CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP017940	Phyllobacterium zundukense strain Tri-48 chromosome, complete genome	1 crisprs	csa3,cas3,RT,DEDDh,WYL	0	3
NZ_CP017942	Phyllobacterium zundukense strain Tri-48 plasmid unnamed3, complete sequence	0 crisprs	DEDDh,csa3	0	0
NZ_CP017944	Phyllobacterium zundukense strain Tri-48 plasmid unnamed4, complete sequence	0 crisprs	cas3	0	0
NZ_CP017945	Phyllobacterium zundukense strain Tri-48 plasmid unnamed5, complete sequence	1 crisprs	csa3	1	16
NZ_CP017943	Phyllobacterium zundukense strain Tri-48 plasmid unnamed2, complete sequence	0 crisprs	RT	0	0
NZ_CP017941	Phyllobacterium zundukense strain Tri-48 plasmid unnamed1, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP017945_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017945_1

153822-153924

Orphan

Consensus_repeat	Method
AAAAGTTCTCAGCTGAGAACTTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017945_1

>merge|NZ_CP017945|1|153822-153924|CRISPRCasFinder
AAAAGTTCTCAGCTGAGAACTTTTCACCAACTTCGCCCCATCGGACATTCAAATGGGATTCGCAGGAGGCGCATCCCGTAAAAGTTCTCAGCTGAGAACTTTT

>NZ_CP017945|1|1|153822-153924|CRISPRCasFinder
AAAAGTTCTCAGCTGAGAACTTTT	CACCAACTTCGCCCCATCGGACATTCAAATGGGATTCGCAGGAGGCGCATCCCGT
AAAAGTTCTCAGCTGAGAACTTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017945.1\|WP_100003873.1\|157030_158125_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227684
NZ_CP017945.1\|WP_100003808.1\|141388_142411_-\|acetyltransferase	unknown	unknown	gnl\|CDD\|379237
NZ_CP017945.1\|WP_100003809.1\|142842_146838_+\|non-ribosomal-peptide-synthetase	unknown	unknown	gnl\|CDD\|237108
NZ_CP017945.1\|WP_100003811.1\|149009_149909_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225375
NZ_CP017945.1\|WP_100003812.1\|150039_151320_-\|replication-initiation-protein-RepC	unknown	unknown	gnl\|CDD\|184349
NZ_CP017945.1\|WP_100003817.1\|156638_157013_+\|YbaN-family-protein	unknown	unknown	gnl\|CDD\|377291
NZ_CP017945.1\|WP_100003814.1\|154452_154851_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227933
NZ_CP017945.1\|WP_100003819.1\|159339_160275_-\|carbohydrate-kinase	unknown	unknown	gnl\|CDD\|238917
NZ_CP017945.1\|WP_100003818.1\|158266_159343_-\|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC	unknown	unknown	gnl\|CDD\|236947
NZ_CP017945.1\|WP_100003813.1\|152482_153706_-\|plasmid-partitioning-protein-RepA	unknown	unknown	gnl\|CDD\|274585
NZ_CP017945.1\|WP_100003807.1\|138797_139982_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|168320
NZ_CP017945.1\|WP_100003871.1\|146889_148227_+\|SidA/IucD/PvdA-family-monooxygenase	unknown	unknown	gnl\|CDD\|226017
NZ_CP017945.1\|WP_100003822.1\|162138_163020_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_CP017945.1\|WP_100003816.1\|156134_156560_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017945.1\|WP_100003821.1\|161293_162139_-\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP017945.1\|WP_100003820.1\|160274_161297_-\|aminotransferase	unknown	unknown	gnl\|CDD\|225132
NZ_CP017945.1\|WP_100003872.1\|151478_152486_-\|plasmid-partitioning-protein-RepB	unknown	unknown	gnl\|CDD\|274586
NZ_CP017945.1\|WP_100003870.1\|142586_142802_+\|MbtH-family-NRPS-accessory-protein	unknown	unknown	gnl\|CDD\|225790
NZ_CP017945.1\|WP_100003810.1\|148230_148986_-\|4'-phosphopantetheinyl-transferase-superfamily-protein	unknown	unknown	gnl\|CDD\|225002
NZ_CP017945.1\|WP_100003815.1\|155275_155977_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP017945.1\|WP_100003873.1\|157030_158125_-\|hypothetical-protein	gnl\|CDD\|227684	COG5397, COG5397, Uncharacterized conserved protein [Function unknown].	1.28527e-148
NZ_CP017945.1\|WP_100003808.1\|141388_142411_-\|acetyltransferase	gnl\|CDD\|379237	pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	2.49786e-65
NZ_CP017945.1\|WP_100003809.1\|142842_146838_+\|non-ribosomal-peptide-synthetase	gnl\|CDD\|237108	PRK12467, PRK12467, peptide synthase; Provisional.	0
NZ_CP017945.1\|WP_100003811.1\|149009_149909_-\|alpha/beta-hydrolase	gnl\|CDD\|225375	COG2819, COG2819, Predicted hydrolase of the alpha/beta superfamily [General function prediction only].	1.54809e-50
NZ_CP017945.1\|WP_100003812.1\|150039_151320_-\|replication-initiation-protein-RepC	gnl\|CDD\|184349	PRK13824, PRK13824, replication initiation protein RepC; Provisional.	0
NZ_CP017945.1\|WP_100003817.1\|156638_157013_+\|YbaN-family-protein	gnl\|CDD\|377291	pfam04304, DUF454, Protein of unknown function (DUF454). Predicted membrane protein.	5.1132e-40
NZ_CP017945.1\|WP_100003814.1\|154452_154851_-\|hypothetical-protein	gnl\|CDD\|227933	COG5646, COG5646, Uncharacterized conserved protein [Function unknown].	4.03323e-16
NZ_CP017945.1\|WP_100003819.1\|159339_160275_-\|carbohydrate-kinase	gnl\|CDD\|238917	cd01942, ribokinase_group_A, Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.	3.18344e-46
NZ_CP017945.1\|WP_100003818.1\|158266_159343_-\|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC	gnl\|CDD\|236947	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC.	1.01407e-170
NZ_CP017945.1\|WP_100003813.1\|152482_153706_-\|plasmid-partitioning-protein-RepA	gnl\|CDD\|274585	TIGR03453, partition_RepA, plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error. [Mobile and extrachromosomal element functions, Plasmid functions].	0
NZ_CP017945.1\|WP_100003807.1\|138797_139982_-\|hypothetical-protein	gnl\|CDD\|168320	PRK05968, PRK05968, hypothetical protein; Provisional.	0
NZ_CP017945.1\|WP_100003871.1\|146889_148227_+\|SidA/IucD/PvdA-family-monooxygenase	gnl\|CDD\|226017	COG3486, IucD, Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism].	2.38845e-146
NZ_CP017945.1\|WP_100003822.1\|162138_163020_-\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	4.90777e-87
NZ_CP017945.1\|WP_100003821.1\|161293_162139_-\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	3.93303e-70
NZ_CP017945.1\|WP_100003820.1\|160274_161297_-\|aminotransferase	gnl\|CDD\|225132	COG2222, AgaS, Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane].	8.63313e-62
NZ_CP017945.1\|WP_100003872.1\|151478_152486_-\|plasmid-partitioning-protein-RepB	gnl\|CDD\|274586	TIGR03454, partition_RepB, plasmid partitioning protein RepB. Members of this family are the RepB protein involved in replicon partitioning. RepB is found, in general, as part of a repABC operon in plasmids and small chromosomes, separate from the main chromosome, in various bacteria. This model describes a rather narrow clade of proteins; it should be noted that additional homologs scoring below the trusted cutoff have very similar functions, although they may be named differently. [Mobile and extrachromosomal element functions, Plasmid functions].	2.51663e-117
NZ_CP017945.1\|WP_100003870.1\|142586_142802_+\|MbtH-family-NRPS-accessory-protein	gnl\|CDD\|225790	COG3251, COG3251, Uncharacterized protein conserved in bacteria [Function unknown].	6.56242e-12
NZ_CP017945.1\|WP_100003810.1\|148230_148986_-\|4'-phosphopantetheinyl-transferase-superfamily-protein	gnl\|CDD\|225002	COG2091, Sfp, Phosphopantetheinyl transferase [Coenzyme metabolism].	2.75458e-22

>NZ_CP017945.1|WP_100003813.1|152482_153706_-|plasmid-partitioning-protein-RepA
MLSPTEKDQSHRTGKKVRSLTRLVEADANLLSAQLQELRSRAFPPTAEKELRKFTSGEAAKLIGITDAYIRHLSLAGEGPEAEKTSGGRRLYSLDQVHEIRNYLAKSKKSYLPVRHGNEHMQVIAVTNFKGGSGKTTTAAHVAQYFAMRGYRTLAIDLDPQASLSALFGIQPEFDLEENDTIYGAIRYDDQQRPLADIIRKTYFAGLDIIPGNLELQEFEHDTPRILAEKRRGTERLFFSRIASALQTVDDRYDVVVLDCPPSLGFLTLSALCAARSVLVTIHPQMLDVASMSQFLHMTAGLLDVVEQAGGDADYDFFRYVITRYEPSDGPQGQIVGLMKSLFGERVLTNALLKSTAISDAGLTKQTLYEVGREYFTRATYDRAIEALDAVNLEIEDLVREAWGRSP
>NZ_CP017945.1|WP_100003872.1|151478_152486_-|plasmid-partitioning-protein-RepB
MNKRRDALKAMMTPINEGSQTEHRLAKPAQKSGSLKAMGLSLQSLSDDADEAQALREKLASGEHVIDIDPDLIDASFIRDRLDDTDTVDFEELKTSIEEHGQQVPILVRPNPRNDNRYQVAYGHRRLAALKAIGRPVKAIARDLSDEDLIVAQGKENLERKDLSFIERALFAARLEAHGIERHALMAALSVHKGNLSTMIALANSLPEDLIRAVGPAPKIGRPRWEQLSQLLQARNEYWKEGVDMERFFRLDSDARFALLLKSLTPKKKSGPYIYPLKSKEGQSFAKIEQNDGKTRVIIDEAITPEFGHYLIEHLPEIYAAFVRRETSEPRIRQL
>NZ_CP017945.1|WP_100003812.1|150039_151320_-|replication-initiation-protein-RepC
MNREMTTTPFGRRPMSHAMLEAQASARDCPATQVADKWKLFRTITEARPMLGVSDRALAVLHALLSFHKQAELDSETNLIVFPSNRELSMRAHGMAPVTLRRHLAALVEAGLIIRRDSPNGKRYVRRDQEGDVKTAFGFDLTPLVVRAGELEQFAASIRAEDLAKRLLRERVSLHRRDIAKMVIFAEEQELDGPWDAISERFMPLARPLLRGFDRLGLGTLAAALDDLRLDVEKLLEIHANFNKSTASDVQTERHIQNQNPDSSSDFEPGFRKDQGANAETGWNKEEETGTSEEIAIDESDRLRRSTSKLPPKAFPLGLILKACPDIVDYTLKGIENWPDLVQTANLVRVTLGISPDAWNQAIETLGANEAAIVVAAILQKGETITSPGGYLRALTDKARAGAFSTGPLLMGLLRVNQIKHEAQAG
>NZ_CP017945.1|WP_100003811.1|149009_149909_-|alpha/beta-hydrolase
MTVFPNSSPAMVGNTTFHDVASDQNGQTYRVFIYRPEGEAPEQGWPVLYMTDGNAVIGTAVDVMRAQANYPSGTNVGPGVIVTIGYPLDAAYDPLRRSWDLGPPPGQTYPPFFENSPEVKTGGAEEFLTFIEDQIKPVVEAALPVDRNRQSLFGHSFGGLFVLYSLFTRPSAFTTWIAASPSIYWENRAIDQFYSRFVTAHQTRENAELFLSCGEYETDRLAPFQVGAADEAERLAQRKITLNDIYSVELVDRLNDLPGRPIRAQFEIHPGENHMSLLPVAVNRAIQNAFAIRKQAQAG
>NZ_CP017945.1|WP_100003810.1|148230_148986_-|4'-phosphopantetheinyl-transferase-superfamily-protein
MLPCYPLTGLPDVSVSTMSHDDAYVDIWWWPYRGEMDWSKVSSVLSSDEQARAATFAFEKDAIAFMAGRHLQRSVLSLYTDIPAADLNIAAGLYGKPYLANAGGVTFNLSNAEGLAVFAISRQCTLLGIDAEPMETGFELATSSLFCSPSELEILSTLQGNERQALLLNYWTLKESLLKAVSTGLAAAPNELNIRLDRLTATILIDSALTRDDICWHHRLLHAPSGHLIAISAQLGQTNLILRQRKMPDPE
>NZ_CP017945.1|WP_100003871.1|146889_148227_+|SidA/IucD/PvdA-family-monooxygenase
MFANNDRTSQASGTLDLAGIGIGPSNLSLASLLDSVGNVRAHFYESRPDFDWHPGMMLPDVELQSSYLKDLVTPVMPTSPWSFISYLVAHKRLYAFLNAHYEAVPRREFAQYLAWVASRLKNLSFGSTVREVKFDKDQFVVQFDNGAISARNLVLGTGTTPFVPSWALPFLGEKCFHNSEAKRRLSSLNASRIAVIGGGQSGGEVVEALLNSKSTLKELNWFSRRHNFEPINDTAFSNQVFSPEYVYAYLNLNNDQKLEALKASILTSDGLSISTINAIYRRLYSLRYLEHRNIDAKLSPNRDVIQVEADKDGYRLIVRNRFDGGVEVAHADAIVLATGYQFRLPDALAGLQDRIQFDRNNRPVLNDDYCLNWNGPKQNRIFAQNAGRYSHGIADSQLSLMAWRSAHIINSLLGQDHFDLEPHDSQVNWLSSGHDTMGQSIAVDY
>NZ_CP017945.1|WP_100003809.1|142842_146838_+|non-ribosomal-peptide-synthetase
MNKLFAPDQANDPVVVDDLSHSVSDSFPLTLAQKRIWSLEQIGNTTVFPLQVLTLHWHTTVTFDQVQHALAKLAGRHSALRTRFRRFAGGRIEQLSNAGDVPSIETLGSESNPLSTIEAEEQRAAFVSRPFDLLNGLPSRCQLIVTAQGALTSTIVLHPIVCDDVALAILQRDLIAFVNDESLAPVDDNGLLRGTLEEAWLETADFIPALAHWRNLIGEEYNATTLPTRFNASGYAGANRCHVPFQLAATLWTSIKVYAEQQNLKADLLLSAAFAVLLARYSGTYSLQHGVLLSNRASDISRQTICRTEQILPLKLELTSRARVLDVCHAVASAIATGTHNLVPFERLVQEIQAHEEREQDAIVKSLFEFREPRTQSGLISGTLSALAPRSDVELALVLAPNESGGLDGLFDYAEDLYEPASIERAATHFGRILAEAVAGTGVRIKDIQLIAEGELDILSAPYGDDGINDDLPVHEHIAAHGARTPDKTAIIYADEVWSHSRLDQSANRLAHRLIKLGVGADISVAIAVKRSPEAIVGILATLKAGGAYIPVEPDHPTTRNHHILRDGGVKVILTHSWLLDRIPEGLDAVILELDKLDLSEEAETAPDVRIHKDQLAYIMYTSGSTGLPKGVAVEHGPLTHHMQNTSRVYGMSEASRELPFLPFSSDGGHERWMNPLMEGGSIILPDQPLWTPEETLTAMRKHGANNASIPTTYLQQLAEWADLTDSAPPMRLYSFGGEGLAQQTFDLLSKALKSEWLINGYGPTETIMTPMVWKVRAGQKFEGTYAPIGRAVGNRRVYVLDPDLNPCPIGVTGELYIAGEGMARGYIGKPDTTADRFIPDPFSKEGGRLYRSGDLTLWREDGTVEFVGRVDHQVKLRGYRIELGEIEAALLQQEGVGEALVVLRDDEATKQKMLVAYVVPKQGQELNIANIHSALEHTLPAYMVPSAIVPLKSMPINPNSKLDRFALPVPTPMKRNIVEPENAIEQEVLELWQQILKISPISVEDNFFAIGGNSLGAIRILSALRQRKPQNRTTIADLFNNPTIRSFAKIVEAGNDQAGSEVIVLRASGTKPMLYCFPGLLVSTREYVKLVDYLGADQPATGFICYSLSEQKQIGASVDEIIESYVDYIRRHSKGQPCYFLGWSWGGLLAYEAARRLGDEIDLRLITMVDVCDLGTEFAIGSIPRFKHGERDKLHGMVQDWLSRTAMRTEWDRLLGVMDADTYDQFLRFIGDEKDELPTDGPDISSREHTFWILIDNALIFRRHQLHPHNVPIHSWAADDSLNRGLNLIDWRRYSPRANPAEIISGTNHLHVIGSQAFHSRMAHRLKEAL
>NZ_CP017945.1|WP_100003870.1|142586_142802_+|MbtH-family-NRPS-accessory-protein
MSAAEISPETWPETWSVVRDWEDRYSVWPDDKALPVGWSKEPISGTRDECLEKIRQIWVDPRPLSLRQAMA
>NZ_CP017945.1|WP_100003808.1|141388_142411_-|acetyltransferase
MTLISNLARETRVEPFPVSTRFLITGSLLTPDRLQVSTASGAYTVSVQTTPEGLKLVLPDLTEADPITVLSCAVEFMTAQSHEPSVIGIGNMPASDFPLGTFEDNRLMIDPRAFWQWPAPWVAKPAYPHPQVHVLSNGQYHPKRPQKPVGVVYERYIPWLGQVLSFRVADPQTDLEDFHRWMNDEQVNVIWEDGGDRQKHLAILEERLHDPHMLALIGCFNGVPFGYFEVYWAKENRLGPYYDAQDYDRGWHVAIGEPAYRGKQWITAWLPSLMHFIFLDDPRTQRIVGEPRASHEQQIRNLDRSGFAKVKHFDFPHKRAMLVMLTRERFFGDRLWVPAS
>NZ_CP017945.1|WP_100003807.1|138797_139982_-|hypothetical-protein
MNKAMPPQEFNLEMPDDLFSPVDTAAFNAVSPPIFQTSLFTYDTYEAMEDVFAGRSRNYIYSRGDNPTVREFELLTARLEGAEDGRGFSSGTAAITATILSLVEAGDRVVAVQHLYNDIYRLFVKLLARFGVTVDFVDPSNHDEVRAALPGAKLLYLENPTSMVFELQDIETLTTMAKEYGVTTVIDNSWATPLFQKPIQHGVDIVIHAASKYLGGHSDTVAGVVVGPRDLIAKINSSTYPYIGAKLSPFEAWLLLRGMRTLKVRLMEHMRNGLVLAKHLQQHPDIALVRHPAFSDHPGKKTLTGFSGLFAFDLNPDIDVARFVNSLRHIRLGVSWGGPETLVVPAKAALQIPDRMTSFVRFGVNPQTIRFAVGLEEPEVIWNDIQQALQNAHL
>NZ_CP017945.1|WP_100003814.1|154452_154851_-|hypothetical-protein
MAKTDFKSVDEYIATQPEAAKDILERVRNTIRKALPTAEEVISYQIPAYKLRGAAILYFAGWKKHYSLYPANEQLVAFFKNDLAPYEVNNKGTIRFPLSRPIPLKLIERIAKFRAKEVAELDRIKAAALKKR
>NZ_CP017945.1|WP_100003815.1|155275_155977_+|hypothetical-protein
MNQFRFNILAATVIAGAGMAFFTLPAAAQSVTKQCSTQYNAAKEAGTLNGQKWPQFLSECSAKLKEDQPDADAAAPAAKTPAKKQAKETTTTKAKKTETAAAAPAGGMSAKAVTKECSTQYQAAKEAGTLNGQKWPQFLSACSDSLKSDDSDATVPDEPKPAATKTTAAKTTTKTTAAATTADGKPLSPGQVAFRARISECGEQWQKAKASNKTGGKTWPQYWSACNTRLKAE
>NZ_CP017945.1|WP_100003816.1|156134_156560_+|hypothetical-protein
MPIQDLVDSIATQANLDPQVAEKAAGTVLSVLQHEAPEQAASLFAKIPGATELAQSFDVMASGAQSGGFLSSVTSMLGGAAGEKVGALINGVAALKESGLTVDQIREAGAAVLAHAKESADPNLVDQLLDSVPGLRGHFGL
>NZ_CP017945.1|WP_100003817.1|156638_157013_+|YbaN-family-protein
MNGTKRTVYFALGWVMVALGFIGALLPVMPTTIFLIIAAWCFSRSSPRFEKWLLEHPVFGPTLVQWRNHGAVPKRVKWIACGGMVFGYGTFFYFARPAPILGGVVALFFIACAAYVVTRPSIAV
>NZ_CP017945.1|WP_100003873.1|157030_158125_-|hypothetical-protein
MQRIDHTYQVLYSELAQRTLDASFTSDFPISGRFITMESRGRRYWYFDTAKEGGGKNRRYVGPVDDEEITRRVENFKDLKSDARARRKIVSTLVREAYLPRPEPFVGEIVQTLAIAGFFRLRGVLVGTVAFQCYPAILGMRLPNAALQTADADFAQFHSISAAVGDALPPVLDVLRKVDPTFRVVPHQTDSRQSTKFINRSGYAVEFLTPNTGSVDYGNHPASMPALGGASAQPLRFLDFLIHQPVRAVMLYASGVPILVPAPERYAVHKLIVGSRRRNDADGTAKSRKDRLQSRILMEAMIESRQDEALADAYMEAWDRGVAWKEAIIESMRSYDENTQRLLKDCLAKGVARLGGEPNDYGLA
>NZ_CP017945.1|WP_100003818.1|158266_159343_-|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC
MSALELVNIRKRYGTVETLKGIDLSLASGEFLVLLGSSGCGKSTLLNIIAGLAEATDGDVHIGDRSVTGVHPKDRDIAMVFQSYALYPNMSVARNIGFGLEMRNVAAAERTQAVQKAARILQIENLLGRKPSELSGGQRQRVAIGRALVRDPQIFLFDEPLSNLDAKLRMEMRTELKRLHQMLGTTIVYVTHDQIEAMTLATRIAVMRDGQIEQLAAPDEIYNRPATRYVASFVGSPPMNMLDATVADGIAHIDGSLSSIPLPRELQESAGKARNVIVGIRPENLTLASGDDIGLAIEAKVVVVELTGPELVVTSTIGSQRLTASLPPRSQVTVGMLQRFSIDASALHVFDKVTEKRI
>NZ_CP017945.1|WP_100003819.1|159339_160275_-|carbohydrate-kinase
MRPLAVIGNVNVDLILGPADPWPTPGTEIMVDYDELRVGGSAGNAALTWEGLGLDFQIAANIGNDQFGEWLRQGFGAHARRWPVSPMGTTLSVGITHPSGERTFFTTRGHIGALSWPEVVATLDTERLKGGIVILCGSFLTDALIAQYDALFDWAAANDIQVALDTGWPIDGWTDANRAKARKWLSRCHLALFNEVETTRLATSVEPAEAARKLKALMPKDAIVVVKRGPDGALAVGSDDQLVSVPAPLVTVADTIGAGDVFNAAFLAALAGGQTLEHSLASGVRVASMAISTVPRRYDGQALQTIPEEAP
>NZ_CP017945.1|WP_100003820.1|160274_161297_-|aminotransferase
MSMTSQTSKPAGLVAIEKEMARQNADAIASFEAAAPLAVTIAQSLRKTGRLLLLGMGGSHAVGRAVEPLYRSLGIDAIALPLSEQLGQPLSLSGKTVLVTSQSGESAEVLRWFAEAGVPSDTFGLTLEGGSTLARTVPSLIGAGGTENAFAATRSLTVSFALHLAVLSALGNDPAAALAILNWQRKPEVAAAVAALSGVSAVVTSGRRMQGVAEAIALGLTELSRIPCFSLEGGQLRHGPMEMLGPKVGVVLFRAKDATSELVARMTLSALEAGSPVVMFDASGEPAIDGVATIDTGAASGIAAVFALLPAAQHFMLGFAGARVADLGTPVRTTKITRSE
>NZ_CP017945.1|WP_100003821.1|161293_162139_-|carbohydrate-ABC-transporter-permease
MERRSLTAAILVHLAALLLLVVILAPVVWLFIMSISSTPDLIAKPLHWWPDTIDLSRYGVLLSSVVNSAGQAFVASLFNSLKVAGMATVAALIVAIPSAWAVSRTPSVGWSLYAVIATYMLPPVALAVPLYMALSWIGLLNNVFGLALVYLTILAPFTTWLLKSGFDSIPREIESAATMDGARLDQILRLITLPLAAPVMATAALFAFLLAWDEFFYALLFTSDQRAKTLTVAIADLAGGRVSDYGLIATAGVLAALPPLLIGLFMQRALISGLTSGGVKG
>NZ_CP017945.1|WP_100003822.1|162138_163020_-|sugar-ABC-transporter-permease
MTSNWITTRAWFLMLPLLIVMVAVIGWPLIDTVRLSFTDAKLVGTEGSFVGFDNYVKILSGTNFQRTLVTTFWFAVLSVALEMVIGVLAALLLNQQFYGRSVLRALMILPWALPTVVNATLWRLIYNPEYGALNAALTQMGFIDAYRSWLGEPNTALASLILADCWKNFPLVALIALAALQAVPRDITAASMVDGAGAWSRFRFVIMPYLAGPLMVALVLRTIEAFKVFDIIWVMTRGGPANSTRTLSILVYQEAFSFQRAGSGASLALIVTLLVTVLAVAYAALIRKSAGAS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP017945_1	1.1\|153846\|55\|NZ_CP017945\|CRISPRCasFinder	153846-153900	55	NZ_CP017945	Phyllobacterium zundukense strain Tri-48 plasmid unnamed5, complete sequence	153846-153900	0	1.0

1. spacer 1.1|153846|55|NZ_CP017945|CRISPRCasFinder matches to NZ_CP017945 (Phyllobacterium zundukense strain Tri-48 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

caccaacttcgccccatcggacattcaaatgggattcgcaggaggcgcatcccgt	CRISPR spacer
caccaacttcgccccatcggacattcaaatgggattcgcaggaggcgcatcccgt	Protospacer
*******************************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 1437

Vibrio_phage(100.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_100003692.1\|399_1437_+	L-threonine 3-dehydrogenase	R9TPW0	Vibrio_phage	2.2e-16	71.2

DBSCAN-SWA_2

11557 : 15955

uncultured_Caudovirales_phage(75.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_100003700.1\|11557_12304_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	4.3e-91	72.9
WP_100003701.1\|12260_12683_-	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	1.8e-46	67.9
WP_100003856.1\|12679_13387_-	aquaporin family protein	NA	NA	NA	NA
WP_100003702.1\|13397_14330_-	GNAT family N-acetyltransferase	A0A2H4J8A6	uncultured_Caudovirales_phage	2.0e-24	42.6
WP_100003857.1\|14322_14679_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_100003703.1\|14926_15955_+	glycosyltransferase family 2 protein	A0A075B8F6	Enterobacteria_phage	2.5e-52	37.8

DBSCAN-SWA_3

26537 : 27464

uncultured_Mediterranean_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_100003714.1\|26537_27464_-	glyoxylate/hydroxypyruvate reductase A	A0A1B1IVB5	uncultured_Mediterranean_phage	1.1e-06	25.3

DBSCAN-SWA_4

33131 : 40537

Streptococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_100003722.1\|33131_35849_+	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	4.1e-115	38.3
WP_157929639.1\|35909_36620_-	DUF861 domain-containing protein	NA	NA	NA	NA
WP_100003724.1\|36729_38223_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_100003859.1\|38460_39471_-	ATP-binding cassette domain-containing protein	Q6GZ03	Mycoplasma_phage	6.9e-07	33.0
WP_100003725.1\|39484_40537_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.4e-10	25.8

DBSCAN-SWA_5

49193 : 51707

uncultured_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_162293282.1\|49193_51707_-	copper-translocating P-type ATPase	A0A218MNH6	uncultured_virus	1.4e-96	35.0

DBSCAN-SWA_6

101968 : 103306

Acanthocystis_turfacea_Chlorella_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_100003867.1\|101968_103306_-	nucleotide sugar dehydrogenase	M1HZW8	Acanthocystis_turfacea_Chlorella_virus	3.2e-36	30.9

DBSCAN-SWA_7

106835 : 108725

Planktothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_100003783.1\|106835_108725_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.8e-23	31.1

DBSCAN-SWA_8

135663 : 136443

Planktothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_100003805.1\|135663_136443_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	7.9e-19	32.4

DBSCAN-SWA_9

142842 : 146838

Tupanvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_100003809.1\|142842_146838_+	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	5.6e-60	23.7

DBSCAN-SWA_10

150039 : 153706

Ochrobactrum_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_100003812.1\|150039_151320_-	replication initiation protein RepC	L7TKN6	Rhizobium_phage	2.7e-16	26.0
WP_100003872.1\|151478_152486_-	plasmid partitioning protein RepB	A0A240F4U0	Ochrobactrum_phage	5.5e-49	38.3
WP_100003813.1\|152482_153706_-	plasmid partitioning protein RepA	A0A240F4U1	Ochrobactrum_phage	5.8e-117	53.9

DBSCAN-SWA_11

158266 : 159343

Mycoplasma_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_100003818.1\|158266_159343_-	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	Q6GZ03	Mycoplasma_phage	5.2e-21	41.6

DBSCAN-SWA_12

165781 : 167110

Mycobacterium_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_100003825.1\|165781_167110_-	aspartate aminotransferase family protein	A0A1I9S933	Mycobacterium_phage	1.5e-06	27.9

DBSCAN-SWA_13

172453 : 173236

Planktothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_100003875.1\|172453_173236_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	9.7e-09	25.1

DBSCAN-SWA_14

181250 : 188384

Organic_Lake_phycodnavirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_162293283.1\|181250_182765_-	ATP-binding cassette domain-containing protein	F2Y2R6	Organic_Lake_phycodnavirus	1.0e-09	29.8
WP_100003840.1\|182891_183872_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_100003876.1\|184135_185176_+	LacI family DNA-binding transcriptional regulator	C6ZCU4	Enterobacteria_phage	3.9e-21	28.5
WP_100003841.1\|185172_186525_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_100003842.1\|186527_188384_-	sensor histidine kinase	Q8QKV7	Ectocarpus_siliculosus_virus	7.4e-07	34.8

DBSCAN-SWA_15

193701 : 197144

Amsacta_moorei_entomopoxvirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_100003847.1\|193701_195222_-	sugar ABC transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	2.4e-11	24.9
WP_100003848.1\|195290_196289_-	rhamnose ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_100003849.1\|196340_197144_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	7.4e-20	29.8

DBSCAN-SWA_16

205580 : 206069

Acanthocystis_turfacea_Chlorella_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_162293284.1\|205580_206069_+	RidA family protein	M1I5B0	Acanthocystis_turfacea_Chlorella_virus	3.5e-25	40.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP017940

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP017940_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017940_1

1865423-1865517

Orphan

Consensus_repeat	Method
AGGGACAACAGGTGTCACCATGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017940_1

>merge|NZ_CP017940|1|1865423-1865517|CRISPRCasFinder
AGGGACAACAGGTGTCACCATGATTTGGACAACAGGTGTCACCATGATCGTTTGCGACCGGCAGCAGTTCATAGGGACAACAGGTGTCACCATGA

>NZ_CP017940|1|1|1865423-1865517|CRISPRCasFinder
AGGGACAACAGGTGTCACCATGA	TTTGGACAACAGGTGTCACCATGATCGTTTGCGACCGGCAGCAGTTCAT
AGGGACAACAGGTGTCACCATGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017940.1\|WP_100001166.1\|1873552_1875223_-\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|130902
NZ_CP017940.1\|WP_099999112.1\|1871331_1872255_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP017940.1\|WP_099999114.1\|1875297_1877133_-\|type-I-secretion-system-permease/ATPase	unknown	unknown	gnl\|CDD\|226969
NZ_CP017940.1\|WP_099999113.1\|1872405_1873437_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017940.1\|WP_099999103.1\|1864543_1864861_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017940.1\|WP_099999100.1\|1862716_1862959_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP017940.1\|WP_099999098.1\|1860846_1862313_-\|DUF853-family-protein	unknown	unknown	gnl\|CDD\|283518
NZ_CP017940.1\|WP_133123857.1\|1865101_1865386_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017940.1\|WP_099999102.1\|1864248_1864431_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017940.1\|WP_099999108.1\|1866718_1867378_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017940.1\|WP_099999107.1\|1866446_1866638_-\|AlpA-family-phage-regulatory-protein	unknown	unknown	gnl\|CDD\|225848
NZ_CP017940.1\|WP_099999101.1\|1863009_1864206_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017940.1\|WP_099999097.1\|1860007_1860850_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017940.1\|WP_099999095.1\|1858161_1858578_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017940.1\|WP_133123856.1\|1868962_1869172_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017940.1\|WP_099999099.1\|1862335_1862629_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017940.1\|WP_100001164.1\|1869423_1870362_-\|lipid-kinase	unknown	unknown	gnl\|CDD\|183857
NZ_CP017940.1\|WP_099999109.1\|1867374_1868595_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271182
NZ_CP017940.1\|WP_100022262.1\|1858699_1859707_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017940.1\|WP_099999111.1\|1870578_1871307_+\|DUF2270-domain-containing-protein	unknown	unknown	gnl\|CDD\|227817

Protein	Function_ID	Function_description	E-value
NZ_CP017940.1\|WP_099999107.1\|1866446_1866638_-\|AlpA-family-phage-regulatory-protein	gnl\|CDD\|225848	COG3311, AlpA, Predicted transcriptional regulator [Transcription].	2.51104e-13
NZ_CP017940.1\|WP_099999112.1\|1871331_1872255_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	5.54079e-38
NZ_CP017940.1\|WP_100001166.1\|1873552_1875223_-\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	1.26077e-107
NZ_CP017940.1\|WP_099999098.1\|1860846_1862313_-\|DUF853-family-protein	gnl\|CDD\|283518	pfam05872, DUF853, Bacterial protein of unknown function (DUF853). This family consists of several bacterial proteins of unknown function. BMEI1370 is thought to be an ATPase.	0
NZ_CP017940.1\|WP_099999114.1\|1875297_1877133_-\|type-I-secretion-system-permease/ATPase	gnl\|CDD\|226969	COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only].	0
NZ_CP017940.1\|WP_100001164.1\|1869423_1870362_-\|lipid-kinase	gnl\|CDD\|183857	PRK13057, PRK13057, lipid kinase.	8.35025e-167
NZ_CP017940.1\|WP_099999100.1\|1862716_1862959_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	3.43743e-10
NZ_CP017940.1\|WP_099999109.1\|1867374_1868595_-\|site-specific-integrase	gnl\|CDD\|271182	cd00801, INT_P4_C, Bacteriophage P4 integrase, C-terminal catalytic domain. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements. The P4 integrase mediates integrative and excisive site-specific recombination between two sites, called attachment sites, located on the phage genome and the bacterial chromosome. The phage attachment site is often found adjacent to the integrase gene, while the host attachment sites are typically situated near tRNA genes. This family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	1.15936e-50
NZ_CP017940.1\|WP_099999111.1\|1870578_1871307_+\|DUF2270-domain-containing-protein	gnl\|CDD\|227817	COG5530, COG5530, Predicted integral membrane protein [Function unknown].	7.16448e-93

>NZ_CP017940.1|WP_133123857.1|1865101_1865386_-|hypothetical-protein
MQLDLFTHRKPATVHAFPLDRRRKLVNDAAEALNAKSYSQGKAHWTRLVNRIRKEMLASGLSVQMIESEIAAFADAVSRELNISQHYRGSDGAA
>NZ_CP017940.1|WP_099999103.1|1864543_1864861_-|hypothetical-protein
MSDDTQPKRGVVVSMATAKSLTFAEAVSDQELARDRIKDPAQWQQEISQSAYAADFPILAAAVIEQGLPPSLFRALCQTLLENRWIADAIARDIPNLDKGAPDAN
>NZ_CP017940.1|WP_099999102.1|1864248_1864431_-|hypothetical-protein
MIEDAEDAATARVKAIITSDEGKKFRTLAFYVSFETTNTPEQFQAIVRSFLEDTEAGKNT
>NZ_CP017940.1|WP_099999101.1|1863009_1864206_-|hypothetical-protein
MPRLKNIQNRPRNTEVSAIEDEISTLTNKRADIDARKAAALRAADEAREQRKLALIDSADTSIDQFNQEIARWEGEVSTYDSVVAEIDQLMFSARERLQAAQAADQRAKNAGTLDKIADDIEKFAQDLDAALKPVGVIISKMRKTLPEDLAVYNQGARPDGREERHGHASAREIVSALLAESIAHVAPETFDYGVNFKRQSALFRVDITDAWPGVRIERSEVPAPASEAARLLVIDRLRNRAKAIRQGKAPAEILGTPIYTPVVQQPETHVRLFVVKNFSYIKDELGRLTLEAKNSTIDLDVAVAKAAIEMGYALRLDTDEGKQAHDAHQESLKVYRPHNSSLSREDCEPLGNVFGFKLSDQPSGWELSSASPRGGRTPDGTVINPERRIPEFSSEAD
>NZ_CP017940.1|WP_099999100.1|1862716_1862959_+|helix-turn-helix-transcriptional-regulator
MVMSVAQIRAARGLLGWSQQQLAEAAGVGRATIADFETGKRTPYARTIEEMQRTLESAGVIFLESGQAVTGGEGVRLSNE
>NZ_CP017940.1|WP_099999099.1|1862335_1862629_-|hypothetical-protein
MPSISEKASTSPFTEAAALPSLIGFHGDRLAQVDIASGQDGLLQDAFAAEQSALEELLQYTPRDLAEVRTKTAYFLEHLDFLGCEDPRMVMFLRAMV
>NZ_CP017940.1|WP_099999098.1|1860846_1862313_-|DUF853-family-protein
MKLELGITASGTAINLPLKFANRHGLVTGATGTGKTVTLQRMTEEFSRNGVPVFAADVKGDLSGLAASGDDAGDAAWRTRAMGREFASNRFPVEFWDIFGRRGLPIRTSVQEMGAQLISRMLGLNETQQGAIEIAFRIAQKERAYMLTLDDLRWTLSDMLDNREHVCKEHGNVTAASISAIQRNLLALEAQGGANLFGEPPFDILDFIQTNADGRGVINLLHADQLMEAPKLYATFLLWLLTELFRRLPEAGDLNKPKLVFFFDEAHLLFNEAPKSLVQSIERLVRLVRSKGVGVYFVTQSPADVPDTVLAQLGNRIQHALRAYTPSDQRNVRAAANAFRPNPRVDVKAEITTMGVGEALISLLQDNGVPRQVEKVAIIPPSAQIGPISGLERETMITGSGMKQKYGAEMESFEASHAFGHRMKDQRGISYDSTAVAQPYEDRLYLRHVPKLEAADEDQKRPSLAMTLVRVLFWGAFALGGLNFAGLF
>NZ_CP017940.1|WP_099999097.1|1860007_1860850_+|hypothetical-protein
MLEIRYKLQYTGDAADDHRLPAHDGATSLEGITWSFALLGNYLATGDIRKRGNLDKRVRFYLAPASRGSFTNEVIAFVTEPQSLFLTSILGSVAVGAITTAFTGFVKHAVTKVCGLQDDDHAQFMRVLDRFPSGDLEANFDAIEPAMSRAHNVIGSGAAELNIIKGRTQLLKLDTITKSYVNSNFENPENTIRTVSVGALNANTGNGRVYDVETKKTIPFTVDKEPRPGTYAVLSSSLDRYIGGLPSNIKVTCREIYSHDDRIKKLKIFSANNLKSSEHG
>NZ_CP017940.1|WP_100022262.1|1858699_1859707_-|hypothetical-protein
MEHKCERREHRIDGPEVAMIAFAGIVVAFGIWAIYQIITGEIGTFTERTETVTKLGLFVAGVIGLPLAVWKGMLDHRQTREALRQGERVQQQMEYTEKQFKLTERQIAAAEETNLASILERSSALIADNQSEAQKMAGTAFFHYVATAQTETFRFEAIDLLSEFVADRDYDERTIRTAIHYLDEIGKKRGKRIKVKVDVKDKDYPIFYENLTGVTYKNCDFSGKRFNAGGLNYFEECKFARSLISYPLRILRGASFLDCEILHINSSGDAAIEFHNCDFTGCEHIVVTLKPVFSGCYFDLDNPPSDYVLKMFGNNLTGLRDFEIDEFKRPEVFDE
>NZ_CP017940.1|WP_099999095.1|1858161_1858578_+|hypothetical-protein
MTPNPLPKKKSKRKSHHTERYRGSKLLVERWTNAKAAHVAFLTGKGVPSTEIARILNDGVHPATIRAMWRRWRLPMAPTGGRHPAAVPINLYADERGLLAKRAKKLDVTPEEYLRRIAVCAISDDLYAAVTDGKFDKK
>NZ_CP017940.1|WP_099999107.1|1866446_1866638_-|AlpA-family-phage-regulatory-protein
MELLTIKEVAKRLSIGRTALWLLTKEADFPKPLQVTVGRKAFVAAEVDKWIASRIAQRDKVAA
>NZ_CP017940.1|WP_099999108.1|1866718_1867378_-|hypothetical-protein
MTENFKYSDEMRARLAATLGRSSEHREVSHVERIVTEWVSHNEKHIQADLARNARIATAAENLLLELDLDRDENDDDRERDFAEDGDPVTLRGHLLVAIDFLDFVKKEHENLIPKGRPSVLPRLLSTRLLEFWDNSGRRIARSSTTTKDAPDIQTPSGPLVRFLIAATEPVLQHKVPLGAAEHAIRLFYPRRRNEDDEKSTEFFRTLMTELHGESTAKK
>NZ_CP017940.1|WP_099999109.1|1867374_1868595_-|site-specific-integrase
MAGRKNLTARFVETVKVDVRTDYWDDVVRGLVLRVSPTGVKSWTVVYHRESDGAKRRVTIGKFPAIDLAKARAKALGAVTAVSDGEDPAGKKRARRDSMTVRELGALYVEKYAKRNKRTWAEDERLLKVEVYPEIGDMKALAVKRRDILDIIESKADAGFLAQSTQILAVVRKAFNWAVENDYLESSPVIGVKPRAKPTRRERVLSDDEIRTLWKALSEVPILSDTVSIFRLLLLTGQRSGEVCGIVRSEIDLEKAIWTIPGVRTKNGLTHVVPLSDEALAIVAAALETVDEEGNASLFSRIGNSIEPNAVAQAARLKLQLLGMPWTPHDLRRTVATGMAGIGVMPHIVEATLNHISGFRAGVAGVYNRAAYEPEKRRALDMWAEHIIAIVKSKSSKIVDIAGARR
>NZ_CP017940.1|WP_133123856.1|1868962_1869172_-|hypothetical-protein
MNLISQATGLLSAVILYWGSFGVKWEGRTIKGTSPRELLIESLQFHLGWIGCLFAVIAIGCQTYLTLRA
>NZ_CP017940.1|WP_100001164.1|1869423_1870362_-|lipid-kinase
MTGTLHKRALLIVNPNARSGKRPIAPVREMLESGGLTLVDAAPTDGETLSNVISRMRDACDLVIIGGGDGTLNSAAAGLVDTGLPLGVLPLGTANDFARTIGIPADPHDAARLILSAAPQPIDLGEVNGHLFFNVASIGFSAELAGELTEKAKKRWGKLGYAIVAARLLARSRLFTAYVEHDGSVDEIRTMQVSVGNGRHYGGGMTVEQTATADDGRLDFYSLEVDHWWRLLALLPSLRKGTHGKWDDVRAFHTTEVIVKTSKPRAVNTDGDLTTWTPAHFRIREKAIRVFAPATENRDFGSKRNVRASEHS
>NZ_CP017940.1|WP_099999111.1|1870578_1871307_+|DUF2270-domain-containing-protein
MNEAQEEEQQPGGETSTKWSAPPFPATSAEYITVLAHYHRAEMGRMAGWRDRIDRTTNWAITGVAAMLSLSLSTPTSHHGVLLFAMVLVQLLLLIEARRYRFFDVYRGRVRRLEKNYFAQIMAPLPNPDSGWARPLGQDLRRPQFLISTRAAMARRLRRNYLWMFLILLLAWVLKISTPKLQDGEVERDVAHSLQEIVANAAFGPIPGWTILLLVIAFYCWLAYAALLIGDPDEKQHGEVHV
>NZ_CP017940.1|WP_099999112.1|1871331_1872255_-|response-regulator-transcription-factor
MSVSFAAEVHGFNEIHNASEHISIVVIDCQTLSRSCLIRILRGELPDVVIHDIATSDELVGIIEKHINLAVINIENCCMTDAWVAVNLAYIHQLRPETSLMLLTQLDETSITDAIVSEVSRLGVRGYTTNTAPVEVVLAAIRLILAGGAYYPRSVLIDDGECSNSVSAENTGPLSLPANARGDESLDTADTAMIGFTERERQVLATLRRGLPNKIIASELDLSENTIKVHISHIMRKLNATNRTEAVVFSQQYGSAGAKGNNGNGNGNGAMLRPPPKANRNEAFLASLCLLCLTFLNEFSAFIAMGV
>NZ_CP017940.1|WP_099999113.1|1872405_1873437_-|hypothetical-protein
MFFSDKGTRDLLPLIELHLDEIPGPAAEFDGDPAPAGNIPPQVVPQAMPPAADLPEVEEHADENPETFSNRDPAPANMHIPEARGDTDTVHEISIPLDQSFFAGNPVMFTYRGATGELEHNEGAASAALSSQVADGPSPDAAGVPSTLDDAHTINVTQFAAVEQDASIFVSGYVGEVVARLHIDQSLVMDQDVDIAFTIDGDGHFSVLIDQDMRIDQDIWIDINIYDEDGVLYVDVFLRDAVEVEQDTAIDIEISDGPPGGTVEVNQDLELDQDVHVQIDIEDDLEERYIIKTSVDVIQTVDADETAIVGITERDGEIDLDVDAMQTAFVDQETIVHADFTLV
>NZ_CP017940.1|WP_100001166.1|1873552_1875223_-|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit
MLRLARRAGIIIKQGVAATIAELHSKLLDPVRRFITQVFSAIHTFAAGTSSAVKRSLAIVTAELHLRLSAFAKGRGFARHRALALPAANDTLDRSKSAFFAVGSFASGAGAQTAPRRAVARPKPSGTPYDHLRPLALSAFAIVGIFIIGFGTWAAYAPLESAAIAGGAIEAETSRKTIQHLEGGIVGRILVNDGDEVTAGQPLIRLDDMRAQANVLALQMQLWEAQALEARLLAERDGRATIQFPPRSGPAAKNDRKLAEIMGGQIKIFDARRNLQKSQIDVVQQRKAQTEQEIAGLEFQAAAARERASIIKEEVAGVEPLVAKGLQTKVRLLKLKREQAEIDGRMGDLQSQISRAGQSIGESQAMIFKLESDHNSEVAQSLRETQALVSQLGERIQAATDILDRTVVRAPEAGTITDLRIHTPGGVVAAGEPLLDLVPRQDRLIVRALVKPEDIDLVRPGLEAHVRLLSYKHRRVPPVDGVLTYVSADSLVDKETERPYYTARVRIDEASLHNLPEVEIMPGMPVEVMIKTGEFTVAHYMFRPVLDSFNRAFRED
>NZ_CP017940.1|WP_099999114.1|1875297_1877133_-|type-I-secretion-system-permease/ATPase
MALSWMKTRATTEIERAFDLCKPSLLMVFVLSFFVNLLALTVPLYLLQIYDHVLSSRSLDTLIMLTLIVILALAVNAILDALRRSMLNRIGSWLDDRLQAPVLIAAVQSALRSDSAAAAQAWRDIGGLRSFFAGTACTALFDLPWTPIFILAMILVHPLLGAIGLGASVILIALALLNEMVTRKLFARSSAAWVESQHRFGSLLRNVEVISAMGMLPGVARLLHDEQTRAKEAQLAAAARGTVIQAIARFIRLLAQVIVMACAAWLVILHDISPAAIFATSILLGRSLGPVEGAINTWKAVTSARLSYDRLRKILAAAPKHRKTMQLPRPNGQLSIEQLTFMPAGAEAPALRRLTLVINPGEVLGVVGASGAGKSTLGRLIAGTIAPTAGHVRLDGADVAIWLASGGHRHFGYLPQDIELIGGTVRENISRLQEANADEVIAAASMVGMHDMIMRLPMAYETNIGDGGMRLSGGLRQRLGLARAFFGHPRLLVLDEPNASLDAEGEDALREAIQEMRGRGSTIIVIAQRLSILNMADKVLVLDNGTINAFGNRREIAEKIRNGRTSIPVRRPRITAAARSVRRLGSKASSESSETTATGSVVRETSGGNAP

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1532938 : 1548766

uncultured_Mediterranean_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_100001088.1\|1532938_1533757_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	6.5e-32	35.3
WP_099998828.1\|1533749_1534475_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	1.2e-42	46.5
WP_099998829.1\|1534666_1534894_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	1.2e-07	65.9
WP_099998830.1\|1534957_1535557_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_099998831.1\|1535553_1536378_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	6.8e-45	41.2
WP_099998832.1\|1536446_1537730_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.1e-107	47.7
WP_099998833.1\|1537745_1538504_+	5'/3'-nucleotidase SurE	NA	NA	NA	NA
WP_099998834.1\|1538500_1539154_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	5.2e-16	36.6
WP_099998835.1\|1539279_1540647_+	peptidoglycan DD-metalloendopeptidase family protein	I3PV24	Clostridium_phage	4.9e-16	36.3
WP_099998836.1\|1540765_1541020_+	type II toxin-antitoxin system HicA family toxin	R4JMD3	Burkholderia_phage	1.8e-17	53.6
WP_099998837.1\|1541016_1541346_+	type II toxin-antitoxin system HicB family antitoxin	K7PJX6	Enterobacterial_phage	2.9e-15	39.6
WP_099998838.1\|1541362_1542226_-	ATP-binding protein	NA	NA	NA	NA
WP_099998839.1\|1542386_1542728_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	3.9e-07	33.7
WP_099998840.1\|1542790_1545061_+	protein translocase subunit SecD	A0A1B1IVP7	uncultured_Mediterranean_phage	5.8e-46	37.1
WP_099998841.1\|1545062_1545452_+	hypothetical protein	NA	NA	NA	NA
WP_099998842.1\|1545479_1546316_+	phytoene/squalene synthase family protein	NA	NA	NA	NA
WP_099998843.1\|1546318_1547728_-\|tRNA	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	NA	NA	NA	NA
WP_099998844.1\|1547818_1548766_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	8.4e-07	32.6

DBSCAN-SWA_2

1780428 : 1790843

Brucella_phage(28.57%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_100001145.1\|1780428_1781448_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	8.7e-34	30.7
WP_099999021.1\|1781579_1782050_-	YbaK/EbsC family protein	NA	NA	NA	NA
WP_099999022.1\|1782046_1782856_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_099999023.1\|1782848_1783646_-	TatD family hydrolase	NA	NA	NA	NA
WP_099999024.1\|1783652_1785200_-\|tRNA	methionine--tRNA ligase	A0A1V0SHR2	Klosneuvirus	1.6e-103	40.3
WP_099999025.1\|1785298_1785682_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_099999026.1\|1785681_1785918_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_099999027.1\|1785979_1787032_-	DNA polymerase III subunit delta'	A0A1U9WR94	Streptococcus_virus	1.2e-06	32.1
WP_099999028.1\|1787028_1787700_-	dTMP kinase	M1PSC7	Streptococcus_phage	1.3e-30	39.6
WP_099999029.1\|1787741_1788026_-	putative addiction module antidote protein	A0A141GEX5	Brucella_phage	3.1e-21	54.1
WP_100001147.1\|1788028_1788319_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A141GEX6	Brucella_phage	5.3e-29	62.1
WP_100001148.1\|1788376_1789588_-	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA
WP_100001150.1\|1789574_1790843_-	septal ring lytic transglycosylase RlpA family protein	F5B3X9	Synechococcus_phage	4.1e-17	52.4

DBSCAN-SWA_3

2075419 : 2114266

Sinorhizobium_phage(25.0%)

capsid,head,tRNA,terminase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_099999297.1\|2075419_2076769_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_099999298.1\|2077370_2077640_-	DUF1467 family protein	NA	NA	NA	NA
WP_099999299.1\|2077641_2078046_-	methylmalonyl-CoA epimerase	NA	NA	NA	NA
WP_099999300.1\|2078053_2079727_-	ribonuclease J	NA	NA	NA	NA
WP_099999301.1\|2079749_2080589_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA
WP_099999302.1\|2080602_2082027_-	NADH-quinone oxidoreductase subunit NuoN	NA	NA	NA	NA
WP_099999303.1\|2082047_2083553_-	NADH-quinone oxidoreductase subunit M	NA	NA	NA	NA
WP_162293147.1\|2083552_2085544_-	NADH-quinone oxidoreductase subunit L	NA	NA	NA	NA
WP_099999304.1\|2085551_2085860_-	NADH-quinone oxidoreductase subunit NuoK	NA	NA	NA	NA
WP_099999305.1\|2085859_2086492_-	NADH-quinone oxidoreductase subunit J	NA	NA	NA	NA
WP_099999306.1\|2086633_2087125_-	NADH-quinone oxidoreductase subunit NuoI	NA	NA	NA	NA
WP_099999307.1\|2087136_2088183_-	NADH-quinone oxidoreductase subunit NuoH	NA	NA	NA	NA
WP_100001195.1\|2088200_2090282_-	NADH-quinone oxidoreductase subunit G	NA	NA	NA	NA
WP_133123846.1\|2090385_2090937_-	NADH-ubiquinone dehydrogenase	NA	NA	NA	NA
WP_099999309.1\|2090999_2092301_-	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA
WP_099999310.1\|2092369_2093551_-	NADH-quinone oxidoreductase subunit E	NA	NA	NA	NA
WP_099999311.1\|2093550_2094741_-	NADH-quinone oxidoreductase subunit D	NA	NA	NA	NA
WP_099999312.1\|2094783_2095392_-	NADH-quinone oxidoreductase subunit C	NA	NA	NA	NA
WP_099999313.1\|2095401_2095983_-	NADH-quinone oxidoreductase subunit B	NA	NA	NA	NA
WP_099999314.1\|2095973_2096339_-	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA
WP_099999315.1\|2096780_2097992_-	MFS transporter	NA	NA	NA	NA
WP_099999316.1\|2098131_2098668_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_099999317.1\|2098674_2099250_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_133123845.1\|2100054_2100780_-	hypothetical protein	NA	NA	NA	NA
WP_099999319.1\|2100787_2101306_-	hypothetical protein	NA	NA	NA	NA
WP_099999320.1\|2101376_2101583_-	hypothetical protein	NA	NA	NA	NA
WP_099999322.1\|2101971_2102727_-	hypothetical protein	NA	NA	NA	NA
WP_157929513.1\|2103313_2103490_-	hypothetical protein	NA	NA	NA	NA
WP_099999324.1\|2103591_2103798_-	hypothetical protein	NA	NA	NA	NA
WP_162293148.1\|2103935_2104913_-	hypothetical protein	NA	NA	NA	NA
WP_099999326.1\|2104971_2107629_-	hypothetical protein	A0A291AUM6	Sinorhizobium_phage	3.0e-33	35.6
WP_099999327.1\|2107639_2109271_-\|terminase	terminase large subunit	E4ZFM0	Streptococcus_phage	9.2e-70	32.3
WP_099999328.1\|2109270_2109660_-\|terminase	phage terminase small subunit P27 family	NA	NA	NA	NA
WP_099999329.1\|2109656_2109974_-\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_099999330.1\|2109976_2110396_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_099999331.1\|2110392_2110812_-	HK97 gp10 family phage protein	NA	NA	NA	NA
WP_099999332.1\|2110813_2111107_-\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_099999333.1\|2111103_2111727_-	hypothetical protein	NA	NA	NA	NA
WP_099999334.1\|2111723_2112062_-	HNH endonuclease	Q38456	Bacillus_phage	1.3e-18	47.8
WP_157929514.1\|2112061_2112658_-\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_099999336.1\|2112694_2114266_-\|capsid	phage major capsid protein	A0A1B1IQC5	uncultured_Mediterranean_phage	4.6e-18	25.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP017945

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP017940

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection