CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP014111	Escherichia coli strain FDAARGOS_144 chromosome, complete genome	1 crisprs	cas3,DEDDh,DinG,c2c9_V-U4,csa3	7
NZ_CP014112	Escherichia coli strain FDAARGOS_144 plasmid unnamed2, complete sequence	0 crisprs	NA	0
NZ_CP014109	Escherichia coli strain FDAARGOS_144 plasmid unnamed3	0 crisprs	NA	0
NZ_CP014110	Escherichia coli strain FDAARGOS_144 plasmid unnamed1, complete sequence	0 crisprs	RT	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP014111_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014111_1

221816-221898

Orphan

I-F

Consensus_repeat	Method
AGTTCACTGCCGTACAGGCAGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014111_1

>merge|NZ_CP014111|1|221816-221898|CRISPRCasFinder
AGTTCACTGCCGTACAGGCAGCTTAGAAATTGCCGCGGATCCTGTCTGCCAATAATGACAAGTTCACTGCCGTACAGGCAGAT

>NZ_CP014111|1|1|221816-221898|CRISPRCasFinder
AGTTCACTGCCGTACAGGCAGCT	TAGAAATTGCCGCGGATCCTGTCTGCCAATAATGACA
AGTTCACTGCCGTACAGGCAGAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014111.1\|WP_000458841.1\|208401_210054_-\|hydroxylamine-reductase	unknown	unknown	gnl\|CDD\|235391
NZ_CP014111.1\|WP_000410785.1\|218429_218654_-\|cold-shock-like-protein-CspD	unknown	unknown	gnl\|CDD\|77494
NZ_CP014111.1\|WP_022296400.1\|225260_227027_-\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	unknown	unknown	gnl\|CDD\|236870
NZ_CP014111.1\|WP_000228473.1\|228658_229153_+\|leucine-responsive-transcriptional-regulator-Lrp	unknown	unknown	gnl\|CDD\|183009
NZ_CP014111.1\|WP_000067797.1\|234174_235518_+\|replication-associated-recombination-protein-RarA	unknown	unknown	gnl\|CDD\|237355
NZ_CP014111.1\|WP_022296401.1\|223538_225260_-\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	unknown	unknown	gnl\|CDD\|236865
NZ_CP014111.1\|WP_024186894.1\|227149_228115_-\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|182343
NZ_CP014111.1\|WP_001526801.1\|210197_211097_-\|L-lysine-exporter-LysO	unknown	unknown	gnl\|CDD\|225287
NZ_CP014111.1\|WP_001298299.1\|211416_212112_-\|aquaporin-Z	unknown	unknown	gnl\|CDD\|235453
NZ_CP014111.1\|WP_022296398.1\|235608_236901_+\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461
NZ_CP014111.1\|WP_000934041.1\|219327_221604_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
NZ_CP014111.1\|WP_000520781.1\|218976_219297_+\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NZ_CP014111.1\|WP_001526803.1\|222792_223497_-\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
NZ_CP014111.1\|WP_001295343.1\|233552_234164_+\|outer-membrane-lipoprotein-chaperone-LolA	unknown	unknown	gnl\|CDD\|129638
NZ_CP014111.1\|WP_000599806.1\|212536_214195_+\|ATP-dependent-endonuclease	unknown	unknown	gnl\|CDD\|226121
NZ_CP014111.1\|WP_001351020.1\|214191_215148_-\|DUF535-domain-containing-protein	unknown	unknown	gnl\|CDD\|225537
NZ_CP014111.1\|WP_033556507.1\|229287_233394_+\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|236669
NZ_CP014111.1\|WP_001040187.1\|222289_222508_-\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
NZ_CP014111.1\|WP_001524406.1\|216410_218357_+\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	unknown	unknown	gnl\|CDD\|182528
NZ_CP014111.1\|WP_000746478.1\|215298_216414_+\|macrolide-transporter-subunit-MacA	unknown	unknown	gnl\|CDD\|183211

Protein	Function_ID	Function_description	E-value
NZ_CP014111.1\|WP_000458841.1\|208401_210054_-\|hydroxylamine-reductase	gnl\|CDD\|235391	PRK05290, PRK05290, hybrid cluster protein; Provisional.	0
NZ_CP014111.1\|WP_000410785.1\|218429_218654_-\|cold-shock-like-protein-CspD	gnl\|CDD\|77494	PRK09937, PRK09937, cold shock-like protein CspD.	1.48016e-47
NZ_CP014111.1\|WP_022296400.1\|225260_227027_-\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	gnl\|CDD\|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP014111.1\|WP_000228473.1\|228658_229153_+\|leucine-responsive-transcriptional-regulator-Lrp	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	5.32926e-117
NZ_CP014111.1\|WP_000067797.1\|234174_235518_+\|replication-associated-recombination-protein-RarA	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
NZ_CP014111.1\|WP_022296401.1\|223538_225260_-\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP014111.1\|WP_024186894.1\|227149_228115_-\|thioredoxin-disulfide-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	0
NZ_CP014111.1\|WP_001526801.1\|210197_211097_-\|L-lysine-exporter-LysO	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	3.07671e-117
NZ_CP014111.1\|WP_001298299.1\|211416_212112_-\|aquaporin-Z	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	2.04944e-144
NZ_CP014111.1\|WP_022296398.1\|235608_236901_+\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
NZ_CP014111.1\|WP_000934041.1\|219327_221604_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
NZ_CP014111.1\|WP_000520781.1\|218976_219297_+\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	2.48686e-49
NZ_CP014111.1\|WP_001526803.1\|222792_223497_-\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	1.8761e-140
NZ_CP014111.1\|WP_001295343.1\|233552_234164_+\|outer-membrane-lipoprotein-chaperone-LolA	gnl\|CDD\|129638	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself. [Protein fate, Protein and peptide secretion and trafficking].	1.48786e-125
NZ_CP014111.1\|WP_000599806.1\|212536_214195_+\|ATP-dependent-endonuclease	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0
NZ_CP014111.1\|WP_001351020.1\|214191_215148_-\|DUF535-domain-containing-protein	gnl\|CDD\|225537	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown].	3.43529e-131
NZ_CP014111.1\|WP_033556507.1\|229287_233394_+\|DNA-translocase-FtsK	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	0
NZ_CP014111.1\|WP_001040187.1\|222289_222508_-\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	8.41354e-49
NZ_CP014111.1\|WP_001524406.1\|216410_218357_+\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
NZ_CP014111.1\|WP_000746478.1\|215298_216414_+\|macrolide-transporter-subunit-MacA	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0

>NZ_CP014111.1|WP_000934041.1|219327_221604_+|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPTQSSDPGSQPNSEEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEKNELTYGFQSAQKHKAEAAH
>NZ_CP014111.1|WP_000520781.1|218976_219297_+|ATP-dependent-Clp-protease-adapter-ClpS
MGKTNDWLDFDQLAEEKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA
>NZ_CP014111.1|WP_000410785.1|218429_218654_-|cold-shock-like-protein-CspD
MEKGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKGNHASVIVPVEVEAAVA
>NZ_CP014111.1|WP_001524406.1|216410_218357_+|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB
MTPLLELKDIRRSYPAGDEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKATSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAEQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRTEYYPAQLSGGQQQRVSIVRALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAIEKVNATGGTEPVVNTASGWRQFVSGFNEALTMAWRALAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQMVLADIRSIGTNTIDVYPGKDFGDDDPQYQQALKYDDLIAIQKQPWVASATPAVSQNLRLRYNNVDVAASANGVSGDYFNVYGMTFSEGNTFNQEQLNGRAQVVVLDSNTRRQLFPHKADVVGEVILVGNMPARVIGVAEEKQSMFGSSKVLRVWLPYSTMSGRVMGQSWLNSITVRVKEGFDSAEAEQQLTRLLSLRHGKKDFFTWNMDGVLKTVEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGALGITLSLLIAFTLQLFLPGWEIGFSPLALLLAFLCSTVTGILFGWLPARNAARLDPVDALARE
>NZ_CP014111.1|WP_000746478.1|215298_216414_+|macrolide-transporter-subunit-MacA
MKKRKTVKKRYVIAMVIVIAGLITLWRILNAPVPTYQTLIVRPGDLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPLTRYEGQIKDVLPTPEKINDAIFYYARFEVPNPNGLLRLDMTAQVHIQLTDVKNVLTIPLSALGDPVGDNRYKVKLLRNGETREREVTIGARNDTDVEIVKGLEAGDEVVIGEAKPGAAQ
>NZ_CP014111.1|WP_001351020.1|214191_215148_-|DUF535-domain-containing-protein
MNMSQLTERTFTPSESLSSLSLFLSLARGQCRPGKFWHRRSFRQKFLLRSLIMPRLSVEWMNELSHWPNLNVLLTRQPRLPVRLHRPYLAANLSRKQLLEALRYHYALLRGCMSAEEFSLYLNTPGLQLAKLEGKNGEQFTLELTMMISMDKEGDSTILFRNSEGIPLAELTFTLCEYQGKRTMFIGGLQGAKWEIPHQEIQNATKACHGLFPKRLVMEAACLFAQRLQVEQIIAVSNETHIYRSLRYRDKEGKIHADYNAFWESVGGVCDAERHYRLPAQIARKEIAEIASKKRAEYRRRYEMLDAIQPQMATMFCS
>NZ_CP014111.1|WP_000599806.1|212536_214195_+|ATP-dependent-endonuclease
MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPESDLYHFERDDFWFPPGDINGREHHLHIILTFRESLPGRHRVRRYRPLEACWTPCTDGYHRIFYRLEGESAEDGSVMTLRSFLDKDGHPIDVEDINDQARHLVRLMPVLRLRDARFMRRIRNGTVPNVPNVEVTARQLDFLARELSSHPQNLSDGQIRQGLSAMVQLLEHYFSEQGAGQARYRLMRRRASNEQRSWRYLDIINRMIDRPGGRSYRVILLGLFATLLQAKGTLRLDKDARPLLLIEDPETRLHPIMLSVAWHLLNLLPLQRIATTNSGELLSLTPVEHVCRLVRESSRVAAWRLGPSGLSTEDSRRISFHIRFNRPSSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREAEREHLTALPALDMEHFMYRQGFSDVFHRVAQIPENVPMNLRKIISKAIHRSSKPDLAIEVAMEAGRRGVDSVPTLLKKMFSRVLWLARGRAD
>NZ_CP014111.1|WP_001298299.1|211416_212112_-|aquaporin-Z
MFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKRD
>NZ_CP014111.1|WP_001526801.1|210197_211097_-|L-lysine-exporter-LysO
MFSGLLIILVPLIVGYLIPLRQKAALRVINQLLSWMVYLILFFMGISLAFLDNLASNLLAILHYSAVSITVILLCNIAALMWLERCLPWRNHHQQEKLPSRIAMALESLKLCGVVVIGFAIGLSGLAFLQHATEASEYTLILLLFLVGIQLRNNGMTLKQIVLNRRGMIVAVVVVASSLIGGLINAFILDLSINTALAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLIRRSRSTALGLCGATSMDFTLPVLQRTGGLDMVPAAIVHGFILSLLVPILIAFFSA
>NZ_CP014111.1|WP_000458841.1|208401_210054_-|hydroxylamine-reductase
MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIATLQGLSAWAVKAREYGIINHDVDSFAPRAFFSTLTNVNFDSPRIIGYAREAIALREALKAQCLAVDANARVDNPMADLQLVSDDLGELQRQAAEFTPNKDKAAIGENILGLRLLCLYGLKGAAAYMEHAHVLGQYDNDIYAQYHKIMAWLGTWPADMNALLECSMEIGQMNFKVMSILDAGETGKYGHPTPTQVNVKATAGKCILISGHDLKDLYNLLEQTEGTGVNVYTHGEMLPAHGYPELRKFKHLVGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVGAYDDRIWTRSIVGWPGVRHLDGEDFSAVIAQAQQMAGFPYSEIPHLITVGFGRQTLLGAADTLIDLVSREKLRHIFLLGGCDGARGERHYFTDFATSVPDDCLILTLACGKYRFNKLEFGDIEGLPRLVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVKNIVTGPTAPGFLTPDLLAVLNEKFGLRSITTVEEDMKQLLSA
>NZ_CP014111.1|WP_001040187.1|222289_222508_-|translation-initiation-factor-IF-1
MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR
>NZ_CP014111.1|WP_001526803.1|222792_223497_-|leucyl/phenylalanyl-tRNA--protein-transferase
MRLVQLSRHSIAFPSPEGALREPNGLLALGGDLSPARLLMAYQRGIFPWFSPGDPILWWSPDPRAVLWPESLHISRSMKRFHKRSPYRVTMNYAFGQVIEGCASDREEGTWITRGVVEAYHRLHELGHAHSIEVWREGELVGGMYGVAQGTLFCGESMFSRMENASKTALLVFCDEFIRHGGKLIDCQVLNDHTASLGACEIPRRDYLNYLNQMRPERLPNNFWVPRRLFSPQE
>NZ_CP014111.1|WP_022296401.1|223538_225260_-|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC
MRALLPYLALYKRHKWMLSLGIVLAIVTLLASIGLLTLSGWFLSASAVAGVAGLYSFNYMLPAAGVRGAAITRTAGRYFERLVSHDATFRVLQHLRIYTFSKLLPLSPAGLARYRQGELLNRVVADVDTLDHLYLRVISPLVGAFVVIMVVTIGFSFLDFTLAFTLGGIMLLTLFLMPPLFYRAGKSTGQNLTHLRGQYRQQLTAWLQGQAELTIFGASDRYRTQLENTEIQWLEAQRRQSELTALSQAIMLLIGALAVILMLWMASGGVGGNAQPGALIALFVFCALAAFEALAPVTGAFQHLGQVIASAVRISDLTDQKPEVTFPDTQTRVADRVSLTLRDVQFTYPEQSQQALKGISLQVNAGEHIAILGRTGCGKSTLLQLLTRAWDPQQGEILLNNSPLASLNEAALRQTISVVPQRVHLFSATLRDNLLLASPDSSDEALAEILRRVGLEKLLEDAGLNSWLGEGGRQLSGGELRRLAIARALLHDAPLVLLDEPTEGLDATTESQILELLAEMMREKTVLMVTHRLRGLSRFQQIIVMDNGQIIEQGTHAELLARQGRYYQFKQGL
>NZ_CP014111.1|WP_022296400.1|225260_227027_-|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD
MNKSRQKELTRWLKQQSVISQRWLNISRLLGFVSGILIIAQAWFMARILQHMIMENIPREALLLPFTLLFLTFVLRAWVVWLRERVGYHAGQHIRFAIRRQVLDRLQQAGPAWIQGKPAGSWATLVLEQIDDMHDYYARYLPQMALAVSVPLLIVVAIFPSNWAAALILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGMETLRIFGRGEAEIESIRSASEDFRQRTMEVLRLAFLSSGILEFFTSLSIALVAVYFGFSYLGELDFGHYDTGVTLAAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFMETPLAHPQRGEAELASTDPVTIEAEDLFITSPEGKTLAGPLNFTLPAGQRAVLVGRSGSGKSSLLNALSGFLSYQGSLRINGIELRDLSPESWRKHLSWVGQNPQLPAATLRDNVLLARPDASEQELQTALDNAWVSEFLPLLPQGVDTPVGDQAARLSVGQAQRVAVARALLNPCSLLLLDEPAASLDAHSEQRVMEALNAASLRQTTLMVTHQLEDLADWDVIWVMQDGQIIEQGRYAELSVAGGPFAILLAHRQEEI
>NZ_CP014111.1|WP_024186894.1|227149_228115_-|thioredoxin-disulfide-reductase
MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVIGDQMGVTGVRLRDTQNTDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLADAK
>NZ_CP014111.1|WP_000228473.1|228658_229153_+|leucine-responsive-transcriptional-regulator-Lrp
MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
>NZ_CP014111.1|WP_033556507.1|229287_233394_+|DNA-translocase-FtsK
MSQEYTEDKEVTLTKLSSGRRLLEALLILIVLFAVWLMAALLSFNPSDPSWSQTAWHEPIHNLGGMPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQSSDEYIDYFAVSLRIIGVLALILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPLLHSSGGTIALLCVWAAGLTLFTGWSWVTIAEKLGGWILNILTFASNRTRRDDTWVDEDEYEDDEEYEDENHGKQHESRRARILRGALARRKRLAEKFINPMGRQTDAALFSGKRMDDDEEITYTARGVAADPDDVLFSGNRATQPEYDEYDPLLNGAPITEPVAVAAAATTATQSWAAPVEPVTQTPPVASVDVAPAQPTVAWQPVPGPQTGEPVIAPAPEGYPQQPQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAAEQPVQQPYYATAAEQPAQQPYYAPAPEQAVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPTRPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSPLASGVKKATLATGAAATVAAPVFSLANSGGPRPQVKEGIGPQLPRPKRIRVPTRRELASYGIKLPSQRAAEEKAREAQRNQYDSGDQYNDDEIDAMQQDELARQFAQTQQQRYGEQYQHDVPVNTEDADAAAEAELARQFAQTQQQRYSGEQPAGANPFSLDDFEFSPMKALLDDGPHEPLFTPIVEPVQQPQQPIAPQQQYQQPQQPVAPQPQYQQPQQPVAPQQQYQQPQQPVAPQQQYQQPQQPVTQQPQYQQPQQPVVPQPQYQQPQQPVAPQPQDTLLHPLLMRNGDSRPLHKPTTPLPSLDLLTPPPSEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFRDNPSPLTVVLGKDIAGEPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQAGAESLLGMGDMLYSGSNSTLPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSDSESEGGAGGFDGAEELDPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNREVLAPPPFD
>NZ_CP014111.1|WP_001295343.1|233552_234164_+|outer-membrane-lipoprotein-chaperone-LolA
MKKIAITCALLSSLVASSVWADAASDLKSRLDKVSSFHASFTQKVTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATWLKDATGNTPFMLIARNQSSDWQQYNIKQNGDDFVLTPKASNGNLKQFTINVGRDGTIHQFSAVEQDDQRSSYQLKSQQNGAVDAAKFTFTPPQGVTVDDQRK
>NZ_CP014111.1|WP_000067797.1|234174_235518_+|replication-associated-recombination-protein-RarA
MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAVGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEANAYAAGEVYFPPEIAQTRYYFPTNRGLEGKIGEKLAWLAEQDQNSPIKRYR
>NZ_CP014111.1|WP_022296398.1|235608_236901_+|serine--tRNA-ligase
MLDPNLLRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGEELDAAKAELDALQAEIRDIALTIPNLPADEVPVGKDENDNVEVSRWGTPREFDFEVRDHVTLGEMHSSLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYSENYVPYLVNQDTLYGTGQLPKFAGDLFHTRPLEEEADTSNYALIPTAEVPLTNLVRGEIIDEDDLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQIVRPEDSMAALEEMTGHAEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWIPAQNTYREISSCSNVWDFQARRMQARCRSKSDKKTRLVHTLNGSGLAVGRTLVAVMENYQQADGRIEVPEVLRPYMNGLEYIG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

465913 : 513200

Enterobacteria_phage(60.0%)

terminase,capsid,integrase,tRNA,portal,lysis,head,tail

attL 464125:464139|attR 513392:513406

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
464125:464139	attL	NA	NA	NA	NA
WP_022296362.1\|465913_467020_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_022296361.1\|467073_467535_-	phosphatase NudJ	NA	NA	NA	NA
WP_022296360.1\|467544_468198_-	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_000444487.1\|468369_469620_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-23	100.0
WP_000741335.1\|469733_470876_-\|integrase	phage integrase Arm DNA-binding domain-containing protein	Q77Z02	Phage_21	3.6e-206	100.0
WP_000088653.1\|470865_471102_-	excisionase	NA	NA	NA	NA
WP_000490213.1\|471241_471481_-	DUF4222 domain-containing protein	M1FPC8	Enterobacteria_phage	4.7e-39	96.2
WP_000002139.1\|471464_471791_-	ASCH domain-containing protein	A5VWB6	Enterobacteria_phage	9.8e-48	95.7
WP_000763374.1\|471790_472012_-	TraR/DksA family transcriptional regulator	A0A1I9LJM6	Stx_converting_phage	2.3e-32	93.2
WP_021533932.1\|472110_472392_-	cell division protein ZapA	A0A0P0ZE02	Stx2-converting_phage	3.0e-45	95.7
WP_000548516.1\|472402_472594_-	DUF1382 family protein	A0A0P0ZC67	Stx2-converting_phage	1.8e-25	93.7
WP_000149537.1\|472566_472749_-	DUF1317 domain-containing protein	A0A1U8QQC1	Enterobacteria_phage	1.8e-27	98.3
WP_021524004.1\|472745_473426_-	YqaJ viral recombinase family protein	A0A0P0ZCD4	Stx2-converting_phage	1.0e-131	99.6
WP_000100847.1\|473422_474208_-	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	6.3e-149	100.0
WP_022296359.1\|474213_474510_-	host-nuclease inhibitor protein gam from bacteriophage origin	A0A1I9LJN1	Stx_converting_phage	1.1e-48	98.0
WP_023148105.1\|474585_474876_-	hypothetical protein	K7P6H3	Enterobacteria_phage	5.0e-27	85.1
WP_000340376.1\|475267_476131_-	hypothetical protein	M9NYX6	Enterobacteria_phage	1.8e-93	62.1
WP_000858975.1\|476197_476887_-	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	2.8e-92	75.0
WP_001067458.1\|476991_477222_+	helix-turn-helix domain-containing protein	A0A2H4FNF3	Salmonella_phage	1.5e-21	68.0
WP_022296358.1\|477291_477831_+	toxin YdaT domain-containing protein	M9NZI6	Enterobacteria_phage	2.6e-61	66.1
WP_077543238.1\|477827_478847_+	replication protein	A0A0K2FJ31	Enterobacteria_phage	1.3e-109	67.3
WP_022296357.1\|478843_479545_+	phage DNA replication protein P	M1FJ72	Enterobacteria_phage	3.0e-126	97.4
WP_077884392.1\|479794_484060_+	inverse autotransporter beta domain-containing protein	NA	NA	NA	NA
WP_000700202.1\|484096_485140_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_072190466.1\|485489_485591_+	hypothetical protein	NA	NA	NA	NA
WP_001053006.1\|485587_486043_+	DNA base-flipping protein YbcN	I6PD71	Cronobacter_phage	4.5e-59	66.2
WP_000224907.1\|486042_486213_+	hypothetical protein	K7P7K0	Enterobacteria_phage	5.3e-13	67.9
WP_000774475.1\|486205_486496_+	DUF1364 domain-containing protein	K7PGZ6	Enterobacteria_phage	1.3e-46	93.8
WP_001099697.1\|486492_486855_+	crossover junction endodeoxyribonuclease RusA	K7PM48	Enterobacteria_phage	7.3e-60	95.7
WP_000971095.1\|486851_486992_+	YlcG family protein	K7PHH3	Enterobacteria_phage	1.7e-09	72.1
WP_001204794.1\|487077_487461_+	antitermination protein QuuD	A0A088CD47	Shigella_phage	2.0e-55	82.5
WP_000737271.1\|487649_488732_-	porin OmpC	Q1MVN1	Enterobacteria_phage	1.6e-166	80.1
WP_022296415.1\|489321_489537_+\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	1.5e-33	98.6
WP_000075094.1\|489536_490034_+	lysozyme RrrD	A5LH83	Enterobacteria_phage	1.7e-91	99.4
WP_001441931.1\|490030_490474_+\|lysis	lysis protein	M1FJ79	Enterobacteria_phage	4.3e-70	92.5
WP_000084844.1\|490512_490887_+	hypothetical protein	M1FPD9	Enterobacteria_phage	1.5e-47	80.6
WP_001205136.1\|490985_491168_-	hypothetical protein	NA	NA	NA	NA
WP_000867568.1\|491477_492026_+\|terminase	terminase small subunit	A0A0U2S671	Escherichia_phage	1.0e-57	84.2
WP_022296416.1\|491997_493926_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	9.7e-260	66.6
WP_000258997.1\|493909_494116_+\|head	phage head-stabilizing protein	K7PM10	Enterobacteria_phage	3.0e-10	55.4
WP_001441934.1\|494112_495705_+\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	4.2e-184	60.9
WP_022296417.1\|495694_497200_+	S49 family peptidase	A0A0K2FI53	Enterobacteria_phage	7.9e-100	53.5
WP_000256813.1\|497236_497584_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	2.6e-22	58.1
WP_000522651.1\|497641_498670_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	2.7e-115	61.6
WP_000201530.1\|498721_499096_+	hypothetical protein	NA	NA	NA	NA
WP_001204540.1\|499088_499442_+\|tail	tail attachment protein	A0A0K2FJB7	Enterobacteria_phage	3.4e-38	65.0
WP_001007371.1\|499453_500032_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	1.7e-79	92.2
WP_000683149.1\|500028_500424_+\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	5.0e-70	98.5
WP_022296418.1\|500431_501172_+\|tail	phage tail protein	A0A2I6TC77	Escherichia_phage	4.3e-131	98.4
WP_000479163.1\|501187_501610_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	2.4e-70	95.7
WP_000459457.1\|501591_502026_+\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	6.9e-65	100.0
WP_059346522.1\|502018_504580_+\|tail	phage tail tape measure protein	A0A0K2FI43	Enterobacteria_phage	0.0e+00	90.4
WP_022296420.1\|504576_504906_+\|tail	phage tail protein	A0A2R9YJM0	Escherichia_phage	2.8e-58	97.2
WP_001152612.1\|504905_505604_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	2.1e-132	98.7
WP_033556180.1\|505608_506352_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	4.3e-147	96.8
WP_122990320.1\|506288_506921_+\|tail	tail assembly protein	C6ZCZ4	Enterobacteria_phage	6.7e-93	96.2
WP_022296423.1\|506981_510464_+	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	90.3
WP_022296424.1\|510522_512922_+\|tail	prophage tail fiber N-terminal domain-containing protein	I1TE37	Escherichia_virus	1.0e-72	38.6
WP_022296425.1\|512918_513200_+	hypothetical protein	A0A1X7QHA1	Escherichia_phage	2.9e-16	45.7
513392:513406	attR	NA	NA	NA	NA

DBSCAN-SWA_2

828920 : 873742

Enterobacteria_phage(55.81%)

protease,terminase,transposase,integrase,portal,lysis,tail

attL 815897:815911|attR 832362:832376

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
815897:815911	attL	NA	NA	NA	NA
WP_016232059.1\|828920_830201_-\|integrase	site-specific integrase	B6DZ48	Enterobacteria_phage	1.5e-155	62.1
WP_000005552.1\|830235_830487_-	excisionase family protein	S4TND0	Salmonella_phage	2.2e-15	50.0
WP_024009056.1\|830559_833031_-	exonuclease	A0A192Y6E0	Salmonella_phage	8.5e-59	56.7
832362:832376	attR	NA	NA	NA	NA
WP_001083280.1\|833124_833316_-\|lysis	lysis protein YdfD	NA	NA	NA	NA
WP_000854559.1\|833312_833501_-	cell division inhibition protein DicB	NA	NA	NA	NA
WP_000344950.1\|833987_834563_-	hypothetical protein	NA	NA	NA	NA
WP_000379557.1\|834564_834720_-	DUF1391 family protein	M4QQ57	Salicola_phage	2.3e-07	53.2
WP_001003381.1\|834912_835320_-	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	2.5e-24	46.2
WP_000476994.1\|835397_835625_+	transcriptional regulator	NA	NA	NA	NA
WP_000705349.1\|835608_836130_+	hypothetical protein	NA	NA	NA	NA
WP_042043081.1\|836110_837076_+	phage O protein family	U5P0A0	Shigella_phage	5.0e-55	60.2
WP_042043083.1\|837116_837539_+	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	6.7e-65	92.1
WP_001366387.1\|837535_837769_+	hypothetical protein	I6S1S6	Salmonella_phage	2.9e-17	67.9
WP_001595803.1\|837822_838488_+	epoxyqueuosine reductase QueH	NA	NA	NA	NA
WP_059346558.1\|839043_839256_+	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	3.9e-29	95.7
WP_000980999.1\|839472_839724_+	hypothetical protein	NA	NA	NA	NA
WP_001309521.1\|839790_840069_+	hypothetical protein	NA	NA	NA	NA
WP_104731921.1\|840070_841120_+	DUF968 domain-containing protein	U5P0K4	Shigella_phage	4.8e-112	57.0
WP_001047133.1\|841133_841886_+	antitermination protein	Q8SBE4	Shigella_phage	1.3e-130	94.8
WP_000066484.1\|842561_842777_+	cold shock-like protein CspB	A0A1W6JNX5	Morganella_phage	3.4e-25	76.5
WP_000839590.1\|843530_843746_+\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	1.1e-31	94.4
WP_000189915.1\|843750_844062_+	YdfR family protein	K7PGU6	Enterobacteria_phage	2.0e-26	64.6
WP_001092971.1\|844058_844592_+	lysozyme	K7PLY1	Enterobacteria_phage	6.4e-97	93.2
WP_001071769.1\|844588_845086_+	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	2.9e-06	29.5
WP_000066495.1\|845449_845662_+	cold shock protein CspI	A0A1W6JNX5	Morganella_phage	1.2e-22	74.3
WP_071524604.1\|845672_845861_+	cold-shock protein	NA	NA	NA	NA
WP_122134696.1\|845863_845929_+	hypothetical protein	NA	NA	NA	NA
WP_001309517.1\|846008_846164_+	hypothetical protein	NA	NA	NA	NA
WP_001019606.1\|846335_846509_+	addiction module toxin, GnsA/GnsB family	NA	NA	NA	NA
WP_000035577.1\|846660_847071_-	DUF1398 domain-containing protein	C6ZCX4	Enterobacteria_phage	1.2e-63	89.7
WP_001031431.1\|847371_847578_+	hypothetical protein	A0A0K2FJ18	Enterobacteria_phage	6.7e-26	91.2
WP_000244358.1\|848122_849496_+\|transposase	IS4-like element ISEc13 family transposase	NA	NA	NA	NA
WP_000421825.1\|849697_850237_+	DUF1441 family protein	A5LH26	Enterobacteria_phage	1.8e-94	100.0
WP_000507031.1\|850245_852345_+\|terminase	phage terminase large subunit family protein	A5LH27	Enterobacteria_phage	0.0e+00	99.6
WP_001072975.1\|852341_852554_+	hypothetical protein	A5LH28	Enterobacteria_phage	1.1e-31	100.0
WP_072134767.1\|852481_854062_+\|portal	phage portal protein	K7PJP3	Enterobacteria_phage	2.1e-289	99.8
WP_001360054.1\|854006_856034_+\|protease	Clp protease ClpP	A5LH30	Enterobacteria_phage	0.0e+00	99.7
WP_001097045.1\|856120_856444_+	DUF2190 family protein	K7PLV6	Enterobacteria_phage	8.5e-52	100.0
WP_001283153.1\|856436_856712_+	DNA breaking-rejoining protein	K7PH43	Enterobacteria_phage	2.3e-45	100.0
WP_000677120.1\|856723_857314_+\|tail	phage tail protein	A5LH33	Enterobacteria_phage	7.2e-81	80.1
WP_001079410.1\|857310_857712_+\|tail	tail protein	A0A291AWY2	Escherichia_phage	2.4e-72	99.2
WP_000211128.1\|857722_858466_+\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	1.6e-130	98.0
WP_001298500.1\|858526_858913_+\|tail	phage minor tail protein G	K7PLV8	Enterobacteria_phage	3.3e-66	100.0
WP_001161009.1\|858921_859251_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	7.6e-56	100.0
WP_000372041.1\|859222_862288_+\|tail	phage tail tape measure protein	K7PKI9	Enterobacteria_phage	0.0e+00	98.3
WP_000447253.1\|862287_862617_+\|tail	phage tail protein	A5LH39	Enterobacteria_phage	1.7e-60	100.0
WP_001152401.1\|862626_863325_+\|tail	phage minor tail protein L	A5LH40	Enterobacteria_phage	6.6e-134	99.6
WP_015912503.1\|863329_864073_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	9.2e-150	98.0
WP_015912502.1\|863970_864618_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.5e-111	95.8
WP_000515688.1\|864678_868092_+	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	97.0
WP_000290533.1\|868152_870525_+\|tail	prophage tail fiber N-terminal domain-containing protein	A0A1X7QGG5	Escherichia_phage	1.4e-167	69.3
WP_000654143.1\|870524_870806_+	hypothetical protein	A0A1X7QHA1	Escherichia_phage	1.6e-17	47.8
WP_001353819.1\|870815_871856_+\|tail	tail fiber domain-containing protein	A0A0E3M4A9	Enterobacteria_phage	1.4e-124	67.3
WP_000355601.1\|871898_872192_+	hypothetical protein	NA	NA	NA	NA
WP_000086527.1\|872419_873010_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	1.6e-24	38.8
WP_000836768.1\|873326_873560_-	cold shock protein YdfK	A0A192Y6D5	Salmonella_phage	1.1e-32	88.3
WP_120795384.1\|873628_873742_-	hypothetical protein	A0A1C9IHU6	Salmonella_phage	8.4e-07	80.6

DBSCAN-SWA_3

1418008 : 1424315

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001100804.1\|1418008_1418554_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	3.5e-50	57.3
WP_000857516.1\|1418558_1419437_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.1e-106	64.1
WP_001524985.1\|1419495_1420395_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	2.6e-29	35.6
WP_000699403.1\|1420394_1421480_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	5.7e-100	53.6
WP_000183060.1\|1421852_1422746_-	UTP--glucose-1-phosphate uridylyltransferase GalF	A0A127AW70	Bacillus_phage	1.0e-46	42.0
WP_001115961.1\|1422920_1424315_-	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	8.3e-19	32.2

DBSCAN-SWA_4

1461418 : 1575367

113

Enterobacteria_phage(41.67%)

terminase,capsid,transposase,tRNA,portal,lysis,head,holin,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000244358.1\|1461418_1462792_-\|transposase	IS4-like element ISEc13 family transposase	NA	NA	NA	NA
WP_100692412.1\|1463203_1463260_-	type I toxin-antitoxin system Ibs family toxin	NA	NA	NA	NA
WP_001525001.1\|1463538_1464786_+	multidrug efflux RND transporter subunit MdtA	NA	NA	NA	NA
WP_021576246.1\|1464785_1467908_+	multidrug efflux RND transporter permease subunit MdtB	NA	NA	NA	NA
WP_021576247.1\|1467908_1470986_+	multidrug efflux RND transporter permease subunit MdtC	NA	NA	NA	NA
WP_001527272.1\|1470986_1472402_+	MFS transporter	NA	NA	NA	NA
WP_000675178.1\|1472398_1473802_+	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	7.0e-34	29.8
WP_000137877.1\|1473798_1474521_+	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	3.7e-31	33.6
WP_021539982.1\|1474700_1475033_+	YegP family protein	NA	NA	NA	NA
WP_000476014.1\|1475179_1476541_+\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	1.9e-217	99.7
WP_001441996.1\|1477040_1477358_-	hypothetical protein	NA	NA	NA	NA
WP_000807362.1\|1477773_1478673_+	lipid kinase YegS	A0A1V0SBJ0	Catovirus	1.3e-12	29.0
WP_000178556.1\|1478754_1479534_-	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_021555541.1\|1479633_1480674_-	galactitol-1-phosphate 5-dehydrogenase	NA	NA	NA	NA
WP_000823289.1\|1482079_1482364_-	PTS galactitol transporter subunit IIB	NA	NA	NA	NA
WP_000182889.1\|1482394_1482847_-	PTS galactitol transporter subunit IIA	NA	NA	NA	NA
WP_021576252.1\|1482856_1484119_-	tagatose-bisphosphate aldolase subunit GatZ	NA	NA	NA	NA
WP_001592309.1\|1484147_1485002_-	tagatose-bisphosphate aldolase subunit GatY	NA	NA	NA	NA
WP_000129551.1\|1485228_1486281_-	class I fructose-bisphosphate aldolase	NA	NA	NA	NA
WP_000858523.1\|1486537_1487815_+	MFS transporter	NA	NA	NA	NA
WP_021576253.1\|1487811_1488816_+	ADP-ribosylglycohydrolase family protein	A0A1S6UB21	Serratia_phage	2.0e-14	28.7
WP_000011979.1\|1488812_1489778_+	sugar kinase	NA	NA	NA	NA
WP_000434047.1\|1489751_1490498_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_021576254.1\|1490549_1491368_-	glycoside hydrolase family 25 protein	D0R7H8	Paenibacillus_phage	1.9e-23	38.0
WP_000822280.1\|1491432_1492233_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA
WP_001527277.1\|1492229_1493018_-	hydroxyethylthiazole kinase	NA	NA	NA	NA
WP_000019944.1\|1493240_1493513_-	Ni(II)/Co(II)-binding transcriptional repressor RcnR	NA	NA	NA	NA
WP_000134614.1\|1493633_1494458_+	nickel/cobalt efflux protein RcnA	NA	NA	NA	NA
WP_000153067.1\|1494676_1495015_+	Ni(II)/Co(II) efflux transporter accessory subunit RcnB	NA	NA	NA	NA
WP_000244358.1\|1495201_1496575_+\|transposase	IS4-like element ISEc13 family transposase	NA	NA	NA	NA
WP_001527282.1\|1496654_1497689_-	putative fimbrial-like adhesin protein	NA	NA	NA	NA
WP_022296301.1\|1497704_1500185_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_000677331.1\|1500200_1500875_-	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_000830465.1\|1500955_1501498_-	fimbrial protein	NA	NA	NA	NA
WP_001005448.1\|1502328_1503438_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA
WP_001296226.1\|1503569_1505603_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	2.3e-54	27.4
WP_033556137.1\|1505743_1509532_+	WGR and DUF4132 domain-containing protein	NA	NA	NA	NA
WP_001527292.1\|1509541_1513174_+	DUF4132 domain-containing protein	NA	NA	NA	NA
WP_001525031.1\|1514182_1515271_+	MoxR family ATPase	NA	NA	NA	NA
WP_022296305.1\|1515281_1517561_+	hypothetical protein	NA	NA	NA	NA
WP_059338323.1\|1517553_1518690_+	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	1.6e-161	97.1
WP_022296306.1\|1518686_1520690_+	SWIM zinc finger family protein	Q9EYF6	Enterobacteria_phage	0.0e+00	95.2
WP_001296231.1\|1520814_1521276_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	3.2e-76	99.3
WP_001295430.1\|1521316_1521787_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
WP_000598641.1\|1521833_1522553_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_001295431.1\|1522549_1524235_-	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
WP_001261928.1\|1524749_1524998_+	DinI-like family protein	H6WZN4	Escherichia_phage	1.8e-30	84.0
WP_000355615.1\|1525115_1525412_-	hypothetical protein	NA	NA	NA	NA
WP_001204583.1\|1525421_1525700_-	hypothetical protein	A0A0E3GMJ7	Enterobacteria_phage	3.0e-21	46.2
WP_104731927.1\|1525696_1527757_-\|tail	prophage tail fiber N-terminal domain-containing protein	A0A1X7QGG5	Escherichia_phage	1.2e-151	65.5
WP_001530022.1\|1527908_1528508_-	Ail/Lom family outer membrane beta-barrel protein	H6WZM8	Escherichia_phage	6.5e-106	93.0
WP_104731928.1\|1528575_1532268_-	DUF1983 domain-containing protein	A0A0P0ZCI5	Stx2-converting_phage	0.0e+00	85.6
WP_032300536.1\|1532611_1533244_-\|tail	tail assembly protein	Q9EYE5	Enterobacteria_phage	4.2e-103	91.8
WP_001351101.1\|1533189_1533933_-\|tail	phage tail protein	Q6H9T4	Enterobacteria_phage	6.1e-146	96.4
WP_001327694.1\|1533938_1534637_-\|tail	phage minor tail protein L	S5M7Q4	Escherichia_phage	7.6e-130	97.0
WP_000847298.1\|1534636_1534966_-\|tail	phage tail protein	Q687F2	Enterobacteria_phage	4.3e-59	100.0
WP_104731929.1\|1534962_1537539_-\|tail	phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	84.6
WP_000533402.1\|1537519_1537933_-\|tail	phage tail assembly protein T	S5MDP5	Escherichia_phage	1.6e-42	82.2
WP_001299690.1\|1537959_1538391_-\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	2.4e-41	67.4
WP_000235034.1\|1538409_1539156_-\|tail	phage tail protein	Q687F6	Enterobacteria_phage	5.6e-123	93.0
WP_000683079.1\|1539163_1539559_-\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	1.5e-58	82.4
WP_000974994.1\|1539555_1540131_-\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	3.7e-50	57.8
WP_001204533.1\|1540146_1540500_-\|tail	tail attachment protein	A0A0K2FJB7	Enterobacteria_phage	1.9e-41	70.1
WP_000201498.1\|1540492_1540876_-	hypothetical protein	NA	NA	NA	NA
WP_001530577.1\|1540927_1541956_-\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	6.6e-114	61.9
WP_104731930.1\|1542013_1542361_-\|head	head decoration protein	C6ZCY1	Enterobacteria_phage	3.7e-21	54.8
WP_001530579.1\|1542397_1543903_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	1.2e-100	53.7
WP_021524278.1\|1543892_1545485_-\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	3.8e-185	61.3
WP_000259002.1\|1545481_1545688_-\|head,tail	head-tail joining protein	K7PM10	Enterobacteria_phage	7.9e-11	56.9
WP_016247622.1\|1545671_1547600_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	7.2e-263	66.5
WP_000235436.1\|1547571_1548081_-\|terminase	terminase small subunit	A0A1I9KFT4	Aeromonas_phage	1.6e-12	32.7
WP_001329960.1\|1548484_1548670_+	DUF3950 domain-containing protein	A0A0K2FIR8	Escherichia_phage	3.2e-19	90.4
WP_000347013.1\|1548802_1548943_-	hypothetical protein	NA	NA	NA	NA
WP_001028465.1\|1549651_1550173_-	KilA-N domain-containing protein	K7P7K9	Enterobacteria_phage	1.5e-93	100.0
WP_001082564.1\|1550374_1550812_-\|lysis	lysis protein	A0A088CBQ1	Shigella_phage	2.3e-68	95.2
WP_000992063.1\|1551110_1551644_-	lysozyme	Q6H9V6	Enterobacteria_phage	2.1e-100	95.5
WP_104731964.1\|1551707_1552058_-	YdfR family protein	B6DZ91	Enterobacteria_phage	6.6e-50	90.2
WP_000284510.1\|1552062_1552278_-\|holin	class II holin family protein	G9L6J5	Escherichia_phage	9.0e-34	100.0
WP_001514225.1\|1552353_1552623_-	DUF826 domain-containing protein	S5MW40	Escherichia_phage	1.8e-10	76.4
WP_001405838.1\|1552660_1552843_-	DUF1378 family protein	A0A2R2Z345	Escherichia_phage	9.4e-24	91.5
WP_001530582.1\|1552994_1554956_-	SASA family carbohydrate esterase	A0A0P0ZBH7	Stx2-converting_phage	5.1e-240	64.5
WP_000301785.1\|1555726_1556440_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_000917737.1\|1556574_1556772_-	hypothetical protein	S5MQK8	Escherichia_phage	2.6e-27	96.9
WP_000360285.1\|1557050_1557668_-	hypothetical protein	NA	NA	NA	NA
WP_001204814.1\|1557743_1558115_-	antitermination protein Q	Q8W638	Enterobacteria_phage	8.3e-35	59.2
WP_001358491.1\|1558132_1559122_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	4.7e-194	99.4
WP_001072669.1\|1559129_1559945_-	KilA-N domain-containing protein	U5P4K5	Shigella_phage	8.5e-149	99.3
WP_000767110.1\|1560107_1560503_-	RusA family crossover junction endodeoxyribonuclease	A0A0P0ZD39	Stx2-converting_phage	5.7e-66	98.4
WP_000210143.1\|1560499_1560826_-	LexA family transcriptional regulator	A0A291AWY9	Escherichia_phage	2.7e-53	98.1
WP_000066917.1\|1560822_1561476_-	phage N-6-adenine-methyltransferase	A5LH72	Enterobacteria_phage	1.9e-127	99.5
WP_077466986.1\|1561475_1561970_-	PerC family transcriptional regulator	A0A291AWV6	Escherichia_phage	7.3e-87	98.1
WP_001571190.1\|1561966_1562785_-	helix-turn-helix domain-containing protein	A0A291AWW0	Escherichia_phage	5.2e-122	98.9
WP_001571189.1\|1562781_1563006_-	hypothetical protein	A5LH70	Enterobacteria_phage	2.8e-38	98.6
WP_001087340.1\|1563002_1564148_-	Rha family transcriptional regulator	A5LH69	Enterobacteria_phage	3.1e-173	83.5
WP_000526669.1\|1564144_1564702_-	hypothetical protein	Q8SBF4	Shigella_phage	5.3e-94	94.1
WP_001191669.1\|1564694_1564955_-	helix-turn-helix transcriptional regulator	K7PJQ8	Enterobacteria_phage	5.4e-41	100.0
WP_001387485.1\|1565052_1565745_+	helix-turn-helix domain-containing protein	S5FUZ3	Shigella_phage	6.4e-121	96.1
WP_001555122.1\|1566447_1566810_+	hypothetical protein	U5P4J6	Shigella_phage	2.2e-56	94.2
WP_000081287.1\|1566875_1567700_+	DUF2303 family protein	U5P439	Shigella_phage	6.0e-150	100.0
WP_000008165.1\|1567827_1568364_+	5'-deoxynucleotidase	U5P0T3	Shigella_phage	4.8e-100	98.3
WP_001555123.1\|1568354_1568717_+	phage protein	K7PH61	Enterobacteria_phage	1.5e-65	96.7
WP_000111289.1\|1568713_1568917_+	hypothetical protein	K7PLX1	Enterobacteria_phage	1.0e-31	98.5
WP_000476207.1\|1568909_1569149_+	hypothetical protein	S5MQM0	Escherichia_phage	9.1e-35	96.2
WP_001555124.1\|1569145_1569745_+	ead/Ea22-like family protein	Q8VNQ2	Enterobacteria_phage	1.2e-104	94.5
WP_001555125.1\|1570258_1570777_+	hypothetical protein	A0A088CE95	Shigella_phage	1.3e-65	74.6
WP_000457723.1\|1570861_1571104_+	DUF4222 domain-containing protein	Q6H9Z8	Enterobacteria_phage	4.3e-32	87.5
WP_001030154.1\|1571107_1571242_+	hypothetical protein	A0A1B5FPC2	Escherichia_phage	4.2e-21	93.2
WP_001555126.1\|1571260_1571515_+	excisionase family protein	Q859D3	Escherichia_coli_phage	3.3e-43	98.8
WP_016235940.1\|1571548_1572835_+	DUF3596 domain-containing protein	A0A0N7KZF5	Stx2-converting_phage	9.3e-251	98.8
WP_059338313.1\|1572870_1573557_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	1.9e-101	98.4
WP_001216963.1\|1573616_1573724_+	protein YohO	NA	NA	NA	NA
WP_000783109.1\|1573704_1574436_-	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA
WP_000569347.1\|1574440_1575367_-	glycine betaine ABC transporter ATP binding protein YehX	G3M9Y6	Bacillus_virus	1.3e-23	30.8

DBSCAN-SWA_5

1987629 : 2060722

Salmonella_phage(45.83%)

terminase,transposase,capsid,tRNA,plate,holin,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000940023.1\|1987629_1988370_-\|tRNA	tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ	NA	NA	NA	NA
WP_000553451.1\|1988488_1989292_+	inositol-1-monophosphatase	NA	NA	NA	NA
WP_022296792.1\|1989436_1990291_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_000983028.1\|1990481_1991762_+	stationary phase inducible protein CsiE	NA	NA	NA	NA
WP_000244186.1\|1991753_1992893_-	3-phenylpropionate MFS transporter	NA	NA	NA	NA
WP_001296295.1\|1993262_1993685_+	DoxX family protein	NA	NA	NA	NA
WP_104731936.1\|1993759_1995107_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	3.0e-74	52.1
WP_022296790.1\|1995168_1996041_-	aldose 1-epimerase	NA	NA	NA	NA
WP_000700787.1\|1996052_1997147_-	alcohol dehydrogenase catalytic domain-containing protein	NA	NA	NA	NA
WP_001276657.1\|1997179_1998178_-	ABC transporter permease	NA	NA	NA	NA
WP_001525393.1\|1998202_1999714_-	sugar ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	4.0e-11	23.0
WP_001124926.1\|1999736_2000720_-	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_001527538.1\|2000816_2004098_-	DUF5107 domain-containing protein	NA	NA	NA	NA
WP_001527539.1\|2004215_2005409_+	ROK family protein	NA	NA	NA	NA
WP_000919159.1\|2005472_2006726_-	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	7.8e-101	52.7
WP_000883120.1\|2007053_2008244_+	NO-inducible flavohemoprotein	NA	NA	NA	NA
WP_000717694.1\|2008288_2008627_-	nitrogen regulatory protein P-II	NA	NA	NA	NA
WP_001314050.1\|2008687_2010022_-	two-component system response regulator GlrR	W8CYM9	Bacillus_phage	3.9e-10	37.3
WP_001215879.1\|2010011_2010725_-	two-component system QseEF-associated lipoprotein QseG	NA	NA	NA	NA
WP_059338211.1\|2010889_2012317_-	two component system sensor histidine kinase QseE/GlrK	W8CYF6	Bacillus_phage	6.7e-16	24.9
WP_022296789.1\|2012892_2016780_-	phosphoribosylformylglycinamidine synthase	A9YX36	Burkholderia_phage	6.5e-130	59.2
WP_000734193.1\|2017037_2018594_+	membrane-bound lytic murein transglycosylase MltF	NA	NA	NA	NA
WP_001296300.1\|2018590_2019127_-\|tRNA	tRNA adenosine(34) deaminase TadA	NA	NA	NA	NA
WP_000190644.1\|2019151_2019787_-	phosphatidylglycerophosphatase C	NA	NA	NA	NA
WP_001296301.1\|2019995_2020844_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_001039127.1\|2021723_2022569_+	hypothetical protein	NA	NA	NA	NA
WP_053899353.1\|2022918_2023437_+\|tail	tail fiber protein	A0A0F7LCR3	Escherichia_phage	3.1e-56	62.6
WP_059338209.1\|2023436_2024039_+\|tail	tail fiber assembly protein	M1SV83	Escherichia_phage	1.0e-98	89.0
WP_059338210.1\|2024010_2024448_-\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	1.4e-49	68.5
WP_059346512.1\|2024449_2025136_-	hypothetical protein	A0A0M3ULD8	Salmonella_phage	3.7e-28	70.0
WP_059338207.1\|2025135_2025816_-	DUF2612 domain-containing protein	A0A0M5M1K4	Salmonella_phage	2.9e-102	77.9
WP_001519786.1\|2025812_2027012_-\|plate	baseplate J/gp47 family protein	A0A0M4RD32	Salmonella_phage	8.3e-185	83.4
WP_001270632.1\|2027011_2027365_-	hypothetical protein	A0A0M4R339	Salmonella_phage	9.0e-55	89.7
WP_001519787.1\|2027364_2028117_-	hypothetical protein	A0A0M5M1K7	Salmonella_phage	2.9e-87	66.3
WP_000095759.1\|2028174_2028747_-	DUF2335 domain-containing protein	NA	NA	NA	NA
WP_021578671.1\|2029072_2029417_-	hypothetical protein	A0A0M4RTY3	Salmonella_phage	2.5e-33	86.8
WP_021580413.1\|2029420_2030482_-	hypothetical protein	A0A0M4QX01	Salmonella_phage	7.7e-158	81.7
WP_021580414.1\|2030484_2030787_-	hypothetical protein	A0A0M4R5B7	Salmonella_phage	1.8e-48	91.0
WP_001420197.1\|2030786_2031374_-	hypothetical protein	A0A0M3ULD5	Salmonella_phage	6.9e-84	88.5
WP_046960513.1\|2031373_2033362_-	lytic transglycosylase	A0A0M4REK7	Salmonella_phage	2.3e-272	74.7
WP_000393962.1\|2033539_2033992_-	hypothetical protein	A0A0M4S6U8	Salmonella_phage	6.1e-56	72.7
WP_104731937.1\|2033995_2034436_-	DUF3277 family protein	A0A2H4J619	uncultured_Caudovirales_phage	4.6e-56	74.7
WP_021578676.1\|2034446_2035592_-	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	8.8e-160	73.5
WP_001298391.1\|2035595_2036159_-	hypothetical protein	A0A0M4R331	Salmonella_phage	1.3e-79	75.7
WP_001519792.1\|2036133_2036523_-	hypothetical protein	A0A0M3ULK0	Salmonella_phage	3.3e-66	95.3
WP_021517253.1\|2036509_2037064_-	hypothetical protein	A0A0M4S631	Salmonella_phage	2.6e-80	83.7
WP_001125665.1\|2037060_2037468_-	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	8.7e-70	95.6
WP_160393966.1\|2037466_2037700_+	hypothetical protein	NA	NA	NA	NA
WP_000627483.1\|2037696_2038638_-	DUF2184 domain-containing protein	A0A0M3ULD3	Salmonella_phage	2.9e-156	87.2
WP_001066729.1\|2038649_2039156_-	hypothetical protein	A0A0M4QWZ6	Salmonella_phage	1.1e-69	79.3
WP_021578677.1\|2039159_2040380_-	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	1.2e-199	87.8
WP_137462770.1\|2040394_2041129_-\|capsid	minor capsid protein	A0A0M4REK0	Salmonella_phage	4.0e-97	85.1
WP_021578679.1\|2041019_2042486_-	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	1.8e-261	92.0
WP_021580416.1\|2042485_2044108_-	hypothetical protein	A0A0M5M1R6	Salmonella_phage	0.0e+00	95.4
WP_000162795.1\|2044110_2044683_-\|terminase	terminase small subunit	A0A2H4J480	uncultured_Caudovirales_phage	6.1e-61	69.6
WP_021578681.1\|2044744_2045269_-	hypothetical protein	K7P6W1	Enterobacteria_phage	1.3e-41	65.4
WP_001194119.1\|2045252_2045729_-	glycoside hydrolase family protein	Q8SBE0	Shigella_phage	2.1e-86	96.2
WP_059338206.1\|2045732_2046074_-\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	1.6e-53	92.8
WP_001174015.1\|2046519_2046861_-	hypothetical protein	NA	NA	NA	NA
WP_001244506.1\|2046892_2047315_-	antitermination protein	Q8W638	Enterobacteria_phage	8.8e-41	63.3
WP_021578683.1\|2047596_2049789_-	hypothetical protein	B6SCY1	Bacteriophage	2.7e-173	71.4
WP_000170998.1\|2049792_2050005_-	helix-turn-helix transcriptional regulator	A0A0R6PHL1	Moraxella_phage	7.9e-06	42.9
WP_000049986.1\|2050125_2050749_+	helix-turn-helix domain-containing protein	A0A1I9KG86	Aeromonas_phage	3.3e-36	44.8
WP_000801676.1\|2051382_2051532_+	hypothetical protein	NA	NA	NA	NA
WP_000051353.1\|2051528_2052431_+	hypothetical protein	Q3LZP9	Bacteriophage	6.1e-07	54.4
WP_001520087.1\|2052433_2053735_+	DUF2800 domain-containing protein	B6SCX9	Bacteriophage	2.3e-132	55.7
WP_000769011.1\|2053750_2054299_+	DUF2815 family protein	Q775A5	Bordetella_phage	1.6e-66	65.9
WP_001520089.1\|2054350_2054992_+	hypothetical protein	H6WRY3	Salmonella_phage	1.8e-69	64.1
WP_000215799.1\|2054985_2055675_-	hypothetical protein	NA	NA	NA	NA
WP_001520090.1\|2055736_2057800_+	hypothetical protein	Q775A3	Bordetella_phage	7.9e-276	67.8
WP_001520092.1\|2057805_2058021_+	ANR family transcriptional regulator	NA	NA	NA	NA
WP_000637722.1\|2058017_2058317_+	DUF4406 domain-containing protein	A0A0U2SAZ1	Escherichia_phage	5.5e-29	64.2
WP_000312946.1\|2058306_2058576_+	VRR-NUC domain-containing protein	B6SD64	Bacteriophage	3.0e-26	65.9
WP_021580418.1\|2058581_2059292_-	hypothetical protein	NA	NA	NA	NA
WP_001520094.1\|2059330_2060722_+	DEAD/DEAH box helicase	Q3LZN8	Bacteriophage	6.0e-211	72.8

DBSCAN-SWA_6

2190201 : 2197341

Escherichia_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_104731940.1\|2190201_2192763_+	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	2.7e-31	20.8
WP_022296754.1\|2192868_2193525_+	protein-serine/threonine phosphatase	A0A077SLQ6	Escherichia_phage	6.2e-49	45.2
WP_001296319.1\|2193575_2194343_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	9.7e-70	57.4
WP_000847996.1\|2194538_2195447_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	1.9e-117	76.2
WP_000590411.1\|2195443_2196706_+	3-oxo-tetronate kinase	A0A077SLJ7	Escherichia_phage	2.2e-135	61.4
WP_001279001.1\|2196702_2197341_+	aldolase	A0A077SK32	Escherichia_phage	2.8e-83	75.0

DBSCAN-SWA_7

4381297 : 4473873

Shigella_phage(50.0%)

protease,terminase,transposase,integrase,capsid,head,portal,plate,holin,tail

attL 4423942:4423990|attR 4464881:4464929

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000224517.1\|4381297_4382644_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_001524049.1\|4382646_4383171_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_001524050.1\|4383167_4384460_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_001524051.1\|4384464_4385514_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_001524054.1\|4385477_4387319_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_001524058.1\|4387324_4387750_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_104731953.1\|4387754_4389239_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_000041480.1\|4389261_4389765_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_001142963.1\|4390470_4390989_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_001524064.1\|4391209_4393441_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	8.0e-24	25.3
WP_001524065.1\|4393453_4394218_+	DUF4123 domain-containing protein	NA	NA	NA	NA
WP_032144280.1\|4395223_4395748_+	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_001518352.1\|4395732_4396275_+	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_001524069.1\|4396259_4398353_+	DUF2235 domain-containing protein	NA	NA	NA	NA
WP_000227712.1\|4399620_4400124_+	hypothetical protein	NA	NA	NA	NA
WP_001298174.1\|4400214_4400703_+	integrating conjugative element protein	NA	NA	NA	NA
WP_001468559.1\|4400973_4401744_-	2-oxoglutaramate amidase	NA	NA	NA	NA
WP_000532690.1\|4401897_4402371_+	C-lysozyme inhibitor	NA	NA	NA	NA
WP_001526639.1\|4402413_4404858_-	acyl-CoA dehydrogenase FadE	NA	NA	NA	NA
WP_000284050.1\|4405097_4405676_+	D-sedoheptulose 7-phosphate isomerase	A0A067XQR2	Caulobacter_phage	1.1e-14	32.0
WP_059338284.1\|4405880_4406654_+	class II glutamine amidotransferase	NA	NA	NA	NA
WP_001225679.1\|4406624_4407365_-	murein L,D-transpeptidase	NA	NA	NA	NA
WP_000093933.1\|4407676_4408426_+	C40 family peptidase	A0A1V0DZX6	Clostridioides_phage	1.2e-19	37.7
WP_000006239.1\|4408601_4409099_+\|transposase	REP-associated tyrosine transposase RayT	NA	NA	NA	NA
WP_001526640.1\|4409214_4410954_-	flagellar type III secretion system protein FlhA	NA	NA	NA	NA
WP_000207551.1\|4410898_4411684_+	putative lateral flagellar export/assembly protein LafU	NA	NA	NA	NA
WP_001226168.1\|4411754_4412810_+	DNA polymerase IV	NA	NA	NA	NA
WP_000554758.1\|4412861_4413155_+	type I toxin-antitoxin system antitoxin YafN	NA	NA	NA	NA
WP_001263500.1\|4413157_4413556_+	type II toxin-antitoxin system mRNA interferase toxin YafO	NA	NA	NA	NA
WP_071589393.1\|4413565_4414018_+	GNAT family N-acetyltransferase	A0A1X9I687	Streptococcus_phage	1.3e-05	27.5
WP_022296578.1\|4414207_4415347_+	RNA ligase RtcB family protein	A0A222ZKP1	Mycobacterium_phage	3.2e-29	30.1
WP_059346544.1\|4415343_4415958_+	peptide chain release factor H	NA	NA	NA	NA
WP_001293022.1\|4416013_4417471_-	cytosol nonspecific dipeptidase	NA	NA	NA	NA
WP_001291991.1\|4417731_4418190_+	xanthine phosphoribosyltransferase	NA	NA	NA	NA
WP_000189575.1\|4418281_4419526_+	esterase FrsA	NA	NA	NA	NA
WP_000174684.1\|4419583_4419985_+	sigma factor-binding protein Crl	NA	NA	NA	NA
WP_000749899.1\|4420085_4421141_-	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	3.5e-118	60.6
WP_001285288.1\|4421429_4422533_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.1e-61	40.4
WP_000893305.1\|4422544_4423798_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	2.6e-96	47.5
4423942:4423990	attL	NA	NA	NA	NA
WP_000051887.1\|4424002_4425166_-\|integrase	site-specific integrase	U5P434	Shigella_phage	2.4e-229	100.0
WP_059338283.1\|4425392_4425698_-	hypothetical protein	U5P0J0	Shigella_phage	1.5e-50	99.0
WP_001242749.1\|4425697_4426060_-	phage protein	U5P092	Shigella_phage	2.1e-67	100.0
WP_000008235.1\|4426050_4426587_-	5'-deoxynucleotidase	S5MW55	Escherichia_phage	8.2e-100	98.9
WP_104731954.1\|4426714_4427539_-	DUF2303 family protein	U5P439	Shigella_phage	5.0e-149	99.6
WP_000135665.1\|4427604_4427967_-	hypothetical protein	Q8SBF8	Shigella_phage	2.5e-60	99.2
WP_001345148.1\|4428669_4429362_-	helix-turn-helix transcriptional regulator	S5FUZ3	Shigella_phage	8.3e-121	96.1
WP_001191669.1\|4429459_4429720_+	helix-turn-helix transcriptional regulator	K7PJQ8	Enterobacteria_phage	5.4e-41	100.0
WP_052970432.1\|4429712_4430264_+	hypothetical protein	K7PGU3	Enterobacteria_phage	1.0e-97	95.1
WP_024249648.1\|4430260_4431409_+	Rha family transcriptional regulator	A0A0P0ZE80	Stx2-converting_phage	3.1e-165	80.2
WP_000620696.1\|4431405_4431630_+	hypothetical protein	A5LH70	Enterobacteria_phage	5.7e-39	100.0
WP_024249647.1\|4431626_4432445_+	helix-turn-helix domain-containing protein	A0A291AWW0	Escherichia_phage	8.9e-122	98.9
WP_072108508.1\|4432441_4432936_+	PerC family transcriptional regulator	K7PJR0	Enterobacteria_phage	7.3e-87	98.8
WP_049144297.1\|4432935_4433589_+	phage N-6-adenine-methyltransferase	A0A0P0ZCC0	Stx2-converting_phage	2.4e-125	98.6
WP_021576792.1\|4433585_4433912_+	LexA repressor	U5P451	Shigella_phage	5.9e-53	99.1
WP_000767113.1\|4433908_4434298_+	RusA family crossover junction endodeoxyribonuclease	A0A0P0ZD39	Stx2-converting_phage	7.1e-69	100.0
WP_021576793.1\|4434317_4435115_+	KilA-N domain-containing protein	A0A0P0ZCS0	Stx2-converting_phage	4.4e-150	99.6
WP_021576794.1\|4435122_4436112_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	1.4e-193	99.1
WP_021576795.1\|4436129_4436471_+	hypothetical protein	A0A0P0ZCW0	Stx2-converting_phage	4.7e-61	99.1
WP_024247596.1\|4436492_4436954_-	hypothetical protein	A0A0P0ZCX2	Stx2-converting_phage	1.2e-72	99.3
WP_000043971.1\|4437024_4438056_-	hypothetical protein	A0A0P0ZDC5	Stx2-converting_phage	1.3e-189	100.0
WP_001120492.1\|4438336_4438663_+\|holin	phage holin, lambda family	U5P0K7	Shigella_phage	1.4e-57	100.0
WP_021576797.1\|4438666_4439143_+	glycoside hydrolase family protein	S5FV07	Shigella_phage	4.1e-87	97.5
WP_021576798.1\|4439126_4439519_+	DUF2570 domain-containing protein	Q8SBD9	Shigella_phage	3.7e-57	91.5
WP_123000322.1\|4439403_4439676_+	peptidase	Q8SBD8	Shigella_phage	1.1e-33	84.1
WP_021576799.1\|4439702_4440053_+	HNH endonuclease	M1FQV2	Enterobacteria_phage	1.2e-62	94.8
WP_000929175.1\|4440178_4440673_+\|terminase	phage terminase small subunit P27 family	U5P067	Shigella_phage	3.9e-88	99.4
WP_128492023.1\|4440906_4442403_+\|terminase	terminase large subunit	A0A1C9IIA1	Salmonella_phage	2.8e-299	99.4
WP_000605606.1\|4442414_4442597_+	hypothetical protein	S5FXQ9	Shigella_phage	1.7e-25	100.0
WP_104731956.1\|4442596_4443838_+\|portal	phage portal protein	U5P411	Shigella_phage	2.9e-241	98.8
WP_001193631.1\|4443815_4444466_+\|head,protease	HK97 family phage prohead protease	U5P4H2	Shigella_phage	2.5e-119	100.0
WP_000257504.1\|4444480_4445686_+\|capsid	phage major capsid protein	M1FPN2	Enterobacteria_phage	3.1e-224	99.8
WP_000601363.1\|4445735_4445936_+	hypothetical protein	S5FNU1	Shigella_phage	1.7e-26	98.5
WP_000927719.1\|4445938_4446262_+\|head,tail	phage gp6-like head-tail connector protein	U5P072	Shigella_phage	1.1e-56	99.1
WP_000702388.1\|4446258_4446669_+\|head	phage head closure protein	M1FJ87	Enterobacteria_phage	5.9e-74	97.8
WP_000213502.1\|4446643_4447150_+	hypothetical protein	M1FPE2	Enterobacteria_phage	1.7e-91	100.0
WP_000779292.1\|4447146_4447707_+	hypothetical protein	M1FQV7	Enterobacteria_phage	1.0e-105	100.0
WP_000497751.1\|4447715_4447886_+	DUF2635 domain-containing protein	Q8SBH3	Shigella_phage	9.3e-26	100.0
WP_061353157.1\|4447869_4449366_+\|tail	phage tail sheath subtilisin-like domain-containing protein	U5P0H3	Shigella_phage	1.0e-277	99.6
WP_064503060.1\|4449365_4449722_+\|tail	phage tail tube protein	U5P076	Shigella_phage	2.0e-62	99.2
WP_000661054.1\|4449721_4449991_+\|tail	phage tail assembly protein	M1FPE4	Enterobacteria_phage	3.5e-43	100.0
WP_059338365.1\|4450132_4451968_+\|tail	phage tail tape measure protein	S5FM63	Shigella_phage	2.9e-306	98.2
WP_125108175.1\|4452028_4453357_+	DNA circularization N-terminal domain-containing protein	Q8SBG8	Shigella_phage	6.1e-245	98.6
WP_000999510.1\|4453353_4454433_+\|plate	baseplate protein	U5P0H6	Shigella_phage	5.3e-207	100.0
WP_001259084.1\|4454432_4454981_+\|plate	phage baseplate assembly protein	U5P081	Shigella_phage	5.1e-97	98.9
WP_128492022.1\|4454980_4455406_+	phage GP46 family protein	U5P0R9	Shigella_phage	1.7e-79	98.6
WP_059338193.1\|4455392_4456451_+\|plate	baseplate J/gp47 family protein	U5P424	Shigella_phage	2.8e-200	98.6
WP_059338194.1\|4456441_4457026_+	YmfQ family protein	O22003	Shigella_phage	1.6e-112	98.5
WP_059338195.1\|4457029_4457680_+	hypothetical protein	S5FKM2	Shigella_phage	1.1e-114	98.6
WP_032144283.1\|4457651_4458086_+\|tail	tail assembly chaperone	S5FXM8	Shigella_phage	5.1e-76	97.2
WP_141095334.1\|4458857_4459907_-	acyltransferase family protein	S5FNR8	Shigella_phage	2.3e-194	98.6
WP_059338196.1\|4463391_4464321_-	glycosyltransferase family 2 protein	S5FKN0	Shigella_phage	7.9e-175	99.7
WP_059338197.1\|4464317_4464680_-	GtrA family protein	U5P0S6	Shigella_phage	2.3e-58	99.2
WP_001524121.1\|4465081_4465420_+	DUF4102 domain-containing protein	E5AGD0	Erwinia_phage	4.8e-21	47.7
4464881:4464929	attR	NA	NA	NA	NA
WP_001059463.1\|4465854_4466349_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_000244358.1\|4467387_4468761_+\|transposase	IS4-like element ISEc13 family transposase	NA	NA	NA	NA
WP_000544830.1\|4471903_4472701_-	IS21-like element IS21 family helper ATPase IstB	U5N3V8	Enterobacteria_phage	1.9e-145	99.6
WP_000952372.1\|4472700_4473873_-\|transposase	IS21-like element IS21 family transposase	U5N3F9	Enterobacteria_phage	3.5e-228	99.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP014110

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

29048 : 57264

Escherichia_phage(33.33%)

integrase,transposase

attL 30713:30733|attR 55712:55732

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000952372.1\|29048_30221_+\|transposase	IS21-like element IS21 family transposase	U5N3F9	Enterobacteria_phage	3.5e-228	99.5
WP_000544830.1\|30220_31018_+	IS21-like element IS21 family helper ATPase IstB	U5N3V8	Enterobacteria_phage	1.9e-145	99.6
30713:30733	attL	NA	NA	NA	NA
WP_001298676.1\|31011_31842_-	DUF1281 domain-containing protein	NA	NA	NA	NA
WP_000343766.1\|32260_33481_-\|transposase	ISL3-like element ISEc53 family transposase	NA	NA	NA	NA
WP_000115885.1\|33499_34018_-	ClbS/DfsB family four-helix bundle protein	NA	NA	NA	NA
WP_000619112.1\|34152_34401_+	DinI-like family protein	Q2A098	Sodalis_phage	1.2e-13	48.0
WP_000109079.1\|34397_34835_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.1e-25	47.6
WP_000340835.1\|36109_36502_-	plasmid partitioning/stability family protein	NA	NA	NA	NA
WP_001103694.1\|36506_37478_-	hypothetical protein	A0A222YXF2	Escherichia_phage	9.7e-67	42.9
WP_000633911.1\|37706_38351_+	AAA family ATPase	A0A222YXS3	Escherichia_phage	8.8e-40	43.5
WP_000239529.1\|38344_38620_+	hypothetical protein	NA	NA	NA	NA
WP_000016979.1\|38757_39567_-\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	7.8e-54	95.5
WP_001159871.1\|39567_39873_-	type II toxin-antitoxin system toxin CcdB	NA	NA	NA	NA
WP_000813634.1\|39874_40093_-	type II toxin-antitoxin system antitoxin CcdA	NA	NA	NA	NA
WP_000244358.1\|41744_43118_-\|transposase	IS4-like element ISEc13 family transposase	Q9JMP3	Wolbachia_phage	2.1e-43	29.1
WP_000990667.1\|43972_44614_+	hypothetical protein	NA	NA	NA	NA
WP_001309253.1\|45788_46766_+	replication initiation protein	J9Q7H0	Salmonella_phage	6.1e-101	59.5
WP_001066947.1\|47008_47749_-\|integrase	tyrosine-type recombinase/integrase	I3WFA4	Macacine_betaherpesvirus	1.6e-24	57.6
WP_001332784.1\|47869_48058_-	hypothetical protein	NA	NA	NA	NA
WP_001072358.1\|48424_49594_+	hypothetical protein	NA	NA	NA	NA
WP_001322642.1\|50440_50713_-	adhesin biosynthesis transcription regulatory family protein	NA	NA	NA	NA
WP_001298664.1\|51955_53926_+	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA
WP_000977394.1\|53932_54724_+	DUF4198 domain-containing protein	NA	NA	NA	NA
WP_001323403.1\|55462_56242_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	1.5e-139	100.0
55712:55732	attR	NA	NA	NA	NA
WP_001310017.1\|56241_57264_-\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	3.2e-201	99.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP014111

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP014110

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection