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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP026697 Citrobacter koseri strain AR_0025 chromosome, complete genome 14 crisprs DEDDh,cas3,PD-DExK,DinG,cas6f 1 2 5 0
NZ_CP026698 Citrobacter koseri strain AR_0025 plasmid unitig_2_pilon, complete sequence 0 crisprs NA 0 0 1 0
NZ_CP026699 Citrobacter koseri strain AR_0025 plasmid unitig_3_pilon, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP026697
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP026697_1 229433-229528 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP026697_2 588931-589039 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP026697_3 676961-677065 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP026697_4 1705793-1705911 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP026697_5 1733808-1733914 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP026697_6 2204816-2204916 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP026697_7 2995508-2995593 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP026697_8 3088359-3088496 Unclear NA
1 spacers
cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP026697_9 3288011-3288150 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP026697_10 3393777-3393874 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP026697_11 3741692-3741840 Unclear I-F
2 spacers
cas6f

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP026697_12 4007031-4007138 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP026697_13 4294113-4294210 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP026697_14 4723609-4723694 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP026697_12 12.1|4007056|58|NZ_CP026697|CRISPRCasFinder 4007056-4007113 58 NZ_CP026697.1 1848384-1848441 2 0.966

1. spacer 12.1|4007056|58|NZ_CP026697|CRISPRCasFinder matches to position: 1848384-1848441, mismatch: 2, identity: 0.966

aactgcatcgaaccgtaggcctgataagcgcagcgccatcaggcgcatttgccggatg	CRISPR spacer
aactgcgtcgaaccgtaggcctgataagcgcagcgccatcaggcgcctttgccggatg	Protospacer
******.*************************************** ***********

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP026697_1 1.1|229468|26|NZ_CP026697|CRISPRCasFinder 229468-229493 26 NZ_CP019447 Kosakonia cowanii JCM 10956 = DSM 18146 strain 888-76 plasmid p888-76-2, complete sequence 32636-32661 3 0.885
NZ_CP026697_1 1.1|229468|26|NZ_CP026697|CRISPRCasFinder 229468-229493 26 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 42099-42124 3 0.885
NZ_CP026697_4 4.1|1705832|41|NZ_CP026697|CRISPRCasFinder 1705832-1705872 41 NZ_CP043437 Enterobacter sp. LU1 plasmid unnamed 396223-396263 4 0.902
NZ_CP026697_1 1.1|229468|26|NZ_CP026697|CRISPRCasFinder 229468-229493 26 LR134132 Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 12 133985-134010 5 0.808
NZ_CP026697_1 1.1|229468|26|NZ_CP026697|CRISPRCasFinder 229468-229493 26 NZ_CP048385 Citrobacter freundii strain 62 plasmid p6_C, complete sequence 63088-63113 5 0.808
NZ_CP026697_1 1.1|229468|26|NZ_CP026697|CRISPRCasFinder 229468-229493 26 LR134122 Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2 272298-272323 5 0.808
NZ_CP026697_1 1.1|229468|26|NZ_CP026697|CRISPRCasFinder 229468-229493 26 NZ_CP019447 Kosakonia cowanii JCM 10956 = DSM 18146 strain 888-76 plasmid p888-76-2, complete sequence 9770-9795 6 0.769
NZ_CP026697_1 1.1|229468|26|NZ_CP026697|CRISPRCasFinder 229468-229493 26 NZ_CP019447 Kosakonia cowanii JCM 10956 = DSM 18146 strain 888-76 plasmid p888-76-2, complete sequence 9854-9879 6 0.769
NZ_CP026697_1 1.1|229468|26|NZ_CP026697|CRISPRCasFinder 229468-229493 26 NZ_AP023209 Escherichia coli strain TUM18781 plasmid pMTY18781-4, complete sequence 19391-19416 6 0.769
NZ_CP026697_1 1.1|229468|26|NZ_CP026697|CRISPRCasFinder 229468-229493 26 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 229104-229129 6 0.769
NZ_CP026697_1 1.1|229468|26|NZ_CP026697|CRISPRCasFinder 229468-229493 26 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 229205-229230 6 0.769
NZ_CP026697_1 1.1|229468|26|NZ_CP026697|CRISPRCasFinder 229468-229493 26 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 229407-229432 6 0.769
NZ_CP026697_1 1.1|229468|26|NZ_CP026697|CRISPRCasFinder 229468-229493 26 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 239598-239623 6 0.769
NZ_CP026697_1 1.1|229468|26|NZ_CP026697|CRISPRCasFinder 229468-229493 26 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 239699-239724 6 0.769
NZ_CP026697_1 1.1|229468|26|NZ_CP026697|CRISPRCasFinder 229468-229493 26 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 239901-239926 6 0.769
NZ_CP026697_1 1.1|229468|26|NZ_CP026697|CRISPRCasFinder 229468-229493 26 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 73215-73240 6 0.769
NZ_CP026697_1 1.1|229468|26|NZ_CP026697|CRISPRCasFinder 229468-229493 26 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 40402-40427 6 0.769
NZ_CP026697_1 1.1|229468|26|NZ_CP026697|CRISPRCasFinder 229468-229493 26 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 230510-230535 6 0.769
NZ_CP026697_1 1.1|229468|26|NZ_CP026697|CRISPRCasFinder 229468-229493 26 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 230611-230636 6 0.769
NZ_CP026697_1 1.1|229468|26|NZ_CP026697|CRISPRCasFinder 229468-229493 26 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 230813-230838 6 0.769
NZ_CP026697_1 1.1|229468|26|NZ_CP026697|CRISPRCasFinder 229468-229493 26 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 211480-211505 6 0.769
NZ_CP026697_1 1.1|229468|26|NZ_CP026697|CRISPRCasFinder 229468-229493 26 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 211581-211606 6 0.769
NZ_CP026697_1 1.1|229468|26|NZ_CP026697|CRISPRCasFinder 229468-229493 26 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 211783-211808 6 0.769
NZ_CP026697_1 1.1|229468|26|NZ_CP026697|CRISPRCasFinder 229468-229493 26 NZ_CP044147 Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2 7444-7469 6 0.769
NZ_CP026697_1 1.1|229468|26|NZ_CP026697|CRISPRCasFinder 229468-229493 26 CP044351 Escherichia coli strain 194195 plasmid p194195_1, complete sequence 84268-84293 6 0.769
NZ_CP026697_1 1.1|229468|26|NZ_CP026697|CRISPRCasFinder 229468-229493 26 NZ_AP023207 Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence 21755-21780 6 0.769
NZ_CP026697_1 1.1|229468|26|NZ_CP026697|CRISPRCasFinder 229468-229493 26 CP022016 Salmonella enterica subsp. enterica serovar India str. SA20085604 plasmid unnamed1, complete sequence 383147-383172 6 0.769
NZ_CP026697_1 1.1|229468|26|NZ_CP026697|CRISPRCasFinder 229468-229493 26 NZ_CP010208 Escherichia coli strain M11 plasmid B, complete sequence 27303-27328 6 0.769
NZ_CP026697_1 1.1|229468|26|NZ_CP026697|CRISPRCasFinder 229468-229493 26 NZ_CP010208 Escherichia coli strain M11 plasmid B, complete sequence 27402-27427 6 0.769
NZ_CP026697_1 1.1|229468|26|NZ_CP026697|CRISPRCasFinder 229468-229493 26 LR134125 Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5 424305-424330 6 0.769
NZ_CP026697_4 4.1|1705832|41|NZ_CP026697|CRISPRCasFinder 1705832-1705872 41 LR134125 Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5 355129-355169 6 0.854
NZ_CP026697_1 1.1|229468|26|NZ_CP026697|CRISPRCasFinder 229468-229493 26 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 229306-229331 7 0.731
NZ_CP026697_1 1.1|229468|26|NZ_CP026697|CRISPRCasFinder 229468-229493 26 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 239800-239825 7 0.731
NZ_CP026697_1 1.1|229468|26|NZ_CP026697|CRISPRCasFinder 229468-229493 26 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 230712-230737 7 0.731
NZ_CP026697_1 1.1|229468|26|NZ_CP026697|CRISPRCasFinder 229468-229493 26 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 211682-211707 7 0.731
NZ_CP026697_4 4.1|1705832|41|NZ_CP026697|CRISPRCasFinder 1705832-1705872 41 CP022016 Salmonella enterica subsp. enterica serovar India str. SA20085604 plasmid unnamed1, complete sequence 156615-156655 8 0.805
NZ_CP026697_4 4.1|1705832|41|NZ_CP026697|CRISPRCasFinder 1705832-1705872 41 NZ_CP053575 Citrobacter sp. TSA-1 plasmid unnamed2, complete sequence 37064-37104 8 0.805
NZ_CP026697_4 4.1|1705832|41|NZ_CP026697|CRISPRCasFinder 1705832-1705872 41 NZ_CP019203 Salmonella enterica subsp. enterica serovar Infantis strain CFSAN003307 plasmid pCFSAN003307, complete sequence 58486-58526 9 0.78
NZ_CP026697_4 4.1|1705832|41|NZ_CP026697|CRISPRCasFinder 1705832-1705872 41 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 42133-42173 9 0.78
NZ_CP026697_4 4.1|1705832|41|NZ_CP026697|CRISPRCasFinder 1705832-1705872 41 LR134122 Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2 208407-208447 9 0.78
NZ_CP026697_4 4.1|1705832|41|NZ_CP026697|CRISPRCasFinder 1705832-1705872 41 NZ_CP022659 Salmonella enterica subsp. enterica strain RM11060 plasmid pRM11060-1, complete sequence 31610-31650 9 0.78
NZ_CP026697_4 4.1|1705832|41|NZ_CP026697|CRISPRCasFinder 1705832-1705872 41 NZ_CP043437 Enterobacter sp. LU1 plasmid unnamed 422317-422357 10 0.756
NZ_CP026697_4 4.1|1705832|41|NZ_CP026697|CRISPRCasFinder 1705832-1705872 41 NZ_CP043437 Enterobacter sp. LU1 plasmid unnamed 368805-368845 10 0.756
NZ_CP026697_4 4.1|1705832|41|NZ_CP026697|CRISPRCasFinder 1705832-1705872 41 NZ_CP019203 Salmonella enterica subsp. enterica serovar Infantis strain CFSAN003307 plasmid pCFSAN003307, complete sequence 16045-16085 10 0.756
NZ_CP026697_4 4.1|1705832|41|NZ_CP026697|CRISPRCasFinder 1705832-1705872 41 NZ_LN868945 Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 3, complete sequence 12927-12967 10 0.756
NZ_CP026697_4 4.1|1705832|41|NZ_CP026697|CRISPRCasFinder 1705832-1705872 41 NZ_CP048385 Citrobacter freundii strain 62 plasmid p6_C, complete sequence 35171-35211 10 0.756
NZ_CP026697_4 4.1|1705832|41|NZ_CP026697|CRISPRCasFinder 1705832-1705872 41 NZ_LN868946 Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 4, complete sequence 40892-40932 10 0.756
NZ_CP026697_4 4.1|1705832|41|NZ_CP026697|CRISPRCasFinder 1705832-1705872 41 NZ_CP043437 Enterobacter sp. LU1 plasmid unnamed 263675-263715 11 0.732
NZ_CP026697_4 4.1|1705832|41|NZ_CP026697|CRISPRCasFinder 1705832-1705872 41 NZ_CP043437 Enterobacter sp. LU1 plasmid unnamed 263128-263168 11 0.732
NZ_CP026697_4 4.1|1705832|41|NZ_CP026697|CRISPRCasFinder 1705832-1705872 41 LR134125 Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5 47049-47089 11 0.732
NZ_CP026697_4 4.1|1705832|41|NZ_CP026697|CRISPRCasFinder 1705832-1705872 41 NZ_CP043437 Enterobacter sp. LU1 plasmid unnamed 289942-289982 12 0.707

1. spacer 1.1|229468|26|NZ_CP026697|CRISPRCasFinder matches to NZ_CP019447 (Kosakonia cowanii JCM 10956 = DSM 18146 strain 888-76 plasmid p888-76-2, complete sequence) position: , mismatch: 3, identity: 0.885

tattccgtaggccggataaggcgccg	CRISPR spacer
ttttgcgtaggccggataaggcgcag	Protospacer
* ** ******************* *

2. spacer 1.1|229468|26|NZ_CP026697|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 3, identity: 0.885

tattccgtaggccggataaggcgccg	CRISPR spacer
tacaccgtaggccggataaggcgcag	Protospacer
**. ******************** *

3. spacer 4.1|1705832|41|NZ_CP026697|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 4, identity: 0.902

atctctgtaggcccggtaagcgtagcgccaccgggcacaaa	CRISPR spacer
aattctgtaggcccggtaagcgcagcgccaccgggcaaaaa	Protospacer
* .*******************.************** ***

4. spacer 1.1|229468|26|NZ_CP026697|CRISPRCasFinder matches to LR134132 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 12) position: , mismatch: 5, identity: 0.808

tattccgtaggccggataaggcgccg	CRISPR spacer
cagaccgtaggccggataaggcgcta	Protospacer
.*  ********************..

5. spacer 1.1|229468|26|NZ_CP026697|CRISPRCasFinder matches to NZ_CP048385 (Citrobacter freundii strain 62 plasmid p6_C, complete sequence) position: , mismatch: 5, identity: 0.808

tattccgtaggccggataaggcgccg	CRISPR spacer
tgttccgtaggccggataaggcaagc	Protospacer
*.********************.   

6. spacer 1.1|229468|26|NZ_CP026697|CRISPRCasFinder matches to LR134122 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2) position: , mismatch: 5, identity: 0.808

tattccgtaggccggataaggcgccg	CRISPR spacer
cagaccgtaggccggataaggcgaag	Protospacer
.*  *******************  *

7. spacer 1.1|229468|26|NZ_CP026697|CRISPRCasFinder matches to NZ_CP019447 (Kosakonia cowanii JCM 10956 = DSM 18146 strain 888-76 plasmid p888-76-2, complete sequence) position: , mismatch: 6, identity: 0.769

tattccgtaggccggataaggcgccg	CRISPR spacer
acgcccgtaggccggataaggcgctt	Protospacer
   .********************. 

8. spacer 1.1|229468|26|NZ_CP026697|CRISPRCasFinder matches to NZ_CP019447 (Kosakonia cowanii JCM 10956 = DSM 18146 strain 888-76 plasmid p888-76-2, complete sequence) position: , mismatch: 6, identity: 0.769

tattccgtaggccggataaggcgccg	CRISPR spacer
acgcccgtaggccggataaggcgctt	Protospacer
   .********************. 

9. spacer 1.1|229468|26|NZ_CP026697|CRISPRCasFinder matches to NZ_AP023209 (Escherichia coli strain TUM18781 plasmid pMTY18781-4, complete sequence) position: , mismatch: 6, identity: 0.769

tattccgtaggccggataaggcgccg	CRISPR spacer
ccatccgtaggccggataaggcgttc	Protospacer
.  ********************.. 

10. spacer 1.1|229468|26|NZ_CP026697|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 6, identity: 0.769

tattccgtaggccggataaggcgccg	CRISPR spacer
ccatccgtaggccggataaggcgttc	Protospacer
.  ********************.. 

11. spacer 1.1|229468|26|NZ_CP026697|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 6, identity: 0.769

tattccgtaggccggataaggcgccg	CRISPR spacer
ccatccgtaggccggataaggcgttc	Protospacer
.  ********************.. 

12. spacer 1.1|229468|26|NZ_CP026697|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 6, identity: 0.769

tattccgtaggccggataaggcgccg	CRISPR spacer
ccatccgtaggccggataaggcgttt	Protospacer
.  ********************.. 

13. spacer 1.1|229468|26|NZ_CP026697|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 6, identity: 0.769

tattccgtaggccggataaggcgccg	CRISPR spacer
ccatccgtaggccggataaggcgttc	Protospacer
.  ********************.. 

14. spacer 1.1|229468|26|NZ_CP026697|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 6, identity: 0.769

tattccgtaggccggataaggcgccg	CRISPR spacer
ccatccgtaggccggataaggcgttc	Protospacer
.  ********************.. 

15. spacer 1.1|229468|26|NZ_CP026697|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 6, identity: 0.769

tattccgtaggccggataaggcgccg	CRISPR spacer
ccatccgtaggccggataaggcgttt	Protospacer
.  ********************.. 

16. spacer 1.1|229468|26|NZ_CP026697|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 6, identity: 0.769

tattccgtaggccggataaggcgccg	CRISPR spacer
ctacccgtaggccggataaggcgtag	Protospacer
.  .*******************. *

17. spacer 1.1|229468|26|NZ_CP026697|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 6, identity: 0.769

tattccgtaggccggataaggcgccg	CRISPR spacer
caaaccgtaggccggataaggcgttt	Protospacer
.*  *******************.. 

18. spacer 1.1|229468|26|NZ_CP026697|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 6, identity: 0.769

tattccgtaggccggataaggcgccg	CRISPR spacer
ccatccgtaggccggataaggcgttc	Protospacer
.  ********************.. 

19. spacer 1.1|229468|26|NZ_CP026697|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 6, identity: 0.769

tattccgtaggccggataaggcgccg	CRISPR spacer
ccatccgtaggccggataaggcgttc	Protospacer
.  ********************.. 

20. spacer 1.1|229468|26|NZ_CP026697|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 6, identity: 0.769

tattccgtaggccggataaggcgccg	CRISPR spacer
ccatccgtaggccggataaggcgttt	Protospacer
.  ********************.. 

21. spacer 1.1|229468|26|NZ_CP026697|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 6, identity: 0.769

tattccgtaggccggataaggcgccg	CRISPR spacer
ccatccgtaggccggataaggcgttc	Protospacer
.  ********************.. 

22. spacer 1.1|229468|26|NZ_CP026697|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 6, identity: 0.769

tattccgtaggccggataaggcgccg	CRISPR spacer
ccatccgtaggccggataaggcgttc	Protospacer
.  ********************.. 

23. spacer 1.1|229468|26|NZ_CP026697|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 6, identity: 0.769

tattccgtaggccggataaggcgccg	CRISPR spacer
ccatccgtaggccggataaggcgttt	Protospacer
.  ********************.. 

24. spacer 1.1|229468|26|NZ_CP026697|CRISPRCasFinder matches to NZ_CP044147 (Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2) position: , mismatch: 6, identity: 0.769

tattccgtaggccggataaggcgccg	CRISPR spacer
tcaaccgtaggccggataaggcgttc	Protospacer
*   *******************.. 

25. spacer 1.1|229468|26|NZ_CP026697|CRISPRCasFinder matches to CP044351 (Escherichia coli strain 194195 plasmid p194195_1, complete sequence) position: , mismatch: 6, identity: 0.769

tattccgtaggccggataaggcgccg	CRISPR spacer
tcaaccgtaggccggataaggcgttc	Protospacer
*   *******************.. 

26. spacer 1.1|229468|26|NZ_CP026697|CRISPRCasFinder matches to NZ_AP023207 (Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence) position: , mismatch: 6, identity: 0.769

tattccgtaggccggataaggcgccg	CRISPR spacer
cgattcgtaggccggataaggcgctc	Protospacer
.. *.*******************. 

27. spacer 1.1|229468|26|NZ_CP026697|CRISPRCasFinder matches to CP022016 (Salmonella enterica subsp. enterica serovar India str. SA20085604 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.769

tattccgtaggccggataaggcgccg	CRISPR spacer
ggttcagtaggccggataaggcggaa	Protospacer
 .*** *****************  .

28. spacer 1.1|229468|26|NZ_CP026697|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 6, identity: 0.769

tattccgtaggccggataaggcgccg	CRISPR spacer
tcacccgtaggccggataaggcgttc	Protospacer
*  .*******************.. 

29. spacer 1.1|229468|26|NZ_CP026697|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 6, identity: 0.769

tattccgtaggccggataaggcgccg	CRISPR spacer
tcacccgtaggccggataaggcgttc	Protospacer
*  .*******************.. 

30. spacer 1.1|229468|26|NZ_CP026697|CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 6, identity: 0.769

tattccgtaggccggataaggcgccg	CRISPR spacer
cctaccgtaggccggataaggcgttc	Protospacer
. * *******************.. 

31. spacer 4.1|1705832|41|NZ_CP026697|CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 6, identity: 0.854

atctctgtaggcccggtaagcgtagcgccaccgggcacaaa	CRISPR spacer
cttaccgtaggcccggtaagcgtagcgccaccgggcaaaat	Protospacer
 *. *.******************************* ** 

32. spacer 1.1|229468|26|NZ_CP026697|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 7, identity: 0.731

tattccgtaggccggataaggcgccg	CRISPR spacer
ccacccgtaggccggataaggcgttc	Protospacer
.  .*******************.. 

33. spacer 1.1|229468|26|NZ_CP026697|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 7, identity: 0.731

tattccgtaggccggataaggcgccg	CRISPR spacer
ccacccgtaggccggataaggcgttc	Protospacer
.  .*******************.. 

34. spacer 1.1|229468|26|NZ_CP026697|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 7, identity: 0.731

tattccgtaggccggataaggcgccg	CRISPR spacer
ccacccgtaggccggataaggcgttc	Protospacer
.  .*******************.. 

35. spacer 1.1|229468|26|NZ_CP026697|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 7, identity: 0.731

tattccgtaggccggataaggcgccg	CRISPR spacer
ccacccgtaggccggataaggcgttc	Protospacer
.  .*******************.. 

36. spacer 4.1|1705832|41|NZ_CP026697|CRISPRCasFinder matches to CP022016 (Salmonella enterica subsp. enterica serovar India str. SA20085604 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.805

atctctgtaggcccggtaagcgtagcgccaccgggcacaaa	CRISPR spacer
gattttgtaggcccggtaagcgcagcgccaccgggcaacac	Protospacer
. .*.*****************.**************  * 

37. spacer 4.1|1705832|41|NZ_CP026697|CRISPRCasFinder matches to NZ_CP053575 (Citrobacter sp. TSA-1 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.805

atctctgtaggcccggtaagcgtagcgccaccgggcacaaa	CRISPR spacer
ataacggtaggcccggtaagcgaagcgtcaccgggcaagag	Protospacer
**  * **************** ****.********* .*.

38. spacer 4.1|1705832|41|NZ_CP026697|CRISPRCasFinder matches to NZ_CP019203 (Salmonella enterica subsp. enterica serovar Infantis strain CFSAN003307 plasmid pCFSAN003307, complete sequence) position: , mismatch: 9, identity: 0.78

atctctgtaggcccggtaagcgtagcgccaccgggcacaaa	CRISPR spacer
tttaccgtaggcccgataagcgtagcgccatcgggcaacag	Protospacer
 *. *.*********.**************.******  *.

39. spacer 4.1|1705832|41|NZ_CP026697|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 9, identity: 0.78

atctctgtaggcccggtaagcgtagcgccaccgggcacaaa	CRISPR spacer
ggttttgtaggcccggtaagcgcagcgccaccgggcaatct	Protospacer
. .*.*****************.**************    

40. spacer 4.1|1705832|41|NZ_CP026697|CRISPRCasFinder matches to LR134122 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2) position: , mismatch: 9, identity: 0.78

atctctgtaggcccggtaagcgtagcgccaccgggcacaaa	CRISPR spacer
cgatcggtagccccggtaagcgtagcgccaccggggaagat	Protospacer
   ** **** ************************ * .* 

41. spacer 4.1|1705832|41|NZ_CP026697|CRISPRCasFinder matches to NZ_CP022659 (Salmonella enterica subsp. enterica strain RM11060 plasmid pRM11060-1, complete sequence) position: , mismatch: 9, identity: 0.78

atctctgtaggcccggtaagcgtagcgccaccgggcacaaa	CRISPR spacer
tttaccgtaggcccgataagcgtagcgccatcgggcaacag	Protospacer
 *. *.*********.**************.******  *.

42. spacer 4.1|1705832|41|NZ_CP026697|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 10, identity: 0.756

atctctgtaggcccggtaagcgtagcgccaccgggcacaaa	CRISPR spacer
ccccacgtaggcccggtaagcgtagcgccaccgggcttttt	Protospacer
 .*. .****************************** .   

43. spacer 4.1|1705832|41|NZ_CP026697|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 10, identity: 0.756

atctctgtaggcccggtaagcgtagcgccaccgggcacaaa	CRISPR spacer
tgttttgtagccccggtaagcgtagcgtcaccggggagagt	Protospacer
  .*.***** ****************.******* * *. 

44. spacer 4.1|1705832|41|NZ_CP026697|CRISPRCasFinder matches to NZ_CP019203 (Salmonella enterica subsp. enterica serovar Infantis strain CFSAN003307 plasmid pCFSAN003307, complete sequence) position: , mismatch: 10, identity: 0.756

atctctgtaggcccggtaagcgtagcgccaccgggcacaaa	CRISPR spacer
caacgtgtaggcccggtaagcgcagcgccaccgggcaaccc	Protospacer
   . *****************.**************    

45. spacer 4.1|1705832|41|NZ_CP026697|CRISPRCasFinder matches to NZ_LN868945 (Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 3, complete sequence) position: , mismatch: 10, identity: 0.756

atctctgtaggcccggtaagcgtagcgccaccgggcacaaa	CRISPR spacer
caacgtgtaggcccggtaagcgcagcgccaccgggcaaccc	Protospacer
   . *****************.**************    

46. spacer 4.1|1705832|41|NZ_CP026697|CRISPRCasFinder matches to NZ_CP048385 (Citrobacter freundii strain 62 plasmid p6_C, complete sequence) position: , mismatch: 10, identity: 0.756

atctctgtaggcccggtaagcgtagcgccaccgggcacaaa	CRISPR spacer
tgacttgtaggcccgataagcgtagcgccatcgggcaatat	Protospacer
   ..**********.**************.******  * 

47. spacer 4.1|1705832|41|NZ_CP026697|CRISPRCasFinder matches to NZ_LN868946 (Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 4, complete sequence) position: , mismatch: 10, identity: 0.756

atctctgtaggcccggtaagcgtagcgccaccgggcacaaa	CRISPR spacer
taggcggtaagcccggtaagcgaagcgccaccgggcaagag	Protospacer
    * ***.************ ************** .*.

48. spacer 4.1|1705832|41|NZ_CP026697|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 11, identity: 0.732

atctctgtaggcccggtaagcgtagcgccaccgggcacaaa	CRISPR spacer
tcgatcgtaggcccggtaagcgcagcgccaccgggcaatgg	Protospacer
 .  ..****************.**************  ..

49. spacer 4.1|1705832|41|NZ_CP026697|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 11, identity: 0.732

atctctgtaggcccggtaagcgtagcgccaccgggcacaaa	CRISPR spacer
gcacccgtaggcccggtaagcgaagcgccaccgggctttgt	Protospacer
.. .*.**************** ************* . . 

50. spacer 4.1|1705832|41|NZ_CP026697|CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 11, identity: 0.732

atctctgtaggcccggtaagcgtagcgccaccgggcacaaa	CRISPR spacer
gccattgtagccccggtaagcgcagcgccaccggggagcgg	Protospacer
..* .***** ***********.************ *  ..

51. spacer 4.1|1705832|41|NZ_CP026697|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 12, identity: 0.707

atctctgtaggcccggtaagcgtagcgccaccgggcacaaa	CRISPR spacer
tgatgggtagggccggtaagcgcagcgccaccgggcttctg	Protospacer
   *  ***** **********.************* .  .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 200084 : 212163 8 Liberibacter_phage(50.0%) integrase attL 206235:206250|attR 219733:219748
DBSCAN-SWA_2 3459639 : 3505481 62 Salmonella_phage(24.44%) holin,terminase,tail,coat NA
DBSCAN-SWA_3 4094507 : 4203939 85 Escherichia_phage(39.39%) holin,transposase,integrase attL 4127325:4127340|attR 4196237:4196252
DBSCAN-SWA_4 4209833 : 4273517 56 Escherichia_phage(24.0%) transposase,integrase attL 4202849:4202908|attR 4254542:4255901
DBSCAN-SWA_5 4280801 : 4342267 57 Salmonella_phage(23.08%) tRNA,protease,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP026698
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 9338 : 74015 65 Stx2-converting_phage(33.33%) transposase,integrase attL 13451:13510|attR 69625:72061
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage