CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP018622	Virgibacillus dokdonensis strain 21D chromosome, complete genome	3 crisprs	RT,csa3,WYL,DEDDh,cas3,DinG	2	5	9	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP018622_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018622_1

485164-485663

Orphan

I-C

Consensus_repeat	Method
GTCGCACCTTATATAGGTGCGTGGATTGAAAT	PILER-CR
GTCGCACCTTATATAGGTGCGTGGATTGAAAT	CRISPRCasFinder
GTCGCACCTTATATAGGTGCGTGGATTGAAAT	CRT

7 spacers

The CRISPR arrays of NZ_CP018622_1

>merge|NZ_CP018622|1|485164-485663|PILER-CR,CRISPRCasFinder,CRT
GTCGCACCTTATATAGGTGCGTGGATTGAAATTAAAATCGCTTTTACATCATCACCTTGACTAAATGTCGCACCTTATATAGGTGCGTGGATTGAAATATAAAAAGATAATATACAGCATGACCAAACGTATCGTCGCACCTTATATAGGTGCGTGGATTGAAATGATCACCATAATAAACTGTTTCAAAATCTCCACTAGTCGCACCTTATATAGGTGCGTGGATTGAAATTATGCAAGCAAAAATTAATACGTTCTTTATTTCACAAGGTCGCACCTTATATAGGTGCGTGGATTGAAATAGTATTATTTTTAAACAATATAGTATTTTGAAAGTCGCACCTTATATAGGTGCGTGGATTGAAATTTCAAACATTTATTAGCAAAGGCTTTTCGTTCCCTGTCGCACCTTATATAGGTGCGTGGATTGAAATACTTTTGGCATTAATATTGGTCTAAGAATTAGCGGTCGCACCTTGTATAGGTGCGACCAATTGGGA

>NZ_CP018622|1|1|485164-485597|PILER-CR
GTCGCACCTTATATAGGTGCGTGGATTGAAAT	TAAAATCGCTTTTACATCATCACCTTGACTAAAT
GTCGCACCTTATATAGGTGCGTGGATTGAAAT	ATAAAAAGATAATATACAGCATGACCAAACGTATC
GTCGCACCTTATATAGGTGCGTGGATTGAAAT	GATCACCATAATAAACTGTTTCAAAATCTCCACTA
GTCGCACCTTATATAGGTGCGTGGATTGAAAT	TATGCAAGCAAAAATTAATACGTTCTTTATTTCACAAG
GTCGCACCTTATATAGGTGCGTGGATTGAAAT	AGTATTATTTTTAAACAATATAGTATTTTGAAA
GTCGCACCTTATATAGGTGCGTGGATTGAAAT	TTCAAACATTTATTAGCAAAGGCTTTTCGTTCCCT
GTCGCACCTTATATAGGTGCGTGGATTGAAAT

>NZ_CP018622|1|1|485164-485663|CRISPRCasFinder
GTCGCACCTTATATAGGTGCGTGGATTGAAAT	TAAAATCGCTTTTACATCATCACCTTGACTAAAT
GTCGCACCTTATATAGGTGCGTGGATTGAAAT	ATAAAAAGATAATATACAGCATGACCAAACGTATC
GTCGCACCTTATATAGGTGCGTGGATTGAAAT	GATCACCATAATAAACTGTTTCAAAATCTCCACTA
GTCGCACCTTATATAGGTGCGTGGATTGAAAT	TATGCAAGCAAAAATTAATACGTTCTTTATTTCACAAG
GTCGCACCTTATATAGGTGCGTGGATTGAAAT	AGTATTATTTTTAAACAATATAGTATTTTGAAA
GTCGCACCTTATATAGGTGCGTGGATTGAAAT	TTCAAACATTTATTAGCAAAGGCTTTTCGTTCCCT
GTCGCACCTTATATAGGTGCGTGGATTGAAAT	ACTTTTGGCATTAATATTGGTCTAAGAATTAGCG
GTCGCACCTTGTATAGGTGCGACCAATTGGGA

>NZ_CP018622|1|1|485164-485663|CRT
GTCGCACCTTATATAGGTGCGTGGATTGAAAT	TAAAATCGCTTTTACATCATCACCTTGACTAAAT
GTCGCACCTTATATAGGTGCGTGGATTGAAAT	ATAAAAAGATAATATACAGCATGACCAAACGTATC
GTCGCACCTTATATAGGTGCGTGGATTGAAAT	GATCACCATAATAAACTGTTTCAAAATCTCCACTA
GTCGCACCTTATATAGGTGCGTGGATTGAAAT	TATGCAAGCAAAAATTAATACGTTCTTTATTTCACAAG
GTCGCACCTTATATAGGTGCGTGGATTGAAAT	AGTATTATTTTTAAACAATATAGTATTTTGAAA
GTCGCACCTTATATAGGTGCGTGGATTGAAAT	TTCAAACATTTATTAGCAAAGGCTTTTCGTTCCCT
GTCGCACCTTATATAGGTGCGTGGATTGAAAT	ACTTTTGGCATTAATATTGGTCTAAGAATTAGCG
GTCGCACCTTGTATAGGTGCGACCAATTGGGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018622.1\|WP_101932540.1\|482749_484627_-\|beta-N-acetylhexosaminidase	unknown	unknown	gnl\|CDD\|119335
NZ_CP018622.1\|WP_101932541.1\|485741_486548_-\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	unknown	unknown	gnl\|CDD\|223692
NZ_CP018622.1\|WP_101932546.1\|490072_491554_-\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|236071
NZ_CP018622.1\|WP_077706018.1\|478320_479178_-\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_CP018622.1\|WP_101934180.1\|488912_490055_-\|thiolase-family-protein	unknown	unknown	gnl\|CDD\|238383
NZ_CP018622.1\|WP_101932543.1\|487374_488184_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|275313
NZ_CP018622.1\|WP_164085293.1\|476348_476621_-\|serine-hydrolase	unknown	unknown	gnl\|CDD\|365903
NZ_CP018622.1\|WP_101932542.1\|486544_487399_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|275314
NZ_CP018622.1\|WP_101932539.1\|479366_480515_-\|DUF1343-domain-containing-protein	unknown	unknown	gnl\|CDD\|377768
NZ_CP018622.1\|WP_101932545.1\|488542_488923_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379194
NZ_CP018622.1\|WP_101934181.1\|493705_494692_-\|PTS-fructose-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|224218
NZ_CP018622.1\|WP_101932547.1\|491585_492140_-\|biotin-transporter-BioY	unknown	unknown	gnl\|CDD\|224187
NZ_CP018622.1\|WP_101932538.1\|476856_477828_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|173926
NZ_CP018622.1\|WP_077706016.1\|476647_476860_-\|serine-hydrolase	unknown	unknown	gnl\|CDD\|365903
NZ_CP018622.1\|WP_101932535.1\|470662_472378_+\|DUF2207-domain-containing-protein	unknown	unknown	gnl\|CDD\|378333
NZ_CP018622.1\|WP_077706019.1\|480606_482199_-\|beta-N-acetylhexosaminidase	unknown	unknown	gnl\|CDD\|366376
NZ_CP018622.1\|WP_164085291.1\|473016_473307_+\|transposase	unknown	unknown	gnl\|CDD\|225511
NZ_CP018622.1\|WP_101932537.1\|473311_474283_-\|IS30-family-transposase	unknown	unknown	gnl\|CDD\|225382
NZ_CP018622.1\|WP_101932548.1\|492503_493682_-\|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl\|CDD\|224090
NZ_CP018622.1\|WP_101932544.1\|488223_488574_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239525

Protein	Function_ID	Function_description	E-value
NZ_CP018622.1\|WP_101932540.1\|482749_484627_-\|beta-N-acetylhexosaminidase	gnl\|CDD\|119335	cd06565, GH20_GcnA-like, Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.	8.0732e-116
NZ_CP018622.1\|WP_101932541.1\|485741_486548_-\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	gnl\|CDD\|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	1.38077e-28
NZ_CP018622.1\|WP_101932546.1\|490072_491554_-\|AMP-binding-protein	gnl\|CDD\|236071	PRK07638, PRK07638, acyl-CoA synthetase; Validated.	3.94308e-123
NZ_CP018622.1\|WP_077706018.1\|478320_479178_-\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	3.57155e-75
NZ_CP018622.1\|WP_101934180.1\|488912_490055_-\|thiolase-family-protein	gnl\|CDD\|238383	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.	1.43478e-172
NZ_CP018622.1\|WP_101932543.1\|487374_488184_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|275313	TIGR04520, ECF_ATPase_1, energy-coupling factor transporter ATPase. Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the upstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate].	3.14614e-111
NZ_CP018622.1\|WP_164085293.1\|476348_476621_-\|serine-hydrolase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	4.67379e-08
NZ_CP018622.1\|WP_101932542.1\|486544_487399_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|275314	TIGR04521, ECF_ATPase_2, energy-coupling factor transporter ATPase. Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the downstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate].	7.26844e-83
NZ_CP018622.1\|WP_101932539.1\|479366_480515_-\|DUF1343-domain-containing-protein	gnl\|CDD\|377768	pfam07075, DUF1343, Protein of unknown function (DUF1343). This family consists of several hypothetical bacterial proteins of around 400 residues in length. The function of this family is unknown.	0
NZ_CP018622.1\|WP_101932545.1\|488542_488923_-\|hypothetical-protein	gnl\|CDD\|379194	pfam13452, MaoC_dehydrat_N, N-terminal half of MaoC dehydratase. It is clear from the structures of bacterial members of MaoC dehydratase, pfam01575, that the full-length functional dehydratase enzyme is made up of two structures that dimerize to form a whole. Divergence of the N- and C- monomers in higher eukaryotes has led to two distinct domains, this one and MaoC_dehydratas. However, in order to function as an enzyme both are required together.	0.000880006
NZ_CP018622.1\|WP_101934181.1\|493705_494692_-\|PTS-fructose-transporter-subunit-IIC	gnl\|CDD\|224218	COG1299, FruA, Phosphotransferase system, fructose-specific IIC component [Carbohydrate transport and metabolism].	3.34203e-74
NZ_CP018622.1\|WP_101932547.1\|491585_492140_-\|biotin-transporter-BioY	gnl\|CDD\|224187	COG1268, BioY, Uncharacterized conserved protein [General function prediction only].	2.96953e-42
NZ_CP018622.1\|WP_101932538.1\|476856_477828_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|173926	cd04301, NAT_SF, N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransferase, Myristoyl-CoA: protein N-myristoyltransferase, and Acyl-homoserinelactone synthase which have a similar catalytic mechanism but differ in types of acyl groups transferred. Leucyl/phenylalanyl-tRNA-protein transferase and FemXAB nonribosomal peptidyltransferases which catalyze similar peptidyltransferase reactions are also included.	1.19599e-10
NZ_CP018622.1\|WP_077706016.1\|476647_476860_-\|serine-hydrolase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	0.000248161
NZ_CP018622.1\|WP_101932535.1\|470662_472378_+\|DUF2207-domain-containing-protein	gnl\|CDD\|378333	pfam09972, DUF2207, Predicted membrane protein (DUF2207). This domain, found in various hypothetical bacterial proteins, has no known function.	2.28919e-47
NZ_CP018622.1\|WP_077706019.1\|480606_482199_-\|beta-N-acetylhexosaminidase	gnl\|CDD\|366376	pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal domain.	4.29022e-102
NZ_CP018622.1\|WP_164085291.1\|473016_473307_+\|transposase	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	9.51714e-08
NZ_CP018622.1\|WP_101932537.1\|473311_474283_-\|IS30-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	8.4314e-56
NZ_CP018622.1\|WP_101932548.1\|492503_493682_-\|pyridoxal-phosphate-dependent-aminotransferase	gnl\|CDD\|224090	COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism].	4.22204e-153
NZ_CP018622.1\|WP_101932544.1\|488223_488574_-\|hypothetical-protein	gnl\|CDD\|239525	cd03441, R_hydratase_like, (R)-hydratase [(R)-specific enoyl-CoA hydratase]. Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. The structure of the monomer includes a five-strand antiparallel beta-sheet wrapped around a central alpha helix, referred to as a hot dog fold. The active site lies within a substrate-binding tunnel formed by the homodimer. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit.	1.52491e-09

>NZ_CP018622.1|WP_101932540.1|482749_484627_-|beta-N-acetylhexosaminidase
MKVQFAGNVSAVYTGLKILSTELGFSIDDTNGFPIDVQQRKGSIYISKNQYSGQICFEKPIHFFRALGLWLEQYQLKQEFELVEEAQFDSSGAMLDASRNAVMRVSEMKAMLRKMAVMGLNVLMIYTEDTYEVEEYPYFGYMRGRYTEDELKACDQYAATLGIEMIPCIQTLAHLTEALKWNYAGEMKDTADILLVGEAKTYAFIEAMITAASKPFQSNRIHIGMDEAHQLGLGKYLERNGYEQRFAIMTKHLQAVVAMTEKLGLKPMLWSDMYFRLGSKTGGYYDLEAEIPDDVVASIPDVQLVYWDYYHTDQAFYQTFIKRHQVLKPNSVFAGGVWTWNGIAPNYGKAIQTTEAALTACKKEGVKEVFATMWGDNGAETPMTTALPMLQLFAEHTYHQVVHAKTWQARFACCVGANYNDFMVLHQFDETPGVSENNLHASNPSKFLLWQDILLGLYDENIKGLSLGKHYEQMIPQLTQAKERNPTFFSLFAFYEQLARVLSTKAELGIHIKQAYDTVHKENMQMYLEQIKVLQEELIELRDTHRDLWFSMNKPFGWEIIEIRYGGVITRLDTVQYRIKKWLADEIVVIEELAEDRLYFDGPYQMPAGSLGRNLYHRIVSASPL
>NZ_CP018622.1|WP_077706019.1|480606_482199_-|beta-N-acetylhexosaminidase
MNKSLVKEVGKLLVIGFPGKEVPDYIRRMMHQYHIGGMILFSRNIGTPEEVLRLTTDLQKEAKKAGYTHPLLICVDQENGVVRRLGEGTTIFPGAMALGATNNPKNAYHIGLATAKELKALGINWNLAPVLDVNNNPDNPVIGVRSFGESAEMVADFGRQMMQGMQDGGVITTLKHFPGHGDTNVDSHLDLPVISHHKERLKKVELLPFQTSIDAGADTVMSAHVYFPAIESKQGVPATLSKKVITELLRTELAFDGVVTTDCLEMRAIANGVGTEQSAVEAIKAGVDLLIISHTANKQQDTIQKIIQLIEANELDRSFITQSIRRIDSLKEKYLHWDDIQLVGEEAVPKVINCKQHEEIAYQMYKESITVVKNENVIPVSLKEKDRVLVLWPNDGGTMGVEDKRHTTHALDEAVKSYHKEVDKIDVTDDMTALDIEEIVAKAHHYDFIFVGTLTITIGSKQVTLVEKLAQAQLSFVVIAMRSPYDLRYIPQVKAYINTYEFTYPALQVAAGAVFGKEKVSGTSPVTIFP
>NZ_CP018622.1|WP_101932539.1|479366_480515_-|DUF1343-domain-containing-protein
MKLGLEVFLETAYKQFKHQKIGLVTNMTGVNQQLIPAIDLFYHHPHIKLTALYAPEHGIRGDAKEGEKVTSTVDPYTGLPVYSLYGTTRKPTKEMLEPVDVIVFDLQDIGSRYYTFIYTMAYVMEACMEEGKHVVVLDRPNPIGGIKMEGNVVEEDVRSFVGLLPIPNRHGMTVGELAVLFKHVFGYYCELTVIHMVGWRRTMYFDQTGLFWVPPSPNTPTLDMSMLYPGTCLVEGTNLSEGRGTTKPFEVIGAPFIDGQILASAFNQRNIPGVLARPTSFTPFYQKYKNQLCGGVQLHIEDRHLLNSVVTGILLLEIVASLYPDAFSFITNENNKYFFDLLAGTKSLRQFILEEKAKVFVNACEDELESFRQVREPYLLYQ
>NZ_CP018622.1|WP_077706018.1|478320_479178_-|MurR/RpiR-family-transcriptional-regulator
MTNGGLIILTEMLEKLPPSEKKIAAYILDHPQESISLTANELGKRSSTSGAAVIRLCKSLHLKGFQDLKLRIAGDLQKPDDHVGYQDIQPNESASSIIKKMTDNSIQTIRETADLLNTEELQKAVDALREARQIHFIGVGASSIAAEDAQHKFLRIDKTVYAFKDMHMAATLVANTSADDVVVGISFSGETQEITKILQLANENQATTISLTKYGSSNVGDQAKINLYTSATNEPTFRSGATSSRVAQLQVIDILFMCVASLQYEDSVKHLGATRDAVDFLKWQW
>NZ_CP018622.1|WP_101932538.1|476856_477828_-|GNAT-family-N-acetyltransferase
MKTVAWDETYVEKLINLWNRELGLAFPMRDSLFKQNSVQDKNVCRDSSWIVLNNDNDVIGFIIVKVWQEKIQVQMSKTTGWIQVLLVDHRYRNKGIGTKLLEHAEEVLHKQGIQQILLGRDPWHYFPGIPIHNEQTKQWFLATEYKAYGTEHDLLKTYNKTTTVTKPDFPEIDFSVLHTREKKNFLAFLHRCFPGRWEYEAIKYFEFGGTGREFVVMRKRGRLIGFCRINDPNSPIIAQNVYWAPLFETALGGVGPLGIDALERGQGYGLAVVEAGIAELRNRGIQKIVIDWTGLVDFYKKLGYEVWKSYTSFKKLLESGGDS
>NZ_CP018622.1|WP_077706016.1|476647_476860_-|serine-hydrolase
MRQVVLDVLQKEMDLKHIPAVVIQVSYQNEVVLKEAIGNRVVYPTQAPLQLNTMFDLTSLTKVVATLPPF
>NZ_CP018622.1|WP_164085293.1|476348_476621_-|serine-hydrolase
MDDLVSFFHPLFAQNGKESIRLGHVLAHTSGLAAHRHFYKEGLGGEEVLEQICKEKMTYTLNKEVLYSDLNSMILYNLVEEKLWNILNPL
>NZ_CP018622.1|WP_101932537.1|473311_474283_-|IS30-family-transposase
MSYTHLTKTELVFIEEYHEFGLSGRKIANKLKRGHEAVYRVIRQLKEGLTAIDVYLQYKANKATCGRKKIQLTPNEKAYIHEKVRDGWTPDVIIGRNEKTISCSMRTLYRKFSSGEFNQNDLPMQGKRKPNGHQERRGKQKFRRTILDRDHDHPNYKKEFGHLEGDTIVGRHHKSAVITLVERLTKCIIAIKPAGRQATNIETSLNQWFERLPKHLFKSIIFDCGKEFSNWKSISNEQDVDIYFADPGTPSQRGLNEHSNGLLRKNGLPKEMDFNPVSQEYISEVALRRNNIPRKSLKYKTPMECFIDYVGQDFDKSMLSRLI
>NZ_CP018622.1|WP_164085291.1|473016_473307_+|transposase
MAKFTNVEKIQAVIRYQSGAEGVKSMAKSIGVDHSVLLNWIKQYEYHGEKAFEKCYTSYTLQYKLDVLNYMNEQGTSIRETAAIFNISTHSTLLQF
>NZ_CP018622.1|WP_101932535.1|470662_472378_+|DUF2207-domain-containing-protein
MLKKLGLVFGIILFLCLIPSTVFAVDFSINQSRVDAYLQKDGDVHVNEQHTYQFDGEFNGMTRTLIPSKDASIHNVTATEAEKDLKVKQEENVYKIYRSGKDETVTIQLSYTIKNSLQAYSDLVVFSWSFFDSENETDYEHFDAFIHPPEKTENSVAYGEDEAFKTEKQKEDGTIHFAMGYVDSYENGAITVSYDRSLFPGVSIMEEKLIREEMLATKQALLDKEQAFLNRKSTLKEISPYVISIFSLLSLFLLFVAWRKKQVQELELARLSESVHFLPKQEMSLPATVAYMKHGKVGSTVMTAALLDLERKGFIQRDNDDLHKFTVIHEQTDHQHEKILIDLLFYTVGNNGVFCTNDLKEFMENKANQDMYQKELYRYNYTVTKEIKEHHLVDKKTGTRIMAGVLSFLINPFSIVFAMHELYASMTITSFLFVFLALFAILYRPRTLKGARIYKQWKEFEEKTLQPESTSLENLTDDEQKRGLIYGVGVNHTPLHTKWTTSNKQLLHHSTSAEASSDDHTDVMMLVLATAAINTQFHDAQTAVTADTTSASIGAGSGAGAGGSGGGSGAF
>NZ_CP018622.1|WP_101932541.1|485741_486548_-|energy-coupling-factor-transporter-transmembrane-protein-EcfT
MMDSVILGQYVKRDSIIHYLDPRSKILSLIIIMLSFITLESTMSYMIAIFFVLFILILTNVPFKVYVLAIKPLFFILIVTFLYHMLLTKGSHVILDVYFLTISVEGIVEGIRITLRIMLFILLASVLTFTTKPLTLAHGLEALMKPLAKLNFPVEKFALMIIIAIRFIPTILQELQQILTALKAKGNHMETLSLRKKLLTYNRILIPLLTSLVIRAEQLSMAIEARGFGDGKNRVRYHSLSYQLLDYQVLIVALSFSFFLLYIKVYGI
>NZ_CP018622.1|WP_101932542.1|486544_487399_-|ATP-binding-cassette-domain-containing-protein
MGYQFKNVGVQLNQRAILQNIHCVLGEGKWISVIGQTGAGKSTFIQALKGLVPLDYGEYFINGQPAPKDKHGKAKVVSHIGFVFQYPEHQLFETTVYRELSFELKQMNMSKKRIEMTIIHTLSQLGLSKEILPLATFQLSGGQKRLVALASVLVANPKTLILDEPTAGLDPYMRKHLLNYLKSWQQEDNRTVIIVSHQMEDVAEYSDEALILGDGKLIGHFETETLFLEKSLLLEKAGLILPKTIQLLQIIRQLSGESVLVDGCKEADIFQATIPILHKRGLHQ
>NZ_CP018622.1|WP_101932543.1|487374_488184_-|ATP-binding-cassette-domain-containing-protein
MLIFDQVHFHYKKDQPVVKNINFVIQKGEFISIVGKNGCGKSTIAKLMNGLLLPKDGEIFFDNLVTTNPVERTIIQKQMGYIFQNPEDQFITTSVMDEVIFGLENIGISKEEMEIRLKESLLLVDMEKYAHEQPHSLSGGQKQRVAIAAILAMRPKLIIFDEATSMLDPQGRQQMMSLIHKIHKQGVTIVHITHHMDEAIEAERILLIHEGVIEYDGPSLQLFETFSVEKYSLRLPFAIRFQQKLNANTKITKDWKGMIYSKWGTNSKM
>NZ_CP018622.1|WP_101932544.1|488223_488574_-|hypothetical-protein
MFQLKLKVTSKEVKAYAAVSKDQSRIHLEEEEAKILGFKQPVIHGMYIMGRVQSAYIIKYPSKWLVDYYMKFYRPIYVDTVIDIEFSERKQFIQTVVLLEDGSIAAKGYLVTEDLR
>NZ_CP018622.1|WP_101932545.1|488542_488923_-|hypothetical-protein
MRYRQQIKLTNAWIKRYAQSIGAPLQQKNNAFIAPSTMPTIFWQCFPNPPLHNCVVIHGSQQFIYSKPLVSGMVLDCELTLVKRKKLDTYTFFVFELTCKYNNCICVVSTITLKQVGVSTEVKSNK
>NZ_CP018622.1|WP_101934180.1|488912_490055_-|thiolase-family-protein
MAKRTPIGKKGGILRSFEPEKLVSPLIKQIVKETNINSHDIDDVIIGNVVGPGGNIARLSALEAELPVTVPGVTIDRQCGSGLEAIHLAARLIQSGAGDIYLAGGVESTSRAPWKMFKPNSLMEEPEIYSRAPFTPKSYGDPEMGIAAEHVAQKYGITREEQDYFALQSHHKAVHSQKTNRFKSEIVPMSVGNKQLDKDECPRNNSSLEELLKRLPPVFSRDGSVTAGNSCPINDGAAIALLMSYEKAKALGVKPLLRFIDAKASGVDPNLLGIGPIPAVQQLLKRQHLRIDDIDLVEFNEAFAAQALACIKKLKIDMQKVNIGGGALAIGHPYGASGAILITRLCAEMQINPFNKGIATLGIGGGIGLAVLVEGVNYAI
>NZ_CP018622.1|WP_101932546.1|490072_491554_-|AMP-binding-protein
MHLIEAIIGHAKCLPNEIALYDGEREITYCKLVQRMKKVAGALQNRGYHSGDKIGIISKNRFAFVEIFLGAVYAGCIPVVLDPKWGKQQTLLVIEKYQPIVIFEFDALFNVVSSSNTYPKVFSFSNNSLINYEDWVEKHSETVEMKKGNELLFIGFTSGTTGIPKGYLRSHKSWINSFLTTLKSFQLNNMKHVIAPGSFAQSLSLFSLLQSLYFGGTFHIMKAFSMKDFQRHCHFGSELVLFVVPTMVNAMLHNKEYDKANIQAIIVSGDKLSEEMKRQLKQSFPYTKIYEFYGSSEASYISYLNIYEEDRPNSVGRPFPGVVVTIRDEHFEKVSVGRTGQLCVRSELMFTGYYQSETTSAIFREGWLVTGDNAYMDEEGYLYIVGRQKNRIISGGMNIYPEQVETVLKKIANIDEVMVTGVADKYWGERVVAIIKWQNQRLLLDETIKKHCLNHLPSYMVPKQYIAVDKFIYTSSGKIARQKMNEMMKGEIV
>NZ_CP018622.1|WP_101932547.1|491585_492140_-|biotin-transporter-BioY
MSIKEIVYAALFAAIVGVLGMIPAIPLGFIPVPITAQTLGVMLAGCFLGKKTGLLSMALFIILVALGLPILSGGRGGVAVFAGPSAGYILSWPIAAFLIGYAVEKVWSKASIWKISIINTIFGVLLVSLIGAPVMAIMTNTSIWIGLIGAISFFPGDILKAIIAAFIAYQLKPISLIEEKHQNS
>NZ_CP018622.1|WP_101932548.1|492503_493682_-|pyridoxal-phosphate-dependent-aminotransferase
MKKQFDRIIKRRGTYCTQWDYTVDRFGEKDILPFSISDMDFQSPFEIRKRLTDWTEHGIFGYTRWNNDDYKNAILTWYKKRHNTSIHSEWIVYSPSVIYSISQLIALLTDKGDAIVMQTPAYDAFFKTIALSNRRLLKNSLIYKNGYYVINWIDLEEKLAKSKAKLLLLCNPHNPTGRVWRKEELIKIVALCNYYGVKIISDDIHMDIIYGKNKYIPIVNVASELDNVFICTSSSKTFNTPSLGGSYIIIPDHKVRDKYLSLMKNRDGVGSASVFGMIALMEGYNHAAYWVDSLREYLYENMEIVYDFIKKEIPSLQFTIPQSTYLAWIDASQLNMSSTVVQEYLVQVGKVGIMSGDVYGAKGNFLRMNVGCPKEKLYNGLDRLKISVNRLL
>NZ_CP018622.1|WP_101934181.1|493705_494692_-|PTS-fructose-transporter-subunit-IIC
MTGVSYMIPIVVAGGILLSLGVIIGEETAIGEQLVNYGVWTLGLMVPMIAGYISYSIADRPGIAVGLASGVFASELGTGYIGGILVGFFAGWITNQLKRIPMHHHIAMIKPIMVIPLLGIGASALFMYILSIPLTPAMEGLEKWLVSLEGSNLLFLGFVIAAMMAFDMGGPVNKIALAFAYATLTEGIYAPMAACWIGIMAAPLGLGLATVIFPKKFSKSEKGNSVPAIIMGSLGITEGAIPYAVATPLKVIPVITIASGIGGGIALVLGAKAPIPAAIGIWGLPFVQKPIMLLIGLIIAISIIALLVGLIRKESDVNEEEAGQVLFE

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Crispr_ID: NZ_CP018622_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018622_2

528348-528585

Orphan

I-C

Consensus_repeat	Method
ATGTCGCACCTTGTATAGGTGCGTGGATTGAAAT	CRISPRCasFinder
GTCGCACCTTGTATAGGTGCGTGGATTGAAATAGC	CRT

3 spacers

The CRISPR arrays of NZ_CP018622_2

>merge|NZ_CP018622|2|528348-528585|CRISPRCasFinder,CRT
CAGTCGCACCTTGTATAGGTGCGTGGATTGAAATAGCAGGCTATAAATCTATCATGCATATACACGATGTCGCACCTTGTATAGGTGCGTGGATTGAAATAGCATCACTTGTAGGACTATTCGATGTGGAAGAATGTCGCACCTTGTATAGGTGCGTGGATTGAAATTCTTTGGGATCAAACAACTTTGTCAATTTTACAAAGGTCGCACCTTATATAGGTGCGATGGAAATTACAGC

>NZ_CP018622|2|2|528348-528582|CRISPRCasFinder
CAGTCGCACCTTGTATAGGTGCGTGGATTGAAAT	AGCAGGCTATAAATCTATCATGCATATACACG
ATGTCGCACCTTGTATAGGTGCGTGGATTGAAAT	AGCATCACTTGTAGGACTATTCGATGTGGAAGA
ATGTCGCACCTTGTATAGGTGCGTGGATTGAAAT	TCTTTGGGATCAAACAACTTTGTCAATTTTACAA
AGGTCGCACCTTATATAGGTGCGATGGAAATTAC

>NZ_CP018622|2|2|528350-528585|CRT
GTCGCACCTTGTATAGGTGCGTGGATTGAAATAGC	AGGCTATAAATCTATCATGCATATACACGAT
GTCGCACCTTGTATAGGTGCGTGGATTGAAATAGC	ATCACTTGTAGGACTATTCGATGTGGAAGAAT
GTCGCACCTTGTATAGGTGCGTGGATTGAAATTCT	TTGGGATCAAACAACTTTGTCAATTTTACAAAG
GTCGCACCTTATATAGGTGCGATGGAAATTACAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018622.1\|WP_073006584.1\|527256_527496_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP018622.1\|WP_101932584.1\|536260_538108_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018622.1\|WP_101932576.1\|529079_529520_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018622.1\|WP_101932580.1\|534135_534672_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018622.1\|WP_073006563.1\|538109_538448_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018622.1\|WP_101932575.1\|525355_525805_-\|tripartite-tricarboxylate-transporter-TctB-family-protein	unknown	unknown	gnl\|CDD\|377815
NZ_CP018622.1\|WP_164085306.1\|522936_523230_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018622.1\|WP_101932578.1\|531275_532016_-\|response-regulator	unknown	unknown	gnl\|CDD\|226931
NZ_CP018622.1\|WP_101932571.1\|520769_522074_-\|SidA/IucD/PvdA-family-monooxygenase	unknown	unknown	gnl\|CDD\|226017
NZ_CP018622.1\|WP_101934182.1\|525832_526795_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|225722
NZ_CP018622.1\|WP_073006582.1\|527649_527994_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP018622.1\|WP_101932579.1\|531981_533658_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225827
NZ_CP018622.1\|WP_101932570.1\|519495_520779_-\|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|181234
NZ_CP018622.1\|WP_101932577.1\|529750_531085_-\|citrate-transporter	unknown	unknown	gnl\|CDD\|225407
NZ_CP018622.1\|WP_101932572.1\|522054_522729_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197666
NZ_CP018622.1\|WP_164085304.1\|518325_519489_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223737
NZ_CP018622.1\|WP_101932583.1\|535653_536271_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018622.1\|WP_101932574.1\|523862_525344_-\|transporter	unknown	unknown	gnl\|CDD\|225870
NZ_CP018622.1\|WP_101932582.1\|535030_535387_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018622.1\|WP_101932581.1\|534723_535044_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP018622.1\|WP_073006584.1\|527256_527496_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	8.85074e-11
NZ_CP018622.1\|WP_101932575.1\|525355_525805_-\|tripartite-tricarboxylate-transporter-TctB-family-protein	gnl\|CDD\|377815	pfam07331, TctB, Tripartite tricarboxylate transporter TctB family. This family consists of several hypothetical bacterial proteins of around 150 residues in length. This family was formerly known as DUF1468.	8.09479e-08
NZ_CP018622.1\|WP_101932578.1\|531275_532016_-\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	2.06732e-76
NZ_CP018622.1\|WP_101932571.1\|520769_522074_-\|SidA/IucD/PvdA-family-monooxygenase	gnl\|CDD\|226017	COG3486, IucD, Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism].	2.84075e-96
NZ_CP018622.1\|WP_101934182.1\|525832_526795_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl\|CDD\|225722	COG3181, COG3181, Uncharacterized protein conserved in bacteria [Function unknown].	1.09605e-84
NZ_CP018622.1\|WP_073006582.1\|527649_527994_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	8.88991e-17
NZ_CP018622.1\|WP_101932579.1\|531981_533658_-\|sensor-histidine-kinase	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	3.57106e-169
NZ_CP018622.1\|WP_101932570.1\|519495_520779_-\|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|181234	PRK08117, PRK08117, aspartate aminotransferase family protein.	0
NZ_CP018622.1\|WP_101932577.1\|529750_531085_-\|citrate-transporter	gnl\|CDD\|225407	COG2851, CitM, H+/citrate symporter [Energy production and conversion].	8.01421e-166
NZ_CP018622.1\|WP_101932572.1\|522054_522729_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197666	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein.	4.13643e-26
NZ_CP018622.1\|WP_164085304.1\|518325_519489_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	3.65398e-56
NZ_CP018622.1\|WP_101932574.1\|523862_525344_-\|transporter	gnl\|CDD\|225870	COG3333, COG3333, Uncharacterized protein conserved in bacteria [Function unknown].	0

>NZ_CP018622.1|WP_073006582.1|527649_527994_+|helix-turn-helix-transcriptional-regulator
MKKNSPVFGNRLKFLRKQRDLKQEDVAKSLGISRARYSHYENNHVEPDIEMLKNLSQFYNVSIDYLVGNSIKNKNKDEVLNIDPELELWYKELPSNGEEDMRRLKKIWDVFKEE
>NZ_CP018622.1|WP_073006584.1|527256_527496_-|helix-turn-helix-transcriptional-regulator
MERKALTQLRKKHQLTQQELAKELGISTIYVRKIEKGDADPGRDTMVKYELFFNEDIKKLFPDIFYAIDKEKQNDKEVI
>NZ_CP018622.1|WP_101934182.1|525832_526795_-|tripartite-tricarboxylate-transporter-substrate-binding-protein
MVTLIACSNSNKADSGEWSPKEPIEIVAPAGAGGGWDTTARMAAKIFEEEGMVEQDIGVVNKPGGGGAVGWAYVAEKAGNPHHMFIASRPLIDVPLNGQSQYDHNDFTPIANVIADYGAFAVTADSKWENLNDLFEDMKKDPSSVTIIGASSPGSMDHIQFVKIAKEAGVDIKKIKYVSEQDGGTLTALLNGSADVYSTGVAETIEQAKAGKIKVLGVTSEERLEGEVISEFPTVQEQGIDSNFVNWRGFFAPPDTDESAIDYYVSKFKELNESEAWKEIRKQYGWDEMFMYGEEYKDFLDEQKEESEQLLDELGISKNE
>NZ_CP018622.1|WP_101932575.1|525355_525805_-|tripartite-tricarboxylate-transporter-TctB-family-protein
MLKTLNRKIAVLLWCIAILYLFFAYRLPSYAYVPIDSNALPIILGILLLVLSTILFFGKGDSENDKLNINKTDLLKLLGVFLLNVLYASFLESLGFVIVSIFFIFFCSYLLGYRKHVINAVTAILVPLTFYLLFTSALQIRLPQGVMPF
>NZ_CP018622.1|WP_101932574.1|523862_525344_-|transporter
MGGLEGVLSGFQVAFSVEGIIFVFIGVLAGTFIGMLPGLGPISAIAVMIPISYGFDPTIALVMMAGVYYGAVFGGSTSSILLNAPGISGTVATAFDGHPLAKQGKAGKALAIAAISSFIGGTVGIVLLMLFAPMLASVAIAFGPPEYFALMLVALTAIASLSEGSLVKAFISGVIGFMFATVGIDAQTGTPRFTFGMTNLLSGIEFLVIALGLFALAEICFLIINSVKEKNDIHHNIGSLKLTKSDFKEMKGPATRQSFLGFIIGVLPGAGATIASFIGYIVEKKLSKKPEQFGKGSIKGLTAPETANNAATSGAFVPLLSLGIPGSGTTAVLLGALLVLGVQPGPLLFEDEPTLFWGVIASMYIGNVFLLILNLPLIPYIAKLLLIPRPLLISLVITFCMLGVYAISFNTFDIYLLLLFGVIGFLMRLARFPAPPFILSFILGGMMEQSLRQSLTISEGNIGIFLESPIAIALFIVALLSIVIPAFKKKTIT
>NZ_CP018622.1|WP_164085306.1|522936_523230_+|hypothetical-protein
MMNTKHYRIKLNGEFNFSMIDEVFEVIKLPFISINWVNKYQLEGEENLFFVRIELQCKADKRIKYIEESLLGIGNNYASDISMEEVTKKNMYICFKG
>NZ_CP018622.1|WP_101932572.1|522054_522729_-|helix-turn-helix-transcriptional-regulator
MGVKRILLYDAKKTLDDREVFLLKKFKVVLIRNLKTLKKKNLERYRMLIIIEGNNLISDESMLIEEFENLHIPLIRVNTVPKDDIFELIFNIINVQIDFNELTHVNNEKLIEALLYIENNLQNSNLNLKSVANHLFLNTAYFSRFFRESMGIGFKDYLIKLRIAKAKDMLENGQLVTDVCMTVGYTNLSYFSQIFKKQVGLSPSIYRKYYQLIIKEEKNVQKIL
>NZ_CP018622.1|WP_101932571.1|520769_522074_-|SidA/IucD/PvdA-family-monooxygenase
MYRKFYDVVGVGFGPAGIALETAIRDMEDINNKSVYKRVFLEKNNDSAWMPEMLLPGTDIQHHFLRDFATPRNPRSQYTFANYLYEKGRLFSFGLLGRPSRTEWSDYVQWVSKQIDDKAHYNEEVKSVKPIVINDDIEGLEVHTVNNVSKEHNVFHTTNLILNSGRKPFIPSQFKDKVSDKVFHASKFRSSVQNINIEDNPTFTVIGSGQNSVEIILYLANKFPNSKINSIVRHTGFRLYELGHFTNEVFFPEFTNYFYSLNQNERDKLFEQIKHTNYSAVDDDVSEALYWKMYEDKIRGTEQIELHRCKEIVDVANTQKDYLLNIKDIYNKQEASINTDYIILCTGFFEEGFPEVLQPMKKYFNYNKNNSLKVSENYKVDTKSNVKANIYLNGLTEKTHGIGDAASFTMMATKAQRILDSMNNITSMKDGVLS
>NZ_CP018622.1|WP_101932570.1|519495_520779_-|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme
MVLKVKQHSDKVSRVWPLFTNIDVDYGEGVHIYDQSGREFIDCTSGIGVTNTGHCHPRVVKAVKEQTEKLLHGQTTILYNSMLDRLTNDLQKIIPEKLNCFFFSNSGSEAVEGAIKLARHATRKPNIICFQGGYHGRSIGALSLTTAKSVYRSGYQPLMSGVFVSPHPYFRQYREEDVEERTRHCLAELEYLLHTQTSPDETAAMIIEPILGEGGYVMPPESFINGIRDICNKNNILLIFDEIQTGFGRTGEYFAFTHFNIVPDILVIAKGIASGLPLSGIAANKEIMDKWIPGSHGGTYGPNPISMAAAIETINVLEDEELVNNAKEMGDFLLAELQALKKEYPIIVDVRGKGLMIGCEFVDDNGNPGTVIAEKVRQNCLTRGLILLTCGPYNQVIRWIPPLTIKKTELEKALTIFTLAIKDSLGR
>NZ_CP018622.1|WP_164085304.1|518325_519489_-|FAD-binding-oxidoreductase
MNYDVIIVGGGVIGASIAYFLTKSKKFNVLLCEKGKPPGDGATSISGGLLRVHHTNNANQYLSFRSLQLYKELTASKQMDFGYHPIGFSLMVGPQYVENFKINVQNMVNLGLPIKVYSPNEYSLEERFINVENIGAVSYEPLGGYGNPAKTSLAFIHESLKQGLHLMEGTEVQDIVVNKNKVVGVQTNLSPIFAKHVIIASNYWGGKLTKNIGIDLPIYTKRLGVVFAHTDTDKVLSHSYIDDTSDTYMRPFPDGRILIGIKSSECDISDIHFKRKIQNEEALEAIDRASKRFPILQKAKVLGGRIGFDSYTPDQYPLIGPTEYEGLYLSVGFGGGGYKIAPAVGEAIAKEILYNTKTNELKYYRINRFEKEKKYTYFQTKSMYKYM
>NZ_CP018622.1|WP_101932576.1|529079_529520_+|hypothetical-protein
MKKYANLILILISFMLFGCNTSNSEEAEQVPTSGEIIVHSNKYEMIPGNYVSKGEPEIHSVDTPSVLELSKEFETLTVNNNSSIEIIIKENPSLTVFEWNEDVETKEVAFKDNKINVPEKEGVYIYEVKAKWENGEASFIFDVEVK
>NZ_CP018622.1|WP_101932577.1|529750_531085_-|citrate-transporter
MGVLSIIGFLTIIIIVLLLIRGRVAPIIALVLTPIIAAVIAGFGLEDIGTFFNDGIADVVHVAIMFIFAILFFGIMQDVGLFDPLIRGMITISQGNVIAISVGSVFIAAIAQLDGSGASTFLITIPALLPLYKKLKMNPYLLLLLIAGSASIMNMLPWAGPLGRSASVLNMDVTELWRPLIPVQAIGLVLMIALAIVLGYREKRRITKEYGSVEAAAVMEPDVTSVDATSESINKASETVAWKFWLNVLLAIAVVGTLVWGIIPAGLVFMIGVSLALPLNYPNMEDQMDRIRSHAPNALMMATIILAAGTFLGILTGTGMLNAIAEDVVKVIPAFIAPYIHLIIGFFGVPFDLLLSTDAYYFALMPVVEQIATGFGIDSLSTGYAMIVGNIVGTFISPFSPAVWLALGLAGLEMGRHIRYSLFWLWGLSIVLLASTVAIGLITV
>NZ_CP018622.1|WP_101932578.1|531275_532016_-|response-regulator
MEKQGIQVLIIEDDFRVAAINQQFVEQVEGYQVVKSVKTAEEAYHYLRQPGAEIDLVLLDIYIPDVEGLELFWQLRTHCKRVDIVVISAAIEKNVIEEVLRGGVIDYIIKPVDAERFIKMLKQYQQRRRYLMSKEVLEQHEIDGLIERQIGGFSPTKKAHGQLPKGIDPITLDEVTNLFQTQKVKGITAMELSEQIGTSRSTARRYLEYLVSLKKIKTTLLYGNVGRPERRYILCETYEQNATNNS
>NZ_CP018622.1|WP_101932579.1|531981_533658_-|sensor-histidine-kinase
MFILHREKDSIANKRYFSLKVKMIMLISILLIGMFVIFGLFLRSFIATTMEDQIAKRALSVSKSVANMPSVRDAFELERPETVMQNIVGPLQQNIGAEFIVIGNKEGIRYAHPDPKKIGKPMVGGDNSRALEEGQSYISKREGSLGLSIRGKTPIRDKRGEIIGVVSVGFLNEEVQHIIEEQSRSVWLMLFGILFIGVIGAILIATYLKKLLSGMEPEEITQLLLQKEAILQSTHEGIIAVDNQGKMMMMNVAAQTILFEREIDRRSYVGKSVDEFLPHTGLFDVLKTGEKHFNKEMILGDVIVLTNRMPIFHQHTIIGAVTTFRKKTELESITKELSQMKQYANAQRAQTHEFSNKLHTILGLLQLDKQEEAIAYIKQENKTQGTLSRFLLQQVADPMVQGLLQGKWDQASELGITMTIDPDSQLSTSFVGEKQRAFLTAVGNLLENAIESVKKEAKSNRNMTVLFTDIGEDVIVEVDDSGSGLSHQDIDPIFEQGYTTKDGAHRGVGLALSKHLVERVGGEILVEEGELGGARFIIIMPKGEGERHGETGDTGTNY
>NZ_CP018622.1|WP_101932580.1|534135_534672_+|hypothetical-protein
MASEKTKKPSEMNPEDLPDVRAFQDEFTRRFLQSTEETKPGYYPFLSGTGKYEMDFPEGGIIDKRAYSLEEKRFEAIAISDKENSSLIKVTHYSFIDSPSSAMDTLEKRLNMELNFAKKEMKSHDIYTAPFQYDEGTYGYVASLISKEKKGEIQIVYSAECNKNKTHCIKTKKRNKKE
>NZ_CP018622.1|WP_101932581.1|534723_535044_+|hypothetical-protein
MMTKKLATSKEFKLRLIDLQYRNLPKEEMIQQIRHIYLEEHGEKLDAKVDVFNSYQSSHEFINISGYYGTAIHFNSEKSNVNAVYIVSQGSKDTLDWEYNVKNVCW
>NZ_CP018622.1|WP_101932582.1|535030_535387_+|hypothetical-protein
MFAGKDGSQAIATNKFVNEAKKEFGVADTIPTTGLSHSLAHNNNTTAHLVFDIFDEVYSVNGAQTNYYQLYFTDIGFANAVRSHFSLSLSEKDHSAIYNIDPNQLRQFAENHYKDKRK
>NZ_CP018622.1|WP_101932583.1|535653_536271_+|hypothetical-protein
MASEKTKKPSEMNPEDLPDVRAFQDEFTRGFLQSTEETKPGYYPFLSGTGKYEMDFPEGGMISERAYARKEKVHEGYSVHILSDVVGGADTTIFYYSNDTTDELDMNLESFSSRIGKDINYKEIAGDGQSLYYGNFERNGFHTYAGYVQNETADGALEIVYQIDCRQELKEKCNKNKTKNEKYVLDWLKTIRFIDENKEVNGDES
>NZ_CP018622.1|WP_101932584.1|536260_538108_+|hypothetical-protein
MSHRIMHSPEMRLRLTQLGYDDKLSKEGFTEKVKRIYLEETGKKLHADVKVYTSKEARTSKQSGYDGLAIYLDAKENKKDELYIISQGTKNLKDWDYNIKAMFAGKEYDQAKSTNEFVKAAQNHFKLDKNEGSTPIIGLSHSLAHNNNTTAYLLYDTFDEVYSVNGAQTNYYQLYNANNEFREAIRNTFKISPGDTNAIYDIDPNQLRQFAENHYKDKAKNIHQIISKDDPLYAASAVRGFFTLGNVEMVDTKPNYPGLRSLVEDIPDEVIQDFQELAIQYTTASNQGGINGVMQEIFGVNMNIVNKIGDNSLKTYMTNQTEIDGMIRQLDKKVPGLLQQVKTITSNADLIFGRLEDAGYISNAQRQLIVEEITNIETELEGIQETLSSIVDVRGTGNFITQIGGDIAAALKIKGHINAIKDSLKVLNQEDLLKVLDELKASHSIMEVLNGLSHGKKSYLGTDMLFTTNHGNKEIKVNISAALRMYQEGKTVLEEKLSKIRQFQAAIDREIPKSYDRNKYKVMRKIDDIEANPSVYTHILRKHLYFSRLDKKVRRIQVHDVFFPLEHKNLDEEIYELKQSVQESYTYIENYRKAIEDLFTEEKEIATLFRLVEGE
>NZ_CP018622.1|WP_073006563.1|538109_538448_+|hypothetical-protein
MKDIESITVTEKIVASENLMHKKQILRKYTEEIFKIDKTFFNLMDDIIVNEDQKGEIVEAMKEETKKLTTYNRNLLEHIDKRMNKIVQRLDEQVDEIKSQRMTITYENTPSA

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Crispr_ID: NZ_CP018622_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018622_3

1625398-1625757

Orphan

Consensus_repeat	Method
CGGNGAGAAANNCGCTCATGTACG	CRT

8 spacers

The CRISPR arrays of NZ_CP018622_3

>merge|NZ_CP018622|3|1625398-1625757|CRT
CGGGTAGAAATCCGCTCATGTACGTGTAAAAAGCGCTCGTCCCGGCGAGAAATCCGCTCATGTACGCGAAACCCGCGCTCGTCTCGGTGAGAAATCCGCTCATGTACGCGAAACCCGCGCTCGTCCCGGAGAGAAACTCGCTCATGTGCGCGAAAACAGCGCTCGTCCCGGCGAGAAATCCGCTCATGTACGCGAAACCCGCGCTCGTCCCGGAGAGAAACTCGCTCATGTACGCGAAACCCGCGCTCGTCCCGGAGAGAAACTCGCTCATGTACGTGTAAAAAGCGCTCGACTCGGCGAGAAATCCGCTCATGTGCGCGAAACCCGCGCTCGTCCCGGAGAGAAACTCGCTCATGTACG

>NZ_CP018622|3|3|1625398-1625757|CRT
CGGGTAGAAATCCGCTCATGTACG	TGTAAAAAGCGCTCGTCC
CGGCGAGAAATCCGCTCATGTACG	CGAAACCCGCGCTCGTCT
CGGTGAGAAATCCGCTCATGTACG	CGAAACCCGCGCTCGTCC
CGGAGAGAAACTCGCTCATGTGCG	CGAAAACAGCGCTCGTCC
CGGCGAGAAATCCGCTCATGTACG	CGAAACCCGCGCTCGTCC
CGGAGAGAAACTCGCTCATGTACG	CGAAACCCGCGCTCGTCC
CGGAGAGAAACTCGCTCATGTACG	TGTAAAAAGCGCTCGACT
CGGCGAGAAATCCGCTCATGTGCG	CGAAACCCGCGCTCGTCC
CGGAGAGAAACTCGCTCATGTACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018622.1\|WP_101933138.1\|1628691_1629600_-\|homoserine-O-succinyltransferase	unknown	unknown	gnl\|CDD\|335664
NZ_CP018622.1\|WP_073010391.1\|1629921_1630608_-\|CDP-diacylglycerol--serine-O-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|224104
NZ_CP018622.1\|WP_164085395.1\|1631075_1631861_+\|phosphatidylserine-decarboxylase	unknown	unknown	gnl\|CDD\|179544
NZ_CP018622.1\|WP_101934232.1\|1628258_1628519_+\|spore-coat-protein	unknown	unknown	gnl\|CDD\|182066
NZ_CP018622.1\|WP_073010376.1\|1637317_1637821_-\|DUF4188-domain-containing-protein	unknown	unknown	gnl\|CDD\|316352
NZ_CP018622.1\|WP_077702018.1\|1609365_1610538_+\|sulfate-adenylyltransferase	unknown	unknown	gnl\|CDD\|235227
NZ_CP018622.1\|WP_101933128.1\|1610556_1612335_+\|SLC13-family-permease	unknown	unknown	gnl\|CDD\|238535
NZ_CP018622.1\|WP_077701993.1\|1631863_1632448_-\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP018622.1\|WP_101933127.1\|1608390_1609203_+\|uroporphyrinogen-III-synthase	unknown	unknown	gnl\|CDD\|235647
NZ_CP018622.1\|WP_101933135.1\|1623817_1625347_+\|D-alanyl-D-alanine-carboxypeptidase/D-alanyl-D-alanine-endopeptidase	unknown	unknown	gnl\|CDD\|334815
NZ_CP018622.1\|WP_101933132.1\|1614777_1615644_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|235853
NZ_CP018622.1\|WP_101933130.1\|1613178_1613448_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|319924
NZ_CP018622.1\|WP_101933141.1\|1634465_1635734_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197775
NZ_CP018622.1\|WP_101933140.1\|1632777_1633764_-\|GMP-reductase	unknown	unknown	gnl\|CDD\|235479
NZ_CP018622.1\|WP_164085399.1\|1635749_1635890_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018622.1\|WP_101933134.1\|1623024_1623384_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131113
NZ_CP018622.1\|WP_101933129.1\|1612345_1612951_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP018622.1\|WP_164085393.1\|1617311_1622756_+\|LPXTG-cell-wall-anchor-domain-containing-protein	unknown	unknown	gnl\|CDD\|227268
NZ_CP018622.1\|WP_101933131.1\|1613670_1614240_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366010
NZ_CP018622.1\|WP_101934231.1\|1625889_1626651_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226425

Protein	Function_ID	Function_description	E-value
NZ_CP018622.1\|WP_101933138.1\|1628691_1629600_-\|homoserine-O-succinyltransferase	gnl\|CDD\|335664	pfam04204, HTS, Homoserine O-succinyltransferase.	0
NZ_CP018622.1\|WP_073010391.1\|1629921_1630608_-\|CDP-diacylglycerol--serine-O-phosphatidyltransferase	gnl\|CDD\|224104	COG1183, PssA, Phosphatidylserine synthase [Lipid metabolism].	5.07541e-44
NZ_CP018622.1\|WP_164085395.1\|1631075_1631861_+\|phosphatidylserine-decarboxylase	gnl\|CDD\|179544	PRK03140, PRK03140, phosphatidylserine decarboxylase; Provisional.	6.63534e-123
NZ_CP018622.1\|WP_101934232.1\|1628258_1628519_+\|spore-coat-protein	gnl\|CDD\|182066	PRK09765, PRK09765, PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional.	0.00883408
NZ_CP018622.1\|WP_073010376.1\|1637317_1637821_-\|DUF4188-domain-containing-protein	gnl\|CDD\|316352	pfam13826, DUF4188, Domain of unknown function (DUF4188).	1.1174e-63
NZ_CP018622.1\|WP_077702018.1\|1609365_1610538_+\|sulfate-adenylyltransferase	gnl\|CDD\|235227	PRK04149, sat, sulfate adenylyltransferase; Reviewed.	0
NZ_CP018622.1\|WP_101933128.1\|1610556_1612335_+\|SLC13-family-permease	gnl\|CDD\|238535	cd01115, SLC13_permease, Permease SLC13 (solute carrier 13). The sodium/dicarboxylate cotransporter NaDC-1 has been shown to translocate Krebs cycle intermediates such as succinate, citrate, and alpha-ketoglutarate across plasma membranes rabbit, human, and rat kidney. It is related to renal and intestinal Na+/sulfate cotransporters and a few putative bacterial permeases. The SLC13-type proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium and various anions across biological membranes in all three kingdoms of life. A typical ArsB/NhaD permease is composed of 8-13 transmembrane helices.	1.0091e-38
NZ_CP018622.1\|WP_077701993.1\|1631863_1632448_-\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	1.9002e-34
NZ_CP018622.1\|WP_101933127.1\|1608390_1609203_+\|uroporphyrinogen-III-synthase	gnl\|CDD\|235647	PRK05928, hemD, uroporphyrinogen-III synthase; Reviewed.	1.24041e-33
NZ_CP018622.1\|WP_101933135.1\|1623817_1625347_+\|D-alanyl-D-alanine-carboxypeptidase/D-alanyl-D-alanine-endopeptidase	gnl\|CDD\|334815	pfam02113, Peptidase_S13, D-Ala-D-Ala carboxypeptidase 3 (S13) family.	8.54926e-128
NZ_CP018622.1\|WP_101933132.1\|1614777_1615644_+\|SDR-family-oxidoreductase	gnl\|CDD\|235853	PRK06701, PRK06701, short chain dehydrogenase; Provisional.	3.91663e-157
NZ_CP018622.1\|WP_101933130.1\|1613178_1613448_-\|hypothetical-protein	gnl\|CDD\|319924	cd07263, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	4.62403e-05
NZ_CP018622.1\|WP_101933141.1\|1634465_1635734_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	5.28603e-08
NZ_CP018622.1\|WP_101933140.1\|1632777_1633764_-\|GMP-reductase	gnl\|CDD\|235479	PRK05458, PRK05458, guanosine 5'-monophosphate oxidoreductase; Provisional.	0
NZ_CP018622.1\|WP_101933134.1\|1623024_1623384_-\|hypothetical-protein	gnl\|CDD\|131113	TIGR02058, lin0512_fam, conserved hypothetical protein. This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N-terminus. [Hypothetical proteins, Conserved].	4.4761e-58
NZ_CP018622.1\|WP_101933129.1\|1612345_1612951_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	5.22903e-123
NZ_CP018622.1\|WP_164085393.1\|1617311_1622756_+\|LPXTG-cell-wall-anchor-domain-containing-protein	gnl\|CDD\|227268	COG4932, COG4932, Predicted outer membrane protein [Cell envelope biogenesis, outer membrane].	0
NZ_CP018622.1\|WP_101933131.1\|1613670_1614240_-\|histidine-phosphatase-family-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	5.78954e-60
NZ_CP018622.1\|WP_101934231.1\|1625889_1626651_+\|AAA-family-ATPase	gnl\|CDD\|226425	COG3910, COG3910, Predicted ATPase [General function prediction only].	1.90683e-87

>NZ_CP018622.1|WP_101933135.1|1623817_1625347_+|D-alanyl-D-alanine-carboxypeptidase/D-alanyl-D-alanine-endopeptidase
MGWKICKKSTLLILAIIVLAIIPFAIQDEFVFTKVSNATENAEVQANSLEEKLSKILTNKRLDGTTTSVSIMHANTGDILFSENSDRRLHPASNMKLLTSVAALEILGENYQFTTQVRTNGKVKGKVLHGDLFLQGKGDPTLLKSDLKQMAVDMKEQGIRKVKGNIIADDTWYDDERLSQDLNWSDESFYTGAQVSALTLSPNKDYDAGTVIVHVLPQATESGKAIIEVTPKTDYIKIVNRTQIVDADKPKDIAIEREHGTNRIIVEGTMPKKATQVRSWVAVWEPTMYTLDVFQKTLHEEGIDFIGKTEALMKAAPVNSTILTEKESMPLKDLLIPFMKLSNNGHGEVLTKEMGKVVHGEGSWKKGLAVMEQVMEQFGASTDTMLLRDGSGMSHKNMIPASELLQVLYHVQEQEWFPLFKNSLPVAGVEDRLVGGTLRHRMQEAPAKGNVIAKTGSLKGMSTLSGYVTTKDQQPLIFSIMINNYIGSSEEITAIEDQIASTLAAHELE
>NZ_CP018622.1|WP_101933134.1|1623024_1623384_-|hypothetical-protein
MNQILFIQTGMGIDVHGQNITKAAVRAVENAIWFNSMPGIEHSLPEQKLENMKVNVRLAVPLDRNLLDTEKVKAVVPYGSVTVDVTDGGMATSSGVILKDKNDENDLMYMVNAAVEVGY
>NZ_CP018622.1|WP_164085393.1|1617311_1622756_+|LPXTG-cell-wall-anchor-domain-containing-protein
MKKQLSVLFIVFLLLQTISSSLAFPMQINAQGISNDGLINNMELMDTLGEIVPLEDIQQATHLKVDWSVQGIAAEPNKDYTDQLPTAIKIDEKQEEKLLVAETEVGSYVVDKDNTLTIRFNKEIHQLPEASGTFAVKIAKTAEDTEADEQQQAGDSAVNQDETGSDEEQTAENATDAKEKENSDEKANSEAEVEEPVEEEQQKTAEQASEKVAPLKAIEEDILTRYEVTYETAETGEPIEKPGLGSIIAIKYWWELPNRHGYKEGDTYSFQVPSELDVYSKVDLAEMKFDGKTIGYLSVTKDGTATIEFTKFIEEYSKISGNFEIWTELSEETVINKDKELVITPIEGKESMTIPIDFNPGGSAVEKKGIPNRSYNAEEIEWTVDFNKTLETIRNAKLIDPIEEGQALKEGSIKLYHLETKLNGEVTQGEEVDPNSYTIGKTAGGKDFAIAFKDDIRSAYRLVYVTDITNEDDDTFKNKATLTGESFDDVRADATVKVGRGKALEKKAVDYDRDNQEITWEIRYNYNQKNIAQKAALLKDFFNGSQELVEDSFEVREITLNENGKEVGKGKFVTNYTVTPRQQDGKNGFHLQFNEDISSAYKIVYKTKASERVFDGEEIINTVNSGEHTDEGKQQIGQMILFKNHSNPNYKDKTVEWQISFNHDSQKMSNVVLEDVFTNKGLTLLKDEESGNFFRIQKEGGALEEGTDYIISKNEADQFVIQFKNTITEPHWINYTTTFDYDQLANKSEDFINQANLSWDDANGEPKDKSAKNKFTPDEYTKQNGFKNGSYNAVTKEITWNIGVNYNLKTLDNAVVKDFIQGNQQLLQDSITVHLMELTGGKNGTKKKEAIPGEDYSIEFMENEQGEPGFQINFVKEINQPYLIEYKTSLNDLDLVAKNYHNTANLYNGNQQETELDASVSIPYGGKYTEKSGNQNGKMIDWKVNINFGQSQVSNATIDDKPSNNQALLEDSFHLYATSVDEAGKVTKGELLELNKDYTLDLEQNPETFTLKFTEEINEPYILEYQSMILEKPGKTVSNNISFNGENIDEVINESQDTVKVERTNGMGEGTGEIGRLTVHKTNRDTGDSLPGATFTLKDQESGITVGTKTTDEDGKVVFDRLLYGTYTLIEESAPDGYLIEQKQREIIIDESYVEDSEVEVGNQLMVTNAKIIRDVQLNKVDKETGASLSGATFALQQKVGDAYKVIDRLTTNPAGIIYKGDLEPGEYQFVETKAPNGYELNTEPIPFTIGEKQTEIRTLTAKNKKLASVELTKLAKENGNRLEGAAFKLEREDGSVVEPLLRTDEDGRIFVTNLQPGTYQFVETKAPTYYQLNEEPIPFTIKAGDSSTVTVTANNELIRGKAELTKVDKDDEATKLDGAVFELQNEAGKTLQEDLTTNKEGKLVVENLKPGKYKFVEIKAPEHYKLDTTPIPFTIEKSKTEADVKVAAVKATNELIPGSVELVKVDEDDEDKTLAGAVFELQNEAGETVKKDITTDENGKIVVENLRPGKYQFVETKAPAYYELDADPIAFEIEKSQKEQLRIIAKNKLITGKVELTKADQDNNYAPLAGAVFELQNEAGETLQEDLTTDKAGKIVVENLKPGNYKFVETKAPEHYKLDATPIPFTIEKSKTKEDVEVAVVKAENELIRGSVELVKVDEDDEDKTLAGAVFELQNEAGETLQEDLTTDKAGKIVVENLKPGKYQFVETKAPEHYKLDATPIPFTIAFSQENSVQLKVENTINPEEPVTDPGNNDNEPTQKNPESSKDDPSKAGEKIGGKLPQTGEEWLRYMMILGVSLFIVGGFLIISRRRKA
>NZ_CP018622.1|WP_101933132.1|1614777_1615644_+|SDR-family-oxidoreductase
MKPENMQKGSTPRQRQSRQPGLESEMHPLPHQPLEYKGSEKLAGKVALITGGDSGIGRAVAILYAKEGAHVAISYLDEHEDAEKTKELVEAEGGKCMLLPGDIKSATHCQNLVENTVEAFGKINILVNNAAIQFIHEDVLDISDEQMEDVFRVNFFSQFYLTKAAVRHMHVGDSIINTSSINAYRGNPILMDYSATKGAITAFTRSIAQSLAKKGIRANSVAPGPVWTPLIPSSFDEDGVENFGQDTLMNRPGQPSEHAWPYVMLASDEASYMTGQAIHINGGTWTSS
>NZ_CP018622.1|WP_101933131.1|1613670_1614240_-|histidine-phosphatase-family-protein
MTTICFIRHGQTNWNKQGKLQGKTDIPLNDTGREQAQACGKYLHAHDYDILICSPLLRAKETADIINQHLHLPIIKMDDFKERSFGDAEGLTMEERKHRYPSGHFANQEERVDFNQRVMAGVEKVNEQYPQQRVLLVAHGAVINAILAEVSNGEIGSGKTSLMNGCMSNIHLKEQTWHIKDYNQVGHLQ
>NZ_CP018622.1|WP_101933130.1|1613178_1613448_-|hypothetical-protein
MDLPVLFEDVTNNRIVLKVGETPLTLWKADTTYESNRPPHFNFFSEDIETAHSHLRNKGVTVEAIETYDSMSSFVFYDPFGNKLEVCSF
>NZ_CP018622.1|WP_101933129.1|1612345_1612951_+|adenylyl-sulfate-kinase
MSKSKHISWHGSLVTKEMRQKRNKHKSAVLWFTGLSGSGKSTITVELERKLYQLGIHTYRLDGDNIRHGLNKNLGFTAEERSENIRRIGEVSKLFIDAGVLALTAFISPYRDDRNLVRALLPSNEFIEIYVKCRLEVCEERDPKGLYKKARAGEIAGFTGIDAPYESPISPELTIDTEKLSVEEAAQRVIHYLLEKEYLTV
>NZ_CP018622.1|WP_101933128.1|1610556_1612335_+|SLC13-family-permease
MSYEMIVVAVVVCGMIGALIMDIARPVIIVFTALTILLVTDILKPEDALAGFSNEGMLTIALLFVIAGAIQKSGMIEVIMKGWLNKSNRFIGAMIRVLIPTSALSAFFNNTPIVVTFTPMLKNWCEEHQIAPSKFLIPLSYATILGGTITLMGTSTNLVVHGMLIDYGYDGFSLFQLAVIGIPITVVGLTYLIVIGRHFLPNQKGFQQQVRKGSKEYMAELIVENSFPGINQTIKEARLKGLKGIYLLGIVRDKEHVFPIRSTTRIQAGDRLIFTGLITALTGVQVTKGLTLSMGKPMDVDELKKAHSTIVEAVVSHQSSLLYQSIKQAKFRSLYDAGVIAVHRNNEQLQSKIGDILLKPGDHLLLLAGADFIDKYQQSEDFYVIMPFHCMHMVHRPSFKGWLTILIFLIMIILITIGVLSMFKAMAIVVAVMLAMKVVTMEEIKKYIHFDVLVLIACSFGIGIATMKSGLAPWIADGILTVGKPLGLFTLLLLIYIVTNIFTEIITNSAAAILMIPIAFEMAETLGLDPMGFAVTVTIAASASFITPIGYQTNLIVYGPGGYTFKDYVKIGTPLSILVMFITVIIVYFWWF
>NZ_CP018622.1|WP_077702018.1|1609365_1610538_+|sulfate-adenylyltransferase
MRSTTEDVSNIPHGGKLIQRQVNCEERDMFLQIIGNLKTITLNRWHVSDLELIANGGFSPLIGFMGKSDYTRVVEEMRLEDGTIWSIPITLDVEQTQAETLEIGEQIALVGEDNEVYGVLDLTEKFHYEKEKEAKLVYGTTDPEHPGVRKVYEKGEVYVAGPIRLLQKKSNNPFANYQLDPVETRQLFKDLGWKTIVGFQTRNPVHRAHEYIQKCALESVDGLLLNPLVGETKSDDISPAIRMKSYEVILDKYFPPDRTRLVIYPAAMRYAGPREAILHAIVRKNYGCTHFIVGRDHAGVGDFYGTYEAQELIRQYEAELGIQIFAFEHAFYCTTCENMATKKTCPHDKTYHVHLSGTKVREKLRNGEHLPKEFSRPEVAKVLIEGLRQR
>NZ_CP018622.1|WP_101933127.1|1608390_1609203_+|uroporphyrinogen-III-synthase
MKGLCNKKIGIAATRRAEQIATLVQKNNAIPAIFSIQGEQVLDEAICVENISCLLSEPFDLIILTTGIGVESLERVAQSQNCDADFIQKLGRTTLAVRGSKTLHWLKKHAISPTFISQDGTMEDLISTLAHADEQGKRVYIQAYNQDDAWLQAALEHLGYSVYLAKPYYYRQPEAEILTALKAAIIDQSLDAVIFTSKKQVQNLFQSLSNEEQKQVVAAFHKLVLAEAVGKVTAQELKNYHIQNVFYPTKPKMGRMVIEMNRYYEQHVVS
>NZ_CP018622.1|WP_101934231.1|1625889_1626651_+|AAA-family-ATPase
MSKLTSDTAFLKTVHLKKDRLPANADEFPFHLPVIKDFPGISFHPNVTYIIGENGMGKSTLLEAIAIALGFNPEGGTKNFNFSSYDSHSSLDQYIQIARGAYQPQDYFFFRAESFYNVATNIEELDEFASGGPRIIDSFGGTSLHEQSHGEAFFATFMHRFQGNGLYILDEPESALSPLRQLSMLRRIHDLVAEGSQFVISTHSPILMAYPSASILELTEDGMQETELEQTSHYKVMAQFFENKQRMLHHLFD
>NZ_CP018622.1|WP_101934232.1|1628258_1628519_+|spore-coat-protein
MRRPIGFGRPFFGPRPFFGPRPFFGPRPFFGPGFGFGGPGFFPGFGFGVAPFVGGLAGGLLAGSLVNAFAPPYYQGYGAYPPYYGY
>NZ_CP018622.1|WP_101933138.1|1628691_1629600_-|homoserine-O-succinyltransferase
MPITIPKQLPAHATLEKENIFIMDTVRATTQDIRPLNIVIVNLMPEKERTETQLLRLLGNSPLQVLVTFLHTATHDSKTVSKSHLNQFYQTFHSIKHKRFDGMIITGAPVEMLAFEEVNYWEELKMIMEWSKTHVTSVLHICWAAQAALYYHYGIGKYALPAKCTGVFPHTISHSTVELIRGFDDEFLAPHSRYTGTSLADVQADSRLMVLAATTDDDPFIMISKDEKHIMLTGHFEYDFDTLAEEYDRDRKKGLNPAIPKNYFPDNNPKKTPLHRWRSHAHLLFSNWLNYYVYQETPYEWK
>NZ_CP018622.1|WP_073010391.1|1629921_1630608_-|CDP-diacylglycerol--serine-O-phosphatidyltransferase
MNFKKQIPNLFTLGNLYCGYLSIGYTASNHYKNAAIFILIGMLLDSIDGRIARLLHVESPLGKELDSLADIITFGVAPSFLMYYTMLFDLGWIGLAISGLFPLFGAYRLARYNITAKEESLYHFTGIPITIAGGILATLILFREDIPSTFTMVIFILLCFLMVSTIQIPSLKKVRLPRNETIVTILIGMMLFMNHARSWRVFTSLLYIVIPLYLIYMTYRFIKIKASR
>NZ_CP018622.1|WP_164085395.1|1631075_1631861_+|phosphatidylserine-decarboxylase
MLKAWLKLFVELTGNNYVSQLLVRFTSSTWSRMLVPIFAKIYRINQEEMEKSLSEYQSLHQLFTRKLKFGCRSIESQPNCLVSPVDGVISDFGFVQDVEKYSIKNKQIRLEEMLGSKEKADVYRNGKYIILYLSPRHYHRIHSPVDGIIKESWVLGEKSYPVNSIGLKYGNSPLSTNYRRITEIQSELGNIAVVKVGALNVNSVHLTARSDKLGRGEELAYFSFGSTVVLFIERATFQFSPDIAGNNDISFGKSVGVFSNA
>NZ_CP018622.1|WP_077701993.1|1631863_1632448_-|DedA-family-protein
MTDLESFIVHYGYIGMFIVLILGIVGMPFPDEVLLTYVGYHVSLGNMSLNLAIFIAILGSISGISISYLLGQWLGVPFIKRFGPKLRIKEKQIDWVRNNFNKYGATFLIFGYFIPGIRHVTAYVAGFSKYHYFRFAVFAYIGAIFWASTFIILGNILGDQWEYITTFFSQASKIMWLIILTGVLFIILRKIKRN
>NZ_CP018622.1|WP_101933140.1|1632777_1633764_-|GMP-reductase
MDNVFDYEDIQLIPAKCIVRSRSECDTNVTLGKHTFKLPVVPANMQTIIDEKIALMLAENGYFYIMHRFEPEKRTDFIKDMHERGLIASISVGVKDEEYDFVEQLVADKLIPDYITIDIAHGHSESVIKMIQHIKKHVPESFLIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCSRAASKPIIADGGIRTHGDIAKSIRFGATMVMIGSLFAGHEESPGETIEKEGKVLKEYFGSASEFQKGEKKNVEGKKMLVEHKGSLKDTLQEMEQDLQSSISYAGGKKLEAIRTVDYVVVKNSIFNGDKIIY
>NZ_CP018622.1|WP_101933141.1|1634465_1635734_+|helix-turn-helix-transcriptional-regulator
MIDIGYIIKLHRTKQNMTQEALSEGIVSLSYLSKIENQKAKANSEIIQALCNRLGIELTNIPDSNFEDKCKKWYDMLYDRFDKQEIITRYEELQNVMDKSINNQTIMFEIHKIRYYIILRDIQKALHKINELHEMADSFNPPHKYFWNKFQGNYYSLKEEHQQSLQCYKKAEKVHRSAEIEEEEIADLYYAISIQHSHLLNGLETINYAEKAMAEFQRKYNFIRCAQCHILLGISYQRIRMNDVALENYNQAMYLGKLNNEEQVIQLAYLNLGLFYFTTGNSKKSIENYELALKTTDLDYELRLDAITHLIHSFYKSNNWQKTKVYLRLGEEALNFTQDKGYHKFYSYVIKTYTHLLNGDLKNFKMVLADEFIPYLKQKKAYNYLVFYSRLLATHLEKMGKYKEAMKYYKVANESYDKIIKL
>NZ_CP018622.1|WP_164085399.1|1635749_1635890_+|hypothetical-protein
MKKFVVSFIFGALLIGGFLFTNGAQNEDKLTMNANIPKPTTTYETS
>NZ_CP018622.1|WP_073010376.1|1637317_1637821_-|DUF4188-domain-containing-protein
MIKQVYSGRYTTENEEDIVVFLIGMRVNRRLAVHKWLPVFLAMPRMIKELYTYKDTLGFLSMESYFGLRTTLMVQYWRSTEDLLAYAKGKQHLAAWKRFNQKASHTNAVGIYHETYIVPKGNYEAIYANMPLYGLAKANEHIPVSSKRTTAKQRLTQATVNQINDLK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP018622_2	2.1\|528382\|32\|NZ_CP018622\|CRISPRCasFinder	528382-528413	32	NZ_CP018622.1	15975-16006	1	0.969
NZ_CP018622_2	2.4\|528385\|31\|NZ_CP018622\|CRT	528385-528415	31	NZ_CP018622.1	15973-16003	1	0.968

1. spacer 2.1|528382|32|NZ_CP018622|CRISPRCasFinder matches to position: 15975-16006, mismatch: 1, identity: 0.969

agcaggctataaatctatcatgcatatacacg	CRISPR spacer
agcaggctatgaatctatcatgcatatacacg	Protospacer
**********.*********************

2. spacer 2.4|528385|31|NZ_CP018622|CRT matches to position: 15973-16003, mismatch: 1, identity: 0.968

aggctataaatctatcatgcatatacacgat	CRISPR spacer
aggctatgaatctatcatgcatatacacgat	Protospacer
*******.***********************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP018622_1	1.5\|485466\|33\|NZ_CP018622\|PILER-CR,CRISPRCasFinder,CRT	485466-485498	33	KT001914	Caulobacter phage Seuss, complete genome	6-38	6	0.818
NZ_CP018622_1	1.5\|485466\|33\|NZ_CP018622\|PILER-CR,CRISPRCasFinder,CRT	485466-485498	33	KT001914	Caulobacter phage Seuss, complete genome	83396-83428	6	0.818
NZ_CP018622_2	2.4\|528385\|31\|NZ_CP018622\|CRT	528385-528415	31	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	214490-214520	7	0.774
NZ_CP018622_2	2.4\|528385\|31\|NZ_CP018622\|CRT	528385-528415	31	KY695241	Wolbachia phage sr1WOdamA clone contig3 genomic sequence	9924-9954	7	0.774
NZ_CP018622_1	1.5\|485466\|33\|NZ_CP018622\|PILER-CR,CRISPRCasFinder,CRT	485466-485498	33	MK250021	Prevotella phage Lak-B2, complete genome	163199-163231	9	0.727
NZ_CP018622_1	1.5\|485466\|33\|NZ_CP018622\|PILER-CR,CRISPRCasFinder,CRT	485466-485498	33	MK250024	Prevotella phage Lak-B5, complete genome	157207-157239	9	0.727
NZ_CP018622_1	1.5\|485466\|33\|NZ_CP018622\|PILER-CR,CRISPRCasFinder,CRT	485466-485498	33	MK250028	Prevotella phage Lak-B9, complete genome	162090-162122	9	0.727
NZ_CP018622_1	1.5\|485466\|33\|NZ_CP018622\|PILER-CR,CRISPRCasFinder,CRT	485466-485498	33	MK250023	Prevotella phage Lak-B4, complete genome	163102-163134	9	0.727
NZ_CP018622_1	1.5\|485466\|33\|NZ_CP018622\|PILER-CR,CRISPRCasFinder,CRT	485466-485498	33	MK250025	Prevotella phage Lak-B6, complete genome	160400-160432	9	0.727
NZ_CP018622_1	1.5\|485466\|33\|NZ_CP018622\|PILER-CR,CRISPRCasFinder,CRT	485466-485498	33	MK250022	Prevotella phage Lak-B3, complete genome	160415-160447	9	0.727
NZ_CP018622_1	1.5\|485466\|33\|NZ_CP018622\|PILER-CR,CRISPRCasFinder,CRT	485466-485498	33	MK250027	Prevotella phage Lak-B8, complete genome	163313-163345	9	0.727
NZ_CP018622_1	1.5\|485466\|33\|NZ_CP018622\|PILER-CR,CRISPRCasFinder,CRT	485466-485498	33	MK250026	Prevotella phage Lak-B7, complete genome	163318-163350	9	0.727
NZ_CP018622_1	1.5\|485466\|33\|NZ_CP018622\|PILER-CR,CRISPRCasFinder,CRT	485466-485498	33	MK250020	Prevotella phage Lak-B1, complete genome	162070-162102	9	0.727
NZ_CP018622_1	1.7\|485598\|34\|NZ_CP018622\|CRISPRCasFinder,CRT	485598-485631	34	NZ_CP047395	Bacillus vietnamensis strain 151-6 plasmid p6, complete sequence	32511-32544	9	0.735
NZ_CP018622_2	2.1\|528382\|32\|NZ_CP018622\|CRISPRCasFinder	528382-528413	32	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	214492-214523	9	0.719
NZ_CP018622_2	2.1\|528382\|32\|NZ_CP018622\|CRISPRCasFinder	528382-528413	32	KY695241	Wolbachia phage sr1WOdamA clone contig3 genomic sequence	9926-9957	9	0.719
NZ_CP018622_1	1.3\|485329\|35\|NZ_CP018622\|PILER-CR,CRISPRCasFinder,CRT	485329-485363	35	NZ_CP037428	Myroides odoratimimus strain G13 plasmid pFM-G13, complete sequence	13980-14014	10	0.714
NZ_CP018622_2	2.1\|528382\|32\|NZ_CP018622\|CRISPRCasFinder	528382-528413	32	NZ_CP043831	Bacillus sp. BS98 plasmid unnamed1	1643-1674	10	0.688
NZ_CP018622_2	2.4\|528385\|31\|NZ_CP018622\|CRT	528385-528415	31	MK250029	Prevotella phage Lak-C1, complete genome	286426-286456	10	0.677
NZ_CP018622_2	2.4\|528385\|31\|NZ_CP018622\|CRT	528385-528415	31	MK250019	Prevotella phage Lak-A2, complete genome	241187-241217	10	0.677
NZ_CP018622_2	2.1\|528382\|32\|NZ_CP018622\|CRISPRCasFinder	528382-528413	32	MK250029	Prevotella phage Lak-C1, complete genome	286428-286459	11	0.656
NZ_CP018622_2	2.1\|528382\|32\|NZ_CP018622\|CRISPRCasFinder	528382-528413	32	MK250019	Prevotella phage Lak-A2, complete genome	241189-241220	11	0.656

1. spacer 1.5|485466|33|NZ_CP018622|PILER-CR,CRISPRCasFinder,CRT matches to KT001914 (Caulobacter phage Seuss, complete genome) position: , mismatch: 6, identity: 0.818

agtat-tatttttaaacaatatagtattttgaaa	CRISPR spacer
-atatatatttataaaaaatatagtattttgagt	Protospacer
 .*** ***** **** ***************.

2. spacer 1.5|485466|33|NZ_CP018622|PILER-CR,CRISPRCasFinder,CRT matches to KT001914 (Caulobacter phage Seuss, complete genome) position: , mismatch: 6, identity: 0.818

agtat-tatttttaaacaatatagtattttgaaa	CRISPR spacer
-atatatatttataaaaaatatagtattttgagt	Protospacer
 .*** ***** **** ***************.

3. spacer 2.4|528385|31|NZ_CP018622|CRT matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.774

aggctataaatctatcatgcatatacacgat	CRISPR spacer
acgctataaatctatcatgcaaatatgtttt	Protospacer
* ******************* ***...  *

4. spacer 2.4|528385|31|NZ_CP018622|CRT matches to KY695241 (Wolbachia phage sr1WOdamA clone contig3 genomic sequence) position: , mismatch: 7, identity: 0.774

aggctataaatctatcatgcatatacacgat	CRISPR spacer
gctctataaatttatcatgcatatgcaccct	Protospacer
.  ********.************.***  *

5. spacer 1.5|485466|33|NZ_CP018622|PILER-CR,CRISPRCasFinder,CRT matches to MK250021 (Prevotella phage Lak-B2, complete genome) position: , mismatch: 9, identity: 0.727

agtattatttttaaacaatatagtattttgaaa	CRISPR spacer
gatgatatttttaaagaatatagtaatttatat	Protospacer
..*. ********** ********* ***. *

6. spacer 1.5|485466|33|NZ_CP018622|PILER-CR,CRISPRCasFinder,CRT matches to MK250024 (Prevotella phage Lak-B5, complete genome) position: , mismatch: 9, identity: 0.727

agtattatttttaaacaatatagtattttgaaa	CRISPR spacer
gatgatatttttaaagaatatagtaatttatat	Protospacer
..*. ********** ********* ***. *

7. spacer 1.5|485466|33|NZ_CP018622|PILER-CR,CRISPRCasFinder,CRT matches to MK250028 (Prevotella phage Lak-B9, complete genome) position: , mismatch: 9, identity: 0.727

agtattatttttaaacaatatagtattttgaaa	CRISPR spacer
gatgatatttttaaagaatatagtaatttatat	Protospacer
..*. ********** ********* ***. *

8. spacer 1.5|485466|33|NZ_CP018622|PILER-CR,CRISPRCasFinder,CRT matches to MK250023 (Prevotella phage Lak-B4, complete genome) position: , mismatch: 9, identity: 0.727

agtattatttttaaacaatatagtattttgaaa	CRISPR spacer
gatgatatttttaaagaatatagtaatttatat	Protospacer
..*. ********** ********* ***. *

9. spacer 1.5|485466|33|NZ_CP018622|PILER-CR,CRISPRCasFinder,CRT matches to MK250025 (Prevotella phage Lak-B6, complete genome) position: , mismatch: 9, identity: 0.727

agtattatttttaaacaatatagtattttgaaa	CRISPR spacer
gatgatatttttaaagaatatagtaatttatat	Protospacer
..*. ********** ********* ***. *

10. spacer 1.5|485466|33|NZ_CP018622|PILER-CR,CRISPRCasFinder,CRT matches to MK250022 (Prevotella phage Lak-B3, complete genome) position: , mismatch: 9, identity: 0.727

agtattatttttaaacaatatagtattttgaaa	CRISPR spacer
gatgatatttttaaagaatatagtaatttatat	Protospacer
..*. ********** ********* ***. *

11. spacer 1.5|485466|33|NZ_CP018622|PILER-CR,CRISPRCasFinder,CRT matches to MK250027 (Prevotella phage Lak-B8, complete genome) position: , mismatch: 9, identity: 0.727

agtattatttttaaacaatatagtattttgaaa	CRISPR spacer
gatgatatttttaaagaatatagtaatttatat	Protospacer
..*. ********** ********* ***. *

12. spacer 1.5|485466|33|NZ_CP018622|PILER-CR,CRISPRCasFinder,CRT matches to MK250026 (Prevotella phage Lak-B7, complete genome) position: , mismatch: 9, identity: 0.727

agtattatttttaaacaatatagtattttgaaa	CRISPR spacer
gatgatatttttaaagaatatagtaatttatat	Protospacer
..*. ********** ********* ***. *

13. spacer 1.5|485466|33|NZ_CP018622|PILER-CR,CRISPRCasFinder,CRT matches to MK250020 (Prevotella phage Lak-B1, complete genome) position: , mismatch: 9, identity: 0.727

agtattatttttaaacaatatagtattttgaaa	CRISPR spacer
gatgatatttttaaagaatatagtaatttatat	Protospacer
..*. ********** ********* ***. *

14. spacer 1.7|485598|34|NZ_CP018622|CRISPRCasFinder,CRT matches to NZ_CP047395 (Bacillus vietnamensis strain 151-6 plasmid p6, complete sequence) position: , mismatch: 9, identity: 0.735

acttttggcattaatattggtctaagaattagcg	CRISPR spacer
tcaattggcattaatactggtcttagaatatcgg	Protospacer
 *  ************.****** *****    *

15. spacer 2.1|528382|32|NZ_CP018622|CRISPRCasFinder matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

agcaggctataaatctatcatgcatatacacg	CRISPR spacer
tagacgctataaatctatcatgcaaatatgtt	Protospacer
 . * ******************* ***...

16. spacer 2.1|528382|32|NZ_CP018622|CRISPRCasFinder matches to KY695241 (Wolbachia phage sr1WOdamA clone contig3 genomic sequence) position: , mismatch: 9, identity: 0.719

agcaggctataaatctatcatgcatatacacg	CRISPR spacer
tttgctctataaatttatcatgcatatgcacc	Protospacer
  ..  ********.************.***

17. spacer 1.3|485329|35|NZ_CP018622|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP037428 (Myroides odoratimimus strain G13 plasmid pFM-G13, complete sequence) position: , mismatch: 10, identity: 0.714

gatcaccataataaactgtttcaaaatctccacta	CRISPR spacer
tatcatcataatcaactgtttcaaaacgataagtt	Protospacer
 ****.****** *************.  . * *

18. spacer 2.1|528382|32|NZ_CP018622|CRISPRCasFinder matches to NZ_CP043831 (Bacillus sp. BS98 plasmid unnamed1) position: , mismatch: 10, identity: 0.688

agcaggctataaatctatcatgcatatacacg	CRISPR spacer
cacaggctataaatctaccctgcattaaagga	Protospacer
 .***************.* *****  * . .

19. spacer 2.4|528385|31|NZ_CP018622|CRT matches to MK250029 (Prevotella phage Lak-C1, complete genome) position: , mismatch: 10, identity: 0.677

aggctataaatctatcatgcatatacacgat	CRISPR spacer
ctgctctaaatctatcttgcatatatttaca	Protospacer
  *** ********** ********. ..

20. spacer 2.4|528385|31|NZ_CP018622|CRT matches to MK250019 (Prevotella phage Lak-A2, complete genome) position: , mismatch: 10, identity: 0.677

aggctataaatctatcatgcatatacacgat	CRISPR spacer
ctgctctaaatctatcttgcatatatttaca	Protospacer
  *** ********** ********. ..

21. spacer 2.1|528382|32|NZ_CP018622|CRISPRCasFinder matches to MK250029 (Prevotella phage Lak-C1, complete genome) position: , mismatch: 11, identity: 0.656

agcaggctataaatctatcatgcatatacacg	CRISPR spacer
gttctgctctaaatctatcttgcatatattta	Protospacer
. .  *** ********** ********. ..

22. spacer 2.1|528382|32|NZ_CP018622|CRISPRCasFinder matches to MK250019 (Prevotella phage Lak-A2, complete genome) position: , mismatch: 11, identity: 0.656

agcaggctataaatctatcatgcatatacacg	CRISPR spacer
gttctgctctaaatctatcttgcatatattta	Protospacer
. .  *** ********** ********. ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

272 : 30133

Bacillus_phage(25.81%)

terminase,integrase,capsid,portal,protease,tail,head

attL 983:997|attR 27625:27639

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_101932316.1\|272_656_-	DUF3168 domain-containing protein	A8ATA3	Listeria_phage	2.1e-17	41.1
WP_101932317.1\|655_1048_-	hypothetical protein	A0A2H4JA97	uncultured_Caudovirales_phage	3.1e-32	52.7
983:997	attL	NA	NA	NA	NA
WP_101932318.1\|1044_1422_-\|head,tail	phage head-tail adapter protein	A8ATA1	Listeria_phage	3.9e-24	47.4
WP_101934165.1\|1399_1666_-	hypothetical protein	A0A059T7R0	Listeria_phage	1.2e-19	56.5
WP_101932319.1\|1710_2844_-\|capsid	phage major capsid protein	D2XR18	Bacillus_phage	3.0e-152	73.5
WP_101934166.1\|2861_3602_-\|protease	Clp protease ClpP	D2XR17	Bacillus_phage	3.2e-70	62.7
WP_101932320.1\|3628_4771_-\|portal	phage portal protein	A0A2H4JBZ5	uncultured_Caudovirales_phage	1.5e-119	54.8
WP_101932321.1\|4775_6446_-\|terminase	terminase large subunit	D2XR15	Bacillus_phage	5.9e-213	64.9
WP_101932322.1\|6442_6745_-\|terminase	terminase	A0A0U4B062	Bacillus_phage	7.2e-29	69.6
WP_101932323.1\|6998_7349_-	HNH endonuclease	A0A0U4JWW4	Bacillus_phage	6.7e-26	56.6
WP_077704982.1\|7617_7959_-	hypothetical protein	NA	NA	NA	NA
WP_101932325.1\|8038_8707_-	hypothetical protein	NA	NA	NA	NA
WP_101932326.1\|8826_9096_+	DUF3892 domain-containing protein	A0A059NT53	Lactococcus_phage	2.5e-12	51.1
WP_101932327.1\|9216_9741_-	hypothetical protein	Q5YA83	Bacillus_phage	4.0e-51	65.8
WP_101932328.1\|9740_11120_-	DEAD/DEAH box helicase	S5MA26	Brevibacillus_phage	9.7e-137	51.4
WP_101932329.1\|11112_11400_-	VRR-NUC domain-containing protein	A0A1L6BZE4	Pasteurella_phage	1.1e-18	50.6
WP_101934167.1\|11710_14122_-	virulence-associated protein E	A0A0A7RTG3	Clostridium_phage	8.8e-202	44.9
WP_101932330.1\|14265_14664_-	hypothetical protein	NA	NA	NA	NA
WP_101932331.1\|14676_14979_-	hypothetical protein	L7TJ47	Halovirus	1.3e-17	47.5
WP_101932332.1\|14975_15584_-	HNH endonuclease	M1PKJ5	Streptococcus_phage	3.6e-35	41.1
WP_101932333.1\|15580_15820_-	hypothetical protein	A0A2H4JCC5	uncultured_Caudovirales_phage	3.5e-18	60.8
WP_101934168.1\|15834_17811_-	DNA polymerase	H7BVQ1	unidentified_phage	9.7e-215	57.5
WP_101934169.1\|17810_18548_-	DUF2815 family protein	A0A0A7RVM4	Clostridium_phage	1.3e-26	38.5
WP_101932334.1\|18628_19804_-	DUF2800 domain-containing protein	H7BVP9	unidentified_phage	9.2e-96	49.7
WP_101932335.1\|19803_20247_-	hypothetical protein	NA	NA	NA	NA
WP_101932336.1\|20339_20642_-	hypothetical protein	NA	NA	NA	NA
WP_101932337.1\|20864_21071_-	hypothetical protein	NA	NA	NA	NA
WP_101932338.1\|21060_21240_-	hypothetical protein	NA	NA	NA	NA
WP_164085235.1\|21245_21746_-	hypothetical protein	O64162	Bacillus_phage	2.7e-36	45.2
WP_101932340.1\|21852_22113_-	hypothetical protein	NA	NA	NA	NA
WP_164085244.1\|22174_22384_+	hypothetical protein	NA	NA	NA	NA
WP_101932342.1\|22502_22724_-	hypothetical protein	NA	NA	NA	NA
WP_164085246.1\|22738_22885_-	hypothetical protein	NA	NA	NA	NA
WP_101932343.1\|22881_23076_-	helix-turn-helix transcriptional regulator	A0A0P0IJY1	Lactobacillus_phage	5.0e-07	45.2
WP_101932344.1\|23168_23333_+	YjzC family protein	A0A0A7RTS6	Clostridium_phage	2.7e-14	75.5
WP_101932345.1\|24279_24561_-	group-specific protein	A0A1B1P7U4	Bacillus_phage	7.2e-23	54.7
WP_077705031.1\|24587_24800_-	DNA-binding protein	A6M975	Geobacillus_virus	4.5e-09	55.6
WP_077705034.1\|24996_25329_+	XRE family transcriptional regulator	R9TNF4	Paenibacillus_phage	1.6e-29	62.0
WP_101932346.1\|25340_25802_+	ImmA/IrrE family metallo-endopeptidase	A0A0A7RTX7	Clostridium_phage	3.9e-34	48.3
WP_077705040.1\|25816_26950_+\|integrase	site-specific integrase	S5MBZ0	Brevibacillus_phage	2.5e-138	63.4
WP_073007322.1\|27026_28424_-	Fe-S cluster assembly protein SufB	NA	NA	NA	NA
27625:27639	attR	NA	NA	NA	NA
WP_077705046.1\|28488_28923_-	SUF system NifU family Fe-S cluster assembly protein	A0A0P0M6T0	Mycobacterium_phage	2.8e-13	37.0
WP_077705049.1\|28912_30133_-	cysteine desulfurase	Q2XUY6	environmental_halophage	1.5e-117	46.9

DBSCAN-SWA_2

107075 : 114328

Streptococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_101934170.1\|107075_107291_+	recombinase family protein	A0A0A8WIK3	Clostridium_phage	1.7e-11	45.8
WP_101932380.1\|108333_108921_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	1.7e-53	53.3
WP_073007535.1\|108955_109210_-	HPr family phosphocarrier protein	NA	NA	NA	NA
WP_101932381.1\|109423_110368_-	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	2.3e-49	37.5
WP_101932382.1\|110529_111489_-	uridine diphosphate-N-acetylglucosamine-binding protein YvcK	A1IMD5	Streptococcus_phage	1.0e-52	35.3
WP_101932383.1\|111490_112372_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	5.4e-08	31.4
WP_077705270.1\|112423_112894_-	8-oxo-dGTP diphosphatase	NA	NA	NA	NA
WP_123059375.1\|113338_114328_-	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	1.5e-86	52.3

DBSCAN-SWA_3

868249 : 932294

Streptococcus_phage(25.0%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_077702006.1\|868249_869221_-\|transposase	IS30 family transposase	NA	NA	NA	NA
WP_101932785.1\|869301_870255_-	hypothetical protein	NA	NA	NA	NA
WP_101932786.1\|870405_871116_+	hypothetical protein	NA	NA	NA	NA
WP_101932787.1\|871591_872944_-	Ktr system potassium transporter B	NA	NA	NA	NA
WP_164085339.1\|873552_875685_-	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	5.7e-229	58.2
WP_101932790.1\|875650_876034_-	winged helix-turn-helix transcriptional regulator	E4ZFI8	Streptococcus_phage	6.0e-28	54.9
WP_101932791.1\|876256_876496_+	hypothetical protein	NA	NA	NA	NA
WP_101932792.1\|876859_878245_+	hypothetical protein	NA	NA	NA	NA
WP_101932793.1\|878445_879777_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_101932794.1\|879773_880466_-	response regulator transcription factor	NA	NA	NA	NA
WP_101932795.1\|881136_882366_+\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_101932796.1\|882694_883924_+\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_101932797.1\|884496_885852_+\|protease	serine protease	A0A1B1IT49	uncultured_Mediterranean_phage	1.4e-23	29.6
WP_101932798.1\|886125_886896_+	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_101934199.1\|887013_887217_-	hypothetical protein	NA	NA	NA	NA
WP_101932799.1\|887640_888306_-	hypothetical protein	NA	NA	NA	NA
WP_101932800.1\|888372_888810_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_101932801.1\|888910_889798_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_101932802.1\|889990_890443_+	DNA gyrase inhibitor	NA	NA	NA	NA
WP_101932803.1\|890822_891128_-	hypothetical protein	NA	NA	NA	NA
WP_101932804.1\|891132_891810_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_101932805.1\|892196_893120_+	AEC family transporter	NA	NA	NA	NA
WP_101934200.1\|893124_893367_-	hypothetical protein	NA	NA	NA	NA
WP_101932806.1\|893996_895481_+	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	1.3e-25	25.3
WP_077706321.1\|895682_896615_-	hexose kinase	NA	NA	NA	NA
WP_101932807.1\|896925_897783_-	ketose-bisphosphate aldolase	NA	NA	NA	NA
WP_101932808.1\|897794_898952_-	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA
WP_101932809.1\|899080_899497_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_073009558.1\|899540_900362_-	PTS system mannose/fructose/sorbose family transporter subunit IID	NA	NA	NA	NA
WP_077706325.1\|900351_901119_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA
WP_101932810.1\|901144_901630_-	PTS N-acetylgalactosamine transporter subunit IIB	NA	NA	NA	NA
WP_101932811.1\|901865_903044_-	SIS domain-containing protein	NA	NA	NA	NA
WP_077706327.1\|903138_903879_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_101932812.1\|904628_905246_+	class I SAM-dependent methyltransferase	A0A0N9QQY7	Chrysochromulina_ericina_virus	5.1e-05	32.3
WP_101932813.1\|905382_905919_+	hypothetical protein	NA	NA	NA	NA
WP_101932814.1\|906290_907475_-	ROK family transcriptional regulator	NA	NA	NA	NA
WP_101932815.1\|907977_908919_-	DMT family transporter	NA	NA	NA	NA
WP_101932816.1\|909154_910333_+	galactokinase	NA	NA	NA	NA
WP_101932817.1\|910374_911883_+	UDP-glucose--hexose-1-phosphate uridylyltransferase	NA	NA	NA	NA
WP_101932818.1\|911898_912933_+	galactose mutarotase	NA	NA	NA	NA
WP_101932819.1\|913154_913625_-	hypothetical protein	NA	NA	NA	NA
WP_077706335.1\|913853_914477_-	CoA pyrophosphatase	NA	NA	NA	NA
WP_101932820.1\|915276_915486_-	YvrJ family protein	NA	NA	NA	NA
WP_101932821.1\|915915_916131_-	DUF2922 domain-containing protein	NA	NA	NA	NA
WP_101932822.1\|916163_916388_-	DUF1659 domain-containing protein	NA	NA	NA	NA
WP_101932823.1\|916662_917721_+	transcriptional regulator	NA	NA	NA	NA
WP_101932824.1\|917914_918655_-	WecB/TagA/CpsF family glycosyltransferase	NA	NA	NA	NA
WP_101932825.1\|918697_919489_-	teichoic acids export ABC transporter ATP-binding subunit TagH	NA	NA	NA	NA
WP_101932826.1\|919518_920325_-	ABC transporter permease	NA	NA	NA	NA
WP_101934201.1\|920437_922579_-	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA
WP_101932827.1\|922779_923178_+	glycerol-3-phosphate cytidylyltransferase	A0A1V0SGE7	Hokovirus	3.2e-16	37.8
WP_101932828.1\|923170_924364_+	CDP-glycerol--glycerophosphate glycerophosphotransferase	NA	NA	NA	NA
WP_101932829.1\|924703_925672_+	LytR family transcriptional regulator	NA	NA	NA	NA
WP_101932830.1\|925844_927455_-\|transposase	IS1182 family transposase	Q9MBP7	Staphylococcus_prophage	1.7e-55	30.6
WP_101932831.1\|927560_928646_-	undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase	NA	NA	NA	NA
WP_164085341.1\|928771_930808_-	hypothetical protein	NA	NA	NA	NA
WP_101932833.1\|931177_932294_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	1.2e-20	29.1

DBSCAN-SWA_4

1557949 : 1628519

Bacillus_phage(31.25%)

integrase,tRNA,coat,protease,transposase

attL 1557237:1557258|attR 1577525:1577546

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1557237:1557258	attL	NA	NA	NA	NA
WP_077702084.1\|1557949_1558717_+\|integrase	YidC family membrane integrase SpoIIIJ	NA	NA	NA	NA
WP_077702083.1\|1558713_1559328_+	protein jag	NA	NA	NA	NA
WP_077702082.1\|1559581_1560958_+\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA	NA	NA	NA
WP_101933107.1\|1560988_1562875_+\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA	NA	NA	NA
WP_077702080.1\|1562940_1563657_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA
WP_077702079.1\|1564229_1565114_+	nucleoid occlusion protein	S5VSZ7	Leptospira_phage	1.6e-15	37.1
WP_077702078.1\|1565460_1566234_+	ParA family protein	Q8JL10	Natrialba_phage	2.4e-23	28.6
WP_077702077.1\|1566214_1567054_+	ParB/RepB/Spo0J family partition protein	I3NLC2	Bifidobacterium_phage	2.5e-18	35.8
WP_077702076.1\|1567407_1568115_+	DUF554 domain-containing protein	NA	NA	NA	NA
WP_077702006.1\|1568201_1569173_-\|transposase	IS30 family transposase	NA	NA	NA	NA
WP_077702075.1\|1569472_1570075_-\|protease	spore protease YyaC	G3M9W0	Bacillus_virus	9.1e-15	29.3
WP_101933108.1\|1570163_1571189_+	hypothetical protein	NA	NA	NA	NA
WP_101933109.1\|1571216_1572245_+	mechanosensitive ion channel family protein	NA	NA	NA	NA
WP_077702071.1\|1573025_1573223_+	DUF951 domain-containing protein	NA	NA	NA	NA
WP_101933110.1\|1573467_1574568_+	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_073010523.1\|1574729_1575020_+	30S ribosomal protein S6	NA	NA	NA	NA
WP_101933111.1\|1575035_1575542_+	single-stranded DNA-binding protein	A0A290GHL8	Caldibacillus_phage	1.4e-45	56.0
WP_050350602.1\|1575561_1575792_+	30S ribosomal protein S18	NA	NA	NA	NA
WP_164085389.1\|1575903_1576692_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_101933113.1\|1576767_1577256_-	DUF1189 family protein	NA	NA	NA	NA
WP_164085391.1\|1577998_1578940_+	YybS family protein	NA	NA	NA	NA
1577525:1577546	attR	NA	NA	NA	NA
WP_101933115.1\|1579313_1581284_+	DHH family phosphoesterase	NA	NA	NA	NA
WP_101933116.1\|1581280_1581727_+	50S ribosomal protein L9	NA	NA	NA	NA
WP_077702058.1\|1582067_1583426_+	replicative DNA helicase	A0A1P8VVQ6	Streptococcus_phage	1.6e-123	50.7
WP_077702056.1\|1583961_1585248_+	adenylosuccinate synthase	A0A2P1EKE7	Megavirus	8.1e-69	35.9
WP_077702295.1\|1585912_1587142_+\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_073010498.1\|1587414_1588119_+	response regulator transcription factor	W8CYM9	Bacillus_phage	5.8e-45	42.7
WP_077702051.1\|1588128_1589961_+	cell wall metabolism sensor histidine kinase WalK	W8CYF6	Bacillus_phage	8.0e-38	35.3
WP_101933117.1\|1589960_1591277_+	hypothetical protein	NA	NA	NA	NA
WP_101933118.1\|1591280_1592225_+	hypothetical protein	NA	NA	NA	NA
WP_077702045.1\|1592221_1593004_+	MBL fold metallo-hydrolase	A0A0A0RVF5	Bacillus_phage	8.5e-13	23.8
WP_101933119.1\|1593175_1594393_+\|protease	serine protease	A0A1B1IT49	uncultured_Mediterranean_phage	1.3e-20	29.4
WP_077702042.1\|1594975_1595350_-	DoxX family protein	NA	NA	NA	NA
WP_077702041.1\|1595574_1597290_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	8.3e-53	30.2
WP_101933120.1\|1597587_1598250_+	peroxiredoxin	NA	NA	NA	NA
WP_101933121.1\|1598349_1599777_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_101933122.1\|1599902_1600475_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_073010723.1\|1600656_1601004_+	ligand-binding protein SH3	NA	NA	NA	NA
WP_073010466.1\|1601003_1601318_+	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA
WP_101933123.1\|1601707_1602448_+	phosphoadenylyl-sulfate reductase	M4W6M9	Bacillus_phage	4.1e-09	25.7
WP_101934229.1\|1602545_1604381_+	assimilatory sulfite reductase (NADPH) flavoprotein subunit	NA	NA	NA	NA
WP_101933124.1\|1604451_1606167_+	assimilatory sulfite reductase (NADPH) hemoprotein subunit	NA	NA	NA	NA
WP_101934230.1\|1606206_1606986_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_101933125.1\|1607003_1607735_+	sirohydrochlorin chelatase	NA	NA	NA	NA
WP_101933126.1\|1607765_1608407_+	NAD(P)-binding protein	NA	NA	NA	NA
WP_101933127.1\|1608390_1609203_+	uroporphyrinogen-III synthase	NA	NA	NA	NA
WP_077702018.1\|1609365_1610538_+	sulfate adenylyltransferase	A0A2K9L4R9	Tupanvirus	1.3e-46	32.2
WP_101933128.1\|1610556_1612335_+	SLC13 family permease	NA	NA	NA	NA
WP_101933129.1\|1612345_1612951_+	adenylyl-sulfate kinase	A0A2K9L4R9	Tupanvirus	3.4e-25	43.6
WP_101933130.1\|1613178_1613448_-	hypothetical protein	NA	NA	NA	NA
WP_101933131.1\|1613670_1614240_-	histidine phosphatase family protein	NA	NA	NA	NA
WP_101933132.1\|1614777_1615644_+	SDR family oxidoreductase	A0A2N9QUX2	Trichoplusia_ni_ascovirus	1.3e-57	46.8
WP_164085393.1\|1617311_1622756_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
WP_101933134.1\|1623024_1623384_-	hypothetical protein	NA	NA	NA	NA
WP_101933135.1\|1623817_1625347_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA
WP_101933136.1\|1625338_1625827_-	hypothetical protein	NA	NA	NA	NA
WP_101934231.1\|1625889_1626651_+	AAA family ATPase	NA	NA	NA	NA
WP_101934232.1\|1628258_1628519_+\|coat	spore coat protein	NA	NA	NA	NA

DBSCAN-SWA_5

2212434 : 2296357

Bacillus_phage(20.45%)

terminase,integrase,tRNA,holin,portal,capsid,plate,protease,tail,transposase

attL 2196403:2196427|attR 2295410:2295434

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2196403:2196427	attL	NA	NA	NA	NA
WP_077702498.1\|2212434_2212884_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA	NA	NA	NA
WP_101933376.1\|2212908_2213604_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA
WP_077706820.1\|2213611_2214067_+	ribosomal protein S18-alanine N-acetyltransferase	NA	NA	NA	NA
WP_101933377.1\|2214059_2215070_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	7.0e-68	44.4
WP_077702501.1\|2215273_2216446_+	rod shape-determining protein RodA	NA	NA	NA	NA
WP_077702502.1\|2216727_2218656_-	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	1.2e-52	29.5
WP_073013424.1\|2219003_2219666_+	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA
WP_077702503.1\|2220097_2220298_-	YdiK family protein	NA	NA	NA	NA
WP_077702504.1\|2220431_2221136_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_077702505.1\|2221963_2222248_+	co-chaperone GroES	A0A221S3C8	uncultured_virus	1.3e-19	53.8
WP_077702506.1\|2222307_2223945_+	chaperonin GroEL	A0A219YK78	uncultured_virus	1.8e-158	57.0
WP_101933378.1\|2224033_2225236_-\|integrase	site-specific integrase	S6C485	Thermus_phage	4.3e-80	45.6
WP_164085443.1\|2225239_2225401_-	hypothetical protein	NA	NA	NA	NA
WP_101933379.1\|2225375_2225903_-	ImmA/IrrE family metallo-endopeptidase	A0A2H4JA43	uncultured_Caudovirales_phage	8.8e-22	39.9
WP_101933380.1\|2225919_2226366_-	hypothetical protein	NA	NA	NA	NA
WP_101933381.1\|2226370_2226844_-	hypothetical protein	NA	NA	NA	NA
WP_101933382.1\|2227070_2227976_-	hypothetical protein	NA	NA	NA	NA
WP_164085444.1\|2228358_2228724_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_101933384.1\|2228892_2229159_+	helix-turn-helix transcriptional regulator	Q6SEA0	Lactobacillus_prophage	5.6e-09	46.0
WP_101933385.1\|2229170_2229902_+	phage regulatory protein	A0A1B1P7T7	Bacillus_phage	5.5e-38	40.6
WP_101933386.1\|2229901_2230210_+	hypothetical protein	NA	NA	NA	NA
WP_101933387.1\|2230313_2230589_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_101933388.1\|2230670_2230943_+	hypothetical protein	NA	NA	NA	NA
WP_101933389.1\|2231041_2231257_+	hypothetical protein	A0A290GDU5	Caldibacillus_phage	5.5e-07	45.3
WP_164085446.1\|2231349_2231520_+	hypothetical protein	NA	NA	NA	NA
WP_101933390.1\|2231512_2232445_+	hypothetical protein	A0A2H4JA52	uncultured_Caudovirales_phage	3.0e-105	58.8
WP_101933391.1\|2232446_2233259_+	recombinase RecT	A0A0A7RUP3	Clostridium_phage	2.5e-84	59.6
WP_164085448.1\|2233370_2233532_+	hypothetical protein	NA	NA	NA	NA
WP_101933392.1\|2233545_2234469_+	DnaD domain protein	A0EWX4	Staphylococcus_phage	6.5e-20	26.9
WP_101933393.1\|2234477_2234723_+	hypothetical protein	NA	NA	NA	NA
WP_101933394.1\|2234740_2235271_+	Holliday junction resolvase RecU	A0A2H4J3A4	uncultured_Caudovirales_phage	2.0e-34	46.5
WP_164085450.1\|2235305_2235467_+	hypothetical protein	NA	NA	NA	NA
WP_101933395.1\|2235463_2235937_+	hypothetical protein	NA	NA	NA	NA
WP_101933396.1\|2235929_2236559_+	hypothetical protein	A0A0S2SXN5	Bacillus_phage	4.8e-51	48.7
WP_101933397.1\|2236633_2237413_+	site-specific DNA-methyltransferase	A0A0H3UZL7	Geobacillus_virus	4.9e-77	61.3
WP_101933398.1\|2237424_2237631_+	hypothetical protein	NA	NA	NA	NA
WP_101933399.1\|2237630_2237813_+	hypothetical protein	NA	NA	NA	NA
WP_101933400.1\|2237874_2238075_+	hypothetical protein	A0A1L2JY31	Aeribacillus_phage	1.2e-19	72.7
WP_101933401.1\|2238263_2238989_+	hypothetical protein	NA	NA	NA	NA
WP_164085553.1\|2239005_2239095_+	hypothetical protein	NA	NA	NA	NA
WP_101933402.1\|2239185_2240070_+	AAA family ATPase	A0A1X9IGI7	Lactococcus_phage	1.3e-30	32.7
WP_101933403.1\|2240062_2240476_+	hypothetical protein	NA	NA	NA	NA
WP_101933404.1\|2240468_2241155_+	hypothetical protein	NA	NA	NA	NA
WP_101933405.1\|2241256_2241784_+	sigma-70 family RNA polymerase sigma factor	A0A0B5CTZ3	Listeria_phage	1.0e-06	22.7
WP_101933406.1\|2241880_2242741_+\|terminase	terminase small subunit	Q5YA77	Bacillus_phage	2.9e-62	48.0
WP_101934250.1\|2242761_2244069_+\|terminase	PBSX family phage terminase large subunit	A0A2P1JTW5	Anoxybacillus_phage	1.1e-153	63.6
WP_101933407.1\|2244071_2245607_+\|portal	phage portal protein	A0A1B1P7C8	Bacillus_phage	5.0e-134	49.7
WP_101933408.1\|2245599_2247102_+	hypothetical protein	A0A249XXB6	Clostridium_phage	1.3e-41	36.6
WP_101933409.1\|2247094_2247286_+	hypothetical protein	NA	NA	NA	NA
WP_101933410.1\|2247407_2248607_+\|terminase	terminase	A0A1B1P7E4	Bacillus_phage	7.5e-93	54.7
WP_101933411.1\|2248622_2249552_+\|capsid	phage major capsid protein	A0A249XXA7	Clostridium_phage	1.6e-05	24.2
WP_101933412.1\|2249568_2249952_+	hypothetical protein	NA	NA	NA	NA
WP_101933413.1\|2249951_2250332_+	DUF3199 family protein	A0A1B1P7D6	Bacillus_phage	7.8e-12	36.9
WP_101933414.1\|2250328_2250685_+	DUF3599 family protein	A0A249XXE9	Clostridium_phage	6.4e-08	30.5
WP_101933415.1\|2250681_2251191_+	HK97 gp10 family phage protein	A0A249XXA4	Clostridium_phage	6.5e-38	46.1
WP_101933416.1\|2251204_2251645_+\|portal	phage portal protein	NA	NA	NA	NA
WP_101934251.1\|2251683_2251893_+	hypothetical protein	NA	NA	NA	NA
WP_101933417.1\|2251894_2253220_+\|tail	phage tail sheath protein	A0A0A7S087	Clostridium_phage	5.9e-83	40.8
WP_101933418.1\|2253247_2253694_+\|tail	phage tail tube protein	Q708L9	Streptococcus_phage	2.3e-23	44.2
WP_101933419.1\|2253757_2254207_+\|portal	phage portal protein	S5MC65	Brevibacillus_phage	8.9e-07	28.2
WP_164085239.1\|2254233_2254383_+	hypothetical protein	NA	NA	NA	NA
WP_101933420.1\|2254401_2259015_+	transglycosylase SLT domain-containing protein	A0A0N7ACN7	Bacillus_phage	5.5e-51	37.1
WP_101933421.1\|2259007_2259673_+	LysM peptidoglycan-binding domain-containing protein	A0A090DBR9	Clostridium_phage	1.1e-24	32.8
WP_101933422.1\|2259702_2260674_+\|portal	phage portal protein	A0A2H4IZP4	uncultured_Caudovirales_phage	2.0e-35	33.1
WP_101933423.1\|2260673_2261054_+	DUF2577 domain-containing protein	NA	NA	NA	NA
WP_101933424.1\|2261065_2261476_+	DUF2634 domain-containing protein	X5JB38	Clostridium_phage	2.0e-13	33.6
WP_101933425.1\|2261477_2262566_+\|plate	baseplate J/gp47 family protein	H7BWD5	unidentified_phage	5.7e-84	45.7
WP_101933426.1\|2262549_2263137_+	DUF2313 domain-containing protein	S5MA71	Brevibacillus_phage	1.7e-37	46.6
WP_101933427.1\|2263129_2263411_+	ketopantoate hydroxymethyltransferase	NA	NA	NA	NA
WP_101933428.1\|2263413_2265753_+	hypothetical protein	W8CZP9	Erwinia_phage	2.7e-14	41.6
WP_164085452.1\|2265774_2265912_+	hypothetical protein	NA	NA	NA	NA
WP_101934252.1\|2265999_2266431_+\|holin	phage holin family protein	R9TMD4	Paenibacillus_phage	6.3e-18	35.5
WP_101933429.1\|2266488_2267568_+	N-acetylmuramoyl-L-alanine amidase	A0A1J0MS59	Bacillus_phage	6.3e-59	50.9
WP_101933430.1\|2268608_2268878_-	hypothetical protein	NA	NA	NA	NA
WP_101933431.1\|2268881_2269838_-	S8 family serine peptidase	NA	NA	NA	NA
WP_101932833.1\|2270000_2271117_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	1.2e-20	29.1
WP_101933432.1\|2271137_2272466_-	hypothetical protein	NA	NA	NA	NA
WP_101933433.1\|2272467_2273634_-	ATP-binding protein	NA	NA	NA	NA
WP_101933434.1\|2273810_2274026_+	hypothetical protein	A0A2I7SCF7	Paenibacillus_phage	2.7e-06	50.0
WP_101933435.1\|2274025_2274340_+	YolD-like family protein	A0A1P8CWP2	Bacillus_phage	8.1e-07	36.6
WP_101934253.1\|2275800_2276460_+	HNH endonuclease	NA	NA	NA	NA
WP_101933436.1\|2276456_2276924_+	DUF2004 domain-containing protein	NA	NA	NA	NA
WP_101933437.1\|2277352_2277955_-\|integrase	site-specific integrase	A0A0C5AN64	Paenibacillus_phage	2.5e-49	54.3
WP_101933438.1\|2278139_2278379_-	hypothetical protein	NA	NA	NA	NA
WP_101933439.1\|2278770_2279805_+	DUF418 domain-containing protein	NA	NA	NA	NA
WP_101934254.1\|2280482_2281523_+	DUF3231 family protein	NA	NA	NA	NA
WP_101933440.1\|2282724_2284080_+	sodium:alanine symporter family protein	NA	NA	NA	NA
WP_101933442.1\|2284861_2286343_+	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	8.0e-20	24.7
WP_101933443.1\|2286459_2288340_-	hypothetical protein	NA	NA	NA	NA
WP_101934255.1\|2288344_2290399_-	RND family transporter	NA	NA	NA	NA
WP_077702518.1\|2290911_2291487_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_101933221.1\|2291889_2293119_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_101933444.1\|2293800_2295222_-	carbon starvation protein A	NA	NA	NA	NA
WP_101934256.1\|2295820_2296357_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
2295410:2295434	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2970530 : 3025802

Streptococcus_phage(16.67%)

integrase,tRNA,coat,tail,transposase

attL 3010833:3010883|attR 3026993:3027043

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_077706860.1\|2970530_2971529_-\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_101933696.1\|2971855_2972899_-\|tRNA	tRNA 2-selenouridine(34) synthase MnmH	NA	NA	NA	NA
WP_077703097.1\|2972921_2973971_-	selenide, water dikinase SelD	NA	NA	NA	NA
WP_101933697.1\|2974315_2975518_+	putative glycoside hydrolase	NA	NA	NA	NA
WP_101932795.1\|2975793_2977023_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_073010764.1\|2977545_2978130_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_101933698.1\|2978215_2979187_-\|transposase	IS30 family transposase	NA	NA	NA	NA
WP_073010767.1\|2979934_2980330_+	transcriptional regulator Spx	NA	NA	NA	NA
WP_077703101.1\|2980853_2981537_+	adaptor protein MecA	NA	NA	NA	NA
WP_077703102.1\|2982095_2983286_+	hypothetical protein	NA	NA	NA	NA
WP_077703103.1\|2983444_2985253_+	oligoendopeptidase F	A0A1X9I5X5	Streptococcus_phage	2.0e-65	26.3
WP_077703104.1\|2985417_2985603_-	hypothetical protein	NA	NA	NA	NA
WP_077703105.1\|2986323_2987214_-	DsbA family protein	NA	NA	NA	NA
WP_073010782.1\|2987231_2987615_-	globin	NA	NA	NA	NA
WP_077703106.1\|2987734_2988301_-	CYTH domain-containing protein	NA	NA	NA	NA
WP_077703107.1\|2988469_2989078_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA
WP_077703108.1\|2989281_2990088_+	NAD kinase	NA	NA	NA	NA
WP_077703109.1\|2990104_2990998_+	RluA family pseudouridine synthase	NA	NA	NA	NA
WP_101933699.1\|2990963_2991710_-	bis(5'-nucleosyl)-tetraphosphatase PrpE	A0A2L0UZN4	Agrobacterium_phage	6.9e-12	28.8
WP_077703111.1\|2991880_2993266_+	magnesium transporter	NA	NA	NA	NA
WP_077703112.1\|2993783_2994245_+	hypothetical protein	NA	NA	NA	NA
WP_077703113.1\|2994348_2994807_-\|coat	spore coat protein	NA	NA	NA	NA
WP_077703114.1\|2995280_2995517_+	hypothetical protein	NA	NA	NA	NA
WP_077703115.1\|2995628_2995832_+	hypothetical protein	NA	NA	NA	NA
WP_077703116.1\|2995916_2996177_+	hypothetical protein	NA	NA	NA	NA
WP_101934278.1\|2996222_2996915_-	DUF421 domain-containing protein	NA	NA	NA	NA
WP_077703118.1\|2997399_2997825_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_077703119.1\|2997821_2998340_-	hypothetical protein	NA	NA	NA	NA
WP_077703120.1\|2998473_2999199_-	esterase family protein	NA	NA	NA	NA
WP_077703121.1\|2999328_3001146_-	ABC transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	6.8e-13	30.5
WP_077703122.1\|3001135_3002872_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	3.4e-46	29.9
WP_077703123.1\|3003176_3004235_+	malate permease	NA	NA	NA	NA
WP_077703124.1\|3004260_3005274_+	lactate dehydrogenase	M1I0I9	Paramecium_bursaria_Chlorella_virus	1.1e-39	35.0
WP_077703125.1\|3005553_3006609_+	malate permease	NA	NA	NA	NA
WP_101933700.1\|3006695_3007721_+	lactate dehydrogenase	A0A1B1IVB5	uncultured_Mediterranean_phage	2.6e-22	31.7
WP_077703127.1\|3007939_3008662_-	response regulator	NA	NA	NA	NA
WP_101933701.1\|3008639_3010238_-	sensor histidine kinase	NA	NA	NA	NA
3010833:3010883	attL	NA	NA	NA	NA
WP_101933702.1\|3011053_3012049_+\|integrase	tyrosine-type recombinase/integrase	Q83VS6	Escherichia_phage	1.6e-11	30.5
WP_101933703.1\|3012169_3012877_+	hypothetical protein	NA	NA	NA	NA
WP_101933704.1\|3012972_3014022_+\|integrase	tyrosine-type recombinase/integrase	F1BUS9	Erwinia_phage	5.8e-17	28.3
WP_101933705.1\|3014480_3015041_-	recombinase family protein	A0A0A8WIK3	Clostridium_phage	4.6e-45	52.4
WP_101933706.1\|3015388_3015706_+	hypothetical protein	NA	NA	NA	NA
WP_164085498.1\|3016508_3016715_+	hypothetical protein	NA	NA	NA	NA
WP_101933707.1\|3017186_3017414_-	helix-turn-helix transcriptional regulator	A0A2I7SC05	Paenibacillus_phage	6.9e-08	39.4
WP_101933708.1\|3017558_3017888_+	hypothetical protein	NA	NA	NA	NA
WP_101933709.1\|3017881_3018178_+	hypothetical protein	NA	NA	NA	NA
WP_101933710.1\|3018180_3018408_+	hypothetical protein	NA	NA	NA	NA
WP_077703137.1\|3019431_3019665_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_101933711.1\|3019654_3020605_+	hypothetical protein	A0A0A8WF99	Clostridium_phage	4.6e-21	27.9
WP_077703139.1\|3020681_3021044_+	hypothetical protein	NA	NA	NA	NA
WP_164085500.1\|3021506_3021704_+	hypothetical protein	NA	NA	NA	NA
WP_077703142.1\|3021749_3022217_+	hypothetical protein	NA	NA	NA	NA
WP_101933714.1\|3022209_3022887_+	hypothetical protein	NA	NA	NA	NA
WP_101933715.1\|3023076_3023388_+	hypothetical protein	NA	NA	NA	NA
WP_101933716.1\|3023387_3025802_+\|tail	phage tail tape measure protein	J7KDT4	Streptococcus_phage	1.0e-56	37.4
3026993:3027043	attR	NA	NA	NA	NA

DBSCAN-SWA_7

3667405 : 3675489

uncultured_Caudovirales_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_101934294.1\|3667405_3669088_-	STAS domain-containing protein	A0A2H4J153	uncultured_Caudovirales_phage	3.4e-43	27.4
WP_021291310.1\|3669419_3669620_-	cold-shock protein	Q9AZD3	Lactococcus_phage	2.6e-19	64.6
WP_101933913.1\|3669935_3671606_+	formate--tetrahydrofolate ligase	NA	NA	NA	NA
WP_077703705.1\|3671605_3672220_+	HD domain-containing protein	A0A1D6Y7U0	Golden_Marseillevirus	5.1e-13	27.8
WP_077703707.1\|3672223_3672745_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_101933914.1\|3672827_3673835_-	cell wall lytic activity	A0A1V0DZX6	Clostridioides_phage	2.5e-17	37.1
WP_077703712.1\|3674020_3674977_+	thymidylate synthase	A0A0N9SH48	Staphylococcus_phage	5.3e-126	66.6
WP_077703715.1\|3675000_3675489_+	dihydrofolate reductase	G3MBI7	Bacillus_virus	3.4e-36	45.4

DBSCAN-SWA_8

3733369 : 3805011

uncultured_Caudovirales_phage(27.78%)

terminase,holin,tRNA,portal,protease,coat,tail,head,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_101933935.1\|3733369_3734767_+\|transposase	IS5/IS1182 family transposase	A0A146ICT8	Staphylococcus_phage	8.9e-21	36.7
WP_101933936.1\|3734936_3736943_-	transketolase	NA	NA	NA	NA
WP_101933937.1\|3737043_3737277_-	DUF896 domain-containing protein	NA	NA	NA	NA
WP_077703863.1\|3738386_3739010_+	transcriptional repressor LexA	A0A1B2APZ1	Phage_Wrath	1.6e-17	62.3
WP_101933938.1\|3739075_3739894_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_101933939.1\|3740168_3741509_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_101934296.1\|3742781_3743531_+	S8 family serine peptidase	A0A1B0T6A2	Bacillus_phage	9.6e-30	34.4
WP_101934297.1\|3744163_3744370_+	hypothetical protein	NA	NA	NA	NA
WP_101933940.1\|3744379_3744742_+	ABC transporter	NA	NA	NA	NA
WP_101933941.1\|3745004_3745589_-	hypothetical protein	NA	NA	NA	NA
WP_101933942.1\|3745575_3746148_-	hypothetical protein	NA	NA	NA	NA
WP_101933943.1\|3746107_3747373_-	hypothetical protein	NA	NA	NA	NA
WP_101933944.1\|3747548_3748817_-	N-acetylmuramoyl-L-alanine amidase	A0A2P1JU23	Anoxybacillus_phage	1.3e-55	53.8
WP_101933945.1\|3748887_3749685_-	N-acetylmuramoyl-L-alanine amidase	J9PV86	Bacillus_phage	1.5e-36	42.0
WP_101933946.1\|3749760_3750024_-\|holin	phage holin	A0A1Q1PW49	Staphylococcus_phage	2.7e-19	50.6
WP_101933947.1\|3750093_3750375_-	hypothetical protein	NA	NA	NA	NA
WP_101933948.1\|3750410_3750635_-	hypothetical protein	NA	NA	NA	NA
WP_164085527.1\|3750615_3750792_-	hypothetical protein	NA	NA	NA	NA
WP_101933949.1\|3750792_3753588_-	hypothetical protein	A0A142F1N2	Bacillus_phage	1.1e-99	50.6
WP_101933950.1\|3753599_3755036_-\|tail	phage tail family protein	A0A2H4JH21	uncultured_Caudovirales_phage	2.2e-51	28.8
WP_164085528.1\|3755028_3758907_-\|tail	phage tail tape measure protein	H9A124	Staphylococcus_phage	1.2e-110	50.6
WP_164085529.1\|3758943_3759090_-	hypothetical protein	NA	NA	NA	NA
WP_077704950.1\|3759128_3759491_-	hypothetical protein	A0A2H4JH57	uncultured_Caudovirales_phage	5.1e-13	38.1
WP_101933952.1\|3759536_3760100_-	hypothetical protein	NA	NA	NA	NA
WP_101933953.1\|3760099_3760720_-\|tail	phage tail protein	A0A2H4JCT8	uncultured_Caudovirales_phage	1.4e-55	55.5
WP_101933954.1\|3760751_3761135_-	DUF3168 domain-containing protein	A8ATA3	Listeria_phage	1.1e-16	40.3
WP_101933955.1\|3761134_3761527_-	hypothetical protein	A0A2H4JA97	uncultured_Caudovirales_phage	1.8e-32	52.7
WP_101933956.1\|3761523_3761901_-\|head,tail	phage head-tail adapter protein	A8ATA1	Listeria_phage	1.4e-24	47.4
WP_101934298.1\|3761878_3762145_-	hypothetical protein	A0A059T7R0	Listeria_phage	2.1e-19	56.5
WP_101934299.1\|3763339_3764080_-\|protease	Clp protease ClpP	D2XR17	Bacillus_phage	2.9e-71	63.5
WP_101932320.1\|3764106_3765249_-\|portal	phage portal protein	A0A2H4JBZ5	uncultured_Caudovirales_phage	1.5e-119	54.8
WP_101933957.1\|3765253_3766924_-\|terminase	terminase large subunit	D2XR15	Bacillus_phage	7.7e-213	64.7
WP_077704973.1\|3766920_3767223_-\|terminase	terminase	A0A0U4B062	Bacillus_phage	2.1e-28	68.6
WP_164085530.1\|3767332_3767485_-	hypothetical protein	NA	NA	NA	NA
WP_101933958.1\|3767489_3767840_-	HNH endonuclease	A0A0U4JWW4	Bacillus_phage	3.9e-26	56.6
WP_101933960.1\|3768106_3768703_-	hypothetical protein	NA	NA	NA	NA
WP_101933961.1\|3768823_3769273_-	hypothetical protein	NA	NA	NA	NA
WP_073010707.1\|3769429_3769633_-	hypothetical protein	NA	NA	NA	NA
WP_101933962.1\|3769689_3770349_-	hypothetical protein	NA	NA	NA	NA
WP_101933963.1\|3770625_3771021_-	sigma-70 family RNA polymerase sigma factor	A0A288WG73	Bacillus_phage	1.1e-37	56.5
WP_164085531.1\|3771035_3771212_-	hypothetical protein	NA	NA	NA	NA
WP_101933964.1\|3771547_3773404_-	DNA primase	A0A2H4J1M0	uncultured_Caudovirales_phage	6.4e-59	27.5
WP_101933965.1\|3773443_3773746_-	hypothetical protein	L7TJ47	Halovirus	1.8e-16	47.5
WP_101933966.1\|3773742_3774087_-	hypothetical protein	NA	NA	NA	NA
WP_101933967.1\|3774112_3775837_-	DNA polymerase B	A0A2H4J041	uncultured_Caudovirales_phage	4.2e-65	32.3
WP_101933968.1\|3775854_3776298_-	hypothetical protein	NA	NA	NA	NA
WP_164085532.1\|3776297_3776438_-	hypothetical protein	NA	NA	NA	NA
WP_101933969.1\|3776441_3777359_-	AAA family ATPase	A0A141DZQ7	Streptococcus_phage	2.3e-49	46.0
WP_101933970.1\|3777524_3777854_-	hypothetical protein	NA	NA	NA	NA
WP_101933971.1\|3777854_3778754_-	endonuclease	D2IYT8	Enterococcus_phage	1.1e-08	23.3
WP_101934300.1\|3778750_3779950_-	DEAD/DEAH box helicase	A0A2L1IWF6	Streptomyces_phage	3.5e-18	23.8
WP_101933972.1\|3779939_3780236_-	VRR-NUC domain-containing protein	A0A2H4J095	uncultured_Caudovirales_phage	2.1e-09	39.1
WP_101933973.1\|3780232_3780649_-	hypothetical protein	NA	NA	NA	NA
WP_101933974.1\|3780737_3781040_-	hypothetical protein	NA	NA	NA	NA
WP_164085533.1\|3781521_3781686_-	hypothetical protein	NA	NA	NA	NA
WP_101933976.1\|3781692_3781989_-	hypothetical protein	NA	NA	NA	NA
WP_101933977.1\|3782088_3782349_-	hypothetical protein	NA	NA	NA	NA
WP_101933978.1\|3782411_3782720_+	hypothetical protein	A0A2H4JHE6	uncultured_Caudovirales_phage	2.1e-15	50.0
WP_101933979.1\|3782700_3782934_-	hypothetical protein	NA	NA	NA	NA
WP_164085534.1\|3783342_3783504_-	hypothetical protein	NA	NA	NA	NA
WP_101933980.1\|3783565_3783823_-	helix-turn-helix transcriptional regulator	Q8SBM9	Clostridium_phage	1.3e-15	64.8
WP_101933981.1\|3784011_3784659_+	LexA family transcriptional regulator	A0A2I7SCV6	Paenibacillus_phage	7.2e-42	46.1
WP_101933982.1\|3784725_3786156_+	recombinase family protein	A0A2H4J3Q1	uncultured_Caudovirales_phage	3.0e-48	28.4
WP_101933983.1\|3786152_3786548_-\|coat	spore coat protein CotJC	NA	NA	NA	NA
WP_077706897.1\|3786587_3786839_-\|coat	spore coat protein CotJB	NA	NA	NA	NA
WP_077703878.1\|3786843_3787071_-\|coat	spore coat associated protein CotJA	NA	NA	NA	NA
WP_077703881.1\|3787264_3787504_-	hypothetical protein	NA	NA	NA	NA
WP_077703884.1\|3789363_3790701_-	type I glutamate--ammonia ligase	NA	NA	NA	NA
WP_073004905.1\|3791055_3791484_-	MerR family transcriptional regulator	Q9EYF2	Enterobacteria_phage	3.2e-06	35.6
WP_101933984.1\|3791685_3792924_-	methionine gamma-lyase family protein	NA	NA	NA	NA
WP_101933985.1\|3792928_3794161_-	GTPase HflX	NA	NA	NA	NA
WP_077703895.1\|3794493_3795420_-	AAA family ATPase	G3MAX6	Bacillus_virus	1.4e-46	40.7
WP_073004912.1\|3795631_3795856_-	RNA chaperone Hfq	NA	NA	NA	NA
WP_101933986.1\|3795899_3796832_-\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_077706898.1\|3796856_3797303_-	DNA starvation/stationary phase protection protein	NA	NA	NA	NA
WP_101933987.1\|3797362_3799273_-	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	9.8e-71	31.0
WP_101933988.1\|3799363_3801955_-	DNA mismatch repair protein MutS	E5RUN9	Heterocapsa_circularisquama_DNA_virus	1.1e-37	23.7
WP_077703907.1\|3802193_3802757_-\|coat	outer spore coat protein CotE	NA	NA	NA	NA
WP_077703909.1\|3803002_3803431_-	hypothetical protein	NA	NA	NA	NA
WP_101933989.1\|3803433_3805011_-\|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	NA	NA	NA	NA

DBSCAN-SWA_9

4251162 : 4261950

Paenibacillus_phage(57.14%)

tail,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_101934158.1\|4251162_4252254_-	hypothetical protein	D6QWN1	uncultured_phage	3.4e-44	54.5
WP_101934310.1\|4252309_4252741_-\|holin	phage holin family protein	R9TMD4	Paenibacillus_phage	2.6e-19	36.9
WP_101934159.1\|4253014_4253701_-	hypothetical protein	D2XR29	Bacillus_phage	6.3e-28	34.6
WP_101934160.1\|4253811_4254738_-	hypothetical protein	NA	NA	NA	NA
WP_101934311.1\|4254839_4255946_-	hypothetical protein	A0A0K2CZQ1	Paenibacillus_phage	5.1e-88	42.7
WP_101934161.1\|4255947_4257222_-	hypothetical protein	A0A0C5ABC3	Paenibacillus_phage	1.3e-66	67.0
WP_101934162.1\|4257225_4258077_-\|tail	phage tail family protein	A0A0K2CZA8	Paenibacillus_phage	1.2e-65	46.2
WP_164085543.1\|4258083_4261950_-\|tail	phage tail tape measure protein	H9A124	Staphylococcus_phage	8.8e-111	50.6

Anti-CRISPR protein detection

Acr_ID: NZ_CP018622.1|WP_101932345.1|24279_24561_-|group-specific-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP018622.1|WP_101932345.1|24279_24561_-|group-specific-protein

24279_24561_-

93 aa aa

HTH_XRE

Identity	Hit_domain_coverage
0.47368421052631576	0.9655172413793104

272-30133

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP018622_2	Orphan	2.1\|528382\|32\|NZ_CP018622\|CRISPRCasFinder	528382-528413	32	16006-15975	1
NZ_CP018622_2	Orphan	2.4\|528385\|31\|NZ_CP018622\|CRT	528385-528415	31	16003-15973	1

1. spacer 2.1|528382|32|NZ_CP018622|CRISPRCasFinder matches to NZ_CP018622 position: 16006-15975, mismatch: 1

agcaggctataaatctatcatgcatatacacg	CRISPR spacer
agcaggctatgaatctatcatgcatatacacg	Protospacer
**********.*********************

2. spacer 2.4|528385|31|NZ_CP018622|CRT matches to NZ_CP018622 position: 16003-15973, mismatch: 1

aggctataaatctatcatgcatatacacgat	CRISPR spacer
aggctatgaatctatcatgcatatacacgat	Protospacer
*******.***********************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP018622

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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