CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP024958	Lactococcus lactis subsp. lactis strain G423 chromosome, complete genome	4 crisprs	cas3,DEDDh,csa3,DinG	3	1	7	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP024958_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024958_1

1334822-1334920

Orphan

Consensus_repeat	Method
CTATGGATAAAATGCTCGCTTTGGTCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP024958_1

>merge|NZ_CP024958|1|1334822-1334920|CRISPRCasFinder
CTATGGATAAAATGCTCGCTTTGGTCGCTAACGAACGAGAGAATTATCAGTTCCACTGACAATTCTTTTAACTATCGATAAAATGCTCGCTTTGGTCGC

>NZ_CP024958|1|1|1334822-1334920|CRISPRCasFinder
CTATGGATAAAATGCTCGCTTTGGTCGC	TAACGAACGAGAGAATTATCAGTTCCACTGACAATTCTTTTAA
CTATCGATAAAATGCTCGCTTTGGTCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024958.1\|WP_003131084.1\|1326741_1327920_-\|toxic-anion-resistance-protein	unknown	unknown	gnl\|CDD\|377557
NZ_CP024958.1\|WP_017864588.1\|1329950_1330892_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	unknown	unknown	gnl\|CDD\|224131
NZ_CP024958.1\|WP_026138910.1\|1334975_1335911_-\|dihydroorotate-dehydrogenase	unknown	unknown	gnl\|CDD\|235982
NZ_CP024958.1\|WP_017864597.1\|1339417_1340845_-\|glycoside-hydrolase-family-1-protein	unknown	unknown	gnl\|CDD\|225343
NZ_CP024958.1\|WP_026138911.1\|1341388_1342216_-\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP024958.1\|WP_003131089.1\|1331366_1331897_+\|heptaprenyl-diphosphate-synthase-subunit-I	unknown	unknown	gnl\|CDD\|227110
NZ_CP024958.1\|WP_012897960.1\|1330962_1331370_+\|NusG-domain-II-containing-protein	unknown	unknown	gnl\|CDD\|227646
NZ_CP024958.1\|WP_017864595.1\|1338629_1339346_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225099
NZ_CP024958.1\|WP_012897973.1\|1344643_1345570_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|381624
NZ_CP024958.1\|WP_017864586.1\|1325420_1326569_-\|N-acetylglucosamine-6-phosphate-deacetylase	unknown	unknown	gnl\|CDD\|224733
NZ_CP024958.1\|WP_026138912.1\|1342224_1343136_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_CP024958.1\|WP_017864591.1\|1334041_1334755_-\|orotidine-5'-phosphate-decarboxylase	unknown	unknown	gnl\|CDD\|234695
NZ_CP024958.1\|WP_010905895.1\|1328064_1328691_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227252
NZ_CP024958.1\|WP_017864589.1\|1331887_1332847_+\|polyprenyl-synthetase-family-protein	unknown	unknown	gnl\|CDD\|223220
NZ_CP024958.1\|WP_017864593.1\|1335983_1336772_-\|dihydroorotate-dehydrogenase-electron-transfer-subunit	unknown	unknown	gnl\|CDD\|99814
NZ_CP024958.1\|WP_017864590.1\|1332843_1333560_+\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	unknown	unknown	gnl\|CDD\|223434
NZ_CP024958.1\|WP_017864587.1\|1328882_1329908_+\|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|234629
NZ_CP024958.1\|WP_017864600.1\|1343209_1344529_-\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|224567
NZ_CP024958.1\|WP_017864594.1\|1337102_1338467_-\|multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|341046
NZ_CP024958.1\|WP_012897969.1\|1340837_1341392_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274398

Protein	Function_ID	Function_description	E-value
NZ_CP024958.1\|WP_003131084.1\|1326741_1327920_-\|toxic-anion-resistance-protein	gnl\|CDD\|377557	pfam05816, TelA, Toxic anion resistance protein (TelA). This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance and plasmid fertility inhibition.	2.06226e-124
NZ_CP024958.1\|WP_017864588.1\|1329950_1330892_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	gnl\|CDD\|224131	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane].	7.66874e-173
NZ_CP024958.1\|WP_026138910.1\|1334975_1335911_-\|dihydroorotate-dehydrogenase	gnl\|CDD\|235982	PRK07259, PRK07259, dihydroorotate dehydrogenase.	0
NZ_CP024958.1\|WP_017864597.1\|1339417_1340845_-\|glycoside-hydrolase-family-1-protein	gnl\|CDD\|225343	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism].	0
NZ_CP024958.1\|WP_026138911.1\|1341388_1342216_-\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	1.92747e-59
NZ_CP024958.1\|WP_003131089.1\|1331366_1331897_+\|heptaprenyl-diphosphate-synthase-subunit-I	gnl\|CDD\|227110	COG4769, COG4769, Predicted membrane protein [Function unknown].	1.74231e-64
NZ_CP024958.1\|WP_012897960.1\|1330962_1331370_+\|NusG-domain-II-containing-protein	gnl\|CDD\|227646	COG5341, COG5341, Uncharacterized protein conserved in bacteria [Function unknown].	7.84966e-52
NZ_CP024958.1\|WP_017864595.1\|1338629_1339346_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	2.2129e-67
NZ_CP024958.1\|WP_012897973.1\|1344643_1345570_-\|hypothetical-protein	gnl\|CDD\|381624	cd19606, GH113-like, Glycoside hydrolase family 113 beta-mannosidase and similar proteins. Family 113 glycoside hydrolases cleave (1->4)-beta-glycosidic linkages, such as endo-1,4-beta-mannanase. This family also includes TIM-barrel domains found in gene transfer agent proteins.	1.05227e-94
NZ_CP024958.1\|WP_017864586.1\|1325420_1326569_-\|N-acetylglucosamine-6-phosphate-deacetylase	gnl\|CDD\|224733	COG1820, NagA, N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism].	2.16286e-178
NZ_CP024958.1\|WP_026138912.1\|1342224_1343136_-\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	1.92245e-69
NZ_CP024958.1\|WP_017864591.1\|1334041_1334755_-\|orotidine-5'-phosphate-decarboxylase	gnl\|CDD\|234695	PRK00230, PRK00230, orotidine-5'-phosphate decarboxylase.	4.01899e-133
NZ_CP024958.1\|WP_010905895.1\|1328064_1328691_-\|hypothetical-protein	gnl\|CDD\|227252	COG4915, XpaC, 5-bromo-4-chloroindolyl phosphate hydrolysis protein [General function prediction only].	2.19745e-89
NZ_CP024958.1\|WP_017864589.1\|1331887_1332847_+\|polyprenyl-synthetase-family-protein	gnl\|CDD\|223220	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism].	2.98881e-84
NZ_CP024958.1\|WP_017864593.1\|1335983_1336772_-\|dihydroorotate-dehydrogenase-electron-transfer-subunit	gnl\|CDD\|99814	cd06218, DHOD_e_trans, FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.	1.17544e-107
NZ_CP024958.1\|WP_017864590.1\|1332843_1333560_+\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	gnl\|CDD\|223434	COG0357, GidB, Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane].	2.41383e-85
NZ_CP024958.1\|WP_017864587.1\|1328882_1329908_+\|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase	gnl\|CDD\|234629	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase.	1.17107e-179
NZ_CP024958.1\|WP_017864600.1\|1343209_1344529_-\|extracellular-solute-binding-protein	gnl\|CDD\|224567	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism].	6.51438e-33
NZ_CP024958.1\|WP_017864594.1\|1337102_1338467_-\|multidrug-efflux-MFS-transporter	gnl\|CDD\|341046	cd17503, MFS_LmrB_MDR_like, Bacillus subtilis lincomycin resistance protein (LmrB) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This subfamily is composed of multidrug resistance (MDR) transporters including Bacillus subtilis lincomycin resistance protein LmrB, and several proteins from Escherichia coli such as the putative MDR transporters EmrB, MdtD, and YieQ. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. For example, MMR confers resistance to the epoxide antibiotic methylenomycin. This subfamily belongs to the Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters (MMR-like MDR transporter) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.11121e-66
NZ_CP024958.1\|WP_012897969.1\|1340837_1341392_-\|hypothetical-protein	gnl\|CDD\|274398	TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP), E. coli WcaJ, Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes, such as Sinorhizobium ExoY and Lactococcus EpsD, lack the N-terminal domain and are not found by this model.	0.008284

>NZ_CP024958.1|WP_017864591.1|1334041_1334755_-|orotidine-5'-phosphate-decarboxylase
MQENRPVIALDFPEFSDVKDFLEKFDPSEQLYIKLGMELFYTAGPQVVYYVKSLGHSVFLDLKLHDIPNTVESSMRVLARLGVDMVNVHAAGGVEMMVAAKRGLVAGTPVGRQRPKLIAVTQLTSTSEKIMQNDQKIMTSLEESVINYAQKTAQAGLDGVVCSAHEVEKIKAATSKEFICLTPGIRPEGASKGDQKRVMTPKEARTIGSDYIVVGRPITQAKDPVASYHAIKAEWNQ
>NZ_CP024958.1|WP_017864590.1|1332843_1333560_+|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG
MTPDEFLSALAEFDIQLSDKQIKQFERYFELLVEWNEKINLTAITEKNEVYLKHFYDSIAPILYGLITDQPVSILDIGAGAGFPSLPMKIIFPELKVTIIDSLNKRINFLSLLTEELGLENVTLLHGRAEDFGQDTNYRGTFDFVTARAVARLSVLTEFTIPFLKKNGILLSLKAAQFEEELNDAKKAIATLGGKFIKEVAYELPNGDERHIALIEKKKETPKKYPRKAGTPAKNPIK
>NZ_CP024958.1|WP_017864589.1|1331887_1332847_+|polyprenyl-synthetase-family-protein
MDLKNNFWKDYPELEKELVQVQQLMKSHVTIKNSDVKSAIFDIFDAGGKMLRPAYLLLFSGFTDLSENERLALAASVEMMHTATLVHDDVIDHADTRRGVATLSAKYGPEIAVYAGDYLFIAVFRLMSEHSLELSNLTKNIGSIERLLGGELGQLNHHFNLQQTLDDYIENISGKTGELFALSASVAPLISKNNTLTKRAYKIGMNIGISFQIMDDYLDYASTAQTLGKPVLEDIKQGIYSAPVLFALQENNALVSELIKNEKFDEVYDFIKTSDALEKTKALAKSYTLSALNLIDKLPKGKNRELIAEITRKLLERTL
>NZ_CP024958.1|WP_003131089.1|1331366_1331897_+|heptaprenyl-diphosphate-synthase-subunit-I
MNIKEYVYVSLLTAAAVVMGIIESSLPPFFAFAPGAKVGLANLVMIIAVFTLRWRQVWVMQILRLLITALFTGFSVFLYSFAGGILSLLAMYLMKQFGPKLVSMIGISTVGGFFHNFGQLAMASLLAKTTSVMLYLPWLAFFGILAGFAIGIAGNQLITRVKPIQELFIKESKQWT
>NZ_CP024958.1|WP_012897960.1|1330962_1331370_+|NusG-domain-II-containing-protein
MNFFKNTVNFFKSIKTKPLDFVIIFLLFIASFSTLFFFATGSKGAQAELRISGKVIKTFDLNKNQTWTYRDKDGDYNKIQVKNGEIAVVEANCKDQIDVQRGYISKTGETIVCLPHNLVIEVMSGQKDEQVDYKV
>NZ_CP024958.1|WP_017864588.1|1329950_1330892_+|UTP--glucose-1-phosphate-uridylyltransferase-GalU
MKQNAIPTKARKVRKAVIPAAGLGTRFLPATKAIAKEMLPIVDKPTIQFIVEEALKSGIEDILIVTGKAKRPIEDHFDSNIELEQNLLEKGKTELLKLVEETTDINLHFIRQSHPKGLGHAVLQAKAFVGNEPFVVMLGDDLMNITGNETPLTKDLINDYEKTHASTIAVMKVPHDDVDKYGVIDPNGEVSKGLYNVERFVEKPNVDEAPSDLAIIGRYLLTPEIFDVLETQVPGAGNEIQLTDAIERLNKTQRVFAHEFTGKRYDVGDKLGFVETTIEYGLEHPQIGANLKNYIIEKAKELSKDDSKNITKK
>NZ_CP024958.1|WP_017864587.1|1328882_1329908_+|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase
MNPQKIAVLGPGSWGTALSQVLNDNGHEVRIWGNNPEQMAEINEKHTNTRYFKDVVLDEKIKAFDRLDLALEDVDAILFVVPTKVTRLVTKQVAEVLKHKVHILHASKGLEQGTHERISTILEEEIPAQLRGEIVVVSGPSHAEETIVRDITLISAASKDHDEAKYAQSIFSNDYFRLYTNTDVVGVETAGALKNIIAVGAGALHGLGFGDNAKAAIITRGLAEITRLGVAMGAEPLTYSGLSGVGDLIVTGTSIHSRNWRAGDALGRGEKLADIEKNMGMVIEGVSTTKAAFELAQQLDIDMPITETIYKVLYENLDAKTGILDIMRRETRAENEFINNK
>NZ_CP024958.1|WP_010905895.1|1328064_1328691_-|hypothetical-protein
MPVSLFMNHQDMMFGYGHLGIVNVIFGLVLFFLIIKMIIGISFMRKNPDEREEGYKDKGMSKKENIERYHEAGLSDTDIKIFRENLSEAKENIKTWEKLLKKEDDLQVVESVTGGLEASKQTFKYIVQNPQELTKQNEFLYKDLPNMVKLSEKFIEMKKQSVRTEEINRDLDETLLLIKTLSHSISKNYHEILMDDVNVIKHQVDFDK
>NZ_CP024958.1|WP_003131084.1|1326741_1327920_-|toxic-anion-resistance-protein
MDNPILDDLMTNDKVIKEAEQLDEQQKSEIVKMHEKASLAAVEVLSTEELEKAKELSKQLDESSAQSVINYGASAQDKISAFSQSVLNKVQAQDLGEVGSSLTDLMFNLQQANPNELVAENKGIFTKMFGKVKRSIFEVTQKYQKIGAGIDKISAKLNNEQQGLLQDNEMLDKLYDENLNYFKALNVYIAGAELKVQELDTEIIPQARKEAQDSTDNALIVQKVNDLESYKNRLEKRAHDLRLARQLTIQQAPQIRLIQNTNQELAEKIQTSINTAIPLWKNQVAIALTLLKQKDALTSQRIVSETTNDLLRKNSEMLKASTIEAATENERGLVDIETLKLTQQNLVDTIQETMRIQAEGRQKRQQGEVELSKMEEEIKEKLLQLSNNKQLN
>NZ_CP024958.1|WP_017864586.1|1325420_1326569_-|N-acetylglucosamine-6-phosphate-deacetylase
MTYYIKADQFFYAYETKKGGFLEITDGKFGEWTEEAPAGADILDYSGQSIAPGLVETHIHGFGGADAQDAEVEGIMGTMSEGLLSAGVTSFLPSPLTDDHEGLKAVCTVVGEHYQEARGAKVRGIFFEGPFFTEEKKGAQNPKYMRDAKMWEVEDWQEAAHGMLKKIGLAPERDGSEDFIRKATESGVVIALGHSNATYKQAVAGVQAGASVWVHTFNGMSGMTHQEPGMVGAILNTPNTYAELICDGHHVRPEAAEIVMKMKGADHVVLITDSMRAAGLPDGPYMLGEYEVEVRDGAAWLPTGRPAASILTLKTAVKNVIDWGIATPAEAIMMASLTPAKSVNIDDVCGQIKPGLSADFIVLDNDFDLVATYLDGEKRYEA
>NZ_CP024958.1|WP_026138910.1|1334975_1335911_-|dihydroorotate-dehydrogenase
MTENNRLSVKLPGLDLKNPIIPASGCFGFGEEYAKYYDLNKLGSIMVKATTLHPRFGNPTPRVAETASGMLNAIGLQNPGLEVIMAEKLPWLNENFPDLPIIANVAGSEEDDYVAVCAKIGDAPNVKAIELNISCPNVKHGGQAFGTDPDVAAALVKACKAVSKVPLYVKLSPNVTDIVPIAKAVEHACADGLTMINTLMGVRFDLKTRKPVLANITGGLSGPAIKPVALKLIHQVAQVVDIPIIGMGGVESAQDVLEMYMAGASAVAVGTANFADPFVCPKIIEKLPEVMDQYGIDSLENLIQEVKNSKK
>NZ_CP024958.1|WP_017864593.1|1335983_1336772_-|dihydroorotate-dehydrogenase-electron-transfer-subunit
MPKLQEMMTIVSQREVASNIFEMVLKGELVEEMDLPGQFLHLAVPNANMLLRRPISISSWDKVAKTCTILYRIGDETSGTYEISKLQTGAKIDVMGPLGNGFPVDEVVSTDKILIVGGGIGVPPLYELAKQLEEKNCQMTILLGFASEKVKILEKEFAELKNVSLKIATDDGSYGTKGHVGMLMEEVDFEVDALYTCGAPAMLKAVAKKYDQLERLYISMESRMACGIGACYACIEHDKEDENHALKVCEDGPVFLGKQLSL
>NZ_CP024958.1|WP_017864594.1|1337102_1338467_-|multidrug-efflux-MFS-transporter
MNKNNHFHLLGAVIATGILSFSGVLIETAMNVTFPTLINEFGLSTSKIQWVTTIYLLVIAITIPLSSYFNERFSARKLFLVANLIFLVGVLTNCFSPNFAMLLFGRLLQGVGTGIGLPLMFHLILTKAPLHKRGMMMGIGTLTTSIAPAIGPTYGGIISNSLDWRYIYIFLLPLVVISLVLGLACLPREVAKTPKKLALRPVIALSIMFFAFISALSAEHLMTFALLFIVGLVGAFLFVRFNRKESLIDLGILKNHRFVALIFSLLVYQALLLGLSFVLPSFIQVSAGFSSSVAGLFMFPGALIGAVLAPISGKVLDQIGARKPITTGLILAALGLALLFVFLPTKSLALLLVAHIVLMLGLGISYSNLMTCSLSTLATDQLSDGNALVNTLQQFIGAVATAVVATTLSIFQGLNGFKVGTSHGTSIILALFFILIIVSLIVSFPNLKKIRANH
>NZ_CP024958.1|WP_017864595.1|1338629_1339346_-|GntR-family-transcriptional-regulator
MNKYAKIRNDVRNKIISGKYKPGTLLPKESEMIMKYSASKLTIKKAMDELVNEGLIVKRRGSGTFVKGLSTEDIEKLKVVNQFQGSSAFFADKVVESRILVFEVVKSEPEIMERLGLSEVSDLYHVVRTRLIDGEPYVIESTYMPVDLIKNLTFEICSGSIYEYIEDELGLTIGSAHRRIEARKGIDEELTELGGEFGDPIVLVSQVGYLSDGRTFEFSTNVHRYDKYAFETVLMHKN
>NZ_CP024958.1|WP_017864597.1|1339417_1340845_-|glycoside-hydrolase-family-1-protein
MTKLIFPKEFWWGAATSGPQTEGRFKKKAANIFDYDFEKFPEHFWQGIGPDMASNFYNDFREDIKLMKKAGLNSVRTSIQWSRLIDDLEEGTVNQDAVDFYNAVIDEFIANGIRPVINLHHFDLPVDLLHKYGGWTNKHVITLYVKFAEQCFKLFSDRVSDWFTHNEPMVVVEGGYLYQFHYPDLVDGKLAVQVAYNLQLASSLAIQKFHEINQNPNGEIGIVLNLSPNYPASEDKKDIAAAHIADLWQNQLFMDASVKGEFPKELVEILTKDKVIWQSTKEELAIIKNNKVDRLGVNYYHPNRAQKPYYSPDSLAIDWLPNKYFANYQMLGARMNVDKGWEIYPRALYEIAKNIQENYDNIPWFVSECGMGVSNEERYLNEEGQIDDDYRIQFIQEHLYWLHQAIEEGSSCFGFHLWTPIDCFSWRNSYRNRYGLISVNIHTQEKTLKKSAYYFKNLAEHSVLELSEEFFDKFN
>NZ_CP024958.1|WP_012897969.1|1340837_1341392_-|hypothetical-protein
MKVSGFIWFVQQVYMIIIASLMFWLNFLLGFVFLGTTFSFKRTFAYIEGTYYDKYHERTKEVKLKFEWSNLILLFTVGVFILASHFPLSNLSTFLILVSLAYFVLTLIYIIFKTYYRLEKFTDVMQKLMRNWTMAIYSLMLIILAIFLTGFNRVWFLFFIPGLFCKMIDISFKHLDKKKVKIND
>NZ_CP024958.1|WP_026138911.1|1341388_1342216_-|carbohydrate-ABC-transporter-permease
MNKKVFHIGDVLKYIPLVLAAIVAVLPLLVVFIGSFKSMTEFTNSGVLTLPKHFSIDNYTKAFTEGNMLTGFKNTVIIFVVSMVGQLLISSSFAYVMNRFEFRLKRLILALFTIAMLIPAITSQVAVFQLVNKLGLVGTRWSVIILYIGTNVIALYIFLQFLQEIPYSLDESALLDGASYFRIFWSIILPNLKAPIVTMVIISGVGVYNDFYNPYLYMPDPSLQVISTALFAFKGSSVVQWPVILAGVMIVIIPILIVFIVLQKYIYNGVTGAVK
>NZ_CP024958.1|WP_026138912.1|1342224_1343136_-|sugar-ABC-transporter-permease
MLEVLILSKLSQKAQKRLIIFSFTIVPIVLLLMFSYYPLVKMVQYSLTDWNGISPSSNYLGFANYEKVFSNPNYFGVFKTSLYYFLSSFPQLGLALLFATILSFKVKFANFWKGILFFPYLLNGVAIGFMFLYFYKTGGTLDSLLHLFGIHHLPLWLGNQSINNISLSFVSIWRYMGFNFLIFLGAIQSVDPEIYEAAEIDGANRWNQFRYIIIPAIRNILFLNIILSVSGSLSVFEVPYIMTGGANGTMTFVIQTVQTAFNYNQVGLASAMAVILLIIVVLVSAAQFILTQDRSDAKKKAGA
>NZ_CP024958.1|WP_017864600.1|1343209_1344529_-|extracellular-solute-binding-protein
MKKRYIFGSLAIMGLAALTLAACGSKTSSSGTGKNIKATITFVNQKTDMHSNGMWKKYIAEFNKEYPNITIKEQALNNYDQTEQTRMSSKNFGDVVAIPAAVAPKDYPNFFSSLGKTKDLEKKYTSLQDRTYKGEQYGLPSEVNANGFVVNWNVFKKAGIDKWPTTTDEFIQDLKTIKAKLPDVTPLYTNYACGWALVDWDFQRSSVAGDPNFDLALAKTDKPFTEGQPMYTIYNTLYTAAKDGLINHDPTTDDWNTSVSQMAKNKVAVMMLATWAVPQVQSQMSSNKDAINVEPFPQTAPDGKTYMLIGGDYNWGVNKNSKNQEAAKDWVNWLVDKSDFAKDNGGMTAMKNQPYPTDLNDAKKNGVVFFEAGSTPADKADLFSNINNGSQVGIGTTQTVKQQIIDSGVGSSKKSFASIMDGLNTAWSQNVKQYNPDKK
>NZ_CP024958.1|WP_012897973.1|1344643_1345570_-|hypothetical-protein
MKAIKAASFGYYAKSGELNNDYAQWSMKTLKERTNINTIVLTIVAEQANAHATSINWQTMPPKDEEVKATIRYAQSLGLDVILKPMINCTDGTWRAYINFFDIDVVCEPKWSDWFAVYTEFQLHYAKIAQECEATMFVVGCELVSSDHREKEWRKLIDDVREIYKGLITYNCDKYQENHLTWWDAVDVISSSGYYPFDQWDKELRRIEKVIKKYDKPFFFCEAGAPSIDGGDLLPNDWTIKGEVNLEAQTRYYKGMLTACAKVDFVLGFGLWDWKAQVYSEDQARFDKDYAFYNKPAEKLIKDYYDKP

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP024958_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024958_2

1568221-1568574

Orphan

Consensus_repeat	Method
GAATCNGACGTTGAATCA	CRT

7 spacers

The CRISPR arrays of NZ_CP024958_2

>merge|NZ_CP024958|2|1568221-1568574|CRT
GAGTCGGACGTTGAATCAGAAATTGAATCGGATGTTGAATCAGACGTTGAATCGGATGTTGAATCAGACATTGAATCAGATATTGAATCGGACGTTGAATCAGACGTTGAATCAAATATTGAATCGGACATTGAATCAGACATTGAATCAGATATTGAATCAGACATTGAATCAGACATTGAATTAGACATTGAATCAGATATTGAATCGGACGTTGAATCGGACGTTGAATCGGACGTTGAATCAGACGTTGAATCGGACGTTGAATCAGACGTTGAATCGGACGTTGAATCAGACGTTGAATCGGACGTTGAATCAGACATTGAATCAGATATTGAATCGGACGTTGAATCA

>NZ_CP024958|2|1|1568221-1568574|CRT
GAGTCGGACGTTGAATCA	GAAATTGAATCGGATGTT
GAATCAGACGTTGAATCG	GATGTTGAATCAGACATTGAATCAGATATTGAATCGGACGTT
GAATCAGACGTTGAATCA	AATATTGAATCGGACATTGAATCAGACATTGAATCAGATATT
GAATCAGACATTGAATCA	GACATTGAATTAGACATTGAATCAGATATTGAATCGGACGTT
GAATCGGACGTTGAATCG	GACGTTGAATCAGACGTT
GAATCGGACGTTGAATCA	GACGTTGAATCGGACGTTGAATCAGACGTT
GAATCGGACGTTGAATCA	GACATTGAATCAGATATT
GAATCGGACGTTGAATCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024958.1\|WP_017864769.1\|1572157_1572955_-\|accessory-Sec-system-protein-Asp3	unknown	unknown	gnl\|CDD\|379726
NZ_CP024958.1\|WP_003130711.1\|1559044_1559317_-\|30S-ribosomal-protein-S16	unknown	unknown	gnl\|CDD\|234588
NZ_CP024958.1\|WP_003130710.1\|1558709_1558949_-\|KH-domain-containing-protein	unknown	unknown	gnl\|CDD\|224750
NZ_CP024958.1\|WP_017864772.1\|1576125_1577352_-\|preprotein-translocase-subunit-SecY	unknown	unknown	gnl\|CDD\|237095
NZ_CP024958.1\|WP_017864775.1\|1580018_1581338_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274351
NZ_CP024958.1\|WP_003130709.1\|1557503_1558448_-\|ferrochelatase	unknown	unknown	gnl\|CDD\|223353
NZ_CP024958.1\|WP_026138923.1\|1560718_1561858_-\|thiolase-family-protein	unknown	unknown	gnl\|CDD\|238383
NZ_CP024958.1\|WP_017864759.1\|1555511_1556471_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|227095
NZ_CP024958.1\|WP_003130708.1\|1556535_1557363_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225176
NZ_CP024958.1\|WP_017864763.1\|1562166_1563321_+\|hydroxymethylglutaryl-CoA-synthase	unknown	unknown	gnl\|CDD\|213655
NZ_CP024958.1\|WP_017864774.1\|1579766_1579973_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024958.1\|WP_017864761.1\|1559405_1560638_-\|hydroxymethylglutaryl-CoA-reductase,-degradative	unknown	unknown	gnl\|CDD\|153082
NZ_CP024958.1\|WP_017864768.1\|1571097_1572177_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236626
NZ_CP024958.1\|WP_026138924.1\|1569499_1570009_-\|sugar-O-acetyltransferase	unknown	unknown	gnl\|CDD\|100047
NZ_CP024958.1\|WP_017864764.1\|1563380_1564088_-\|glucosamine-6-phosphate-deaminase	unknown	unknown	gnl\|CDD\|238693
NZ_CP024958.1\|WP_152415601.1\|1570034_1570877_-\|beta-1,6-galactofuranosyltransferase	unknown	unknown	gnl\|CDD\|236626
NZ_CP024958.1\|WP_017864771.1\|1574542_1576126_-\|accessory-Sec-system-protein-Asp1	unknown	unknown	gnl\|CDD\|274740
NZ_CP024958.1\|WP_017864765.1\|1564239_1565199_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223999
NZ_CP024958.1\|WP_017864773.1\|1577375_1579745_-\|accessory-Sec-system-translocase-SecA2	unknown	unknown	gnl\|CDD\|236408
NZ_CP024958.1\|WP_017864770.1\|1572947_1574564_-\|accessory-Sec-system-protein-Asp2	unknown	unknown	gnl\|CDD\|379903

Protein	Function_ID	Function_description	E-value
NZ_CP024958.1\|WP_017864769.1\|1572157_1572955_-\|accessory-Sec-system-protein-Asp3	gnl\|CDD\|379726	pfam15432, Sec-ASP3, Accessory Sec secretory system ASP3. Sec-ASP3 is family of bacterial proteins involved in the Sec secretory system. The family forms part of the accessory SecA2/SecY2 system specifically required to export GspB, a serine-rich repeat cell-wall glycoprotein adhesin encoded upstream in the same operon.	1.40655e-28
NZ_CP024958.1\|WP_003130711.1\|1559044_1559317_-\|30S-ribosomal-protein-S16	gnl\|CDD\|234588	PRK00040, rpsP, 30S ribosomal protein S16; Reviewed.	8.37228e-46
NZ_CP024958.1\|WP_003130710.1\|1558709_1558949_-\|KH-domain-containing-protein	gnl\|CDD\|224750	COG1837, COG1837, Predicted RNA-binding protein (contains KH domain) [General function prediction only].	2.09931e-25
NZ_CP024958.1\|WP_017864772.1\|1576125_1577352_-\|preprotein-translocase-subunit-SecY	gnl\|CDD\|237095	PRK12417, secY, preprotein translocase subunit SecY; Reviewed.	1.88723e-54
NZ_CP024958.1\|WP_017864775.1\|1580018_1581338_-\|hypothetical-protein	gnl\|CDD\|274351	TIGR02919, conserved_hypothetical_protein, accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. [Protein fate, Protein modification and repair].	3.65795e-91
NZ_CP024958.1\|WP_003130709.1\|1557503_1558448_-\|ferrochelatase	gnl\|CDD\|223353	COG0276, HemH, Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism].	2.85199e-130
NZ_CP024958.1\|WP_026138923.1\|1560718_1561858_-\|thiolase-family-protein	gnl\|CDD\|238383	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.	0
NZ_CP024958.1\|WP_017864759.1\|1555511_1556471_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|227095	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms].	6.87325e-25
NZ_CP024958.1\|WP_003130708.1\|1556535_1557363_-\|alpha/beta-hydrolase	gnl\|CDD\|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	5.16572e-66
NZ_CP024958.1\|WP_017864763.1\|1562166_1563321_+\|hydroxymethylglutaryl-CoA-synthase	gnl\|CDD\|213655	TIGR01835, 3-hydroxy-3-methylglutaryl_CoA_synthase, 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade. This clade of hydroxymethylglutaryl-CoA (HMG-CoA) synthases is found in a limited spectrum of mostly gram-positive bacteria which make isopentenyl pyrophosphate (IPP) via the mevalonate pathway. This pathway is found primarily in eukaryotes and archaea, but the bacterial homologs are distinct, having aparrently diverged after being laterally transferred from an early eukaryote. HMG-CoA synthase is the first step in the pathway and joins acetyl-CoA with acetoacetyl-CoA with the release of one molecule of CoA. The Borellia sequence may have resulted from a separate lateral transfer event.	0
NZ_CP024958.1\|WP_017864761.1\|1559405_1560638_-\|hydroxymethylglutaryl-CoA-reductase,-degradative	gnl\|CDD\|153082	cd00644, HMG-CoA_reductase_classII, Class II hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR). Hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR), class II, prokaryotic enzyme is a homodimer. Class II enzymes are found primarily in prokaryotes and Archaeoglobus fulgidus and are soluble as they lack the membrane region. Enzymes catalyze the synthesis of coenzyme A and mevalonate in isoprenoid synthesis. Bacteria, such as Pseudomonas mevalonii, which rely solely on mevalonate for their carbon source, catalyze the reverse reaction, using an NAD-dependent HMGR to deacetylate mevalonate into 3-hydroxy-3-methylglutaryl-CoA. Human and bacterial HMGR differ in their active site architecture.	0
NZ_CP024958.1\|WP_017864768.1\|1571097_1572177_-\|hypothetical-protein	gnl\|CDD\|236626	PRK09814, PRK09814, sugar transferase.	2.82592e-56
NZ_CP024958.1\|WP_026138924.1\|1569499_1570009_-\|sugar-O-acetyltransferase	gnl\|CDD\|100047	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).	3.32469e-68
NZ_CP024958.1\|WP_017864764.1\|1563380_1564088_-\|glucosamine-6-phosphate-deaminase	gnl\|CDD\|238693	cd01399, GlcN6P_deaminase, GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium. The reaction is an aldo-keto isomerization coupled with an amination or deamination. It is the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate (GlcNAc6P). GlcN6P deaminase is a hexameric enzyme that is allosterically activated by GlcNAc6P.	1.0846e-109
NZ_CP024958.1\|WP_152415601.1\|1570034_1570877_-\|beta-1,6-galactofuranosyltransferase	gnl\|CDD\|236626	PRK09814, PRK09814, sugar transferase.	7.46478e-50
NZ_CP024958.1\|WP_017864771.1\|1574542_1576126_-\|accessory-Sec-system-protein-Asp1	gnl\|CDD\|274740	TIGR03713, acc_sec_asp1, accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	1.06304e-36
NZ_CP024958.1\|WP_017864765.1\|1564239_1565199_-\|alpha/beta-hydrolase	gnl\|CDD\|223999	COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General function prediction only].	5.10356e-30
NZ_CP024958.1\|WP_017864773.1\|1577375_1579745_-\|accessory-Sec-system-translocase-SecA2	gnl\|CDD\|236408	PRK09200, PRK09200, preprotein translocase subunit SecA; Reviewed.	0
NZ_CP024958.1\|WP_017864770.1\|1572947_1574564_-\|accessory-Sec-system-protein-Asp2	gnl\|CDD\|379903	pfam16929, Asp2, Accessory Sec system GspB-transporter. Asp2 is a family of the SecA2/Y2 accessory Sec secretory system of Gram-positive bacteria. It is specific for large serine-rich repeat, cell-wall-anchored, glycoproteins such as GspB. Export of GspB requires the three Asp1-Asp3 proteins. Asp2, in conjunction with Asp3, probably acts as a chaperone in the early stage of GspB transport.	5.80066e-162

>NZ_CP024958.1|WP_017864765.1|1564239_1565199_-|alpha/beta-hydrolase
MKKRKKIIAWILVVLSVVLVGGYFAIGNYFYDLAVNAHTNKSFLTAGSKQKPLSKKEERKKENKAFLADIKSDAWYVTSSDKLKLKLYAADYKQPTKTNKWAIVVHGYGGQSTDMASWTRHFYNKNYNVVTPDLRGHGKSQGDYIGMGWDDRKDMLLWIAKIIQKDPQAEIVLLGVSMGGATVMNTSGEKLPSSVKAIVEDCGFTSTGDVFAYQLKQLYGLPKFPVLYAANTVVKIRAGYDIFKSSTIKQVAKSKIPILFIHGDKDTFVPFKMLNPLYDAAKVDKEKLIVHGAGHGESEKVNPDLYWSHVWDFVGKYMS
>NZ_CP024958.1|WP_017864764.1|1563380_1564088_-|glucosamine-6-phosphate-deaminase
MKVIVVKNQLEGGKIGLDLLKEAMANGAKTLGLATGSTPVEFYNQIVNSDLDFTDMVSVNLDEYVGLDGSNDQSYRYFMTKHLFGEKPFKENFLPNGKAADLEAEAKHYDQIIEENPIDWQILGIGQNGHIGFNEPGTPAEITTHVVDLQESTIKANARFFESEADVPRKAISMGLASIMKSKNIVLMAYGKEKAEAIKGMVEGEVTTELPASILQNHANVTVIADEAAVSLLSK
>NZ_CP024958.1|WP_017864763.1|1562166_1563321_+|hydroxymethylglutaryl-CoA-synthase
MKVGIDKLGFFVPNTFVDMRDLANARNVDPAKFQIGIGQDEMAVNPATQDIITFAANAAASILTEEDKKAIDMVIVGTESSLDESKASAVVVHDLLGIQPFARSIEMKEACYATTAGLALARDHVLLNPDTKVLVIASDIAKYGLNTGGEPTQGAGSVAMLITADPKILALNNDNVALTQDIYDFWRPFGQAYPSVDGKFSNETYIDAFAKIWKEYSHRTNLKFEDFAAIAFHTPYTKMGKKALLPMLESEKPANAEELMEQFERGIVYNRRVGNLYTGSLYLSLISLLENSDKLSAGQRIGLFSYGSGTVAEFFSGELVEGYENHLLKIEHQSMLDARTRLSIPEYENMFNQYLDLNHNISFNDETDYSVSEVVDNHRKYKKR
>NZ_CP024958.1|WP_026138923.1|1560718_1561858_-|thiolase-family-protein
MKEIVIIDALRTPVGRYDGALAEYSAAELGTHVVSNLLSKHENIKSDVEQVIFGNVLQAGNGQNIARQIAIHSGLSNTVPASTINEVCGSGMKAVILAKQLLQLGEAEVVIAGGTESMSNAPIIKNRKTQEETLSMLNDGLVDAFSGISMGIIGETIAEQFDISRADQDAFAQNSQEKAVAASQAGIFKEEIVAIGEVGVDETPRTSSSLEKLATLRTAFKENGTVTAGNSSPVNDGASAVILATKDYAEKHGISYLAELVDSTEVGIDPAIMGVSPIEAIKKLINRSELELSDIDLFEINEAFAASSLAVNRELGLNESQVNIYGGAIALGHAIGSSGSKILTTLSYALKREQKRYGIASLCIGGGLGLAVLLKNPNL
>NZ_CP024958.1|WP_017864761.1|1559405_1560638_-|hydroxymethylglutaryl-CoA-reductase,-degradative
MRKKFYQMSPKERLDSLNLSEDTQEVLSEMALDTNILNNLIENQISEFELPMGLAQNFVINGKEYIVPMVTEEPSVIAAASNGAKIAESFTAKIDERLMRGQIVFYDVKKPEEIIKKISECKNEIFEQAKLSYPSIIKRGGGLREISSRLFSSEKFISVDFKVDVKDAMGANIINSILEGVAELFRGWFSEEKILFSILSNYATESLVKVSCEIPVDALSKKSNGLEIAQKIAVASQYSKIDPYRASTHNKGIMNGINAVILATGNDTRAISAAIHAYAAKEGTYQGLAKWEVHAEKLFGELEIPLPVATVGGGVKVLPKAQAAMEILGITDARELAKVIAAVGLAQNLAALRALVSEGIQQGHMSLQARSLALSVGAKADEIAVISQQLRQEKVMNQEVARRLLNSLRN
>NZ_CP024958.1|WP_003130711.1|1559044_1559317_-|30S-ribosomal-protein-S16
MSVKIRLTRMGSKKKPFYRINVADSRAPRDGKFIETVGTYNPLVTEEQVTLKEERVLEWLSKGAQPSDTVRNLLSKAGVMKKFHESKLSK
>NZ_CP024958.1|WP_003130710.1|1558709_1558949_-|KH-domain-containing-protein
MQKDVKELVLTIVKPLVTQPDEVSLELIEGEEFMEYHLKVAEGDIGRIIGRQGRIIQAIRTVVYFVPVEGKKVRLLVDQ
>NZ_CP024958.1|WP_003130709.1|1557503_1558448_-|ferrochelatase
MDKKKGILLVALGTPRSCEADDVRDYLKEFLGDPLVIQKPRWLWLPILNGIILKVRPQKSAEMYKKIWTDEGSPLMIYTVAQAKQLQDMREDFDVRFAMTYGEPRIDKVIAEMKESGVEEITVLPLYPQYSLTTVEPVIQQVKKIDDKIKVIRDFHKVESYSDLLAESIREKWQANDYDKLVLSYHGIPLSYVTKKKDAYEEQCKETTRLVVSKLGLREEEYEHTYQSKFGPEKWLEPATIDRVAELPKENAKKVLICSPAFVADCLETLFELEIENKEVFVENGGETFDFVHPFNDSLDFTRVLSEVVDQNRL
>NZ_CP024958.1|WP_003130708.1|1556535_1557363_-|alpha/beta-hydrolase
MKDHYRIRLGIFEPDQKAKAVVQLVHGFGEYTGHYLYLINELVNAGFVCLMHDQRGHGVLAAANPKLQGRARAYESLISDVLEVRKIIGKKYPKLPVYLFGHSMGGNISLNVLLRNIENQKLYQKAVIESPWLALTNPPAVPLQRLAGFLGKISPKIRVRTGLKVEAISHRNDLVDLVTKDGIYHELLSLRLFSQIMEAGRFAQSQAGNLKIPTLLFCGESDQICSPVAIRSFANNAGKNLELIEIADGYHALHLDTEAENFIERTKDFFLKENF
>NZ_CP024958.1|WP_017864759.1|1555511_1556471_+|helix-turn-helix-domain-containing-protein
MYKVSREQFTHFWDFLKTLDCYIKSESGMIEELEEFANNLNREIAALVCQNTSGLLTYSAPYIRIIYVLSGKISLSLDNKKSIYQEGSLILANKWTKIDYQELSDETVIIGFYFKPEYFDDSLLSQIIEEPMLYRFFVESIEKDSEQLSHFCIYQFTILEDTHFYALLLLKQVVKMCYFNNKVTKAAFILLIVELSHHSEEYLILKDSNISSSVLIKEILSYIENNIRTASLEELSTKFYFHPNYLSSLIKHQTGLSYSTWLTTYRIKHAKNYLTQTNLSIQEILGKIGYSDKTYFFKLFKTQVGMTPGEYRKQNKIIF
>NZ_CP024958.1|WP_026138924.1|1569499_1570009_-|sugar-O-acetyltransferase
MPIRDEQTRKKNREQLRLLNESSYDREAIIASERALLEIKTEGTVYIDIPFQFDFGTNLHFSGNFYANTDCLFLDTGDINFGKNVKLGPRVQIYTVNHPVDPTERLEKGLAIASPVMIGDNVWIGGGSIINPGVVIGANTVIGSGSVVTRSLPSNVLAAGVPAKVIREI
>NZ_CP024958.1|WP_152415601.1|1570034_1570877_-|beta-1,6-galactofuranosyltransferase
MWTHLNFQAEFFDTIKGIEGVRMVALLHDIPTWMFTKGEEEYDRANDFWLNQLKKFDLLMVANEKGAHKLQEDGVHVPMIPMQFWDYFYQGPRQEKQFKKQLYYVGGRDIIDTTYRASTPLYIYDRHVEQKVLESGSVTWLGRQPSDEIVSRLDGGFGVVVTENLIEKSNMNFVYYNQFNNPTKLSMYLAAGLPVIVSSKTYHASLVKAHGIGLVVDDLNEIDQIFSSMTAADYQKLVDNVKPWQEAISNGFFIQRALFAMLRALELGFSDDLIKEKEVE
>NZ_CP024958.1|WP_017864768.1|1571097_1572177_-|hypothetical-protein
MTNWITEVQDNDYVSKRASGIIANQMAADSIETVGFRKLHYPRMYSGKLQEVGKEARWEYLEAMLSCVLPGDTVIVQYPLWTNNTTFELEFINYLKNVRHAKIVAMVWDIVSWLQDNRERDYTKDASLWMLNKYDLVIAANPKMGKRLREEGGVTTPMIPMHLTDFIYNGPLIPKQYKKELYYVATGIDPAMIEEVPSDLRINFIGPNNQVKDFPDHVSLLGPMESNDIPSKLDGGFGLLYYPQKGGYKGMHRYGEYNNPMKLSLYLASGLPVVCLSNTAHAKWIKAQGVGVVIDNLEDLGEAINGVSEEAYYQMLDNLKPWQRAVTSGFFAKGAAIEAVRVLNLGFTDTLIHQEGNND
>NZ_CP024958.1|WP_017864769.1|1572157_1572955_-|accessory-Sec-system-protein-Asp3
MSELYLMRWPQNLSAVYVNGATIRYSQDQSVYYANEVLSPGQTICTWSSATDYLVSGNSPSLPLLKINRTYELSLRLKADNDLPVQVQIDFLDGHKEVLDSYRGTNPRLVFTVPKGMVSYEVRLVNLKHEWLRFEFISIGEIGAVERIFEVTSRKHYDWVHVRPLRGSNHKTVQLIVNQGPRSILPLSLHESIDMEQIFITTDGQAIEPLIQSLAHTLRNKPETQLSLEAGLGYYHLPSEFIVKFKAGLKQIQKLGGKNNDELDH
>NZ_CP024958.1|WP_017864770.1|1572947_1574564_-|accessory-Sec-system-protein-Asp2
MEGGLKVSEPSKKLFQIGGARLPKLSELVEAYDYHPLDISEGLQAELLRLQALEKDEINNSTDLFLLRKEAMFQLETIDLIRLPSHQIFYETLEGASEAEVSILKLKGAQLVNLTDQGEGFSQFINQNYVKPWGTSLDHRRVEIHPDFEGNVTKKGSSKVILEGIFGLDDFQQVLVWKNNWGGSGRVKFYPEISASGSVSYYFRAYYKNGTTHSGIITHDFSAEQIRAGEVFFDLGFSEFPVNFALFIKGQGKVQVGALHLRYGLSGENFLAMGGKRLVQKGHMGEELGVYFNAGDLKPPLNVYFSGFRPSEGYEGRWMMGSLGSPFLLVYDPRLVGGAFYRGPELEEALVKEIQEKLDLLGFSNKELVLSGLSMGTYASFYYGAQLEPHAIVVGKPLANIGGLAVHSRIFSPYDWDLAMDTLIHLTGTLTKESASALDEAFWKEFESADFSETTFIIAHMLQDTDLPFKRIFNHLKQNYPSAKVLHKGLEGRHNDDTPGVTSWFYKQYQQLLISDFARQLIIDEEESPINLEGENDE
>NZ_CP024958.1|WP_017864771.1|1574542_1576126_-|accessory-Sec-system-protein-Asp1
MLYFLTDWSSESPQLESNILFNINTIFQEGEFETKLINTHFSPFLNYYMNRFESYDSDHFISLMDTVTDRFAFNYAPLTLNDLDFPKDWERTYTRGSVLLSKEGVIKAEVYFNAFGFVSQVHYPTPLGKEIHVYSEKGTLLTQSSFDASGEAIEQRIYDEGGQLILTQRGGVVFIEATYQKRFKKKTYDSFKEVCMELLHLALVNFNPKEDRLVIDGTNDWVMSLIDGIEFPESVVYIFSGPSEPCHSQMAEHLSLIENGKAMITDNLHFQEVIMKGKRALQSELHFMPLFPTALSLGESNNFLEGIVYWQIEAFDSQTSALFEKFLELKLSTPELCLTIESEKATDETKVETQLSHFITKNFEISLSSSEYGLVKQYYEALENEEMTPGLRDLFQANKRENPMFSHVIDAYMFYTGISFKKCGSVEALKLDLQKVRVFIDHRQKYDFLSHSLAVSAGIPILSKTPSPYLVHGKNGLLYEEDKDLVKAVHAYLIDPDLWNQSLVESVEVIENNSAEGLIEKWKEVLK
>NZ_CP024958.1|WP_017864772.1|1576125_1577352_-|preprotein-translocase-subunit-SecY
MKLYNELIKKGCFTLIMLLFFYIGQGIPVPGYSANFRLPGGDFSLEKMLSLTTGGLFSSPTLLALGMGPYMTVSILLSVGLFTNREVASQISQEMRGRLEIIGIFIMALLQSIPLAFNLRNSMISKMNFLSPFAIFLFTILCFVVGALLISWLASLNVIYGLGGPFILILPGIMKGITGSLVANYNSVLIHFERLLPLILATIVFVGVTVAIYFAEYRFDVQRIGIDQYSKEGYLAFRLLIAGSMPLMFATTLMYFPAYLMQLFHYRNEFVLGLFNVRQFSGILTYGLILYLLGILFSFVNIMPDQITKDLKESGDYIVGVTPGEATKKYISKRVWGVSLIGSLFLPLIVTVPLFVGLATGHASISNLSNYFAMIFVLVVIYDNLQQDVKFLLYKNNYELFGTNRRTF
>NZ_CP024958.1|WP_017864773.1|1577375_1579745_-|accessory-Sec-system-translocase-SecA2
MLKMRKYQRLVKKIHQLLPTYRAMTDEALQNQTEVLQTLLSQGKTIENLLPQAFAVIIEADKRVLGLEPYEVQVLGGLALFFGNIAEIKTGEGKTLVATLPLYARALEGKKGNFLITANEYLAERDGQEMGRVFEWLGLSVGIGIGEEDQDIEAKRRLYHSDIIYTTHSKLGFDYLFDNLGSSLSEQVVSEFNFAIIDEIDAILLDGAQTALVISGSPKVQSNYYQICDWFIKSLTSEDYEYSEDKRRVWLTEHGLKKLNAYFNIEDVYGEKYKDFYRHIVLALQANALKKRGKDYVVIDGKVLLLDVVNGRTMPGVKLQGGIHQAIESKEGVEVSKESKTLGTISYQSLFKKFVRLSGMTGTAKTDEKEFMETYHLQVIEIPTHVPTQRKDQNDQIYVTNQTKIEASIKAVKSGIIEKRPVLIETGSVSMSDLYSLVLLENKIPHNLLNARTAAREQQIISGAGRAGAVTLATSMAGRGTDIKLTSEAKSNGGLKVIGTERMNNKRIDNQLRGRAGRQGEPGEAVFYVSLEDKVIIENAPHWVRKRRYSLLHQISKGRRGSTDPVQSKRLNRVMDRAQKKLGNAEVQSRKNTLAFDTILSDQRNRIYEARNKVMAENEAYFEKIIEKALHHVIYTFIYQSDDLSVHTLSDFIFNHLKSDYPLKEIEAHIDSTSPKPVMYDYLFGLAQTLITQSLNRFKDPVQLRYFKKVIILKAIDQAWVNQLDYLQQLKNMVNGRGMAQHKPLNEFGREARRRFFEMEDEIYLGVFRSLALSELKMNEDGTIELEFP
>NZ_CP024958.1|WP_017864774.1|1579766_1579973_-|hypothetical-protein
MMRKHFLKEKIEAGFEDERELLEHEPEKKAKLPALSYVRPIFFTILLTVTLIALAINGWTAIKFFMTH
>NZ_CP024958.1|WP_017864775.1|1580018_1581338_-|hypothetical-protein
MKINIFDRYNENAKKLMHSLATAGMESKSLFVHYNGELPKGGMSPYSFFTKLPEESEEQGLFFDQVIVPKFYAIRHLDGGSAAIEFLQRRVGLIHYRKEGYRLVQTVEWFSKEDSRTIVKRDDYNLVGHHYASTYFSAKGPYQTEYYNLEGKVIVSEDLVHRGIQLNEPSKVHHFENVTQFFLYFMKVAEIQPSEIYINSLSYPLFISRALNIGRQTTLFWQEGMGQEVPGNMKNELEKAVTLKRIIFENEKQLKQVEASFPATSIALGYLSAIGEFKRSNHYRPQAFILTNSDNIYGLQDILGNFPDLQLTVAAYTNMSTKLLHLEEEYPNIQLIPSINEEILQDELEKADIYLDINRGLKVGEILKWAYEQNMLIFSYKEVAQAEAHGLVFEEIRDLCNHLSYLLTDRTNWQKLLTKMVENNGPSSTIQDYQNLLDV

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP024958_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024958_3

1838668-1838762

Orphan

Consensus_repeat	Method
TTTATTACTGACAGACTTGTCAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP024958_3

>merge|NZ_CP024958|3|1838668-1838762|CRISPRCasFinder
TTTATTACTGACAGACTTGTCAGCTTTGCTGACAAATCCTTCATCCATTGATAAAAAGCTCAATTCAATCGCTTTTTACTGACAGACTTGTCAGC

>NZ_CP024958|3|2|1838668-1838762|CRISPRCasFinder
TTTATTACTGACAGACTTGTCAGC	TTTGCTGACAAATCCTTCATCCATTGATAAAAAGCTCAATTCAATCG
CTTTTTACTGACAGACTTGTCAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024958.1\|WP_017864923.1\|1841155_1842412_-\|Fe-S-cluster-assembly-protein-SufD	unknown	unknown	gnl\|CDD\|223791
NZ_CP024958.1\|WP_004255181.1\|1842549_1843320_-\|Fe-S-cluster-assembly-ATPase-SufC	unknown	unknown	gnl\|CDD\|223473
NZ_CP024958.1\|WP_080613267.1\|1834852_1835215_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024958.1\|WP_017864921.1\|1836248_1837094_+\|2-nitropropane-dioxygenase	unknown	unknown	gnl\|CDD\|132195
NZ_CP024958.1\|WP_004255197.1\|1838880_1839339_-\|SUF-system-NifU-family-Fe-S-cluster-assembly-protein	unknown	unknown	gnl\|CDD\|273918
NZ_CP024958.1\|WP_004255171.1\|1845659_1846394_-\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NZ_CP024958.1\|WP_004255207.1\|1837234_1838647_-\|Fe-S-cluster-assembly-protein-SufB	unknown	unknown	gnl\|CDD\|131035
NZ_CP024958.1\|WP_012898347.1\|1830475_1830781_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226801
NZ_CP024958.1\|WP_017864916.1\|1831774_1832344_-\|biotin-transporter-BioY	unknown	unknown	gnl\|CDD\|224187
NZ_CP024958.1\|WP_017864924.1\|1843494_1844826_-\|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase	unknown	unknown	gnl\|CDD\|133463
NZ_CP024958.1\|WP_004255173.1\|1844828_1845530_-\|adaptor-protein-MecA	unknown	unknown	gnl\|CDD\|227199
NZ_CP024958.1\|WP_004255158.1\|1846393_1847080_-\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP024958.1\|WP_080613268.1\|1835479_1836226_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|187594
NZ_CP024958.1\|WP_004255189.1\|1839938_1841156_-\|cysteine-desulfurase	unknown	unknown	gnl\|CDD\|131034
NZ_CP024958.1\|WP_017864915.1\|1830797_1831769_-\|biotin--[acetyl-CoA-carboxylase]-ligase	unknown	unknown	gnl\|CDD\|237010
NZ_CP024958.1\|WP_017864917.1\|1832488_1833730_+\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|341288
NZ_CP024958.1\|WP_015426950.1\|1835189_1835483_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024958.1\|WP_017864925.1\|1847226_1848135_-\|diacylglycerol-kinase-family-lipid-kinase	unknown	unknown	gnl\|CDD\|224513
NZ_CP024958.1\|WP_017864918.1\|1833719_1834868_+\|acetyl-CoA-C-acyltransferase	unknown	unknown	gnl\|CDD\|273881
NZ_CP024958.1\|WP_010906139.1\|1839454_1839937_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223659

Protein	Function_ID	Function_description	E-value
NZ_CP024958.1\|WP_017864923.1\|1841155_1842412_-\|Fe-S-cluster-assembly-protein-SufD	gnl\|CDD\|223791	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones].	1.98344e-131
NZ_CP024958.1\|WP_004255181.1\|1842549_1843320_-\|Fe-S-cluster-assembly-ATPase-SufC	gnl\|CDD\|223473	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones].	2.57723e-148
NZ_CP024958.1\|WP_010906139.1\|1839454_1839937_-\|hypothetical-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	3.28577e-22
NZ_CP024958.1\|WP_004255197.1\|1838880_1839339_-\|SUF-system-NifU-family-Fe-S-cluster-assembly-protein	gnl\|CDD\|273918	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family. Three iron-sulfur cluster assembly systems are known so far. ISC is broadly distributed while NIF tends to be associated with nitrogenase in nitrogen-fixing bacteria. The most recently described is SUF, believed to be important to maintain the function during aerobic stress of enzymes with labile Fe-S clusters. It is fairly widely distributed. This family represents one of two different proteins proposed to act as a scaffold on which the Fe-S cluster is built and from which it is transferred. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	9.34852e-67
NZ_CP024958.1\|WP_004255158.1\|1846393_1847080_-\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	4.09368e-76
NZ_CP024958.1\|WP_004255207.1\|1837234_1838647_-\|Fe-S-cluster-assembly-protein-SufB	gnl\|CDD\|131035	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB. This protein, SufB, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0
NZ_CP024958.1\|WP_012898347.1\|1830475_1830781_-\|hypothetical-protein	gnl\|CDD\|226801	COG4357, COG4357, Zinc finger domain containing protein (CHY type) [Function unknown].	3.59649e-28
NZ_CP024958.1\|WP_017864916.1\|1831774_1832344_-\|biotin-transporter-BioY	gnl\|CDD\|224187	COG1268, BioY, Uncharacterized conserved protein [General function prediction only].	4.57143e-46
NZ_CP024958.1\|WP_017864924.1\|1843494_1844826_-\|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase	gnl\|CDD\|133463	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins. WecA is an UDP-N-acetylglucosamine (GlcNAc):undecaprenyl-phosphate (Und-P) GlcNAc-1-phosphate transferase that catalyzes the formation of a phosphodiester bond between a membrane-associated undecaprenyl-phosphate molecule and N-acetylglucosamine 1-phosphate, which is usually donated by a soluble UDP-N-acetylglucosamine precursor. WecA participates in the biosynthesis of O antigen LPS in many enteric bacteria and is also involved in the biosynthesis of enterobacterial common antigen. A conserved short sequence motif and a conserved arginine at a cytosolic loop of this integral membrane protein were shown to be critical in recognition of substrate UDP-N-acetylglucosamine.	4.53364e-84
NZ_CP024958.1\|WP_004255173.1\|1844828_1845530_-\|adaptor-protein-MecA	gnl\|CDD\|227199	COG4862, MecA, Negative regulator of genetic competence, sporulation and motility [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Cell motility and secretion].	3.81196e-86
NZ_CP024958.1\|WP_017864925.1\|1847226_1848135_-\|diacylglycerol-kinase-family-lipid-kinase	gnl\|CDD\|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	4.34242e-71
NZ_CP024958.1\|WP_080613268.1\|1835479_1836226_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|187594	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs. This subgroup includes the Escherichai coli K12 BKR, FabG. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	1.24822e-71
NZ_CP024958.1\|WP_004255189.1\|1839938_1841156_-\|cysteine-desulfurase	gnl\|CDD\|131034	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0
NZ_CP024958.1\|WP_017864915.1\|1830797_1831769_-\|biotin--[acetyl-CoA-carboxylase]-ligase	gnl\|CDD\|237010	PRK11886, PRK11886, bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA.	1.04172e-68
NZ_CP024958.1\|WP_017864917.1\|1832488_1833730_+\|AMP-binding-protein	gnl\|CDD\|341288	cd17633, AFD_YhfT-like, fatty acid-CoA ligase VraA. This family of acyl-CoA ligases includes Bacillus subtilis YhfT, as well as long-chain fatty acid-CoA ligase VraA, all of which are as yet to be characterized. These proteins belong to the adenylate-forming enzymes which catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain	3.16072e-69
NZ_CP024958.1\|WP_004255171.1\|1845659_1846394_-\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	1.02808e-157
NZ_CP024958.1\|WP_017864918.1\|1833719_1834868_+\|acetyl-CoA-C-acyltransferase	gnl\|CDD\|273881	TIGR01930, 3-ketoacyl-CoA_thiolase, acetyl-CoA acetyltransferases. This model represents a large family of enzymes which catalyze the thiolysis of a linear fatty acid CoA (or acetoacetyl-CoA) using a second CoA molecule to produce acetyl-CoA and a CoA-ester product two carbons shorter (or, alternatively, the condensation of two molecules of acetyl-CoA to produce acetoacetyl-CoA and CoA). This enzyme is also known as "thiolase", "3-ketoacyl-CoA thiolase", "beta-ketothiolase" and "Fatty oxidation complex beta subunit". When catalyzing the degradative reaction on fatty acids the corresponding EC number is 2.3.1.16. The condensation reaction corresponds to 2.3.1.9. Note that the enzymes which catalyze the condensation are generally not involved in fatty acid biosynthesis, which is carried out by a decarboxylating condensation of acetyl and malonyl esters of acyl carrier proteins. Rather, this activity may produce acetoacetyl-CoA for pathways such as IPP biosynthesis in the absence of sufficient fatty acid oxidation. [Fatty acid and phospholipid metabolism, Other].	9.24128e-157
NZ_CP024958.1\|WP_017864921.1\|1836248_1837094_+\|2-nitropropane-dioxygenase	gnl\|CDD\|132195	TIGR03151, enACPred_II, putative enoyl-[acyl-carrier-protein] reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.	3.63043e-85

>NZ_CP024958.1|WP_004255207.1|1837234_1838647_-|Fe-S-cluster-assembly-protein-SufB
MTENSTQEVVKDLEEYKFGFHDNAELEFTTGLGLTEEVIREISETKNEPEWMLEFRLKSFEAFKKLDMPKWGPDLSGIDFNDIVYYQKPSAKAARSWEDVPQEIKDTFEKIGIPEAERSYLAGASAQYESEVVYHNMKDEFEKLGIIFTDTDSGLRDYPEIFKKYFSKLVPPTDNKLAALNSAVWSGGSFVYVPKGVKCEIPIQAYFRINNEKSGQFERTLIIVEEGASIQYVEGCTAPTYSASSLHAAVVEIFVEEGGYMRYSTIQNWSDNVYNLVTKRAAAEKNATVEWIDGNLGSKVSMKYPAVHLNGPGARGTMLSIAFAGANQNQDTGAKMIHNAPNTSSSIISKSIAKNGGAVNYRGQVTFGKNSKKSASHIECDTILMDDLSKSDTVPFNEIHNSQVALEHEAKVSKISEEQLYYLMSRGLTEKEATDMIVMGFIEPFTKELPMEYAVELNRLISYSMEGSIG
>NZ_CP024958.1|WP_017864921.1|1836248_1837094_+|2-nitropropane-dioxygenase
MTWYRELGIKYPLFQGGMAWASNAELVAAVSNNGALGIIGSGGRTANELRRMIRKTKSLTSQPFGVNLMLLDKNIKQLLEVICEEKISVVTTGAGSPKEIIDTIIANNIKLFPVVPNKEIALKMLKLPIFGIIVEGNEAGGHVGSQNLASLLKEIAPICPLPLIAAGGIYDHHTASLANILGANGVQVGTAFLLAKECQISPIYQELICKSEENGTSLISDKNGHLTRLLNISSEYPLNKSLKAAVEKGDLINGAFMAGSSSAYLEKIEPVENIIQRIMKK
>NZ_CP024958.1|WP_080613268.1|1835479_1836226_+|SDR-family-NAD(P)-dependent-oxidoreductase
MNKRTILITGATRGIGWAIAQKAAQANHKVILTGRDPLSLKSRAEELKKKFPKTEIQAITLDVSNRSSVANAAKLIKDIDILINNAGITADSTFKKMSPEIWDEVISVNLTGVFNSTHALLDKINQGGQIITLTSKSALFGNFGQANYAASKAGIIAFTKTLAKELQKSMIRVNSVSPAAVTDMTLPVLKSLKETYGQNIPDEWKMGSSSDVANFIINDLIETEMTGKIFSVNGSEIGYWQEPTFHKL
>NZ_CP024958.1|WP_015426950.1|1835189_1835483_+|hypothetical-protein
MKLYKKINKADLIDYLQSVKDTNSLHYGKNPIIPGNFLLFILEEMYQEFYSVPLSYLKANFCSPAYLNERFCFIFNQNAFQITDRNQTLILKGEWKQ
>NZ_CP024958.1|WP_080613267.1|1834852_1835215_+|hypothetical-protein
MVSKMILIAQKSLPRHFKLEGQKNFLSLLPQLWQELEGIPYSLKNGENWLLSEEIIRYPSSNYSFDKLKLHILSEHITRHSKKYIINLSLEITSNTKLLAQINLSLLSEDSWNEIIQKNQ
>NZ_CP024958.1|WP_017864918.1|1833719_1834868_+|acetyl-CoA-C-acyltransferase
MSFKNPVGIIAANRLPIGKINGFYKKISPETLYQNLIKQQFNKNPLLKKADIDYIILGNVTNQGGNLARRCALKAGFSSQVPAFTIDQQCGSGLIAMISSANYIISGEASIICTGGVESTSQANIVLDSESSQPINRFKMAPEPYEDFDMGTIADMTALKYNIPRSVQDLYALNSHKKATQAIEGKLLENEVFPYQDEGFTISSDQTVRPKSSMEALSKLTPAFTTNGTATAGNSCPINDGASSIILSSTNNPFDFQGYYLGQTTIALSPSDFLLGPIKATEKLLQKFNLKLNDIEAIELNEAFASQAILFQNYFKLDDIKLNAYGGALAFGHPYGATGGILISRLLNRLNQVQKPCLGIATLCVAGGMGISVLIGNHWYQK
>NZ_CP024958.1|WP_017864917.1|1832488_1833730_+|AMP-binding-protein
MEKNKFNFSKLAALFTDYPALKIDEISYSYQQINDLIQRKLTDYSHFFKTVITLINDSPLNFIIDFLAIIESGNYPLVVDKSFKKKSFEFGLIPEDTLFLASTSGTTGPPKIYYRNWESWKMGFEVCDDLFHLSNSQALAATSPLTTSLGLHTLMCALYLGKTFLAITNPSQFINITENYALFTVPTYLLNNLNELFALTSPEIIFLGGGTLSPEAINKVRKKLPQTQMIEFYGSSETSFISWQAVNEGKKTSSVGKLFPHVELTLGPKYRLTVKSPYLFSGYLNQPYPQSWTTDDLGTLKNNHLYLFGRRSDIIEHGANKIFPEEIERMAKDLCEDCIAFGVFDERYSQKIALLLLNPIEKEKLIKILAQRLPKYKLPQIYLETPTLNFTKNQKISRKELEKKYFRGVYHEL
>NZ_CP024958.1|WP_017864916.1|1831774_1832344_-|biotin-transporter-BioY
MTKNQKVKTLTYSAFMTAFIIILGFLPGIPIGFIPVPIILQNMGIMMAGGLLGPKYGTISVGAFLTLALIGLPVLTGGNGGAASFLGPSGGYRMAWLFTPFLIGFFLKKLQITALKNWIGELIIVLVFGVIFVDLVGAIWLSIQSNIPLITSLISNLVFIPGDCIKAILTVLIVRRLRKEGGFEMYFRK
>NZ_CP024958.1|WP_017864915.1|1830797_1831769_-|biotin--[acetyl-CoA-carboxylase]-ligase
MRTTKQFVLLKLLQQKGNWVSGDELAEELKLSRESIWKAINTLKRKGNQIESRKNLGYKYVGNDSLDEDTINFYSGMKFEDKIFVFDEVTSTQELAKQYLSSHEVKQPLIFVANNQTEGHGRRGRNFYSPSDTGLYFSLILPNPSHDILKIGLLTTSTAVAVVKVLEQFYKDKNFQLKWVNDIYLGTYKVGGIITEAALDLESSSAGNFIMGIGLNLSTKDFPADLSEKAQGINPEFKIDRNQLLAEMAKEVINNFANYRQPDLIDEYRKRSLLFGKNVTLKLGTKAVNGQVEGISDDGSLILKAKSGELQTFKSGEVVKVDW
>NZ_CP024958.1|WP_012898347.1|1830475_1830781_-|hypothetical-protein
MREKIWGKVIDEEGRCTHYHQENDIVALKCSDCEKYFSCYHCHDELENHLFRATDKEDFPVLCGHCGTKLNFNDYSRGECIKCSSAFNPNCHRHWQVYFNE
>NZ_CP024958.1|WP_004255197.1|1838880_1839339_-|SUF-system-NifU-family-Fe-S-cluster-assembly-protein
MALSKLDNLYRAVILDHSSNPRHAGELQTGCMVDLNNPTCGDVIRLTVEFENDVISNIAFSGHGCTISTASASMMTVAVLGKTKEEAKELATIFSAMVTGETDERQEKLGDAQFLAGVSKFPARVKCSTLAWNALKKAIDVGEAQETVIHGE
>NZ_CP024958.1|WP_010906139.1|1839454_1839937_-|hypothetical-protein
MLNWVASLPLWLATTFLFVVVFFRAQCTFWLGKLSYHGILKTKWGKKLEKNSETSAGILAIQKMGWPIIPLSFLTVGFQTAVQFGAGLTNWSWYKYTLAAIPGYLAWGFIYASGGLSLFRSLVQGSIGLLILFIIIILAVVIAANLVLRYIRKNGIKTDD
>NZ_CP024958.1|WP_004255189.1|1839938_1841156_-|cysteine-desulfurase
MLEGIKKDFPVLNQIVNDEPLVYLDNAATTQKPLKVLAAIKDYYENDNANVHRGVHTLAERATEKYEAAREKVRQFINAKSTKEVLFTRGTTTSINWVAQFAGQILKTGDEIVISIMEHHSNIVPWQEVAKKTGAILKFVYLKDGQLDMDDLRKKITNQTKFVSIAHVSNVLGTINPVEEITKIAHEHGAYMAVDGAQSTPHMAIDLQKMDVDFFAFSGHKMMGPTGIGVLYGKEELLNQFEPVEFGGEMIDFVYESHSTWTELPWKFEAGTPNIAGAIALGAAIDYIQELGIDQIHQHEIELIDYLMPKLQEIEGLKIYGPKDNVKRGGLIAFNIEGLHPHDVATALDMEGVAVRAGHHCAQPLLNYLETPATARASFYLYNTKADCDKLVEALKKTKEFFNLD
>NZ_CP024958.1|WP_017864923.1|1841155_1842412_-|Fe-S-cluster-assembly-protein-SufD
MNQEILNFSQMHAEPAWLSDLRQKAALEFENLELPNIERVKINRWGLDHLTISENEEIGSVPTFTEIPNHPLLVQVGSQTVMEQMTPNLAEQGVIFTDFNSALTEIPELLEENFGSVVPFNESRLTAANTATFNSGLVLYVPDGVEVLEPIESILMQEGSSEVPFNKRILIIVGKNAKVDYLERLETSGEQSSKVKANIVVEVIAKAGAQVKFAAIDRLGENVTASVVRRGLIGDNATVDWSVGVMNDGNVVADFDSDLKGNGSHSQIKVVGISTGHQTQGIDTRVTNFGLNSVGHILQNGVILDKGTLTFNAIGHIIKGAKNADAQQSSHVLMLSDKGRGDANPILLIDENEVTAGHAASVGQVDEEDLFYLQSRGLDEETAKRLVIRGFLGSVVSEIPVKSVQAEFIETIERKLGM
>NZ_CP024958.1|WP_004255181.1|1842549_1843320_-|Fe-S-cluster-assembly-ATPase-SufC
MATLEIKNLHVAIEDKEILKGVNLVINTNEIHAIMGPNGTGKSTLSAAIMGNPNYSVTQGEVLFDGQNVLEMSVDERARLGLFLAMQYPSEIPGITNAEFLRAAMNAKRAEDDKVSVMEFIKKLDKNMEVLSMKEEMAERYLNEGFSGGEKKRNEILQLLMLEPTFAILDEIDSGLDIDALKVVAKGVNSMRGEKFGALIITHYQRLLDYITPDVVHIMMDGRVVKTGGAELAKRLETEGYVNIAEELGLEYKEEV
>NZ_CP024958.1|WP_017864924.1|1843494_1844826_-|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase
MVDTLKEIPFALKFLIVIIITFGISVILTPIMTFVSKAIGAVDKPNERRVNKKPMSSAGGLVIFIAFAIATLFILPHIVHNQPPIHSQPPVHGASHQPIQLVSYFSYIWPFIVGAGIVVLTGLIDDIKEISPKMKLLGLTVAASFIWFFTNARFDNLKIPFGGPLLIFPAWLSFIFTVFWILAITNAINLIDGLDGLASGVSIISLTTMGIVSYFFLPSPNVFLPITIFIMVAAIMGFFPYNYHPAIIYLGDTGALFLGFIISVASLQGLKNATAVAVLTPLLILGVPITDTIMAMVRRKLNRQSIATADKRHLHHRLMALGFTHRGAVLVIYGIASIFAFISILLQFSSRIGGILLVIACLFGLEIFIELVGILGENRQPVLKALKFVGNSSYRDKVLHSDEDADIDENEEDIENHSMIDEEIDEPTQEFPIQNYRRSRNKK
>NZ_CP024958.1|WP_004255173.1|1844828_1845530_-|adaptor-protein-MecA
MKYEDINENTIKITLSFDDLTDYDIKLSDFFGNQEVIEQFFYELVDELGLENRFGNVGMLTFQIQPFPQGVHMIVHEEAMLGEGGEIPDDPEEFEELMTGFYNKLNEIGADMARERGITDFKPGLGLPGTKKDEAEQEPDFIYYSIRYEDIMSVLTGIKNVKFADEESEFYRYDGNFYLVVLDNQKEKGKMHVESTRSRMMEYGEATKMSREFLQEYGECLIATRALDVLRKI
>NZ_CP024958.1|WP_004255171.1|1845659_1846394_-|amino-acid-ABC-transporter-ATP-binding-protein
MNEYLIEIKNLHKYFGKNEVLKGLDIQIKKGEVVVMIGPSGSGKSTFLRTMNLLEKPTDGQVYFEGVNIADKSVDVFKHREKMGMVFQQFNLFPNMTVLENLCLAPVKTGKMTKEEAKKTAEDLLQRVGLSDKAEAYPQALSGGQQQRVAIARALAMNPDVMLFDEPTSALDPEMVGEVLAVMQELAKEGMTMVVVTHEMGFAKTVADRVLFMADGTIVEQGKPAQVFDSPKEKRTQDFLAKVL
>NZ_CP024958.1|WP_004255158.1|1846393_1847080_-|amino-acid-ABC-transporter-permease
MNFDFLPKYLPYFNDGMIVTILISAFVVLIGTLLGIVTALAKISKIAPLRWLANIYIEIFRGTPMLVQIMLGFGLMGSLSLPTFQVGILQQDLGRLIPGIIVISLNSGAYMAEIVRAGIEAVPLGQKEAAYSLGIRPRQAMATVILPQALRNILPAVGNEFVTIIKDSSLLYTIGVMEVFNGAQTVANLTYQTISPMLFVALYYFVVTFVVSRLLVLFEKKLGKGYAK
>NZ_CP024958.1|WP_017864925.1|1847226_1848135_-|diacylglycerol-kinase-family-lipid-kinase
MTYYLLANPNSGAGKGARTLETLIPYLEKNNYEYRLFKTKAAGEEGALVRQILDLKNPDDHLVIIGGDGTISLVINELPEEEPFSYIPSGSGNDFARSLKLKLDPIESFEAARRGINHEIFIMNYQSKGLSGYALNNIGIGLDATIVKSANEGKLKQVLNKLKLGSFSYILTALHVLITKKPFPALIEVENQEISLENAFLMTFTKHPYFGGGVKISPEATNENADIHLVEYNKHHLLRTFSLIPSVLRGMHLKHPLFLHRVSPQFSVELAESQPVQIDGEIHELVAADRLSISTERRMIIY

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP024958_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024958_4

2144746-2144841

Orphan

Consensus_repeat	Method
TCTTCCTCAATCTTCCCAATTCTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP024958_4

>merge|NZ_CP024958|4|2144746-2144841|CRISPRCasFinder
TTTGCCAGAATCTTCCTCAATCTTCCCAATTCTTTTAAAATAAACATTTACGCAAGTTATACTTAGTAATATTCTTCCTCAATTTTCCCAATTCTT

>NZ_CP024958|4|3|2144746-2144841|CRISPRCasFinder
TTTGCCAGAATCTTCCTCAATCTT	CCCAATTCTTTTAAAATAAACATTTACGCAAGTTATACTTAGTAATAT
TCTTCCTCAATTTTCCCAATTCTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024958.1\|WP_017865113.1\|2148653_2150699_-\|MnhB-domain-containing-protein	unknown	unknown	gnl\|CDD\|173412
NZ_CP024958.1\|WP_017865116.1\|2153879_2155148_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|319860
NZ_CP024958.1\|WP_017865104.1\|2132333_2133914_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|163522
NZ_CP024958.1\|WP_017865110.1\|2146473_2146965_-\|antirestriction-protein-ArdA	unknown	unknown	gnl\|CDD\|377800
NZ_CP024958.1\|WP_004254487.1\|2138587_2139046_+\|arginine-repressor	unknown	unknown	gnl\|CDD\|130592
NZ_CP024958.1\|WP_017865109.1\|2146203_2146413_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024958.1\|WP_017865115.1\|2153266_2153632_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372239
NZ_CP024958.1\|WP_017865112.1\|2147577_2148639_-\|CHAP-domain-containing-protein	unknown	unknown	gnl\|CDD\|380090
NZ_CP024958.1\|WP_017865107.1\|2141572_2144677_-\|DEAD/DEAH-box-helicase-family-protein	unknown	unknown	gnl\|CDD\|350770
NZ_CP024958.1\|WP_017865108.1\|2144871_2146143_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271189
NZ_CP024958.1\|WP_012898546.1\|2153640_2153874_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|213911
NZ_CP024958.1\|WP_004254507.1\|2134044_2135109_-\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|179366
NZ_CP024958.1\|WP_025016838.1\|2139229_2140561_-\|UDP-N-acetylmuramate--L-alanine-ligase	unknown	unknown	gnl\|CDD\|234757
NZ_CP024958.1\|WP_017865103.1\|2131372_2132317_-\|carbamate-kinase	unknown	unknown	gnl\|CDD\|223623
NZ_CP024958.1\|WP_017865111.1\|2146988_2147483_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024958.1\|WP_010906279.1\|2136825_2138520_-\|arginine--tRNA-ligase	unknown	unknown	gnl\|CDD\|183534
NZ_CP024958.1\|WP_010906281.1\|2140763_2141357_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024958.1\|WP_004254504.1\|2135291_2136524_-\|arginine-deiminase	unknown	unknown	gnl\|CDD\|234949
NZ_CP024958.1\|WP_017865114.1\|2150699_2153267_-\|conjugal-transfer-protein	unknown	unknown	gnl\|CDD\|315512
NZ_CP024958.1\|WP_017865102.1\|2130396_2131341_-\|carbamate-kinase	unknown	unknown	gnl\|CDD\|223623

Protein	Function_ID	Function_description	E-value
NZ_CP024958.1\|WP_017865116.1\|2153879_2155148_-\|hypothetical-protein	gnl\|CDD\|319860	cd16386, TcpC_N, N-terminal domain of conjugative transposon protein TcpC. This family contains the N-terminal domain of conjugation protein TcpC and similar proteins. TcpC is required for efficient conjugative transfer, localizing to the cell membrane independently of other conjugation proteins, where membrane localization is important for its function, oligomerization and interaction with the conjugation proteins TcpA, TcpH, and TcpG. N-terminal region (sometimes referred to as central domain) of TcpC is required for efficient conjugation, oligomerization and protein-protein interactions. TcpC has low level sequence identity to proteins encoded by the conjugative transposon Tn916, which is responsible for a large proportion of the tetracycline resistance in different pathogens.	3.58814e-16
NZ_CP024958.1\|WP_017865104.1\|2132333_2133914_-\|amino-acid-permease	gnl\|CDD\|163522	TIGR03810, arginine-ornithine_antiporter, arginine-ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2. [Transport and binding proteins, Amino acids, peptides and amines].	1.01761e-157
NZ_CP024958.1\|WP_017865110.1\|2146473_2146965_-\|antirestriction-protein-ArdA	gnl\|CDD\|377800	pfam07275, ArdA, Antirestriction protein (ArdA). This family consists of several bacterial antirestriction (ArdA) proteins. ArdA functions in bacterial conjugation to allow an unmodified plasmid to evade restriction in the recipient bacterium and yet acquire cognate modification.	2.76702e-29
NZ_CP024958.1\|WP_004254487.1\|2138587_2139046_+\|arginine-repressor	gnl\|CDD\|130592	TIGR01529, Arginine_repressor., arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs. [Amino acid biosynthesis, Glutamate family, Regulatory functions, DNA interactions].	4.3854e-60
NZ_CP024958.1\|WP_017865115.1\|2153266_2153632_-\|hypothetical-protein	gnl\|CDD\|372239	pfam12648, TcpE, TcpE family. This family of proteins includes TcpE a conjugative transposon membrane protein.This family of proteins is found in bacteria. Proteins in this family are typically between 122 and 168 amino acids in length.	1.12469e-06
NZ_CP024958.1\|WP_017865112.1\|2147577_2148639_-\|CHAP-domain-containing-protein	gnl\|CDD\|380090	pfam18013, Phage_lysozyme2, Phage tail lysozyme. This domain has a lysozyme like fold. It is found in the tail protein of various phages probably giving them the ability to degrade the host cell wall peptidoglycan layer.	4.26132e-36
NZ_CP024958.1\|WP_017865107.1\|2141572_2144677_-\|DEAD/DEAH-box-helicase-family-protein	gnl\|CDD\|350770	cd18012, DEXQc_arch_SWI2_SNF2, DEAQ-box helicase domain of archaeal and bacterial SNF2-related proteins. Proteins belonging to SNF2 family of DNA dependent ATPases are important members of the chromatin remodeling complexes that are implicated in epigenetic control of gene expression. The Snf2 family comprises a large group of ATP-hydrolyzing proteins that are ubiquitous in eukaryotes, but also present in eubacteria and archaea. Archaeal SWI2 and SNF2 are members of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	5.26692e-95
NZ_CP024958.1\|WP_017865108.1\|2144871_2146143_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	6.40931e-11
NZ_CP024958.1\|WP_012898546.1\|2153640_2153874_-\|hypothetical-protein	gnl\|CDD\|213911	TIGR04298, hypothetical_protein_HMPREF9690_04798, histidine-histamine antiporter. Members of this protein family are antiporters that exchange histidine with histamine, product of histidine decarboxylation. A system consisting of this protein, and a histidine decarboxylase encoded by an adjacent gene, creates decarboxylation/antiport proton-motive cycle that provides a transient resistance to acidic conditions.	0.00135919
NZ_CP024958.1\|WP_004254507.1\|2134044_2135109_-\|ornithine-carbamoyltransferase	gnl\|CDD\|179366	PRK02102, PRK02102, ornithine carbamoyltransferase; Validated.	0
NZ_CP024958.1\|WP_025016838.1\|2139229_2140561_-\|UDP-N-acetylmuramate--L-alanine-ligase	gnl\|CDD\|234757	PRK00421, murC, UDP-N-acetylmuramate--L-alanine ligase; Provisional.	0
NZ_CP024958.1\|WP_017865103.1\|2131372_2132317_-\|carbamate-kinase	gnl\|CDD\|223623	COG0549, ArcC, Carbamate kinase [Amino acid transport and metabolism].	2.26731e-173
NZ_CP024958.1\|WP_017865113.1\|2148653_2150699_-\|MnhB-domain-containing-protein	gnl\|CDD\|173412	PTZ00121, PTZ00121, MAEBL; Provisional.	7.86699e-08
NZ_CP024958.1\|WP_010906279.1\|2136825_2138520_-\|arginine--tRNA-ligase	gnl\|CDD\|183534	PRK12451, PRK12451, arginyl-tRNA synthetase; Reviewed.	0
NZ_CP024958.1\|WP_004254504.1\|2135291_2136524_-\|arginine-deiminase	gnl\|CDD\|234949	PRK01388, PRK01388, arginine deiminase; Provisional.	0
NZ_CP024958.1\|WP_017865114.1\|2150699_2153267_-\|conjugal-transfer-protein	gnl\|CDD\|315512	pfam12846, AAA_10, AAA-like domain. This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins.	2.04162e-76
NZ_CP024958.1\|WP_017865102.1\|2130396_2131341_-\|carbamate-kinase	gnl\|CDD\|223623	COG0549, ArcC, Carbamate kinase [Amino acid transport and metabolism].	1.26435e-176

>NZ_CP024958.1|WP_017865107.1|2141572_2144677_-|DEAD/DEAH-box-helicase-family-protein
MSRMMPARVRSEGIALYAKGFLNDPIETDFKLTAEIDGEEVSYDLDGAQDSCTCAVFQQNHRYCKHIAAIEEYLKNQDKGSQETKDKEIKGAERALFGENVAFLDAVNGETQLNFNTDQYSIEVQIEDNSQLYDYFSMDYFLYFDLKLRSKNLGRSYVIKDIPYFLRALKNYSQYSLGSLHYIDLFFDNFDEASQEFLTFLLKIDSKSDEALTKSLYIKNGRYLNIPFLFLEEAMDLVSALENYQLQITGRTVNYFTFIALDNDSEIFKFKVESQQDYIELKLYSEDYHNFYDYSLLYANNVFYKLNQEQRRLLLVLDKQFAKKSQIKFSYADKDKLAQALQQLSTLGEIEAPDHFVVRPFDAKFTFDLLEDQTISLAMTFDYGSFSIDSFHDLETLEFSRDLRKEQKIFALMERLQFAKAFNSSLNIPENLSENFFLKILPAFQKLGQIELSPTLRNMRMDEVPEIHIDSQGGLLDISFDIPQVEDGEFANVIAKLQENAEFYISESGKFYHFNEKFDRLKAALNELDDQFVIQGSSLHVNINRSFQISKIFENIGGASFSEKFKSLYQHLTHPEEFPYEKPEHIKASLRSYQETGVRWMSMLSHYNLGGILADDMGLGKTVQAITFILSNLKKDESVLITAPASLTYNWASEFEKFTDEIDFAVIDGTKAERSKEIQEKHQIYITSYGSFLKDFEDYQDKKLNYLLLDEAQVVKNYSSKTNKSLSALNVEHTFALSGTPLENRIEEIWAIFQVVMPGFLPKREKFNKMEPSVISRLIQPFIMRRKKEDVLEELPEKMEITVYNQLADDQKVIYLAQLELMQKQVLEMDSAALSRSRIEILAGITRLRQICNTPALFMDDYKGSSGKLERLRELLAQIKDSGHRPLIFSQFTKVFPHIEKLMEEQEMTAYKLTGSTPIKDRLSMVQAFNAGSRDAFLVSLKAGGVGLNLTSADVVILVDLWWNPAVEEQAIARAHRMGQKNTVEVIRLITKGTIEEKIMEIQERKKDLIANVLEGDTVDKVLSEAEIREILGV
>NZ_CP024958.1|WP_010906281.1|2140763_2141357_-|hypothetical-protein
MVERRVVFPVIGDDEALQKDTRVIFTNQQLLTRNPSLQDEASIENNKPKTDAKRPESFKPYKAKTSFSTQHRPLNSNHDGVSSYDKMPKKTSVDESKERAKRAAATLPKPPKQYVSPLERDKEDITVRRSTSAILNKRPSANDNPIRDMKNQGMNVSDAVAKGGMKKAVPHGAAANDTQKGSYFENKRKNIFDRGIV
>NZ_CP024958.1|WP_025016838.1|2139229_2140561_-|UDP-N-acetylmuramate--L-alanine-ligase
MEKTYHFTGIKGSGMSALALMLHQMGKKVQGSDSTDYFFTQRGLEQANVPLLPFDEKNIKPEFELIAGNAFRDDNNVEIAFAHKNGFPFKRYHEFLGHFMEDFTSIGVAGAHGKTSTTGMLAHVMSNIVDTSYLIGDGTGRGIEGSEYFVFESDEYERHFMPYHPEYTIMTNIDFDHPDYFEGIEDVTSAFQDYANNIKKGIFAYGEDVNLRKLTAKAPIYYYGFEANDDYRAENLVRSTRGSSFDAYFRGEKIGHFVVPAYGKHNVLNALSVVAVCHNLGLDMTEVADHLLTFRGVKRRFTEKKVGETVIIDDFAHHPTEIEATLDAARQKYPDREIVAVFQPHTFTRTIAFADEFAEVLDHADTVYLAQIYGSAREVDHHEITAQDLADKVRKPAKVIDLDNVSPLLDHDRGVYVFMGAGNIQKYELAFEKLLSQVSTNLQ
>NZ_CP024958.1|WP_004254487.1|2138587_2139046_+|arginine-repressor
MKRDKRLEIIKEIVTNNKISTQEELQSLLLERGVEVTQATLSRDIRKLNIIKKRDKGESFYSFLTSGNSKINSDLQLYFYNFVISAKSVGALVVIRTKLGEADVLANALDDERDSRTDILGTIAGADTLLVICASEKAANILTAEIKYILLG
>NZ_CP024958.1|WP_010906279.1|2136825_2138520_-|arginine--tRNA-ligase
MDEKQLVSQALSAAIDGVLGVEQIAAIIEKPKSSDLGDLAFPAFQLAKTLRKSPQIIAGEIAEKIDTKGFEKVIAVGPYVNFFLDKNATASEVIREVLTEGEHYGDANIGQGGNVPIDMSAPNIAKPFSIGHLRSTVIGDSIAKIYEKLGYQPIKINHLGDWGKQFGLLITAYKKYGDEATITANPIDELLKLYVKINAEAKEDPEVDEEGRQWFLKMEQGDEEALRIWKWFSDVSLIEFNRIYGKLGVSFDHFMGESFYSDKMDAIVEDLESKNLLHESKGALIVDLEKYNLNPALIKKTDGATLYITRDLATAAYRKKTFNFVKSLYVVGGEQTNHFKQLKAVLKEAGYDWSDDMVHVPFGMVTQGGKKFSTRKGHVVKLEMALDEAVDRAEKQIEAKNPNLENKEEVAKQVGVGAVKFYDLKTDRNNGYDFDLDEMVSFEGETGPYVQYAHARIQSILRKANRKVDINNISLAVSDAEAWEIVKALKEFPNVVKRAADNYEPSVIAKYAISLAQAFNKYYAHVRILEDDAQLDGRLALISATSIVLKEALRLLGVAAPENM
>NZ_CP024958.1|WP_004254504.1|2135291_2136524_-|arginine-deiminase
MNNGINVNSEIGKLKSVLLHRPGAEVENITPDTMKQLLFDDIPYLKIAQKEHDFFAQTLRDNGAETVYIENLATEVFEKSSETKEEFLSHLLHEAGYRPGRTYDGLTEYLTSMSTKDMVEKIYAGVRKNELDIKRTALSDMAGSDAENYFYLNPLPNAYFTRDPQASMGVGMTINKMTFPARQPESLITEYVMANHPRFKDTPIWRDRNHTTRIEGGDELILNKTTVAIGVSERTSSKTIQNLAKELFANPLSTFDTVLAVEIPHNHAMMHLDTVFTMINHDQFTVFPGIMDGAGNINVFILRPGKDDEVEIEHLTDLKAALKKVLNLSELDLIECGAGDPIAAPREQWNDGSNTLAIAPGEIVTYDRNYVTVELLKEHGIKVHEILSSELGRGRGGARCMSQPLWREDL
>NZ_CP024958.1|WP_004254507.1|2134044_2135109_-|ornithine-carbamoyltransferase
MTSPLITKAEVNSVFQGRSLLAEKDFTPAEINYLVDFGLHLKALKQQNIPHHYLEGKNIALLFAKTSTRTRAAFTTAAIDLGAHPEYLGANDIQLGIKESTEDTARVLGSMFDAIERRGFSQKEVEDLAKYSGVPVWNGLTDDWHPTQMIADFMTVKENFGHLKGLTLVYVGDGRNNMANSLIVTGSMLGVNVHIVAPDSLHPTKEVMDIANKFAEKSGAKPLATSNIEEGVKGANIIYSDVWVSMGESNWEERVKLLTPYRITMDMLKMTGNADNGQLIFMHCLPAFHDTETEYGKEIKEKYGLTEMEVTDEVFRSKYARQFEEAENRMHSIKAIMAATLGNLFIPAVPEDFK
>NZ_CP024958.1|WP_017865104.1|2132333_2133914_-|amino-acid-permease
MDAENKKGIGLAALVAIIVSGAIGGGVFNLSNDLATNASPGGVVISWIVIGFGILMLVLSLNHLVVNKPELSGVSDYARAGFGNMVGFISGWGYWLSAWAGNIAFAVLMMTSVDYFFPGVFQAKNGSLTILSVIVVSIVSWGLTLLVMRGVEGAAAINAIVLVAKLIPLFVFVIAGIVTFKAGVFSAHFWQNFVANTNADGVIKSLTWSNMTGGDLFSQVKGSLMVMIWVFVGIEGAAMMGDRAKRKSDAGKASILGLIALLVIYILLSLLPFGFMSQQELANTGQPGLVHILNAMVGGWGGSLMAIGLVISLLGAWLSWTMLPVEATQQLSEQKLLPSWFGKLNDKGAPKNSLLLTQLIVQIFLIVTYFVADAYNVFVYLCTAVIMICYALVGLYLFKLGIQEKKTSNIIIGFIAAAFQILALYYSGWQFVWLSLILYAVGFILYALGKKEYGIKMSTAELIATFVLTVLGILAVFGVYGNWLGLQDALGIDGNTLLVAVVPLIVVTFIVYFIVRSDINKKEIKN
>NZ_CP024958.1|WP_017865103.1|2131372_2132317_-|carbamate-kinase
MVKRIVVALGGNAILSKDPSAKAQKEALEVTAEQLMPLIKDNDRQMVVTHGNGPQVGNLLLQQLGSDSEKNPAMPLDTVGAMTQGEIGFWTVQAFTRAMANNGLERYPVISAVTQTLVDENDPAFKNASKPIGPFYTEEQLPEIKKQFPDWELMEDAGRGYRRVVPSPKPLEIIEAKAFGPILESGSLLIASGGGGIPVIKDGNGYKGVEAVIDKDFSAAKLAEMVGADELLILTSGGDVYLNYGKENQAHLETVKVSEMRKYVDEERFAKGSMGPKVEAAVSFVERTGKTATITSLDNVENFVKSGSGTRIVP
>NZ_CP024958.1|WP_017865102.1|2130396_2131341_-|carbamate-kinase
MVRRMVVALGGNAILTDDPTAKAQEKALETTAEQLIPLIRNNDVEMVVTHGNGPQVGNLLLQQLAADSPKNPAMPIDTAVAMTQGQIGFWMGQAFTRALIKNNMERVPVISVVTRTVVDKDDQAFEKPTKPIGPFYDEKGLAEMKAQYPDWVFVEDSGRGYRRVVPSPKPTRIVEAEALKPLISSSVLVTVSGGGGIPVIETKDGYEGVEAVIDKDFSAAKVAELVEADNLLILTAVDNVFVNFNKPNQKKLETVTMSEMKAYIEEGQFAAGSMLPKVEAAMEFVARTGRPATITSLENLEDFLNNDSGTKIIP
>NZ_CP024958.1|WP_017865108.1|2144871_2146143_-|tyrosine-type-recombinase/integrase
MKISEDGIKVLDPFSTEAKNGNQVWHLKYWNEPTQEWLIVTKTISKGKHTKKCPAEVYNYLEKRVREKIYKYSEFKINVSVSEAFKEWLSKRKLEVESGLISEGTHEGDVIYTKNFLSEFGNWNLKSIKTIHLKKYFDEFVVFKGLSRERKPSVNSLRNIRSKILLFFEYCWLEKSYISSSPMSELRIKKHKKTQSEYDKLKDKCFFSEQMEVLLNHMKEFEKTQNAKQEDCVRKRLFIEFTYLNGNRYGEGAGLKFSTVNHGGIWIKDQYSRKSSVKNPINKQTKTLTSRRIKAFENDDTRSKEIIQWFLDHNNSGINDDYIFVRKNGHLLSDDTMNRYLHRFEKQMPDKLSSSFVMHSLRHSYITRRAEAGDTETEIMAKVGHANPNLVHTLYTHVRDTLKFDEQKKFKKQPRLLKIEKSA
>NZ_CP024958.1|WP_017865109.1|2146203_2146413_-|hypothetical-protein
MSEKKYGTKQEIAEMFGVKKGTLDNDLTKMRRNPKFSEYVIRKSYKVTLVSVVGYEEFIKYCGRLQEIV
>NZ_CP024958.1|WP_017865110.1|2146473_2146965_-|antirestriction-protein-ArdA
METPKIYVVNLNSYNNMKTRGRWYDLPVDFRQIQRDLLLDEEHGEEFAIHDFENFYGYKVGEYSSIKELNEYAEKLEEISDLDHIKEFLEVYSIDDIIDNRDDLDFVEAGDAEDLAQELIEQMGGVETLSVETLQRYFNFGSYGRDLAISDYAKTSHGYVRNI
>NZ_CP024958.1|WP_017865111.1|2146988_2147483_-|hypothetical-protein
MSKLEEVRASGKMSERILENNFRIFDHRLREMEGELKLCPYATLSEVIAWAEQLKITIGKIKLIQESSIVKSKKEWESLEEKMLAYLQIDKAFIHVFSDHVIFLVQLEQRYHQRLDIFANNLDNSVRYLKRYADDLEKQGFSISGILAESKNLSDMNWLSILNY
>NZ_CP024958.1|WP_017865112.1|2147577_2148639_-|CHAP-domain-containing-protein
MIKKKLKRKIALSFVPLLLPFVFLLTFVFVLFNVVTADDSSNNNVNVNTTQQQVAKTIWDRALKEGGTKEGAAALIGNNQHESGGLIPSAIQSQASYDESKAMNDSIGGYGFGLAQWDSGRRVSLLKYAKSQNKSWTNTNVQVEFMFEHDSSDSTLLKKLVKETNVNQATEDIMRKWERAGAVDSLSQRQEYAQYWYTFFTTGGDNGTGGSGGSGITPDIPSGWTLDKPINTSGYVASSYEYKQCTWFTWNRAKDFGITFGMYMGNGADWQKQAGYTVTTTPTLHSAVSFSGGQTVGGQWTADPQYGHVAFVEGIHSDGSVLISQSGTGFSTVYTFQVLTKAQASQLHYVIGK
>NZ_CP024958.1|WP_017865113.1|2148653_2150699_-|MnhB-domain-containing-protein
MKKRTVLILVALFFCFIPLSKVGADTSSGSIPGIDLPDQNTLDDLNNSADDAQNAVDDITDASDDAINKELGDDSTNYELGDDKTPLYVYTSYLDTDNKIKVTVNMGVQGVFYIAKQEYSFTKWIDNMFSKINVVKDYGKVVLASGKTVYDSLLSPSNPSFWLIATFILYSLLRAFLKGHLAKTVIVIFGLLILNSSFFNLGGKVIDTVQTKSADINTSVIEKIKIGGVSNGKPDLLQTMVITPFERMNFDNDKQYGTKSENVNKLINSGGDAGKVADIRKAEKVSHLRFNEIGDKFSVALGAVINNFVLGCGVLLFKLGALIAGIAFLVFLLVAPIVAFLVFLSVFEQAGKNLVVKTGVTLILSVLLGYATTLFLSLNNFLDTIFGGAGANYLFMSIAKVIVYVILFKFRGFFFSVLGNASSAITNNRAFNAMDTAFSRAKQRTLQPILAGGTAGIIAGKTFAKDINYKVGTGAINRRRSENRFKKYGESMKNILDPNSDEKKRNKATKQKERFEKRFEKQNKKAEKKQQNTQTSETKKKRASDKVAPYSDMNKAQPKTETGKNLKDLKQKSEQKVEHDKKLEQLRPATERMVKNTQQNYEKKHQSAESRNQAIVKGVKANQEQKASAQRMAQRFEKNKQRSSPNSNKPTKTSVKQSVKSEDIKRENTQINRPTKIKNEL
>NZ_CP024958.1|WP_017865114.1|2150699_2153267_-|conjugal-transfer-protein
MFKNRKYNNIIAFHKNLMLKENGQVYAMFEVPAMNLSRTDEQAKETAKAIQHSAFLELIPYHNGEILTLPMNLDVFSRYQVLSDDLADDTREVAEYMFDGTLDLFAEEMGAPYEYRYFMVIPLKNNFISTNLIKTIKTTFEQLKAQAMDYLKEKQFFEDWYEEYEGLNDTLSSTLSTLDAKPTNGEQTKFINRYQYLRGLYYNREHEVNMLENSISNLEEVRKKYFVDGTSRLGNDYGESVVKVLPIAYLPNNVSYFHLVEYIQTMPFPVEVNTKYYFNKRKGWNSIKKKAERALGRLKQTQIEAYEKDSIQNDNIGASVEVLGDVIQRDNANEVFLSYLMTLIITGESVEEVEWKQNHLMEKMKAYNVELSSAMGDQPYLLDKLTFASDLMATDKNWIQPMSIENFCENLFFVTEKVGFDYGFYLGRVDGSSRNYGGDFKQALADSNNLVFVNPFAVNKDILGKVTNNPATDVTGETGAGKSFLAKLLFLYMTLMKSKNLYIDPKAEMRNQYLKVMEEYKNAPIPDDDASEKEIWSYNFKQAIVRYIEKINFITFDAENEKNHGVLDPIVFLTGQEAVDLSKTLVKQVIPEKYRNIDFDTEFPNAVEMFLEKRKRGELVGLLSVFEYLKDNEVEGISKVAKYLIGNSHRSVLSLIFSNGQNKAISMESRITILEVQGLSLPQAGDKPEQFTDAQINSLAIMYALGHFCTWFGRRDKSENTSTLFDEAWFLESTPIGAHILKEKRRTGRSYNDFTFQVSQSVKDKSELEGLKDSTSFGQTFAFLEPNEVDEELAYLKIPKTDESRKMMNTMTRAQCVYKDCFGRKSRMTVDGVFPEIAKLFETQEGKNASARKVA
>NZ_CP024958.1|WP_017865115.1|2153266_2153632_-|hypothetical-protein
MKDKRSFSLKRSFEQPVWIQQITRNWSLNNAKKFSTYAYAVGVFIILWIFPFQFLGIIPLNWRLFGDGFLAWSVGLAFSDYRPDGKSFPVYLWDFSKTYFIYFRKKGYWVKGVHHREVEED
>NZ_CP024958.1|WP_012898546.1|2153640_2153874_-|hypothetical-protein
MDLFQALWKLGSGPFLAWMGFKVIKEMHSHKTMAAVAVILGAGLVWWFAANPESFMNIIGGVVGKIIKWIGSKFNLG
>NZ_CP024958.1|WP_017865116.1|2153879_2155148_-|hypothetical-protein
MKPITINDLAKVLKVSVGVLLVLCQVNGIEVEDENSEITLEQSALLTQALKENDSVVPSMETKPTKKKKSILPFSEKKPKVSKKKWKKEEKEGSNQEPLKNQTYEKSVIPKSYNQKWSNRIFIGLIAGVVLLSVGSGVSYLQAKNHVHSEANKIVKSDKEQIQKISNGQSSQNYKAQIFLNDFVKAYFNVPSDEKEQEDYQKVLLAFYGQDLPVASQGQQKNQSELESSQLMDITNSTATYLVTYTTHTKENVPASKGKKASVKTVTHDNSTLFKISYGTVKGKYYVSTFPTFEDVTSLNAGKSAPLLTMDAVTNLSKSKENQLNTFVKSLLEAKTKNQETLELLADGLTLSSNEELVSVDYTNFQQKGKDIYKAIVQATFKNDMGTHPENYVFTITKTNKTFFARDFTNVITAKDMETMKG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP024958_2	2.1\|1568239\|18\|NZ_CP024958\|CRT	1568239-1568256	18	NZ_CP024958.1	707480-707497	2	0.889
NZ_CP024958_2	2.1\|1568239\|18\|NZ_CP024958\|CRT	1568239-1568256	18	NZ_CP024958.1	1567045-1567062	2	0.889
NZ_CP024958_2	2.5\|1568455\|18\|NZ_CP024958\|CRT	1568455-1568472	18	NZ_CP024958.1	707480-707497	2	0.889
NZ_CP024958_2	2.7\|1568539\|18\|NZ_CP024958\|CRT	1568539-1568556	18	NZ_CP024958.1	1567045-1567062	2	0.889
NZ_CP024958_2	2.7\|1568539\|18\|NZ_CP024958\|CRT	1568539-1568556	18	NZ_CP024958.1	2049830-2049847	2	0.889

1. spacer 2.1|1568239|18|NZ_CP024958|CRT matches to position: 707480-707497, mismatch: 2, identity: 0.889

gaaattgaatcggatgtt	CRISPR spacer
gaagttgaatcagatgtt	Protospacer
***.*******.******

2. spacer 2.1|1568239|18|NZ_CP024958|CRT matches to position: 1567045-1567062, mismatch: 2, identity: 0.889

gaaattgaatcggatgtt	CRISPR spacer
gagattgaatcagatgtt	Protospacer
**.********.******

3. spacer 2.5|1568455|18|NZ_CP024958|CRT matches to position: 707480-707497, mismatch: 2, identity: 0.889

gacgttgaatcagacgtt	CRISPR spacer
gaagttgaatcagatgtt	Protospacer
** ***********.***

4. spacer 2.7|1568539|18|NZ_CP024958|CRT matches to position: 1567045-1567062, mismatch: 2, identity: 0.889

gacattgaatcagatatt	CRISPR spacer
gagattgaatcagatgtt	Protospacer
** ************.**

5. spacer 2.7|1568539|18|NZ_CP024958|CRT matches to position: 2049830-2049847, mismatch: 2, identity: 0.889

gacattgaatcagatatt	CRISPR spacer
gacgtttaatcagatatt	Protospacer
***.** ***********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP024958_2	2.6\|1568491\|30\|NZ_CP024958\|CRT	1568491-1568520	30	NZ_CP047261	Pseudomonas syringae pv. maculicola str. ES4326 plasmid pPma4326F, complete sequence	288463-288492	7	0.767
NZ_CP024958_2	2.6\|1568491\|30\|NZ_CP024958\|CRT	1568491-1568520	30	MN033090	Leviviridae sp. isolate H1_Bulk_Litter_6_scaffold_2698 RNA-dependent RNA polymerase (H1BulkLitter62698_000001) gene, partial cds; hypothetical protein (H1BulkLitter62698_000002) gene, complete cds; and hypothetical protein (H1BulkLitter62698_000003) gene, partial cds	1652-1681	8	0.733

1. spacer 2.6|1568491|30|NZ_CP024958|CRT matches to NZ_CP047261 (Pseudomonas syringae pv. maculicola str. ES4326 plasmid pPma4326F, complete sequence) position: , mismatch: 7, identity: 0.767

gacgttgaatcggacgttgaatcagacgtt	CRISPR spacer
accgttgaatcggacgttcaatcggtccat	Protospacer
. **************** ****.* *  *

2. spacer 2.6|1568491|30|NZ_CP024958|CRT matches to MN033090 (Leviviridae sp. isolate H1_Bulk_Litter_6_scaffold_2698 RNA-dependent RNA polymerase (H1BulkLitter62698_000001) gene, partial cds; hypothetical protein (H1BulkLitter62698_000002) gene, complete cds; and hypothetical protein (H1BulkLitter62698_000003) gene, partial cds) position: , mismatch: 8, identity: 0.733

gacgttgaatcggacgttgaatcagacgtt	CRISPR spacer
tgggcataatcggaagtagaatcagacgtt	Protospacer
 . *.  ******* ** ************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

371138 : 383267

Streptococcus_phage(40.0%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003131595.1\|371138_371456_+	thioredoxin family protein	A0A0K2FIM3	Achromobacter_phage	4.5e-05	30.4
WP_015425841.1\|371541_372168_+\|tRNA	DUF4479 and tRNA-binding domain-containing protein	NA	NA	NA	NA
WP_017864127.1\|372330_373671_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_017864128.1\|373760_374150_+	single-stranded DNA-binding protein	A0A0K0MWE1	Streptococcus_phage	4.1e-24	44.3
WP_017864129.1\|374269_374554_+	co-chaperone GroES	A0A221S422	uncultured_virus	4.6e-09	33.0
WP_003131585.1\|374641_376270_+	chaperonin GroEL	A0A219YK78	uncultured_virus	4.9e-156	56.8
WP_003131583.1\|376315_377128_-	MBL fold metallo-hydrolase	A0A0C5AJ83	Bacteriophage	3.1e-34	38.1
WP_012897229.1\|377296_378739_-	cell wall metabolism sensor histidine kinase WalK	W8CYF6	Bacillus_phage	1.4e-32	33.0
WP_003131580.1\|378731_379433_-	response regulator transcription factor	W8CYM9	Bacillus_phage	1.2e-42	39.7
WP_012897230.1\|379610_380246_+	dTMP kinase	M1PSC7	Streptococcus_phage	5.4e-74	65.0
WP_003131573.1\|380378_381239_+	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	5.0e-67	45.2
WP_017864130.1\|381290_382073_+	stage 0 sporulation family protein	NA	NA	NA	NA
WP_011675472.1\|382065_382392_+	DNA replication initiation control protein YabA	NA	NA	NA	NA
WP_010905318.1\|382391_383267_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	8.7e-99	65.4

DBSCAN-SWA_2

932275 : 955724

Staphylococcus_phage(21.43%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003130964.1\|932275_932968_+	cell division ATP-binding protein FtsE	G9BWD6	Planktothrix_phage	2.7e-31	34.4
WP_012897609.1\|932960_933896_+	ABC transporter permease	NA	NA	NA	NA
WP_012897610.1\|933997_934975_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A096XT60	Enterococcus_phage	1.9e-118	66.0
WP_017864416.1\|935322_937491_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	2.3e-257	61.1
WP_003130968.1\|937626_938049_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A142F1R4	Bacillus_phage	2.3e-12	37.3
WP_012897612.1\|938050_938269_-	redoxin NrdH	C3U2K9	Lactococcus_phage	7.6e-12	47.6
WP_012897613.1\|938442_939081_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_012897614.1\|939355_941290_+	DNA topoisomerase IV subunit B	G3M9Z3	Bacillus_virus	1.1e-125	43.5
WP_003130975.1\|941494_942034_+	cysteine hydrolase family protein	NA	NA	NA	NA
WP_003130976.1\|942026_942860_+	3'-5' exonuclease	A0A0K2SUJ2	Clostridium_phage	3.1e-21	39.4
WP_003130977.1\|942856_943306_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_003130980.1\|943580_946055_+	DNA topoisomerase IV subunit A	G3M9Z5	Bacillus_virus	4.2e-98	32.2
WP_003130981.1\|946080_946986_-	magnesium transporter CorA family protein	NA	NA	NA	NA
WP_012897616.1\|947454_948543_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	1.9e-50	38.8
WP_012897617.1\|948542_949193_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	9.4e-42	43.1
WP_012897618.1\|949201_950398_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	3.2e-112	51.3
WP_003130993.1\|950425_950890_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.8e-39	53.7
WP_012897620.1\|950992_951445_+	lipoprotein signal peptidase	NA	NA	NA	NA
WP_003130995.1\|951505_952411_+	RluA family pseudouridine synthase	A0A2H4UV25	Bodo_saltans_virus	5.4e-11	28.2
WP_012897622.1\|953142_954765_+	hypothetical protein	NA	NA	NA	NA
WP_012897623.1\|954767_955724_+	glycosyltransferase family 2 protein	I1TED8	Salmonella_phage	4.0e-49	37.5

DBSCAN-SWA_3

1373662 : 1409326

Lactococcus_phage(54.55%)

integrase,holin,portal,tail,protease,capsid,terminase

attL 1366842:1366901|attR 1405916:1406016

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1366842:1366901	attL	NA	NA	NA	NA
WP_017864623.1\|1373662_1373950_-\|holin	phage holin	A0A1P8BKR5	Lactococcus_phage	2.8e-46	97.9
WP_017864624.1\|1373963_1374188_-\|holin	holin	Q9AZR4	Lactococcus_phage	1.4e-32	98.6
WP_017864625.1\|1374200_1374437_-	hypothetical protein	A0A1B1IM34	Lactococcus_phage	8.7e-30	90.8
WP_017864627.1\|1377947_1379489_-\|tail	phage tail protein	A0A1P8BKE1	Lactococcus_phage	6.5e-182	62.6
WP_017864628.1\|1379488_1383577_-\|tail	phage tail tape measure protein	A0A1S5SFC1	Streptococcus_phage	5.3e-114	37.4
WP_017864629.1\|1383654_1384218_-	DUF4177 domain-containing protein	NA	NA	NA	NA
WP_017864630.1\|1384492_1384798_-	hypothetical protein	NA	NA	NA	NA
WP_017864631.1\|1384854_1385433_-	hypothetical protein	A3F651	Streptococcus_phage	4.8e-29	42.3
WP_017864632.1\|1385447_1385837_-	hypothetical protein	NA	NA	NA	NA
WP_017864633.1\|1385833_1386238_-	hypothetical protein	A0A2P0ZLD7	Lactobacillus_phage	2.0e-13	39.7
WP_017864634.1\|1386230_1386617_-	hypothetical protein	A0A1S5SFE6	Streptococcus_phage	6.2e-17	40.9
WP_017864635.1\|1386582_1386915_-	hypothetical protein	A3F647	Streptococcus_phage	5.2e-12	42.1
WP_017864636.1\|1386932_1387190_-	hypothetical protein	A0A1X9IGH3	Lactococcus_phage	2.5e-06	46.2
WP_017864637.1\|1387253_1388375_-\|capsid	phage major capsid protein	A3F645	Streptococcus_phage	3.6e-81	46.1
WP_017864638.1\|1388374_1389148_-\|protease	Clp protease ClpP	A3F644	Streptococcus_phage	4.7e-40	38.1
WP_017864639.1\|1389134_1390328_-\|portal	phage portal protein	A0A2P0ZLC9	Lactobacillus_phage	8.1e-39	32.0
WP_100661400.1\|1390518_1392213_-\|terminase	terminase large subunit	A3F641	Streptococcus_phage	3.6e-210	62.6
WP_050558553.1\|1392254_1392515_-	hypothetical protein	NA	NA	NA	NA
WP_100661392.1\|1392989_1393292_-	HNH endonuclease	A0A1W6JQ75	Staphylococcus_phage	5.2e-19	54.7
WP_017864643.1\|1393337_1393637_-	hypothetical protein	NA	NA	NA	NA
WP_100661393.1\|1393928_1394186_-	hypothetical protein	V9VD26	Lactococcus_phage	4.9e-10	59.1
WP_032948022.1\|1394163_1394418_-	hypothetical protein	NA	NA	NA	NA
WP_017864648.1\|1394727_1395150_-	DUF3850 domain-containing protein	A0A097BYG6	Leuconostoc_phage	1.4e-09	46.2
WP_017864652.1\|1396157_1396523_-	hypothetical protein	Q9XJF2	Lactococcus_phage	8.2e-35	64.3
WP_017864653.1\|1396531_1397041_-	hypothetical protein	Q9AZU7	Lactococcus_phage	3.8e-22	96.6
WP_017864654.1\|1397051_1397384_-	hypothetical protein	A0A1P8BKU0	Lactococcus_phage	3.0e-52	96.3
WP_017864655.1\|1397488_1397899_-	hypothetical protein	A5GZ50	Lactococcus_phage	1.8e-70	91.2
WP_017864656.1\|1397911_1398154_-	hypothetical protein	A5GZ49	Lactococcus_phage	1.6e-34	81.2
WP_100661401.1\|1398146_1398992_-	DnaD domain protein	A5GZ47	Lactococcus_phage	1.3e-62	60.1
WP_017864658.1\|1399235_1400036_-	hypothetical protein	Q9AZQ0	Lactococcus_phage	1.1e-76	60.9
WP_017864659.1\|1400028_1400865_-	hypothetical protein	A0A1P8BKZ1	Lactococcus_phage	4.1e-106	82.6
WP_017864660.1\|1400968_1401205_-	DUF1408 domain-containing protein	A0A1P8BMJ7	Lactococcus_phage	1.8e-38	98.7
WP_080613249.1\|1401222_1401525_+	hypothetical protein	NA	NA	NA	NA
WP_017864662.1\|1401760_1402051_-	hypothetical protein	Q9AZW0	Lactococcus_phage	8.2e-46	91.7
WP_026138917.1\|1402063_1402819_-	hypothetical protein	A0A1P8BKE3	Lactococcus_phage	6.1e-101	73.7
WP_017864663.1\|1402833_1403025_-	antirepressor	NA	NA	NA	NA
WP_017864664.1\|1403304_1403658_+	helix-turn-helix domain-containing protein	A0A1S5S993	Streptococcus_phage	4.7e-11	56.2
WP_017864665.1\|1403638_1404724_+	ImmA/IrrE family metallo-endopeptidase	A0A0F6N3H6	Staphylococcus_phage	2.8e-06	25.5
WP_017864666.1\|1404770_1405850_+\|integrase	site-specific integrase	A5GYP9	Lactococcus_phage	2.0e-201	98.3
WP_003130477.1\|1406553_1406889_-	putative DNA-binding protein	NA	NA	NA	NA
1405916:1406016	attR	NA	NA	NA	NA
WP_012898054.1\|1407072_1407783_+	response regulator transcription factor	A0A1V0SGR9	Hokovirus	2.0e-05	29.1
WP_017864667.1\|1407772_1409326_+	two-component sensor histidine kinase	W8CYF6	Bacillus_phage	8.6e-33	39.1

DBSCAN-SWA_4

1507586 : 1517889

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_017864723.1\|1507586_1509143_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	3.0e-70	45.6
WP_003130055.1\|1509319_1509862_-	hypoxanthine phosphoribosyltransferase	A0A218MMB5	uncultured_virus	1.8e-09	29.9
WP_017864724.1\|1509998_1511036_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA
WP_017864725.1\|1511166_1511697_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_017864726.1\|1511747_1513337_-	ABC transporter ATP-binding protein	F2Y1V6	Organic_Lake_phycodnavirus	1.9e-11	33.1
WP_012898139.1\|1513503_1514052_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	7.2e-19	31.7
WP_017864727.1\|1514080_1515097_-	phosphoribosylformylglycinamidine cyclo-ligase	M4QRQ6	Synechococcus_phage	1.1e-60	41.8
WP_017864728.1\|1515285_1517889_-	ATP-dependent chaperone ClpB	K4FB40	Cronobacter_phage	8.5e-126	33.2

DBSCAN-SWA_5

1761800 : 1771659

Prochlorococcus_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003130886.1\|1761800_1762562_-	phosphate ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.5e-17	30.0
WP_003130885.1\|1762727_1763537_-	phosphate ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	7.0e-10	26.5
WP_003130884.1\|1763570_1764464_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA
WP_017864881.1\|1764463_1765387_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA
WP_017864882.1\|1765507_1766359_-	phosphate ABC transporter substrate-binding protein	E3SNT9	Prochlorococcus_phage	4.2e-05	27.3
WP_003130880.1\|1766705_1767602_-	phosphate ABC transporter substrate-binding protein	E3SM63	Prochlorococcus_phage	7.2e-08	32.4
WP_003130878.1\|1767879_1768347_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	2.7e-43	56.6
WP_012898308.1\|1768378_1768954_-	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
WP_017864883.1\|1769040_1771659_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	4.2e-64	33.3

DBSCAN-SWA_6

1922262 : 1985729

Lactococcus_phage(70.45%)

plate,head,tRNA,portal,tail,capsid,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_017864958.1\|1922262_1925061_-\|tRNA	isoleucine--tRNA ligase	A0A1V0SJ93	Klosneuvirus	4.8e-82	25.9
WP_017864959.1\|1925375_1926302_-	DivIVA domain-containing protein	NA	NA	NA	NA
WP_017864960.1\|1926358_1927150_-	RNA-binding protein	NA	NA	NA	NA
WP_010906174.1\|1927146_1927422_-	YggT family protein	NA	NA	NA	NA
WP_003132390.1\|1927421_1928012_-	cell division protein SepF	NA	NA	NA	NA
WP_003132391.1\|1928045_1928723_-	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_003132392.1\|1928726_1929980_-	cell division protein FtsZ	NA	NA	NA	NA
WP_003132393.1\|1930010_1931381_-	cell division protein FtsA	NA	NA	NA	NA
WP_026138945.1\|1931541_1932411_-	DegV family protein	A0A0N9SI50	Staphylococcus_phage	3.8e-14	35.3
WP_017864962.1\|1932523_1933252_-	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	A0A2D1A6G0	Rhodococcus_phage	5.5e-06	27.2
WP_010906176.1\|1933397_1934516_-	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_017864963.1\|1934646_1935492_-	aldo/keto reductase	A0A1V0SDE7	Indivirus	3.1e-29	32.5
WP_017864964.1\|1935503_1936832_-	MFS transporter	NA	NA	NA	NA
WP_017864965.1\|1936997_1937876_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003130788.1\|1937891_1938296_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_021722575.1\|1938377_1939688_-	aminopeptidase C	R4TV59	Phaeocystis_globosa_virus	9.7e-62	31.5
WP_017864967.1\|1939816_1940410_-	HD domain-containing protein	NA	NA	NA	NA
WP_017864968.1\|1940467_1941148_-	5'-methylthioadenosine/adenosylhomocysteine nucleosidase	NA	NA	NA	NA
WP_003130796.1\|1941179_1941458_-	hypothetical protein	NA	NA	NA	NA
WP_017864969.1\|1941450_1942035_-	NUDIX hydrolase	NA	NA	NA	NA
WP_017864970.1\|1942139_1943516_-	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	A0A0G2Y8M0	Acanthamoeba_polyphaga_mimivirus	2.7e-30	34.8
WP_012898440.1\|1943743_1944532_+	pyrroline-5-carboxylate reductase	A0A1X9I6T5	Streptococcus_phage	1.7e-32	33.6
WP_015427039.1\|1944610_1944880_-	30S ribosomal protein S15	NA	NA	NA	NA
WP_017864971.1\|1945065_1946949_-	Stk1 family PASTA domain-containing Ser/Thr kinase	A0A1V0SDC3	Indivirus	3.1e-21	31.6
WP_003130802.1\|1946948_1947725_-	Stp1/IreP family PP2C-type Ser/Thr phosphatase	NA	NA	NA	NA
WP_017864972.1\|1947804_1949079_-	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA	NA	NA	NA
WP_017864973.1\|1950435_1950807_+	hypothetical protein	NA	NA	NA	NA
WP_080613270.1\|1950865_1951663_-	DUF1828 domain-containing protein	NA	NA	NA	NA
WP_026138946.1\|1951628_1951865_-	hypothetical protein	NA	NA	NA	NA
WP_023188943.1\|1952176_1952356_-	hypothetical protein	Q9AZG2	Lactococcus_phage	1.5e-21	94.8
WP_017864977.1\|1952477_1952984_-	GNAT family N-acetyltransferase	Q9AZG4	Lactococcus_phage	5.2e-80	86.3
WP_017864979.1\|1954322_1955606_-	LysM peptidoglycan-binding domain-containing protein	B5SP49	Lactococcus_phage	7.2e-219	90.7
WP_017864980.1\|1955602_1955953_-	hypothetical protein	A0A1X9IGI3	Lactococcus_phage	1.7e-37	68.4
WP_017864981.1\|1955965_1956490_-	hypothetical protein	Q38610	Lactococcus_phage	2.6e-66	71.0
WP_080613272.1\|1956509_1957361_-	hypothetical protein	A0A126HC01	Lactococcus_phage	2.0e-76	65.2
WP_017864983.1\|1957365_1958331_-\|plate	phage baseplate upper protein	Q9AYV5	Lactococcus_phage	1.5e-144	80.1
WP_017864984.1\|1958343_1961094_-	peptidoglycan DD-metalloendopeptidase family protein	A0A1P8BMA1	Lactococcus_phage	0.0e+00	96.4
WP_017864985.1\|1961093_1961855_-	hypothetical protein	A0A1P8BM78	Lactococcus_phage	1.1e-134	93.7
WP_017864986.1\|1961864_1964930_-\|tail	phage tail tape measure protein	Q9G097	Lactococcus_phage	1.3e-255	80.2
WP_032948096.1\|1964946_1965204_-	hypothetical protein	A0A1P8BKT4	Lactococcus_phage	4.9e-26	66.3
WP_017864988.1\|1965284_1965647_-	hypothetical protein	Q77RZ7	Lactococcus_phage	2.8e-35	69.2
WP_017864989.1\|1965749_1966268_-\|tail	phage major tail protein, TP901-1 family	Q77K19	Lactococcus_phage	1.0e-78	89.3
WP_017864990.1\|1966278_1966668_-	hypothetical protein	Q77K20	Lactococcus_phage	1.3e-62	94.6
WP_017864991.1\|1966664_1967003_-	HK97 gp10 family phage protein	Q77K21	Lactococcus_phage	5.0e-55	98.2
WP_017864992.1\|1966999_1967311_-	hypothetical protein	A0A1P8BMJ2	Lactococcus_phage	5.3e-51	91.3
WP_017864993.1\|1967307_1967640_-\|head,tail	phage head-tail connector protein	A0A1P8BMC5	Lactococcus_phage	1.9e-51	95.5
WP_017864995.1\|1967915_1968869_-\|capsid	phage major capsid protein	Q9T1B7	Listeria_phage	1.4e-121	75.6
WP_017864996.1\|1968881_1969490_-	DUF4355 domain-containing protein	A0A182BQ92	Lactococcus_phage	8.9e-18	64.1
WP_017864997.1\|1969614_1970499_-	hypothetical protein	NA	NA	NA	NA
WP_017864999.1\|1970603_1971647_-	hypothetical protein	B5SP29	Lactococcus_phage	1.2e-184	96.2
WP_017865000.1\|1971650_1973012_-\|portal	phage portal protein	Q9AZ65	Lactococcus_phage	1.6e-240	94.5
WP_017865001.1\|1973012_1974401_-\|terminase	phage terminase large subunit	Q9AZ66	Lactococcus_phage	1.2e-272	98.9
WP_017865002.1\|1974393_1974795_-	hypothetical protein	A0A1P8BMH5	Lactococcus_phage	4.9e-57	86.9
WP_017865003.1\|1974957_1975416_-	hypothetical protein	A0A1P8BM80	Lactococcus_phage	2.4e-84	99.3
WP_017865004.1\|1975419_1975731_-	hypothetical protein	A0A1P8BM61	Lactococcus_phage	2.2e-49	93.2
WP_017865005.1\|1976003_1976345_-	hypothetical protein	M1NRW0	Streptococcus_phage	1.5e-27	55.5
WP_152415603.1\|1976651_1977119_+	hypothetical protein	NA	NA	NA	NA
WP_017865007.1\|1977145_1977556_-	hypothetical protein	A5GZ50	Lactococcus_phage	7.0e-67	90.2
WP_017865008.1\|1977568_1977811_-	hypothetical protein	A5GZ49	Lactococcus_phage	2.3e-38	91.2
WP_032948087.1\|1977803_1978736_-	DnaD domain protein	A5GZ47	Lactococcus_phage	1.2e-125	87.0
WP_017865011.1\|1979001_1979991_-	DUF1351 domain-containing protein	A0A1P8BLG1	Lactococcus_phage	1.0e-124	79.5
WP_017865012.1\|1979992_1980730_-	phage recombination protein Bet	A0A1P8BLN1	Lactococcus_phage	4.8e-135	97.1
WP_017865013.1\|1980850_1981066_-	DUF1408 domain-containing protein	Q38272	Lactococcus_phage	5.3e-34	98.6
WP_026138950.1\|1981065_1981263_-	helix-turn-helix transcriptional regulator	A0A1X9I6I3	Streptococcus_phage	3.9e-07	45.2
WP_017865015.1\|1981415_1981697_+	hypothetical protein	A0A1W6JPU7	Staphylococcus_phage	2.2e-32	66.3
WP_017865016.1\|1981687_1981873_-	hypothetical protein	NA	NA	NA	NA
WP_011835841.1\|1981967_1982237_-	hypothetical protein	NA	NA	NA	NA
WP_017865018.1\|1983022_1983268_-	helix-turn-helix transcriptional regulator	Q38329	Lactococcus_phage	9.1e-22	70.1
WP_017865019.1\|1983399_1983654_+	DUF2513 domain-containing protein	NA	NA	NA	NA
WP_017865020.1\|1983650_1983854_-	hypothetical protein	NA	NA	NA	NA
WP_017865021.1\|1984003_1984414_+	hypothetical protein	NA	NA	NA	NA
WP_017865022.1\|1984427_1984742_+	hypothetical protein	NA	NA	NA	NA
WP_017865023.1\|1985147_1985729_+	helix-turn-helix transcriptional regulator	A0A060QNS7	Streptococcus_phage	1.0e-18	42.9

DBSCAN-SWA_7

2325139 : 2333800

Lactococcus_phage(90.91%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_080613282.1\|2325139_2325757_-	helix-turn-helix transcriptional regulator	A0A1X9I5R4	Streptococcus_phage	1.0e-08	42.9
WP_017865218.1\|2325891_2326131_+	hypothetical protein	NA	NA	NA	NA
WP_017865220.1\|2326277_2326502_+	hypothetical protein	NA	NA	NA	NA
WP_017865221.1\|2326504_2327197_+	hypothetical protein	NA	NA	NA	NA
WP_017865223.1\|2327447_2327861_+	hypothetical protein	NA	NA	NA	NA
WP_017865224.1\|2328018_2328297_+	hypothetical protein	Q9AZJ1	Lactococcus_phage	8.4e-32	69.9
WP_017865225.1\|2328330_2328570_+	hypothetical protein	Q9AZJ0	Lactococcus_phage	2.0e-34	88.6
WP_017865226.1\|2328566_2328836_+	hypothetical protein	Q9AZE9	Lactococcus_phage	5.1e-34	85.0
WP_017865227.1\|2328819_2329014_+	hypothetical protein	Q9AZE8	Lactococcus_phage	4.3e-27	93.8
WP_017865228.1\|2329000_2329330_+	hypothetical protein	Q9AZI7	Lactococcus_phage	9.3e-54	94.5
WP_017865229.1\|2329333_2330128_+	hypothetical protein	Q9AZI6	Lactococcus_phage	1.8e-143	91.3
WP_100661397.1\|2330149_2331772_+	DNA primase	Q9AZI5	Lactococcus_phage	2.0e-290	92.1
WP_017865230.1\|2331989_2332532_+	hypothetical protein	Q9AZI4	Lactococcus_phage	1.7e-57	80.5
WP_017865231.1\|2332720_2333041_+	hypothetical protein	NA	NA	NA	NA
WP_017865232.1\|2333040_2333373_+	hypothetical protein	Q9AZE0	Lactococcus_phage	1.8e-41	76.9
WP_026138977.1\|2333476_2333800_+	sigma-70 family RNA polymerase sigma factor	Q9AZI1	Lactococcus_phage	1.6e-45	88.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP024958

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection