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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP021386 Bifidobacterium breve strain NRBB04 chromosome, complete genome 4 crisprs cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5 0 12 0 0

Results visualization

1. NZ_CP021386
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021386_1 1635313-1636091 TypeI NA:I-C
11 spacers
cas2,cas1,cas4,cas7,cas8c

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021386_2 1643724-1645717 TypeI I-C
29 spacers
cas2,cas1,cas4,cas7,cas8c,cas5,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021386_3 2064436-2064582 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021386_4 2209657-2209733 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP021386_2 2.25|1645378|35|NZ_CP021386|PILER-CR,CRISPRCasFinder,CRT 1645378-1645412 35 NZ_KM406416 Bifidobacterium breve strain JCM 7017 plasmid megaplasmid pMP7017, complete sequence 124635-124669 0 1.0
NZ_CP021386_1 1.9|1635892|33|NZ_CP021386|CRISPRCasFinder,CRT 1635892-1635924 33 NZ_KM406416 Bifidobacterium breve strain JCM 7017 plasmid megaplasmid pMP7017, complete sequence 171031-171063 2 0.939
NZ_CP021386_2 2.10|1644364|35|NZ_CP021386|PILER-CR,CRISPRCasFinder,CRT 1644364-1644398 35 NZ_KM406416 Bifidobacterium breve strain JCM 7017 plasmid megaplasmid pMP7017, complete sequence 17872-17906 2 0.943
NZ_CP021386_1 1.20|1635892|38|NZ_CP021386|PILER-CR 1635892-1635929 38 NZ_KM406416 Bifidobacterium breve strain JCM 7017 plasmid megaplasmid pMP7017, complete sequence 171026-171063 6 0.842
NZ_CP021386_1 1.8|1635826|33|NZ_CP021386|CRISPRCasFinder,CRT 1635826-1635858 33 NZ_CP046475 Janibacter melonis strain M714 plasmid unnamed, complete sequence 54374-54406 8 0.758
NZ_CP021386_1 1.9|1635892|33|NZ_CP021386|CRISPRCasFinder,CRT 1635892-1635924 33 NC_013856 Azospirillum sp. B510 plasmid pAB510b, complete sequence 123793-123825 8 0.758
NZ_CP021386_2 2.6|1644095|35|NZ_CP021386|PILER-CR,CRISPRCasFinder,CRT 1644095-1644129 35 NZ_CP011666 Streptomyces sp. Mg1 plasmid pSMg1-2, complete sequence 78012-78046 8 0.771
NZ_CP021386_2 2.10|1644364|35|NZ_CP021386|PILER-CR,CRISPRCasFinder,CRT 1644364-1644398 35 NZ_LR134468 Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 26, complete sequence 67952-67986 8 0.771
NZ_CP021386_2 2.16|1644771|35|NZ_CP021386|PILER-CR,CRISPRCasFinder,CRT 1644771-1644805 35 NC_012520 Rhodococcus opacus B4 plasmid pROB01, complete sequence 310923-310957 8 0.771
NZ_CP021386_1 1.8|1635826|33|NZ_CP021386|CRISPRCasFinder,CRT 1635826-1635858 33 NZ_CP017759 Cupriavidus necator strain NH9 plasmid pENH92, complete sequence 185635-185667 9 0.727
NZ_CP021386_1 1.8|1635826|33|NZ_CP021386|CRISPRCasFinder,CRT 1635826-1635858 33 MT822286 Erwinia phage pEp_SNUABM_10, complete genome 5500-5532 9 0.727
NZ_CP021386_1 1.8|1635826|33|NZ_CP021386|CRISPRCasFinder,CRT 1635826-1635858 33 MT822284 Erwinia phage pEp_SNUABM_03, complete genome 3320-3352 9 0.727
NZ_CP021386_1 1.8|1635826|33|NZ_CP021386|CRISPRCasFinder,CRT 1635826-1635858 33 MT822287 Erwinia phage pEp_SNUABM_11, complete genome 5499-5531 9 0.727
NZ_CP021386_1 1.8|1635826|33|NZ_CP021386|CRISPRCasFinder,CRT 1635826-1635858 33 MN184885 Erwinia phage pEp_SNUABM_09, complete genome 5507-5539 9 0.727
NZ_CP021386_1 1.8|1635826|33|NZ_CP021386|CRISPRCasFinder,CRT 1635826-1635858 33 MT822285 Erwinia phage pEp_SNUABM_04, complete genome 5503-5535 9 0.727
NZ_CP021386_1 1.10|1635958|34|NZ_CP021386|CRISPRCasFinder,CRT 1635958-1635991 34 MK448400 Streptococcus satellite phage Javan285, complete genome 2128-2161 10 0.706
NZ_CP021386_1 1.10|1635958|34|NZ_CP021386|CRISPRCasFinder,CRT 1635958-1635991 34 MK448485 Streptococcus satellite phage Javan417, complete genome 2056-2089 10 0.706
NZ_CP021386_1 1.11|1636025|34|NZ_CP021386|CRISPRCasFinder,CRT 1636025-1636058 34 MK448400 Streptococcus satellite phage Javan285, complete genome 2128-2161 10 0.706
NZ_CP021386_1 1.11|1636025|34|NZ_CP021386|CRISPRCasFinder,CRT 1636025-1636058 34 MK448485 Streptococcus satellite phage Javan417, complete genome 2056-2089 10 0.706
NZ_CP021386_2 2.3|1643892|34|NZ_CP021386|PILER-CR,CRISPRCasFinder,CRT 1643892-1643925 34 NZ_CP040722 Rhodococcus pyridinivorans strain YF3 plasmid unnamed3, complete sequence 84330-84363 10 0.706
NZ_CP021386_2 2.3|1643892|34|NZ_CP021386|PILER-CR,CRISPRCasFinder,CRT 1643892-1643925 34 NZ_CP016821 Rhodococcus sp. p52 plasmid pDF01, complete sequence 44694-44727 10 0.706
NZ_CP021386_2 2.6|1644095|35|NZ_CP021386|PILER-CR,CRISPRCasFinder,CRT 1644095-1644129 35 MG018224 Stenotrophomonas phage DLP4, complete genome 48128-48162 10 0.714
NZ_CP021386_2 2.6|1644095|35|NZ_CP021386|PILER-CR,CRISPRCasFinder,CRT 1644095-1644129 35 KX241618 Xanthomonas phage Xoo-sp2, complete genome 21753-21787 10 0.714
NZ_CP021386_2 2.9|1644297|34|NZ_CP021386|PILER-CR,CRISPRCasFinder,CRT 1644297-1644330 34 NZ_CP030074 Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence 309269-309302 10 0.706
NZ_CP021386_2 2.27|1645515|35|NZ_CP021386|PILER-CR,CRISPRCasFinder,CRT 1645515-1645549 35 NZ_CP040756 Paracoccus sp. 2251 plasmid unnamed9, complete sequence 11698-11732 10 0.714

1. spacer 2.25|1645378|35|NZ_CP021386|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KM406416 (Bifidobacterium breve strain JCM 7017 plasmid megaplasmid pMP7017, complete sequence) position: , mismatch: 0, identity: 1.0

gattatcgccggcgcccatcattccaggatgatgc	CRISPR spacer
gattatcgccggcgcccatcattccaggatgatgc	Protospacer
***********************************

2. spacer 1.9|1635892|33|NZ_CP021386|CRISPRCasFinder,CRT matches to NZ_KM406416 (Bifidobacterium breve strain JCM 7017 plasmid megaplasmid pMP7017, complete sequence) position: , mismatch: 2, identity: 0.939

cgggcgcatcggcacctgggtgtggacgatcat	CRISPR spacer
cgggcgcatcggcacctgggtgtgggcgatcct	Protospacer
*************************.***** *

3. spacer 2.10|1644364|35|NZ_CP021386|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KM406416 (Bifidobacterium breve strain JCM 7017 plasmid megaplasmid pMP7017, complete sequence) position: , mismatch: 2, identity: 0.943

tcggtgaccgtgtacgtgccgtagccgaggccctt	CRISPR spacer
tcgacgaccgtgtacgtgccgtagccgaggccctt	Protospacer
***..******************************

4. spacer 1.20|1635892|38|NZ_CP021386|PILER-CR matches to NZ_KM406416 (Bifidobacterium breve strain JCM 7017 plasmid megaplasmid pMP7017, complete sequence) position: , mismatch: 6, identity: 0.842

cgggcgcatcggcacctgggtgtggacgatcatatttc----	CRISPR spacer
cgggcgcatcggcacctgggtgtgggcgatc----ctcaaga	Protospacer
*************************.*****    .**    

5. spacer 1.8|1635826|33|NZ_CP021386|CRISPRCasFinder,CRT matches to NZ_CP046475 (Janibacter melonis strain M714 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.758

ggacggcaccgacaagcagttcatcgcccgtga	CRISPR spacer
cgccggtaccgagaagcagttcatcgccgaggt	Protospacer
 * ***.***** *************** . * 

6. spacer 1.9|1635892|33|NZ_CP021386|CRISPRCasFinder,CRT matches to NC_013856 (Azospirillum sp. B510 plasmid pAB510b, complete sequence) position: , mismatch: 8, identity: 0.758

cgggcgcatcggcacctgggtgtggacgatcat	CRISPR spacer
ctcgctgatcgtcacctgggtgttgacgatctc	Protospacer
*  **  **** *********** ******* .

7. spacer 2.6|1644095|35|NZ_CP021386|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011666 (Streptomyces sp. Mg1 plasmid pSMg1-2, complete sequence) position: , mismatch: 8, identity: 0.771

tgcagcagcaggtgtccgagttcgtgggctatggt	CRISPR spacer
gccagcggcaggtgtccgaggtcgtgggcgagagc	Protospacer
  ****.************* ******** * .*.

8. spacer 2.10|1644364|35|NZ_CP021386|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134468 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 26, complete sequence) position: , mismatch: 8, identity: 0.771

tcggtgaccgtgtacgtgccgtagccgaggccctt	CRISPR spacer
tcggtgacggtgtacgtgccgtggccctcggactc	Protospacer
******** *************.***   *  **.

9. spacer 2.16|1644771|35|NZ_CP021386|PILER-CR,CRISPRCasFinder,CRT matches to NC_012520 (Rhodococcus opacus B4 plasmid pROB01, complete sequence) position: , mismatch: 8, identity: 0.771

cgaccgtcacagacctgttcgagat-cggcagtcag	CRISPR spacer
cgagcgtcagagacctgttcgagatgcggctcctc-	Protospacer
*** ***** *************** ****  ..  

10. spacer 1.8|1635826|33|NZ_CP021386|CRISPRCasFinder,CRT matches to NZ_CP017759 (Cupriavidus necator strain NH9 plasmid pENH92, complete sequence) position: , mismatch: 9, identity: 0.727

ggacggcaccgacaagcagttcatcgcccgtga	CRISPR spacer
tgaccgcaccgacaagccgttcatcatctgctg	Protospacer
 *** ************ *******..*.*. .

11. spacer 1.8|1635826|33|NZ_CP021386|CRISPRCasFinder,CRT matches to MT822286 (Erwinia phage pEp_SNUABM_10, complete genome) position: , mismatch: 9, identity: 0.727

ggacggcaccgacaagcagttcatcgcccgtga	CRISPR spacer
agacggcaccaacaagaagttcatcctacaggc	Protospacer
.*********.***** ******** . *. * 

12. spacer 1.8|1635826|33|NZ_CP021386|CRISPRCasFinder,CRT matches to MT822284 (Erwinia phage pEp_SNUABM_03, complete genome) position: , mismatch: 9, identity: 0.727

ggacggcaccgacaagcagttcatcgcccgtga	CRISPR spacer
agacggcaccaacaagaagttcatcctacaggc	Protospacer
.*********.***** ******** . *. * 

13. spacer 1.8|1635826|33|NZ_CP021386|CRISPRCasFinder,CRT matches to MT822287 (Erwinia phage pEp_SNUABM_11, complete genome) position: , mismatch: 9, identity: 0.727

ggacggcaccgacaagcagttcatcgcccgtga	CRISPR spacer
agacggcaccaacaagaagttcatcctacaggc	Protospacer
.*********.***** ******** . *. * 

14. spacer 1.8|1635826|33|NZ_CP021386|CRISPRCasFinder,CRT matches to MN184885 (Erwinia phage pEp_SNUABM_09, complete genome) position: , mismatch: 9, identity: 0.727

ggacggcaccgacaagcagttcatcgcccgtga	CRISPR spacer
agacggcaccaacaagaagttcatcctacaggc	Protospacer
.*********.***** ******** . *. * 

15. spacer 1.8|1635826|33|NZ_CP021386|CRISPRCasFinder,CRT matches to MT822285 (Erwinia phage pEp_SNUABM_04, complete genome) position: , mismatch: 9, identity: 0.727

ggacggcaccgacaagcagttcatcgcccgtga	CRISPR spacer
agacggcaccaacaagaagttcatcctacaggc	Protospacer
.*********.***** ******** . *. * 

16. spacer 1.10|1635958|34|NZ_CP021386|CRISPRCasFinder,CRT matches to MK448400 (Streptococcus satellite phage Javan285, complete genome) position: , mismatch: 10, identity: 0.706

gcacggtcgaaccccaatagaggttttctttttt	CRISPR spacer
tcttgcaataaccccaattgaggatttctttttc	Protospacer
 * .*    ********* **** *********.

17. spacer 1.10|1635958|34|NZ_CP021386|CRISPRCasFinder,CRT matches to MK448485 (Streptococcus satellite phage Javan417, complete genome) position: , mismatch: 10, identity: 0.706

gcacggtcgaaccccaatagaggttttctttttt	CRISPR spacer
tcttgcaataaccccaattgaggatttctttttc	Protospacer
 * .*    ********* **** *********.

18. spacer 1.11|1636025|34|NZ_CP021386|CRISPRCasFinder,CRT matches to MK448400 (Streptococcus satellite phage Javan285, complete genome) position: , mismatch: 10, identity: 0.706

gcacggtcgaaccccaatagaggttttctttttt	CRISPR spacer
tcttgcaataaccccaattgaggatttctttttc	Protospacer
 * .*    ********* **** *********.

19. spacer 1.11|1636025|34|NZ_CP021386|CRISPRCasFinder,CRT matches to MK448485 (Streptococcus satellite phage Javan417, complete genome) position: , mismatch: 10, identity: 0.706

gcacggtcgaaccccaatagaggttttctttttt	CRISPR spacer
tcttgcaataaccccaattgaggatttctttttc	Protospacer
 * .*    ********* **** *********.

20. spacer 2.3|1643892|34|NZ_CP021386|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040722 (Rhodococcus pyridinivorans strain YF3 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.706

cgcagaccctcggcgacttctacgtcaagtccct	CRISPR spacer
gccagaccctcggccagttctacgtcaccgtcgg	Protospacer
  ************ * **********   .*  

21. spacer 2.3|1643892|34|NZ_CP021386|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016821 (Rhodococcus sp. p52 plasmid pDF01, complete sequence) position: , mismatch: 10, identity: 0.706

cgcagaccctcggcgacttctacgtcaagtccct	CRISPR spacer
gccagaccctcggccagttctacgtcaccgtcgg	Protospacer
  ************ * **********   .*  

22. spacer 2.6|1644095|35|NZ_CP021386|PILER-CR,CRISPRCasFinder,CRT matches to MG018224 (Stenotrophomonas phage DLP4, complete genome) position: , mismatch: 10, identity: 0.714

tgcagcagcaggtgtccgagttcgtgggctatggt	CRISPR spacer
ttgtgcagcaggtggccgagctcgtgggccgcgac	Protospacer
*   ********** *****.********...*..

23. spacer 2.6|1644095|35|NZ_CP021386|PILER-CR,CRISPRCasFinder,CRT matches to KX241618 (Xanthomonas phage Xoo-sp2, complete genome) position: , mismatch: 10, identity: 0.714

tgcagcagcaggtgtccgagttcgtgggctatggt	CRISPR spacer
ttgtgcagcaggtggccgagctcgtgggcggcaat	Protospacer
*   ********** *****.******** ....*

24. spacer 2.9|1644297|34|NZ_CP021386|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030074 (Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

cggcgctgtgttcctcatgcgtggccttgttgtt	CRISPR spacer
gggcgctgtgttcgtcatgcggggcaccgtaaaa	Protospacer
 ************ ******* *** ..** .  

25. spacer 2.27|1645515|35|NZ_CP021386|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040756 (Paracoccus sp. 2251 plasmid unnamed9, complete sequence) position: , mismatch: 10, identity: 0.714

tgcacgtcaagcgccgacttgacttcgggcgaaca	CRISPR spacer
gctgcgtccagcgccgccttgacttcgggcagaag	Protospacer
  ..**** ******* *************..* .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage