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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP019090 Xanthomonas oryzae pv. oryzae strain MAI129 chromosome, complete genome 2 crisprs DEDDh,WYL,cas3,csa3,DinG 0 2 22 0

Results visualization

1. NZ_CP019090
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019090_1 30609-30756 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019090_2 2035992-2036191 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP019090_2 2.1|2036039|32|NZ_CP019090|PILER-CR 2036039-2036070 32 NC_049470 Arthrobacter phage TripleJ, complete genome 44378-44409 6 0.812
NZ_CP019090_2 2.1|2036039|32|NZ_CP019090|PILER-CR 2036039-2036070 32 NZ_CP030772 Streptomyces sp. YIM 121038 plasmid pSSP121038, complete sequence 702822-702853 8 0.75
NZ_CP019090_2 2.2|2036118|34|NZ_CP019090|PILER-CR 2036118-2036151 34 NZ_CP015419 Rhodovulum sulfidophilum DSM 1374 plasmid unnamed1, complete sequence 52055-52088 12 0.647
NZ_CP019090_2 2.2|2036118|34|NZ_CP019090|PILER-CR 2036118-2036151 34 NZ_CP015422 Rhodovulum sulfidophilum strain SNK001 plasmid, complete sequence 51955-51988 12 0.647
NZ_CP019090_2 2.2|2036118|34|NZ_CP019090|PILER-CR 2036118-2036151 34 NZ_AP014802 Rhodovulum sulfidophilum plasmid Plasmid2 DNA, complete genome, strain: DSM 2351 17743-17776 12 0.647

1. spacer 2.1|2036039|32|NZ_CP019090|PILER-CR matches to NC_049470 (Arthrobacter phage TripleJ, complete genome) position: , mismatch: 6, identity: 0.812

cggtgagcaggtcgactgccgtgggtgcggta	CRISPR spacer
ccgggcgcaggccgactgccgggggtgcggga	Protospacer
* * * *****.********* ******** *

2. spacer 2.1|2036039|32|NZ_CP019090|PILER-CR matches to NZ_CP030772 (Streptomyces sp. YIM 121038 plasmid pSSP121038, complete sequence) position: , mismatch: 8, identity: 0.75

cggtgagcaggtcgactgccgtgggtgcggta-	CRISPR spacer
aggtgagcaggtcggctgcggtggg-gtgacga	Protospacer
 *************.**** ***** *.*... 

3. spacer 2.2|2036118|34|NZ_CP019090|PILER-CR matches to NZ_CP015419 (Rhodovulum sulfidophilum DSM 1374 plasmid unnamed1, complete sequence) position: , mismatch: 12, identity: 0.647

gtcggcagcgctgggcgcggctttgacaggcggg	CRISPR spacer
cggggcagcgctgggggcggcttcgaccatgaca	Protospacer
   ************ *******.*** .  . .

4. spacer 2.2|2036118|34|NZ_CP019090|PILER-CR matches to NZ_CP015422 (Rhodovulum sulfidophilum strain SNK001 plasmid, complete sequence) position: , mismatch: 12, identity: 0.647

gtcggcagcgctgggcgcggctttgacaggcggg	CRISPR spacer
cggggcagcgctgggggcggcttcgaccatgaca	Protospacer
   ************ *******.*** .  . .

5. spacer 2.2|2036118|34|NZ_CP019090|PILER-CR matches to NZ_AP014802 (Rhodovulum sulfidophilum plasmid Plasmid2 DNA, complete genome, strain: DSM 2351) position: , mismatch: 12, identity: 0.647

gtcggcagcgctgggcgcggctttgacaggcggg	CRISPR spacer
cggggcagcgctgggggcggcttcgaccatgaca	Protospacer
   ************ *******.*** .  . .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 7440 : 60863 39 Leptospira_phage(28.57%) transposase,protease NA
DBSCAN-SWA_2 322091 : 388810 50 Leptospira_phage(37.5%) transposase NA
DBSCAN-SWA_3 492689 : 710177 155 Stenotrophomonas_phage(31.25%) capsid,holin,terminase,transposase,integrase,tRNA,head,protease,plate,portal,tail attL 518316:518360|attR 561298:561342
DBSCAN-SWA_4 761901 : 832816 55 Ralstonia_phage(20.0%) transposase NA
DBSCAN-SWA_5 1073122 : 1135547 43 Leptospira_phage(16.67%) transposase,protease NA
DBSCAN-SWA_6 1243047 : 1394474 108 Ralstonia_phage(15.38%) transposase,plate,protease NA
DBSCAN-SWA_7 1419897 : 1527179 87 Ralstonia_phage(18.75%) transposase,tRNA,protease NA
DBSCAN-SWA_8 1569867 : 1637834 57 Ralstonia_phage(33.33%) transposase,tRNA,protease NA
DBSCAN-SWA_9 1698468 : 1768129 54 Leptospira_phage(20.0%) transposase,integrase,tRNA attL 1696859:1696875|attR 1771642:1771658
DBSCAN-SWA_10 1839079 : 1848967 7 Micromonas_sp._RCC1109_virus(16.67%) tRNA NA
DBSCAN-SWA_11 1974568 : 2061174 53 uncultured_Caudovirales_phage(34.78%) transposase,tRNA NA
DBSCAN-SWA_12 2139414 : 2201855 48 Ralstonia_phage(25.0%) transposase,tRNA,protease NA
DBSCAN-SWA_13 2220791 : 2367007 52 Tupanvirus(46.67%) transposase,plate NA
DBSCAN-SWA_14 2617139 : 2707955 54 Ralstonia_phage(14.29%) transposase,tRNA,protease NA
DBSCAN-SWA_15 2901947 : 3018456 84 Ralstonia_phage(13.33%) transposase,tRNA,protease NA
DBSCAN-SWA_16 3409663 : 3464148 36 Acidithiobacillus_phage(33.33%) transposase,tRNA NA
DBSCAN-SWA_17 3553087 : 3573853 15 Ralstonia_phage(60.0%) transposase,tRNA NA
DBSCAN-SWA_18 3819001 : 3885671 46 Staphylococcus_phage(14.29%) transposase,tRNA,protease NA
DBSCAN-SWA_19 3905471 : 3911841 6 Enterobacteria_phage(50.0%) NA NA
DBSCAN-SWA_20 4260125 : 4336905 56 Acidithiobacillus_phage(21.43%) transposase NA
DBSCAN-SWA_21 4406399 : 4576356 106 Acidithiobacillus_phage(16.13%) transposase,tRNA NA
DBSCAN-SWA_22 4585082 : 4642960 44 Acidithiobacillus_phage(30.77%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage