtcagcgagctgtcttcgcccgcc	CRISPR spacer
cctcggcgagctgtcttcacccgcc	Protospacer
. **.*************.******

19. spacer 1.24|3890006|25|NZ_CP020943|CRISPRCasFinder matches to HQ225832 (Tetrasphaera phage TJE1, complete genome) position: , mismatch: 4, identity: 0.84

gatcagggagctgtcggcgcccgcc	CRISPR spacer
gatcaggtagctgtcggcgaccgaa	Protospacer
******* *********** ***

20. spacer 1.7|3889190|25|NZ_CP020943|CRISPRCasFinder matches to NC_021909 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1e, complete sequence) position: , mismatch: 5, identity: 0.8

gatgagatcgctttcgttctgcgcg	CRISPR spacer
acatagatcgctttcggtctgcgcg	Protospacer
.   ************ ********

21. spacer 1.7|3889190|25|NZ_CP020943|CRISPRCasFinder matches to NZ_CP049244 (Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence) position: , mismatch: 5, identity: 0.8

gatgagatcgctttcgttctgcgcg	CRISPR spacer
cgcgacatcgctttcgttctgcgct	Protospacer
 ..** ******************

22. spacer 1.25|3890054|25|NZ_CP020943|CRISPRCasFinder matches to NZ_AP017656 (Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete sequence) position: , mismatch: 5, identity: 0.8

ggtgagatcgctgcctttcatgccg	CRISPR spacer
gttgagatcgctgcctttcataatt	Protospacer
* *******************. .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

663793 : 722922

Salmonella_phage(44.44%)

terminase,tail,integrase,tRNA,head,portal,plate,lysis,capsid

attL 666648:666670|attR 692079:692101

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015699474.1\|663793_664378_-	phage repressor protein	A0A218M4J1	Erwinia_phage	2.5e-33	42.2
WP_104932945.1\|664801_665170_+	hypothetical protein	F1BUS4	Erwinia_phage	2.7e-38	57.5
WP_028715824.1\|665236_665455_+	DUF2732 family protein	F1BUS3	Erwinia_phage	1.0e-08	54.1
WP_014594660.1\|665454_665682_+	hypothetical protein	F1BUS2	Erwinia_phage	1.4e-13	50.0
WP_104932944.1\|665678_667742_+	replication endonuclease	F1BUS0	Erwinia_phage	7.7e-263	70.5
666648:666670	attL	NA	NA	NA	NA
WP_013027286.1\|667949_668174_+	hypothetical protein	F1BUR9	Erwinia_phage	2.6e-15	64.6
WP_104932943.1\|668867_669071_+\|tail	phage tail protein	F1BUQ5	Erwinia_phage	6.6e-26	79.1
WP_014604962.1\|669076_669301_+	hypothetical protein	F1BUQ4	Erwinia_phage	9.8e-31	82.4
WP_024471098.1\|669284_669794_+	lysozyme	E5G6N1	Salmonella_phage	3.6e-57	66.3
WP_015699480.1\|669790_670225_+	hypothetical protein	F1BUQ1	Erwinia_phage	2.5e-38	59.0
WP_168203635.1\|670314_670782_+\|tail	phage tail protein	F1BUP9	Erwinia_phage	2.8e-48	62.5
WP_013027279.1\|670874_671459_+\|plate	phage baseplate assembly protein V	F1BUP5	Erwinia_phage	9.9e-83	79.4
WP_013027278.1\|671455_671806_+\|plate	baseplate assembly protein	F1BUP4	Erwinia_phage	2.1e-48	81.9
WP_104932942.1\|671809_672718_+\|plate	baseplate assembly protein	F1BUP3	Erwinia_phage	1.6e-132	82.1
WP_104932941.1\|672710_673319_+\|tail	phage tail protein I	F1BUP2	Erwinia_phage	5.3e-95	82.7
WP_158639815.1\|674014_674161_+	hypothetical protein	NA	NA	NA	NA
WP_158639816.1\|674435_674588_+	hypothetical protein	NA	NA	NA	NA
WP_042677392.1\|674623_674842_+	hypothetical protein	NA	NA	NA	NA
WP_104932939.1\|675005_675194_-	hypothetical protein	NA	NA	NA	NA
WP_146109549.1\|675190_675469_-	hypothetical protein	NA	NA	NA	NA
WP_105082456.1\|675395_675914_+\|tail	tail fiber protein	K7PH60	Enterobacterial_phage	7.3e-29	45.0
WP_014594652.1\|675913_676510_+\|tail	tail assembly protein	A0A218M4J2	Erwinia_phage	3.9e-50	47.7
WP_148239979.1\|677158_677761_-\|tail	tail fiber protein	Q9MCR6	Enterobacteria_phage	6.7e-34	50.3
WP_104932938.1\|677753_678332_+	recombinase family protein	A0A1S6L009	Salmonella_phage	1.3e-71	77.2
WP_014594650.1\|678412_679582_+\|tail	phage tail sheath protein	F1BUU3	Erwinia_phage	3.3e-202	89.7
WP_013027271.1\|679594_680107_+\|tail	phage major tail tube protein	F1BUU2	Erwinia_phage	3.3e-82	85.3
WP_013027270.1\|680161_680458_+\|tail	phage tail assembly protein	F1BUU0	Erwinia_phage	6.0e-28	72.2
WP_013027268.1\|680490_680613_+\|tail	GpE family phage tail protein	Q858U8	Yersinia_virus	7.4e-09	61.5
WP_104932937.1\|680605_682852_+\|tail	phage tail tape measure protein	S4TP64	Salmonella_phage	9.1e-68	41.5
WP_013027266.1\|682858_683362_+\|tail	phage tail protein	F1BUT6	Erwinia_phage	9.8e-55	73.8
WP_104932936.1\|683363_684521_+	hypothetical protein	A0A0M5M5V5	Salmonella_phage	1.6e-79	42.7
WP_014604972.1\|684594_684816_+	late control protein ogr/delta	F1BUT0	Erwinia_phage	8.2e-22	68.1
WP_104932935.1\|685193_685724_-	hypothetical protein	NA	NA	NA	NA
WP_096011888.1\|685861_686053_+	toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_104933739.1\|686674_687688_-\|integrase	tyrosine-type recombinase/integrase	F1BUS9	Erwinia_phage	3.1e-116	60.5
WP_104933738.1\|687693_688305_-	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	5.6e-36	40.6
WP_072404490.1\|688395_688632_+	regulator	NA	NA	NA	NA
WP_104933737.1\|688666_689176_+	phage regulatory CII family protein	F1BUS6	Erwinia_phage	1.3e-62	73.4
WP_104933736.1\|689186_689366_+	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	1.7e-09	48.2
WP_104933735.1\|689367_689751_+	hypothetical protein	F1BUS4	Erwinia_phage	1.6e-41	68.9
WP_039342011.1\|689822_690050_+	DUF2732 domain-containing protein	NA	NA	NA	NA
WP_104933734.1\|690049_690277_+	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	1.9e-18	61.3
WP_104933733.1\|690273_691110_+	DNA adenine methylase	A0A1S6L011	Salmonella_phage	1.1e-87	60.6
WP_104933732.1\|691106_693395_+	replication protein	F1BUS0	Erwinia_phage	0.0e+00	77.5
692079:692101	attR	NA	NA	NA	NA
WP_104933731.1\|693477_693666_+	hypothetical protein	E5G6M0	Salmonella_phage	8.5e-20	76.7
WP_104933730.1\|693680_693914_+	DinI family protein	A0A0M4S6H1	Salmonella_phage	1.7e-25	74.0
WP_104933792.1\|694024_695047_+	DNA cytosine methyltransferase	A0A0R6PG08	Moraxella_phage	1.6e-115	60.2
WP_158639817.1\|695073_695754_-	hypothetical protein	A0A0R6PER3	Moraxella_phage	4.0e-19	32.9
WP_104933729.1\|695755_696898_-	DUF262 domain-containing protein	A0A0R6PKN1	Moraxella_phage	6.3e-73	42.8
WP_104933790.1\|697298_697760_+	hypothetical protein	A0A218M4J4	Erwinia_phage	9.4e-12	34.2
WP_104933728.1\|697753_698053_+	DUF1493 family protein	NA	NA	NA	NA
WP_104933727.1\|698535_699162_-	hypothetical protein	NA	NA	NA	NA
WP_104933726.1\|699310_700360_-\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	3.0e-162	79.9
WP_104933725.1\|700359_702126_-\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	2.2e-306	85.0
WP_104933724.1\|702270_703122_+\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	9.0e-85	62.2
WP_104933789.1\|703166_704360_+\|capsid	phage major capsid protein, P2 family	A0A1S6KZZ3	Salmonella_phage	4.3e-133	67.2
WP_104933723.1\|704363_705008_+	hypothetical protein	E5G6M7	Salmonella_phage	8.9e-85	74.1
WP_104933722.1\|705105_705570_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	4.6e-59	71.4
WP_013027024.1\|705569_705773_+\|tail	tail protein X	E5G6M9	Salmonella_phage	3.1e-28	83.6
WP_014605001.1\|705776_705989_+	hypothetical protein	E5G6N0	Salmonella_phage	9.9e-17	60.3
WP_014605002.1\|705969_706485_+	lysozyme	E5G6N1	Salmonella_phage	1.1e-74	79.9
WP_104933721.1\|706481_706913_+\|lysis	LysB family phage lysis regulatory protein	E5G6N2	Salmonella_phage	6.5e-31	52.1
WP_104933720.1\|707008_707440_+\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	2.4e-54	72.7
WP_104933719.1\|707432_707876_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	8.4e-42	61.5
WP_104933718.1\|707887_709345_-	hypothetical protein	NA	NA	NA	NA
WP_104933717.1\|709420_709999_+\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	2.0e-67	67.5
WP_104933716.1\|709998_710352_+\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	2.5e-36	59.0
WP_104933715.1\|710338_711253_+\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	4.3e-101	64.0
WP_104933714.1\|711249_711861_+\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	5.0e-85	73.4
WP_104933713.1\|714153_714636_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	3.6e-54	69.2
WP_104933712.1\|714635_715736_+	phage late control D family protein	E5G6Q3	Salmonella_phage	3.3e-148	73.5
WP_104933711.1\|715796_716015_+	transcriptional regulator	Q53ZE7	Salmonella_virus	1.4e-21	70.1
WP_024471056.1\|716556_717072_+	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
WP_013027259.1\|717144_718989_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.9e-34	33.3
WP_014594644.1\|719552_721298_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	8.1e-72	37.3
WP_001144069.1\|721414_721630_-	30S ribosomal protein S21	NA	NA	NA	NA
WP_013027257.1\|721908_722922_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	5.0e-106	58.0

DBSCAN-SWA_2

1209362 : 1254401

uncultured_Caudovirales_phage(32.0%)

tail,head,lysis,holin,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_104933612.1\|1209362_1210565_-	DUF3596 domain-containing protein	I6PDJ1	Cronobacter_phage	2.1e-151	66.8
WP_024471313.1\|1210522_1210729_-	hypothetical protein	I6PBM8	Cronobacter_phage	1.1e-23	77.4
WP_104933611.1\|1210725_1212708_-	DNA cytosine methyltransferase	H9C171	Pectobacterium_phage	2.4e-205	51.1
WP_104933610.1\|1212704_1214036_-	phage N-6-adenine-methyltransferase	Q8SBE9	Shigella_phage	1.2e-83	66.3
WP_104933609.1\|1214513_1214795_-	hypothetical protein	NA	NA	NA	NA
WP_104933608.1\|1215015_1215402_-	hypothetical protein	NA	NA	NA	NA
WP_104933607.1\|1215391_1216006_-	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	1.5e-65	72.9
WP_104933784.1\|1216005_1216323_-	hypothetical protein	A0A222YY67	Escherichia_phage	3.6e-31	54.5
WP_104933606.1\|1216781_1217072_-	hypothetical protein	S4TU79	Salmonella_phage	6.5e-19	49.5
WP_104933605.1\|1217064_1217598_-	hypothetical protein	A0A2D1GNL9	Pseudomonas_phage	9.7e-53	62.6
WP_104933604.1\|1217682_1218378_-	hypothetical protein	A0A088C400	Shewanella_sp._phage	1.9e-24	38.6
WP_015700102.1\|1218377_1219043_-	ATP-binding protein	G9L667	Escherichia_phage	2.9e-70	59.9
WP_104933603.1\|1219044_1219713_-	exodeoxyribonuclease X	A0A1W5PTR6	Pseudoalteromonas_phage	1.3e-22	35.3
WP_024471305.1\|1219681_1219891_-	hypothetical protein	NA	NA	NA	NA
WP_104933602.1\|1220012_1220417_-	hypothetical protein	NA	NA	NA	NA
WP_104933601.1\|1221416_1222100_-	helix-turn-helix domain-containing protein	A0A2H4FNG6	Salmonella_phage	3.0e-14	44.4
WP_104933600.1\|1222138_1222375_+	helix-turn-helix domain-containing protein	A0A2D1GLN0	Escherichia_phage	2.4e-19	68.1
WP_014605612.1\|1222387_1222690_+	hypothetical protein	I6PCV6	Cronobacter_phage	1.6e-12	46.7
WP_104933599.1\|1222682_1222868_+	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_158639819.1\|1222926_1223079_+	hypothetical protein	NA	NA	NA	NA
WP_104933783.1\|1223071_1224136_+	replication protein	A0A0N7KZ97	Stx2-converting_phage	1.1e-58	42.7
WP_104933598.1\|1224128_1225517_+	replicative DNA helicase	K7P852	Enterobacteria_phage	4.8e-128	55.4
WP_168203637.1\|1225516_1225873_+	RusA family crossover junction endodeoxyribonuclease	K7P6W0	Enterobacteria_phage	7.2e-44	68.7
WP_168203628.1\|1225911_1226763_+	antitermination protein	M9NZB0	Enterobacteria_phage	9.7e-71	52.0
WP_104933596.1\|1226943_1227504_+	hypothetical protein	B5WZS6	Pseudomonas_phage	1.3e-42	46.0
WP_104933781.1\|1228499_1228943_+	methyltransferase domain-containing protein	H2BDB7	Pseudomonas_virus	1.9e-38	49.7
WP_014605618.1\|1229084_1229438_+\|holin	holin	NA	NA	NA	NA
WP_168203638.1\|1229443_1229926_+	lysozyme	A0A1W6JP42	Morganella_phage	1.7e-43	57.1
WP_104933595.1\|1229922_1230423_+\|lysis	lysis protein	M1FJ79	Enterobacteria_phage	1.6e-28	52.0
WP_104933594.1\|1230427_1230685_+	hypothetical protein	NA	NA	NA	NA
WP_104933593.1\|1230738_1230918_+	hypothetical protein	NA	NA	NA	NA
WP_104933592.1\|1231006_1231270_+	hypothetical protein	NA	NA	NA	NA
WP_104933591.1\|1231313_1231499_+	hypothetical protein	NA	NA	NA	NA
WP_104933590.1\|1231500_1232118_+	hypothetical protein	F1C5D5	Cronobacter_phage	5.2e-90	74.9
WP_104933589.1\|1232148_1232622_+	DUF2280 domain-containing protein	I6S1P9	Salmonella_phage	5.8e-49	75.2
WP_104933588.1\|1232826_1234437_+	TerL protein	A0A0M5M1R6	Salmonella_phage	7.7e-295	89.1
WP_104933587.1\|1234447_1235917_+	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	5.5e-223	77.7
WP_104933586.1\|1235876_1236626_+\|capsid	minor capsid protein	A0A0M4REK0	Salmonella_phage	1.2e-80	73.0
WP_104933585.1\|1236655_1237882_+	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	7.0e-147	67.6
WP_104933584.1\|1237891_1238389_+	hypothetical protein	A0A0M4QWZ6	Salmonella_phage	1.7e-59	71.8
WP_089517277.1\|1238398_1239340_+	DUF2184 domain-containing protein	A0A0M3ULD3	Salmonella_phage	1.0e-153	84.3
WP_104933583.1\|1239383_1239719_+	hypothetical protein	NA	NA	NA	NA
WP_089517279.1\|1239720_1240128_+	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	2.5e-56	77.8
WP_089517280.1\|1240124_1240673_+	hypothetical protein	A0A0M4S631	Salmonella_phage	1.4e-59	69.6
WP_104933582.1\|1240659_1241046_+\|head,tail	head-tail adaptor	A0A2H4J1A4	uncultured_Caudovirales_phage	1.9e-45	71.7
WP_104933581.1\|1241035_1241581_+	hypothetical protein	A0A2H4J1A0	uncultured_Caudovirales_phage	2.4e-70	65.7
WP_104933580.1\|1241584_1242730_+	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	2.4e-157	71.9
WP_029570460.1\|1242740_1243181_+	DUF3277 family protein	A0A2H4J619	uncultured_Caudovirales_phage	6.8e-60	76.0
WP_104933579.1\|1243184_1243637_+	hypothetical protein	A0A2H4J2V6	uncultured_Caudovirales_phage	1.9e-41	62.7
WP_022623532.1\|1243672_1243822_+	hypothetical protein	A0A2H4J1A2	uncultured_Caudovirales_phage	3.4e-16	79.6
WP_104933578.1\|1243818_1245837_+	transglycosylase SLT domain-containing protein	A0A2H4J9N7	uncultured_Caudovirales_phage	1.7e-238	63.9
WP_104933577.1\|1245836_1246403_+	hypothetical protein	A0A2H4J1B3	uncultured_Caudovirales_phage	4.6e-61	66.5
WP_104933576.1\|1246411_1246717_+	hypothetical protein	A0A2H4J495	uncultured_Caudovirales_phage	1.1e-32	65.3
WP_104933575.1\|1246719_1247781_+	hypothetical protein	A0A2H4J1B2	uncultured_Caudovirales_phage	2.1e-147	72.6
WP_104933574.1\|1247780_1248119_+	hypothetical protein	A0A2H4J1A5	uncultured_Caudovirales_phage	1.1e-30	59.8
WP_104933573.1\|1248233_1248767_+	hypothetical protein	NA	NA	NA	NA
WP_104933572.1\|1248763_1249000_+	hypothetical protein	NA	NA	NA	NA
WP_104933571.1\|1249011_1249371_+	hypothetical protein	NA	NA	NA	NA
WP_104933570.1\|1249426_1250083_+	translation initiation factor IF-2	A0A2H4J8H6	uncultured_Caudovirales_phage	2.2e-75	59.1
WP_104933569.1\|1250079_1250433_+	hypothetical protein	A0A2H4J629	uncultured_Caudovirales_phage	7.9e-51	83.8
WP_104933568.1\|1250432_1251632_+	hypothetical protein	A0A2H4J5T1	uncultured_Caudovirales_phage	6.4e-161	73.9
WP_104933567.1\|1251628_1252309_+	DUF2612 domain-containing protein	A0A2H4J1A9	uncultured_Caudovirales_phage	2.9e-102	80.2
WP_104933566.1\|1252308_1252914_+	hypothetical protein	A0A2H4IYR0	uncultured_Caudovirales_phage	1.4e-18	62.9
WP_104933565.1\|1252923_1253322_+\|tail	tail assembly chaperone	F1BUK2	Cronobacter_phage	3.3e-13	47.2
WP_013026784.1\|1253918_1254401_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	1.2e-28	46.8

DBSCAN-SWA_3

1735856 : 1742674

Tupanvirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014594076.1\|1735856_1736753_+	UTP--glucose-1-phosphate uridylyltransferase GalF	A0A127AW70	Bacillus_phage	6.7e-46	40.1
WP_019106525.1\|1736798_1737812_+	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	3.5e-75	43.7
WP_104933492.1\|1738243_1739314_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	8.7e-101	52.2
WP_104933491.1\|1739325_1740201_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	5.2e-112	67.0
WP_104933490.1\|1740226_1741165_+	NAD-dependent epimerase/dehydratase family protein	L7RCI0	Acanthamoeba_polyphaga_moumouvirus	6.4e-15	25.5
WP_104933489.1\|1741166_1741934_+	ABC transporter permease	NA	NA	NA	NA
WP_104933488.1\|1741933_1742674_+	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	3.5e-08	28.2

DBSCAN-SWA_4

2620402 : 2634149

Pandoravirus(11.11%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013025587.1\|2620402_2621449_+	3-deoxy-7-phosphoheptulonate synthase	A0A0B5IW14	Pandoravirus	3.0e-82	47.9
WP_072138718.1\|2621450_2622887_-	YdiU family protein	NA	NA	NA	NA
WP_014593597.1\|2622977_2623712_-	EAL domain-containing protein	NA	NA	NA	NA
WP_013025584.1\|2624004_2624463_-	endopeptidase	A0A217EQL1	Bacillus_phage	5.5e-12	38.4
WP_013025583.1\|2624529_2625279_-	vitamin B12 ABC transporter ATP-binding protein BtuD	NA	NA	NA	NA
WP_013025582.1\|2625279_2625825_-	glutathione peroxidase	A0A1S7DM81	Molluscum_contagiosum_virus	1.8e-14	40.7
WP_104933345.1\|2625858_2626860_-	vitamin B12 ABC transporter permease BtuC	A0A2H4IY97	uncultured_Caudovirales_phage	8.0e-16	27.7
WP_006118960.1\|2626959_2627262_-	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	5.6e-13	40.0
WP_014593594.1\|2627266_2629654_-\|tRNA	phenylalanine--tRNA ligase subunit beta	A0A1L3IZU3	BeAn_58058_virus	4.6e-09	30.9
WP_013025578.1\|2629668_2630652_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	1.4e-33	42.1
WP_106120997.1\|2630800_2630845_-	pheST operon leader peptide PheM	NA	NA	NA	NA
WP_006118956.1\|2630966_2631323_-	50S ribosomal protein L20	NA	NA	NA	NA
WP_004157374.1\|2631367_2631565_-	50S ribosomal protein L35	NA	NA	NA	NA
WP_026020952.1\|2631665_2632217_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	4.9e-15	31.8
WP_014593593.1\|2632220_2634149_-\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	3.1e-125	36.8

DBSCAN-SWA_5

3330166 : 3349324

Salmonella_phage(35.29%)

terminase,tail,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_104933245.1\|3330166_3330403_-	DUF4282 domain-containing protein	A0A077KGV8	Edwardsiella_phage	3.2e-08	46.2
WP_013024953.1\|3330469_3330703_-\|terminase	terminase small subunit	A0A1W6JNT5	Morganella_phage	1.1e-19	66.2
WP_024471185.1\|3330723_3331161_+	hypothetical protein	NA	NA	NA	NA
WP_104933243.1\|3331933_3333053_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	3.3e-50	42.0
WP_104933242.1\|3333088_3333652_-	hypothetical protein	I6R9B3	Salmonella_phage	3.7e-50	74.8
WP_104933241.1\|3334129_3334483_-\|tail	phage tail protein	H6WRV8	Salmonella_phage	5.1e-42	72.6
WP_104933765.1\|3334494_3336795_-	tape measure protein	H6WRV7	Salmonella_phage	8.7e-98	37.8
WP_104933240.1\|3337206_3337545_-	hypothetical protein	A0A222YZ97	Escherichia_phage	5.3e-28	56.4
WP_104933239.1\|3337549_3338005_-	hypothetical protein	NA	NA	NA	NA
WP_104933238.1\|3338088_3338418_-	hypothetical protein	NA	NA	NA	NA
WP_104933236.1\|3338835_3339723_-	hypothetical protein	NA	NA	NA	NA
WP_104933235.1\|3339764_3340652_-	hypothetical protein	A0A1V0E5Q3	Salmonella_phage	3.5e-63	85.8
WP_028715195.1\|3340635_3341082_-	ubiquitin carboxyl-hydrolase	Q716H4	Shigella_phage	7.9e-48	75.6
WP_104933234.1\|3341155_3341608_+	hypothetical protein	NA	NA	NA	NA
WP_050442525.1\|3341859_3342222_+	hypothetical protein	NA	NA	NA	NA
WP_028715198.1\|3342247_3342514_-	hypothetical protein	NA	NA	NA	NA
WP_104933233.1\|3342655_3343177_-	DNA-binding protein	H6WRZ8	Salmonella_phage	6.5e-94	93.0
WP_168203631.1\|3343373_3343544_-	hypothetical protein	NA	NA	NA	NA
WP_104933232.1\|3343540_3343720_-	hypothetical protein	K7PM01	Enterobacterial_phage	2.6e-10	67.4
WP_168203632.1\|3343682_3343952_-	hypothetical protein	NA	NA	NA	NA
WP_104933231.1\|3343948_3344203_-	hypothetical protein	S4TWQ5	Salmonella_phage	6.3e-10	50.0
WP_104933230.1\|3344202_3344670_-	glycoside hydrolase family protein	H9C148	Vibrio_phage	1.1e-23	40.7
WP_104933229.1\|3344666_3344972_-	hypothetical protein	NA	NA	NA	NA
WP_058706846.1\|3344955_3345351_-	hypothetical protein	NA	NA	NA	NA
WP_104933228.1\|3345540_3346386_-	hypothetical protein	NA	NA	NA	NA
WP_104933227.1\|3346597_3347221_-	hypothetical protein	A0A2H4JCH5	uncultured_Caudovirales_phage	1.0e-106	92.7
WP_104933226.1\|3347332_3347695_-	RusA family crossover junction endodeoxyribonuclease	A0A2H4J472	uncultured_Caudovirales_phage	5.8e-57	91.6
WP_104933225.1\|3347691_3347982_-	DUF1364 domain-containing protein	A0A2H4JIC4	uncultured_Caudovirales_phage	3.5e-49	95.8
WP_158639834.1\|3347974_3348148_-	hypothetical protein	NA	NA	NA	NA
WP_104933223.1\|3348250_3348460_-	hypothetical protein	NA	NA	NA	NA
WP_104933221.1\|3348862_3349324_-	recombination protein NinB	Q8VNP6	Enterobacteria_phage	3.0e-42	56.2

DBSCAN-SWA_6

3525881 : 3535953

Streptococcus_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_104933195.1\|3525881_3526793_-	lipid A hydroxylase LpxO	H8ZJK8	Ostreococcus_tauri_virus	3.0e-33	35.8
WP_015700885.1\|3527094_3528843_-	phage EPS-depolymerase	A0A1S6L3G8	Erwinia_phage	9.7e-158	46.9
WP_013024790.1\|3529042_3529333_-	hypothetical protein	NA	NA	NA	NA
WP_104933194.1\|3529329_3529677_-	hypothetical protein	A0A286N2Q7	Klebsiella_phage	1.1e-17	46.2
WP_104933193.1\|3529673_3530141_-	lysozyme	H9C148	Vibrio_phage	3.9e-29	44.7
WP_013024787.1\|3530337_3530616_-	hypothetical protein	NA	NA	NA	NA
WP_013024786.1\|3531037_3531757_-	helix-turn-helix transcriptional regulator	A0A2I6PIE7	Escherichia_phage	5.5e-43	35.4
WP_028714856.1\|3532116_3533370_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	3.9e-92	45.8
WP_014593015.1\|3533379_3534483_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	3.4e-60	42.4
WP_015700888.1\|3534834_3535953_+	porin OmpC	Q1MVN1	Enterobacteria_phage	1.1e-109	56.5

DBSCAN-SWA_7

4114556 : 4121602

Vibrio_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_104933750.1\|4114556_4115009_+	hypothetical protein	A0A067ZG68	Vibrio_phage	8.3e-45	58.4
WP_158639836.1\|4115391_4115811_+	hypothetical protein	NA	NA	NA	NA
WP_022622234.1\|4115866_4116109_+	DNA polymerase III subunit theta	A0A2H4J4A9	uncultured_Caudovirales_phage	3.4e-29	78.8
WP_104933087.1\|4116287_4117550_-	translesion error-prone DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	2.7e-146	60.5
WP_104933086.1\|4117549_4117975_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A218MND2	uncultured_virus	1.5e-24	50.8
WP_104933085.1\|4118736_4119441_-	SAM-dependent DNA methyltransferase	A0A2I7RHV5	Vibrio_phage	3.3e-16	28.1
WP_104933084.1\|4119580_4120528_-	DUF1281 domain-containing protein	NA	NA	NA	NA
WP_104933083.1\|4120621_4121602_-	DUF1738 domain-containing protein	A0A1V0EEV1	Caulobacter_phage	9.5e-54	39.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage