CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP024644	Komagataeibacter xylinus strain xylinus chromosome, complete genome	1 crisprs	DEDDh,csa3,DinG,WYL	4	3	8	1

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP024644_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024644_1

1563307-1563972

Orphan

Consensus_repeat	Method
ACGCTGNCCCNGACGCTG	CRT

13 spacers

The CRISPR arrays of NZ_CP024644_1

>merge|NZ_CP024644|1|1563307-1563972|CRT
ACGCTGGCCCCGACGCTGTCCCCGACGCTGTCCCAGACGCTGTCCCCGACGCTGTCCCAGACGCTGGCCCAGACGCTGGCCCTGACGCTGGCCCCGACGCTGTCCCCGACGCTGTCCCAGACGCTGTCCCAGACGCTGGCCCTGACGCTGTCCCAGACGCTGGCCCTGACGCTGGCCCTGACGCTGTCCCAGACGCTGGCCCTGACGCTGTCCCAGACGCTGGCCCTGACGCTGGCCCTGACGCTGGCCCTGACGCTGTCCCAGACGCTGGCCCTGACGCTGGCCCTGACGCTGTCCCAGACGCTGTCCCAGACGCTGGCCCCGACGCTGTCCCCGACGCTGTCCCCGACGCTGGCCCTGACGCTGGCCCCGACGCTGTCCCAGACGCTGTCCCAGACGCTGTCCCAGACGCTGTCCCAGACGCTGTCCCCGACGCTGGCCCCGACGCTGGCCCCGACGCTGTCCCCGACGCTGTCCCCGACGCTGTCCCAGACGCTGGCCCCGACGCTGTCCCCGACGCTGTCCCCGACGCTGTCCCAGACGCTGGCCCCGACGCTGTCCCCGACGCTGTCCCCGACGCTGTCCCCGACGCTGGCCCAGACGCTGGCCCCGACGCTGTCCCCGACGCTGTCCCCGACGCTGTCCCCGACGCTGTCCCCGACGCTG

>NZ_CP024644|1|1|1563307-1563972|CRT
ACGCTGGCCCCGACGCTG	TCCCCGACGCTGTCCCAGACGCTGTCCCCGACGCTGTCCCAGACGCTGGCCCAG
ACGCTGGCCCTGACGCTG	GCCCCGACGCTGTCCCCGACGCTGTCCCAGACGCTGTCCCAGACGCTGGCCCTGACGCTGTCCCAG
ACGCTGGCCCTGACGCTG	GCCCTGACGCTGTCCCAGACGCTGGCCCTGACGCTGTCCCAGACGCTGGCCCTG
ACGCTGGCCCTGACGCTG	GCCCTGACGCTGTCCCAG
ACGCTGGCCCTGACGCTG	GCCCTGACGCTGTCCCAGACGCTGTCCCAG
ACGCTGGCCCCGACGCTG	TCCCCGACGCTGTCCCCG
ACGCTGGCCCTGACGCTG	GCCCCGACGCTGTCCCAG
ACGCTGTCCCAGACGCTG	TCCCAGACGCTGTCCCAG
ACGCTGTCCCCGACGCTG	GCCCCGACGCTGGCCCCG
ACGCTGTCCCCGACGCTG	TCCCCGACGCTGTCCCAGACGCTGGCCCCG
ACGCTGTCCCCGACGCTG	TCCCCGACGCTGTCCCAGACGCTGGCCCCG
ACGCTGTCCCCGACGCTG	TCCCCGACGCTGTCCCCGACGCTGGCCCAGACGCTGGCCCCG
ACGCTGTCCCCGACGCTG	TCCCCGACGCTGTCCCCG
ACGCTGTCCCCGACGCTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024644.1\|WP_040000142.1\|1569031_1569304_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024644.1\|WP_139064324.1\|1558269_1558818_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024644.1\|WP_007396168.1\|1559782_1561033_-\|IS21-family-transposase	unknown	unknown	gnl\|CDD\|226950
NZ_CP024644.1\|WP_050800830.1\|1564228_1564558_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024644.1\|WP_007400612.1\|1561579_1561717_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024644.1\|WP_040000136.1\|1566660_1566921_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024644.1\|WP_157772003.1\|1561172_1561583_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024644.1\|WP_007400613.1\|1561713_1562634_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024644.1\|WP_040000141.1\|1568801_1569047_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024644.1\|WP_007400616.1\|1564611_1564905_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024644.1\|WP_007400607.1\|1557654_1557996_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NZ_CP024644.1\|WP_040000132.1\|1565327_1565588_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024644.1\|WP_040000138.1\|1567063_1567561_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225253
NZ_CP024644.1\|WP_083824526.1\|1565599_1566244_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|238045
NZ_CP024644.1\|WP_007396167.1\|1558940_1559786_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|366760
NZ_CP024644.1\|WP_007400625.1\|1567805_1568414_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024644.1\|WP_085949004.1\|1556680_1557427_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271177
NZ_CP024644.1\|WP_040000124.1\|1557992_1558223_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024644.1\|WP_034928378.1\|1554969_1556418_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB	unknown	unknown	gnl\|CDD\|235489
NZ_CP024644.1\|WP_083824527.1\|1566330_1566603_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|374243

Protein	Function_ID	Function_description	E-value
NZ_CP024644.1\|WP_034928378.1\|1554969_1556418_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB	gnl\|CDD\|235489	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB.	0
NZ_CP024644.1\|WP_007400607.1\|1557654_1557996_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	4.98497e-08
NZ_CP024644.1\|WP_007396168.1\|1559782_1561033_-\|IS21-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	3.77004e-37
NZ_CP024644.1\|WP_040000138.1\|1567063_1567561_-\|hypothetical-protein	gnl\|CDD\|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	1.31416e-05
NZ_CP024644.1\|WP_083824526.1\|1565599_1566244_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.11087e-12
NZ_CP024644.1\|WP_007396167.1\|1558940_1559786_-\|ATP-binding-protein	gnl\|CDD\|366760	pfam01695, IstB_IS21, IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.	7.61586e-69
NZ_CP024644.1\|WP_085949004.1\|1556680_1557427_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271177	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain. Rci protein is a tyrosine recombinase specifically involved in Shufflon type of DNA rearrangement in bacteria. The shufflon of plasmid R64 consists of four invertible DNA segments which are separated and flanked by seven 19-bp repeat sequences. RCI recombinase facilitates the site-specific recombination between any inverted repeats results in an inversion of the DNA segment(s) either independently or in groups. HP1 integrase promotes site-specific recombination of the HP1 genome into that of Haemophilus influenza. Bacteriophage Hp1_like integrases are tyrosine based site specific recombinases. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	1.79931e-15
NZ_CP024644.1\|WP_083824527.1\|1566330_1566603_+\|hypothetical-protein	gnl\|CDD\|374243	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT. YdaS_antitoxin is a family of putative bacterial antitoxins, neutralising the toxin YdaT, family pfam06254.	2.07787e-10

>NZ_CP024644.1|WP_007400613.1|1561713_1562634_-|hypothetical-protein
MTTQNRRDRYLDARRALALAVKRHDAQSDKEGLKDDDFKVDLDLAMARLLLTGIPPASEPQDSAARFSARYVPFLRPVLDPAPASPAYRGITVLPHPDGGVLLFATNARVMLIAHDRSGHVTEGGCCVVLSRATMDACNPPSPLELWFEGSREEVGTVPDYAMPGEVISCGMSMLVMPVGQPPDLDDPCNGGALYAAMIETDHWSGADRRMPAFLELKHIKASLTPDAPQAQPWAVTSVTQTAVAQAMAAVDPDQEVLVWDARVTDHQVTYIPRQRDDLLISFATARDPKKSPQIPAWVLRALEES
>NZ_CP024644.1|WP_007400612.1|1561579_1561717_-|hypothetical-protein
MIRIPDQQIDRIRDQLPTVGEVAGYTLFFCLLWGALVWIVVEVLP
>NZ_CP024644.1|WP_157772003.1|1561172_1561583_-|hypothetical-protein
MMEAMQLDLCDYIAGLPRQSAPEPQVNPLDLLPRRPKAWERTVAHIPAADVRLHICLMWTGVVVEQLRQGLRADMLLRSGKIDRCNMPADCPWPEPCRLVILTAAQVARIHNQWCLEITASERTQFTFRFADRQHV
>NZ_CP024644.1|WP_007396168.1|1559782_1561033_-|IS21-family-transposase
MIGLREVVLIQELKRQGLSISAIARQTGLDRKTVKKYLANGLETPAYAPRKPVASAAEPYRTYLLERMASYPGLSSRRLHREIRDMGYDGAYSSLTEYLRQIRPPLPRPYERRFETGAGVQAQVDFAEFQTVFTGEPGIVRKVWLFSMVLGHSRWLWGRFCPNQGLETVMRCHIAAFEAMAGCCTEILYDRMKTAVIGEDDAGVVTYNASLVALLAHYGSAPRACQPYRAKTKGKVERPFRYIRQDFFLGRSFHDLDDLNAQFDVWRADIANARAHATTGRIVQEHFAQEQPHLHPLPALRYDAVLSVERRISREGMVAVAGNYYSVPDTARRRVVEIQHHTHEVLIFEEGKLIARHPVLEGKNRKRIEPGHRKAPPVQHAEMLPTTPAVPILQRPLAFYGAVGERLANINAKGTA
>NZ_CP024644.1|WP_007396167.1|1558940_1559786_-|ATP-binding-protein
MMSVTERIRQSLLALHMARALETLDHTLGRLEKGEISAIEAIDDLLAEELNLREGRRISVALRTARLMPIKTIESFDFSFQPSLDRHRITALAQLEFINRAEVLHFLGPPGTGKSHLATAIGVAAVRAGRSVYRCSLAELLEALTRAEREGRLAEKIRFYTRASLLIVDEIGYLPITPGGANLFFQLVNARYEKGAMILTSNRGFAEWGEVFGDPVVATALLDRLLHHAVVVHIEGASYRLRQHADLIPEHTRAHANLMPPAAPKRRGRPPKHGAIDHLNG
>NZ_CP024644.1|WP_139064324.1|1558269_1558818_-|hypothetical-protein
MTEKKIETPMYLVPGRVTPEMEHRAAAVVFDRYGREILWTDFHAYMTAIGTPIQPCQPCADVKSVAWMTKASKHTPTVCRDVTVNVPYDRCNYDDLVFRTDMEVQLAARDEEIARLRVVEAEMHLLEEVCTFYANDEDRFIKADGNAEPYGMIPTDVGMKARSARARFMAREQAAQEAGGQA
>NZ_CP024644.1|WP_040000124.1|1557992_1558223_-|hypothetical-protein
MSDLSDHPILQGLEFGREIYSIEIHGNGRGEYVGITCEDDSPCRIVFRGSLVTENGRRIIRARGTQAWPKAGREGR
>NZ_CP024644.1|WP_007400607.1|1557654_1557996_-|helix-turn-helix-domain-containing-protein
MTQPPSTMEKRVDAHVIAERTGVPHRTILALAQRGEIPAAKIGRRWTFSPARIEAWIIEQESLNCQSRRVDSRAKHRKTASFAAIRGGRRSSFEVNDTEKAYAQLMQGKRKSA
>NZ_CP024644.1|WP_085949004.1|1556680_1557427_-|tyrosine-type-recombinase/integrase
MGSARTQGEGKAISNASIQRDLTALSRLLSFCCSIGWRTDNPVQAFDRTIIRERREPKRPPTRKEIQTAIDAAPPGIAGILTILAETGMRMNEAVMLERWQVDSKSRQVLLTKTKTSRPRTISWHTSGGNATRVLEEGAPSGFLYTSGTTGKPFANFSSNHAQVMRRIQRDNPLFRRFGVHDLRHAFAVRWLKEGGNIYRLSRHLGHSSVKVTEQNYLGFLTVEEQERVQFQAEQIFAAPTTNSTTLA
>NZ_CP024644.1|WP_034928378.1|1554969_1556418_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB
MSYTLEGRTGTWEIVVGLEVHAQVISHSKLFSGASASYGGEPNTHVSLVDAGFPGMLPVLNQECVAQAIRTGLGLRARINLESRFDRKNYFYADLPTGYQISQFTHPIVGEGTVEIELADGTVRHIGITRLHMEQDAGKSMHDQDPARSFIDLNRAGVALMEIVSEPDIRSPEEAGAYLRKLRQILRYLGTCDGNMEEGSMRADVNVSVRKAGEPFRTRCEIKNVNSIRYVMHAIEVEATRQIEVWEEGGEVDQETRLFDPARNETRSLRSKEDAHDYRYFPDPDLLPLVVEQAWVDELERGLPELPDDKRDRFVRQYGIPRYDASVLVAEQAIADYYEEVAKGRDARLAANWVTGDLFGALNRTGRTITDSPISAQALGGMLDLVSDKTINGKIAKEVFEDMLETGDSAAAIVERKGLKQVTDTGAIDAAVADVLARNADKVEEYRGGKDRLFGFFVGQVMKAMAGKANPAMVNEALKKVL
>NZ_CP024644.1|WP_050800830.1|1564228_1564558_-|hypothetical-protein
MTKMFLAAQGDILIQQIESLPAKLQDVAPENGRLIVAYGEATGHHHSFGATSGITLFREDGTSNGLFGITTAPVALEHQEHSTIMLPPGKFRFIQQRTMHSGIVQRVAD
>NZ_CP024644.1|WP_007400616.1|1564611_1564905_-|hypothetical-protein
MSGTDFTPIPPGELVGLLSAKEQEAAINMHHQFRTNFMAVAGYRTQGSLHAARFAARVADARLEDLERLVMGRFMAEGPEIEASLWARRQASASNPS
>NZ_CP024644.1|WP_040000132.1|1565327_1565588_+|hypothetical-protein
MPMTERIVFQPYAWGKTKRGTALLEARAPILCKSLDEARRRADKVARGDTSMAGAHVVRMEVDEEAGDYGEAEIIQIAGDVPSLGD
>NZ_CP024644.1|WP_083824526.1|1565599_1566244_-|helix-turn-helix-domain-containing-protein
MEDWATRLKRMRTAVRLSQAKAGKQLGIKGPSIAQWESGRSKPALDRLPDLADLYQVSLEELCGTDLGSPEAARRAAADAASAPETVKIAGCVAAADRVVIYNQDELQGEGINLPFRGYQGYVLRVTGESMVPRYKPNELVGFRLPGVTYPSLKMIGRDVVAKLEDGQILLKTLINGPSPETFALASVNPMVPPIFNPPFEWISPIDFHLVDWN
>NZ_CP024644.1|WP_083824527.1|1566330_1566603_+|hypothetical-protein
MRNEIVRKVVNAAGGPTAVASCLGIKMPSIYSWSRIPAEHVLTIARMSGISPHEIRPDVFGPEPRARNLRGRADPWWGAVCAHAEQRGAA
>NZ_CP024644.1|WP_040000136.1|1566660_1566921_-|hypothetical-protein
MASILVNLNVQHAVTLTKEEPQYSSQQISPQCLEMNLLVTPDGDKEGEALGYVNVQVQVNSPKKAFPDLSPNEMSQWLIDVLKRTL
>NZ_CP024644.1|WP_040000138.1|1567063_1567561_-|hypothetical-protein
MGLILILLVLSLPGIIAAVKGRSFFLWLIYGWLLFPVAMIHVLFARTGAQKIVHDWNTIEVEPPNPRRRRAKQEITTVEIHRTRIIIDYKDGAGEATQRTIVPQKLDFYVNKDNVVIITDIHAYCELRRAPRQFKYSRIQGAADAETGEDIPNIGRYLWLRRIWD
>NZ_CP024644.1|WP_007400625.1|1567805_1568414_+|hypothetical-protein
MGKKSDFWTHPQNRRAACLAMAIRHADAASYNYDADDVIEHAAMFGDYIMTGEVPSMDDKTVTTDGASEPAIGVHASSGTRFPESCLAAPVTKAGETDKNSADAGSVSKVENEKREIEKRLASAQKLGLRLVGLEIVDGSPSAEWIYRGPVDFVVTGIVQAAAEDISSRIGRVFDAGFIIRAVHYDADGFPCVSWSPVSAAA
>NZ_CP024644.1|WP_040000141.1|1568801_1569047_+|hypothetical-protein
MIAAAYRDTLCAVLQRKYGRVRHGAKTLAQSIEGSPRTVQKWIAGTSAPRGEELVKLMAECDELRDEIFRLVKEGKACPDE
>NZ_CP024644.1|WP_040000142.1|1569031_1569304_+|hypothetical-protein
MPGRMTIPRGIAIEYGRNFGLRYDRGQMPSVSLIWVRIYALRDGMAGIVLHFVGDRERLGQAHDEIRRLRRKCADQCKECPLLPGRQEPT

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP024644_1	1.4\|1563553\|18\|NZ_CP024644\|CRT	1563553-1563570	18	NZ_CP024644.1	1265510-1265527	2	0.889
NZ_CP024644_1	1.4\|1563553\|18\|NZ_CP024644\|CRT	1563553-1563570	18	NZ_CP024644.1	485576-485593	2	0.889
NZ_CP024644_1	1.7\|1563673\|18\|NZ_CP024644\|CRT	1563673-1563690	18	NZ_CP024644.1	2777133-2777150	2	0.889
NZ_CP024644_1	1.8\|1563709\|18\|NZ_CP024644\|CRT	1563709-1563726	18	NZ_CP024644.1	2465132-2465149	2	0.889
NZ_CP024644_1	1.9\|1563745\|18\|NZ_CP024644\|CRT	1563745-1563762	18	NZ_CP024644.1	570907-570924	2	0.889
NZ_CP024644_1	1.9\|1563745\|18\|NZ_CP024644\|CRT	1563745-1563762	18	NZ_CP024644.1	1140279-1140296	2	0.889
NZ_CP024644_1	1.9\|1563745\|18\|NZ_CP024644\|CRT	1563745-1563762	18	NZ_CP024644.1	2147417-2147434	2	0.889

1. spacer 1.4|1563553|18|NZ_CP024644|CRT matches to position: 1265510-1265527, mismatch: 2, identity: 0.889

gccctgacgctgtcccag	CRISPR spacer
gccctgaccctgccccag	Protospacer
******** ***.*****

2. spacer 1.4|1563553|18|NZ_CP024644|CRT matches to position: 485576-485593, mismatch: 2, identity: 0.889

gccctgacgctgtcccag	CRISPR spacer
gccctgacgcttttccag	Protospacer
*********** *.****

3. spacer 1.7|1563673|18|NZ_CP024644|CRT matches to position: 2777133-2777150, mismatch: 2, identity: 0.889

gccccgacgctgtcccag	CRISPR spacer
gccgcgacgctgttccag	Protospacer
*** *********.****

4. spacer 1.8|1563709|18|NZ_CP024644|CRT matches to position: 2465132-2465149, mismatch: 2, identity: 0.889

tcccagacgctgtcccag	CRISPR spacer
tcccagacgatgtgccag	Protospacer
********* *** ****

5. spacer 1.9|1563745|18|NZ_CP024644|CRT matches to position: 570907-570924, mismatch: 2, identity: 0.889

gccccgacgctggccccg	CRISPR spacer
gcccagccgctggccccg	Protospacer
**** * ***********

6. spacer 1.9|1563745|18|NZ_CP024644|CRT matches to position: 1140279-1140296, mismatch: 2, identity: 0.889

gccccgacgctggccccg	CRISPR spacer
gccccgacgctcgcctcg	Protospacer
*********** ***.**

7. spacer 1.9|1563745|18|NZ_CP024644|CRT matches to position: 2147417-2147434, mismatch: 2, identity: 0.889

gccccgacgctggccccg	CRISPR spacer
gcccgcacgctggccccg	Protospacer
****  ************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP024644_1	1.10\|1563781\|30\|NZ_CP024644\|CRT	1563781-1563810	30	NZ_CP009112	Rhodococcus opacus strain 1CP plasmid pR1CP1, complete sequence	40339-40368	6	0.8
NZ_CP024644_1	1.10\|1563781\|30\|NZ_CP024644\|CRT	1563781-1563810	30	MK919472	Mycobacterium phage Benvolio, complete genome	15325-15354	6	0.8
NZ_CP024644_1	1.10\|1563781\|30\|NZ_CP024644\|CRT	1563781-1563810	30	KF981601	Mycobacterium phage Echild, complete genome	15325-15354	6	0.8
NZ_CP024644_1	1.10\|1563781\|30\|NZ_CP024644\|CRT	1563781-1563810	30	MF472896	Mycobacterium phage JoshKayV, complete genome	18355-18384	6	0.8
NZ_CP024644_1	1.11\|1563829\|30\|NZ_CP024644\|CRT	1563829-1563858	30	NZ_CP009112	Rhodococcus opacus strain 1CP plasmid pR1CP1, complete sequence	40339-40368	6	0.8
NZ_CP024644_1	1.11\|1563829\|30\|NZ_CP024644\|CRT	1563829-1563858	30	MK919472	Mycobacterium phage Benvolio, complete genome	15325-15354	6	0.8
NZ_CP024644_1	1.11\|1563829\|30\|NZ_CP024644\|CRT	1563829-1563858	30	KF981601	Mycobacterium phage Echild, complete genome	15325-15354	6	0.8
NZ_CP024644_1	1.11\|1563829\|30\|NZ_CP024644\|CRT	1563829-1563858	30	MF472896	Mycobacterium phage JoshKayV, complete genome	18355-18384	6	0.8
NZ_CP024644_1	1.5\|1563589\|30\|NZ_CP024644\|CRT	1563589-1563618	30	MN629346	Aeromonas caviae strain 1507-17068 plasmid p717068-IMP, complete sequence	2982-3011	7	0.767
NZ_CP024644_1	1.10\|1563781\|30\|NZ_CP024644\|CRT	1563781-1563810	30	NZ_CP034188	Deinococcus sp. S14-83 strain S14-83T plasmid unnamed4, complete sequence	29283-29312	7	0.767
NZ_CP024644_1	1.10\|1563781\|30\|NZ_CP024644\|CRT	1563781-1563810	30	MT310879	Mycobacterium phage MA5, complete genome	13720-13749	7	0.767
NZ_CP024644_1	1.10\|1563781\|30\|NZ_CP024644\|CRT	1563781-1563810	30	MF373840	Mycobacterium phage Fred313, complete genome	13841-13870	7	0.767
NZ_CP024644_1	1.10\|1563781\|30\|NZ_CP024644\|CRT	1563781-1563810	30	KC172839	Mycobacterium phage BTCU-1, complete genome	14174-14203	7	0.767
NZ_CP024644_1	1.10\|1563781\|30\|NZ_CP024644\|CRT	1563781-1563810	30	NZ_CP029777	Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence	23231-23260	7	0.767
NZ_CP024644_1	1.10\|1563781\|30\|NZ_CP024644\|CRT	1563781-1563810	30	NC_013855	Azospirillum sp. B510 plasmid pAB510a, complete sequence	811900-811929	7	0.767
NZ_CP024644_1	1.10\|1563781\|30\|NZ_CP024644\|CRT	1563781-1563810	30	KX641263	Mycobacterium phage Kalpine, complete genome	19728-19757	7	0.767
NZ_CP024644_1	1.10\|1563781\|30\|NZ_CP024644\|CRT	1563781-1563810	30	MN585968	Mycobacterium phage Leogania, complete genome	20088-20117	7	0.767
NZ_CP024644_1	1.10\|1563781\|30\|NZ_CP024644\|CRT	1563781-1563810	30	NC_048046	Caulobacter phage CcrPW, complete genome	254080-254109	7	0.767
NZ_CP024644_1	1.10\|1563781\|30\|NZ_CP024644\|CRT	1563781-1563810	30	MN586002	Mycobacterium phage BiancaTri92, complete genome	19731-19760	7	0.767
NZ_CP024644_1	1.11\|1563829\|30\|NZ_CP024644\|CRT	1563829-1563858	30	NZ_CP034188	Deinococcus sp. S14-83 strain S14-83T plasmid unnamed4, complete sequence	29283-29312	7	0.767
NZ_CP024644_1	1.11\|1563829\|30\|NZ_CP024644\|CRT	1563829-1563858	30	MT310879	Mycobacterium phage MA5, complete genome	13720-13749	7	0.767
NZ_CP024644_1	1.11\|1563829\|30\|NZ_CP024644\|CRT	1563829-1563858	30	MF373840	Mycobacterium phage Fred313, complete genome	13841-13870	7	0.767
NZ_CP024644_1	1.11\|1563829\|30\|NZ_CP024644\|CRT	1563829-1563858	30	KC172839	Mycobacterium phage BTCU-1, complete genome	14174-14203	7	0.767
NZ_CP024644_1	1.11\|1563829\|30\|NZ_CP024644\|CRT	1563829-1563858	30	NZ_CP029777	Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence	23231-23260	7	0.767
NZ_CP024644_1	1.11\|1563829\|30\|NZ_CP024644\|CRT	1563829-1563858	30	NC_013855	Azospirillum sp. B510 plasmid pAB510a, complete sequence	811900-811929	7	0.767
NZ_CP024644_1	1.11\|1563829\|30\|NZ_CP024644\|CRT	1563829-1563858	30	KX641263	Mycobacterium phage Kalpine, complete genome	19728-19757	7	0.767
NZ_CP024644_1	1.11\|1563829\|30\|NZ_CP024644\|CRT	1563829-1563858	30	MN585968	Mycobacterium phage Leogania, complete genome	20088-20117	7	0.767
NZ_CP024644_1	1.11\|1563829\|30\|NZ_CP024644\|CRT	1563829-1563858	30	NC_048046	Caulobacter phage CcrPW, complete genome	254080-254109	7	0.767
NZ_CP024644_1	1.11\|1563829\|30\|NZ_CP024644\|CRT	1563829-1563858	30	MN586002	Mycobacterium phage BiancaTri92, complete genome	19731-19760	7	0.767
NZ_CP024644_1	1.5\|1563589\|30\|NZ_CP024644\|CRT	1563589-1563618	30	NZ_CP006370	Aureimonas sp. AU20 plasmid pAU20c, complete sequence	257520-257549	8	0.733
NZ_CP024644_1	1.5\|1563589\|30\|NZ_CP024644\|CRT	1563589-1563618	30	NC_048736	Serratia phage vB_SmaA_3M, complete genome	110985-111014	8	0.733
NZ_CP024644_1	1.10\|1563781\|30\|NZ_CP024644\|CRT	1563781-1563810	30	MK494113	Mycobacterium phage Refuge, complete genome	17571-17600	9	0.7
NZ_CP024644_1	1.11\|1563829\|30\|NZ_CP024644\|CRT	1563829-1563858	30	MK494113	Mycobacterium phage Refuge, complete genome	17571-17600	9	0.7

1. spacer 1.10|1563781|30|NZ_CP024644|CRT matches to NZ_CP009112 (Rhodococcus opacus strain 1CP plasmid pR1CP1, complete sequence) position: , mismatch: 6, identity: 0.8

tccccgacgctgtcccagacgctggccccg	CRISPR spacer
tcgaggtcggtgccccagacgctggccccg	Protospacer
**   * ** **.*****************

2. spacer 1.10|1563781|30|NZ_CP024644|CRT matches to MK919472 (Mycobacterium phage Benvolio, complete genome) position: , mismatch: 6, identity: 0.8

tccccgacgctgtcccagacgctggccccg	CRISPR spacer
tggccgacgctgtcccagacggtgaggccg	Protospacer
*  ****************** **.  ***

3. spacer 1.10|1563781|30|NZ_CP024644|CRT matches to KF981601 (Mycobacterium phage Echild, complete genome) position: , mismatch: 6, identity: 0.8

tccccgacgctgtcccagacgctggccccg	CRISPR spacer
tggccgacgctgtcccagacggtgaggccg	Protospacer
*  ****************** **.  ***

4. spacer 1.10|1563781|30|NZ_CP024644|CRT matches to MF472896 (Mycobacterium phage JoshKayV, complete genome) position: , mismatch: 6, identity: 0.8

tccccgacgctgtcccagacgctggccccg	CRISPR spacer
ttccagacgctctcccagacgctggtcacc	Protospacer
*.** ****** *************.* *

5. spacer 1.11|1563829|30|NZ_CP024644|CRT matches to NZ_CP009112 (Rhodococcus opacus strain 1CP plasmid pR1CP1, complete sequence) position: , mismatch: 6, identity: 0.8

tccccgacgctgtcccagacgctggccccg	CRISPR spacer
tcgaggtcggtgccccagacgctggccccg	Protospacer
**   * ** **.*****************

6. spacer 1.11|1563829|30|NZ_CP024644|CRT matches to MK919472 (Mycobacterium phage Benvolio, complete genome) position: , mismatch: 6, identity: 0.8

tccccgacgctgtcccagacgctggccccg	CRISPR spacer
tggccgacgctgtcccagacggtgaggccg	Protospacer
*  ****************** **.  ***

7. spacer 1.11|1563829|30|NZ_CP024644|CRT matches to KF981601 (Mycobacterium phage Echild, complete genome) position: , mismatch: 6, identity: 0.8

tccccgacgctgtcccagacgctggccccg	CRISPR spacer
tggccgacgctgtcccagacggtgaggccg	Protospacer
*  ****************** **.  ***

8. spacer 1.11|1563829|30|NZ_CP024644|CRT matches to MF472896 (Mycobacterium phage JoshKayV, complete genome) position: , mismatch: 6, identity: 0.8

tccccgacgctgtcccagacgctggccccg	CRISPR spacer
ttccagacgctctcccagacgctggtcacc	Protospacer
*.** ****** *************.* *

9. spacer 1.5|1563589|30|NZ_CP024644|CRT matches to MN629346 (Aeromonas caviae strain 1507-17068 plasmid p717068-IMP, complete sequence) position: , mismatch: 7, identity: 0.767

gccctgacgctgtcccagacgctgtcccag	CRISPR spacer
acgctgacgctgccccagaggctgtcgtcg	Protospacer
.* *********.****** ****** . *

10. spacer 1.10|1563781|30|NZ_CP024644|CRT matches to NZ_CP034188 (Deinococcus sp. S14-83 strain S14-83T plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.767

tccccgacgctgtcccagacgctggccccg	CRISPR spacer
atgcgggcgctgcccaagacgctggccccg	Protospacer
 . * *.*****.** **************

11. spacer 1.10|1563781|30|NZ_CP024644|CRT matches to MT310879 (Mycobacterium phage MA5, complete genome) position: , mismatch: 7, identity: 0.767

tccccgacgctgtcccagacgctggccccg	CRISPR spacer
tggccgacgctgtcccagacggtgaggcca	Protospacer
*  ****************** **.  **.

12. spacer 1.10|1563781|30|NZ_CP024644|CRT matches to MF373840 (Mycobacterium phage Fred313, complete genome) position: , mismatch: 7, identity: 0.767

tccccgacgctgtcccagacgctggccccg	CRISPR spacer
tggccgacgctgtcccagacggtgaggcca	Protospacer
*  ****************** **.  **.

13. spacer 1.10|1563781|30|NZ_CP024644|CRT matches to KC172839 (Mycobacterium phage BTCU-1, complete genome) position: , mismatch: 7, identity: 0.767

tccccgacgctgtcccagacgctggccccg	CRISPR spacer
tggccgacgctgtcccagacggtgaggcca	Protospacer
*  ****************** **.  **.

14. spacer 1.10|1563781|30|NZ_CP024644|CRT matches to NZ_CP029777 (Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.767

tccccgacgctgtcccagacgctggccccg	CRISPR spacer
ggcctctcgctgtcgcagacgctggcccag	Protospacer
  **.  ******* ************* *

15. spacer 1.10|1563781|30|NZ_CP024644|CRT matches to NC_013855 (Azospirillum sp. B510 plasmid pAB510a, complete sequence) position: , mismatch: 7, identity: 0.767

tccccgacgctgtcccagacgctggccccg	CRISPR spacer
atcgcaccgctggcccagacgctggcaccg	Protospacer
 .* *. ***** ************* ***

16. spacer 1.10|1563781|30|NZ_CP024644|CRT matches to KX641263 (Mycobacterium phage Kalpine, complete genome) position: , mismatch: 7, identity: 0.767

tccccgacgctgtcccagacgctggccccg	CRISPR spacer
ttccagacgctctcccagacgctggtgacc	Protospacer
*.** ****** *************.  *

17. spacer 1.10|1563781|30|NZ_CP024644|CRT matches to MN585968 (Mycobacterium phage Leogania, complete genome) position: , mismatch: 7, identity: 0.767

tccccgacgctgtcccagacgctggccccg	CRISPR spacer
ttccagacgctctcccagacgctggtaacc	Protospacer
*.** ****** *************.  *

18. spacer 1.10|1563781|30|NZ_CP024644|CRT matches to NC_048046 (Caulobacter phage CcrPW, complete genome) position: , mismatch: 7, identity: 0.767

tccccgacgctgtcccagacgctggccccg	CRISPR spacer
cacccgacgctttcccagaccctggagcag	Protospacer
. ********* ******** ****  * *

19. spacer 1.10|1563781|30|NZ_CP024644|CRT matches to MN586002 (Mycobacterium phage BiancaTri92, complete genome) position: , mismatch: 7, identity: 0.767

tccccgacgctgtcccagacgctggccccg	CRISPR spacer
ttccagacgctctcccagacgctggtaacc	Protospacer
*.** ****** *************.  *

20. spacer 1.11|1563829|30|NZ_CP024644|CRT matches to NZ_CP034188 (Deinococcus sp. S14-83 strain S14-83T plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.767

tccccgacgctgtcccagacgctggccccg	CRISPR spacer
atgcgggcgctgcccaagacgctggccccg	Protospacer
 . * *.*****.** **************

21. spacer 1.11|1563829|30|NZ_CP024644|CRT matches to MT310879 (Mycobacterium phage MA5, complete genome) position: , mismatch: 7, identity: 0.767

tccccgacgctgtcccagacgctggccccg	CRISPR spacer
tggccgacgctgtcccagacggtgaggcca	Protospacer
*  ****************** **.  **.

22. spacer 1.11|1563829|30|NZ_CP024644|CRT matches to MF373840 (Mycobacterium phage Fred313, complete genome) position: , mismatch: 7, identity: 0.767

tccccgacgctgtcccagacgctggccccg	CRISPR spacer
tggccgacgctgtcccagacggtgaggcca	Protospacer
*  ****************** **.  **.

23. spacer 1.11|1563829|30|NZ_CP024644|CRT matches to KC172839 (Mycobacterium phage BTCU-1, complete genome) position: , mismatch: 7, identity: 0.767

tccccgacgctgtcccagacgctggccccg	CRISPR spacer
tggccgacgctgtcccagacggtgaggcca	Protospacer
*  ****************** **.  **.

24. spacer 1.11|1563829|30|NZ_CP024644|CRT matches to NZ_CP029777 (Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.767

tccccgacgctgtcccagacgctggccccg	CRISPR spacer
ggcctctcgctgtcgcagacgctggcccag	Protospacer
  **.  ******* ************* *

25. spacer 1.11|1563829|30|NZ_CP024644|CRT matches to NC_013855 (Azospirillum sp. B510 plasmid pAB510a, complete sequence) position: , mismatch: 7, identity: 0.767

tccccgacgctgtcccagacgctggccccg	CRISPR spacer
atcgcaccgctggcccagacgctggcaccg	Protospacer
 .* *. ***** ************* ***

26. spacer 1.11|1563829|30|NZ_CP024644|CRT matches to KX641263 (Mycobacterium phage Kalpine, complete genome) position: , mismatch: 7, identity: 0.767

tccccgacgctgtcccagacgctggccccg	CRISPR spacer
ttccagacgctctcccagacgctggtgacc	Protospacer
*.** ****** *************.  *

27. spacer 1.11|1563829|30|NZ_CP024644|CRT matches to MN585968 (Mycobacterium phage Leogania, complete genome) position: , mismatch: 7, identity: 0.767

tccccgacgctgtcccagacgctggccccg	CRISPR spacer
ttccagacgctctcccagacgctggtaacc	Protospacer
*.** ****** *************.  *

28. spacer 1.11|1563829|30|NZ_CP024644|CRT matches to NC_048046 (Caulobacter phage CcrPW, complete genome) position: , mismatch: 7, identity: 0.767

tccccgacgctgtcccagacgctggccccg	CRISPR spacer
cacccgacgctttcccagaccctggagcag	Protospacer
. ********* ******** ****  * *

29. spacer 1.11|1563829|30|NZ_CP024644|CRT matches to MN586002 (Mycobacterium phage BiancaTri92, complete genome) position: , mismatch: 7, identity: 0.767

tccccgacgctgtcccagacgctggccccg	CRISPR spacer
ttccagacgctctcccagacgctggtaacc	Protospacer
*.** ****** *************.  *

30. spacer 1.5|1563589|30|NZ_CP024644|CRT matches to NZ_CP006370 (Aureimonas sp. AU20 plasmid pAU20c, complete sequence) position: , mismatch: 8, identity: 0.733

gccctgacgctgtcccagacgctgtcccag	CRISPR spacer
cccttgacgctgtcccagacgccgagcttt	Protospacer
 **.******************.*  *.

31. spacer 1.5|1563589|30|NZ_CP024644|CRT matches to NC_048736 (Serratia phage vB_SmaA_3M, complete genome) position: , mismatch: 8, identity: 0.733

gccctgacgctgtcccagacgctgtcccag	CRISPR spacer
cacctgatgctgacccagacgctgttgaac	Protospacer
  *****.**** ************.  *

32. spacer 1.10|1563781|30|NZ_CP024644|CRT matches to MK494113 (Mycobacterium phage Refuge, complete genome) position: , mismatch: 9, identity: 0.7

tccccgacgctgtcccagacgctggccccg	CRISPR spacer
tggccgacgctgtcccagacggtgagggtc	Protospacer
*  ****************** **.   .

33. spacer 1.11|1563829|30|NZ_CP024644|CRT matches to MK494113 (Mycobacterium phage Refuge, complete genome) position: , mismatch: 9, identity: 0.7

tccccgacgctgtcccagacgctggccccg	CRISPR spacer
tggccgacgctgtcccagacggtgagggtc	Protospacer
*  ****************** **.   .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

4220 : 63141

Enterobacteria_phage(75.0%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039998273.1\|4220_5051_+\|transposase	IS5-like element IS1032 family transposase	NA	NA	NA	NA
WP_157771989.1\|5132_6443_-	DNA (cytosine-5-)-methyltransferase	K4HZD0	Acidithiobacillus_phage	6.5e-66	38.8
WP_083824392.1\|7260_7551_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_007397390.1\|7647_8169_-	hypothetical protein	NA	NA	NA	NA
WP_007396167.1\|8217_9063_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	3.8e-51	46.4
WP_007396168.1\|9059_10310_-\|transposase	IS21 family transposase	U5N3F9	Enterobacteria_phage	2.8e-42	32.3
WP_007397392.1\|12289_13135_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_039998602.1\|13131_14388_-	amidohydrolase/deacetylase family metallohydrolase	NA	NA	NA	NA
WP_099963161.1\|14558_15083_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_007397395.1\|15091_16561_-	sodium:solute symporter	NA	NA	NA	NA
WP_050800562.1\|16557_16809_-	DUF3311 domain-containing protein	NA	NA	NA	NA
WP_039998604.1\|17024_17642_-	hypothetical protein	NA	NA	NA	NA
WP_039998569.1\|17742_18546_-	hypothetical protein	NA	NA	NA	NA
WP_166498161.1\|19112_19277_+	hypothetical protein	NA	NA	NA	NA
WP_034930030.1\|20273_20525_-	hypothetical protein	NA	NA	NA	NA
WP_034930061.1\|20632_22078_-	cardiolipin synthase	NA	NA	NA	NA
WP_050800565.1\|22169_23897_-	SulP family inorganic anion transporter	NA	NA	NA	NA
WP_039998606.1\|24049_24598_-	hypothetical protein	NA	NA	NA	NA
WP_157771990.1\|24760_24913_+	hypothetical protein	NA	NA	NA	NA
WP_146750225.1\|25379_26390_+	hypothetical protein	NA	NA	NA	NA
WP_099963162.1\|26658_27744_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_007397416.1\|27818_28034_+	zinc-finger domain-containing protein	NA	NA	NA	NA
WP_007397417.1\|28048_30823_+	DNA polymerase I	A7XXH2	Thermus_virus	5.4e-54	33.4
WP_039998570.1\|30822_31452_+	SCO family protein	NA	NA	NA	NA
WP_007397419.1\|31466_33143_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_039998571.1\|33164_35855_-	hypothetical protein	NA	NA	NA	NA
WP_007397421.1\|35856_38076_-	glycoside hydrolase family 37	NA	NA	NA	NA
WP_007397422.1\|38097_40494_-	glycosyl hydrolase	NA	NA	NA	NA
WP_007397423.1\|40490_40799_-	xylose-proton symporter	NA	NA	NA	NA
WP_050800526.1\|41133_42300_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_083824393.1\|42364_43381_-	hypothetical protein	NA	NA	NA	NA
WP_168175563.1\|43460_45680_-	TonB-dependent receptor	NA	NA	NA	NA
WP_007397428.1\|46633_47428_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_050800583.1\|47446_48148_-	Asp/Glu racemase	NA	NA	NA	NA
WP_034931063.1\|48220_48856_-	isochorismatase family protein	NA	NA	NA	NA
WP_039998573.1\|48855_49893_-	hypothetical protein	NA	NA	NA	NA
WP_050800570.1\|49883_50453_-	hypothetical protein	Q9KX94	Enterobacteria_phage	1.5e-43	51.6
WP_007396167.1\|50556_51402_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	3.8e-51	46.4
WP_007396168.1\|51398_52649_-\|transposase	IS21 family transposase	U5N3F9	Enterobacteria_phage	2.8e-42	32.3
WP_083824394.1\|52775_53555_-	hypothetical protein	Q9KX94	Enterobacteria_phage	2.0e-54	48.1
WP_039998612.1\|53500_57094_-	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA
WP_007397437.1\|57093_57570_-	(2Fe-2S)-binding protein	NA	NA	NA	NA
WP_007397438.1\|57589_58717_-	NAD(P)-binding protein	NA	NA	NA	NA
WP_007397439.1\|58893_59331_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_157771991.1\|59572_60865_-	hypothetical protein	NA	NA	NA	NA
WP_007397441.1\|60949_61672_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_050800526.1\|61974_63141_-\|transposase	IS110 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

359539 : 453159

Enterobacteria_phage(61.54%)

transposase,holin,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_035366909.1\|359539_360370_+\|transposase	IS5-like element IS1032 family transposase	NA	NA	NA	NA
WP_099963290.1\|360719_362852_+	TonB-dependent receptor	NA	NA	NA	NA
WP_007397799.1\|363015_363477_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_039998668.1\|363586_365062_+	aminotransferase class V-fold PLP-dependent enzyme	A0A1C9C5E2	Heterosigma_akashiwo_virus	3.3e-42	28.2
WP_039998669.1\|365228_365543_+	hypothetical protein	NA	NA	NA	NA
WP_039998670.1\|366907_368752_-	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	3.4e-52	29.9
WP_034928479.1\|368890_370225_-	homoserine dehydrogenase	NA	NA	NA	NA
WP_007397808.1\|370251_371493_-	LL-diaminopimelate aminotransferase	NA	NA	NA	NA
WP_039998671.1\|371581_372586_-	OmpA family protein	NA	NA	NA	NA
WP_007397811.1\|372787_373462_+\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	6.6e-30	37.9
WP_007397812.1\|373676_374681_+	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_007397813.1\|374737_375259_-	hypothetical protein	NA	NA	NA	NA
WP_034928473.1\|375507_375876_+	hypothetical protein	NA	NA	NA	NA
WP_034928470.1\|375949_376507_+	cytochrome b	NA	NA	NA	NA
WP_007397819.1\|376906_379012_+	EAL domain-containing protein	NA	NA	NA	NA
WP_039998672.1\|381390_383619_+	EAL domain-containing protein	NA	NA	NA	NA
WP_007396168.1\|383840_385091_+\|transposase	IS21 family transposase	U5N3F9	Enterobacteria_phage	2.8e-42	32.3
WP_007396167.1\|385087_385933_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	3.8e-51	46.4
WP_139064275.1\|385969_387094_+	hypothetical protein	NA	NA	NA	NA
WP_139064276.1\|387097_387544_+	hypothetical protein	NA	NA	NA	NA
WP_007397825.1\|388596_391635_+	hypothetical protein	NA	NA	NA	NA
WP_139064277.1\|391931_392444_+	hypothetical protein	NA	NA	NA	NA
WP_139064278.1\|393520_394144_+	hypothetical protein	NA	NA	NA	NA
WP_050800604.1\|394421_394817_+	hypothetical protein	NA	NA	NA	NA
WP_050800606.1\|394878_395235_+	DUF2513 domain-containing protein	NA	NA	NA	NA
WP_099963172.1\|395583_395859_+	WGR domain-containing protein	NA	NA	NA	NA
WP_007397832.1\|395895_397254_+	hypothetical protein	NA	NA	NA	NA
WP_112210144.1\|397510_398029_+	DUF3916 domain-containing protein	NA	NA	NA	NA
WP_083824416.1\|398190_398553_-\|transposase	transposase	NA	NA	NA	NA
WP_007397835.1\|398820_399042_+\|transposase	transposase	NA	NA	NA	NA
WP_007396168.1\|399146_400397_+\|transposase	IS21 family transposase	U5N3F9	Enterobacteria_phage	2.8e-42	32.3
WP_007396167.1\|400393_401239_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	3.8e-51	46.4
WP_010510701.1\|401483_401831_+	IS66 family insertion sequence element accessory protein TnpB	S5WJH4	Leptospira_phage	1.6e-11	46.8
WP_007397838.1\|401894_403505_+\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	1.8e-110	42.4
WP_083824406.1\|403559_405419_+	hypothetical protein	NA	NA	NA	NA
WP_007397840.1\|405625_406099_+	hypothetical protein	NA	NA	NA	NA
WP_007396168.1\|407973_409224_+\|transposase	IS21 family transposase	U5N3F9	Enterobacteria_phage	2.8e-42	32.3
WP_007396167.1\|409220_410066_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	3.8e-51	46.4
WP_099963173.1\|411097_415084_+	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA
WP_007399412.1\|415083_415695_+	ANTAR domain-containing protein	NA	NA	NA	NA
WP_039999486.1\|415691_416687_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_007399414.1\|416711_417167_+	nitrate reductase maturation protein NarM	NA	NA	NA	NA
WP_039999488.1\|417367_418201_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_007399417.1\|418194_418551_-	hypothetical protein	NA	NA	NA	NA
WP_139064306.1\|418659_418878_-	hypothetical protein	NA	NA	NA	NA
WP_099963291.1\|419100_421455_+	TonB-dependent receptor	NA	NA	NA	NA
WP_039999492.1\|421625_422120_+	hypothetical protein	NA	NA	NA	NA
WP_007399423.1\|422278_423358_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA
WP_050800748.1\|423398_424043_-	cysteine hydrolase	NA	NA	NA	NA
WP_099963292.1\|424245_425187_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_007399426.1\|425232_425724_-	VOC family protein	NA	NA	NA	NA
WP_083824485.1\|426006_426834_+	4,5-DOPA dioxygenase extradiol	NA	NA	NA	NA
WP_007399428.1\|426973_428080_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_039999498.1\|428131_428944_+	taurine dioxygenase	NA	NA	NA	NA
WP_099963174.1\|429073_430234_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA
WP_083824486.1\|430537_431347_-	hypothetical protein	NA	NA	NA	NA
WP_007396168.1\|431381_432632_+\|transposase	IS21 family transposase	U5N3F9	Enterobacteria_phage	2.8e-42	32.3
WP_007396167.1\|432628_433474_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	3.8e-51	46.4
WP_007399433.1\|433534_433927_-	acetamidase/formamidase	NA	NA	NA	NA
WP_039999499.1\|434191_435154_+	oxidoreductase	NA	NA	NA	NA
WP_039999544.1\|435296_436670_-	peptidase M20	NA	NA	NA	NA
WP_007399437.1\|436708_437941_-	MFS transporter	NA	NA	NA	NA
WP_007399439.1\|438931_440104_-	hypothetical protein	NA	NA	NA	NA
WP_099963175.1\|440627_442904_+	TonB-dependent receptor	NA	NA	NA	NA
WP_085948995.1\|443234_444629_+	ethanolamine permease	NA	NA	NA	NA
WP_038507806.1\|445244_446081_-\|transposase	IS5-like element IS1031A family transposase	NA	NA	NA	NA
WP_039998273.1\|446233_447064_+\|transposase	IS5-like element IS1032 family transposase	NA	NA	NA	NA
WP_007399449.1\|447094_449521_+	TonB-dependent receptor	NA	NA	NA	NA
WP_007399450.1\|449779_451072_-	phosphoserine phosphatase	NA	NA	NA	NA
WP_007399451.1\|451068_453159_-\|holin	phospholipase C, phosphocholine-specific	NA	NA	NA	NA

DBSCAN-SWA_3

1089664 : 1135628

Enterobacteria_phage(41.67%)

transposase,integrase

attL 1099148:1099207|attR 1119546:1121847

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_035366909.1\|1089664_1090495_+\|transposase	IS5-like element IS1032 family transposase	NA	NA	NA	NA
WP_083824501.1\|1090695_1091379_+	hypothetical protein	A0A1I9KF49	Aeromonas_phage	1.0e-09	29.4
WP_083824502.1\|1091511_1092429_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_139064312.1\|1092903_1093755_-	hypothetical protein	NA	NA	NA	NA
WP_085949001.1\|1093800_1094887_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	8.8e-08	24.1
WP_146750222.1\|1095065_1095875_-	hypothetical protein	NA	NA	NA	NA
1099148:1099207	attL	NA	NA	NA	NA
WP_007396167.1\|1099212_1100058_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	3.8e-51	46.4
WP_007396168.1\|1100054_1101305_-\|transposase	IS21 family transposase	U5N3F9	Enterobacteria_phage	2.8e-42	32.3
WP_099963298.1\|1101468_1101657_+	DUF2274 domain-containing protein	NA	NA	NA	NA
WP_099963191.1\|1101778_1102033_-	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA
WP_039999902.1\|1102480_1103308_-	hypothetical protein	NA	NA	NA	NA
WP_157771999.1\|1103309_1103876_-	AAA family ATPase	NA	NA	NA	NA
WP_039999906.1\|1105425_1106784_+	metallophosphoesterase	NA	NA	NA	NA
WP_007400114.1\|1106780_1107815_+	hypothetical protein	NA	NA	NA	NA
WP_007400115.1\|1107811_1108828_+	hypothetical protein	NA	NA	NA	NA
WP_039999908.1\|1108824_1109670_+	hypothetical protein	NA	NA	NA	NA
WP_039999911.1\|1109671_1112314_+	hypothetical protein	NA	NA	NA	NA
WP_050800801.1\|1112995_1114051_+	hypothetical protein	NA	NA	NA	NA
WP_007400121.1\|1114835_1115948_+	Fic family protein	D7RWK9	Brochothrix_phage	8.7e-11	24.0
WP_007400122.1\|1115998_1117165_-\|integrase	tyrosine-type recombinase/integrase	A0A221SAN4	Ralstonia_phage	9.6e-45	33.0
WP_007400123.1\|1117341_1119000_-	recombinase family protein	R9TP69	Rhizobium_phage	7.2e-86	36.4
WP_007400124.1\|1119012_1119207_-	hypothetical protein	NA	NA	NA	NA
WP_007396167.1\|1119610_1120456_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	3.8e-51	46.4
WP_007396168.1\|1120452_1121703_-\|transposase	IS21 family transposase	U5N3F9	Enterobacteria_phage	2.8e-42	32.3
WP_007400126.1\|1121907_1123959_+	ParB/RepB/Spo0J family partition protein	NA	NA	NA	NA
1119546:1121847	attR	NA	NA	NA	NA
WP_099963299.1\|1124053_1124776_-	hypothetical protein	NA	NA	NA	NA
WP_139064317.1\|1125042_1125924_+	hypothetical protein	NA	NA	NA	NA
WP_083824505.1\|1126378_1127407_+	AAA family ATPase	Q7M293	Enterobacteria_phage	2.8e-24	28.7
WP_007400131.1\|1127872_1129075_+	hypothetical protein	A0A1V0DX75	Synechococcus_virus	1.1e-72	41.6
WP_007400132.1\|1129158_1129599_+	hypothetical protein	NA	NA	NA	NA
WP_039999916.1\|1129585_1130632_+	DNA primase	NA	NA	NA	NA
WP_039999918.1\|1130954_1131884_+	DUF2493 domain-containing protein	A0A291L9X7	Bordetella_phage	3.7e-15	37.6
WP_007400135.1\|1131893_1132103_-	hypothetical protein	NA	NA	NA	NA
WP_039999920.1\|1132266_1132707_+	hypothetical protein	NA	NA	NA	NA
WP_007400139.1\|1133302_1133629_+	DUF736 domain-containing protein	NA	NA	NA	NA
WP_035366403.1\|1134104_1135628_+\|transposase	IS21 family transposase	NA	NA	NA	NA

DBSCAN-SWA_4

1553199 : 1627662

Enterobacteria_phage(31.58%)

portal,head,tail,integrase,plate,transposase,terminase,capsid,tRNA

attL 1545076:1545090|attR 1608789:1608805

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1545076:1545090	attL	NA	NA	NA	NA
WP_014104509.1\|1553199_1553487_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA	NA	NA	NA
1545076:1545090	attL	NA	NA	NA	NA
WP_040000121.1\|1553488_1554973_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA	NA	NA	NA
WP_034928378.1\|1554969_1556418_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA	NA	NA	NA
WP_085949004.1\|1556680_1557427_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_007400607.1\|1557654_1557996_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_040000124.1\|1557992_1558223_-	hypothetical protein	NA	NA	NA	NA
WP_139064324.1\|1558269_1558818_-	hypothetical protein	NA	NA	NA	NA
WP_007396167.1\|1558940_1559786_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	3.8e-51	46.4
WP_007396168.1\|1559782_1561033_-\|transposase	IS21 family transposase	U5N3F9	Enterobacteria_phage	2.8e-42	32.3
WP_157772003.1\|1561172_1561583_-	hypothetical protein	NA	NA	NA	NA
WP_007400612.1\|1561579_1561717_-	hypothetical protein	NA	NA	NA	NA
WP_007400613.1\|1561713_1562634_-	hypothetical protein	NA	NA	NA	NA
WP_099963209.1\|1562630_1564229_-	hypothetical protein	NA	NA	NA	NA
WP_050800830.1\|1564228_1564558_-	hypothetical protein	NA	NA	NA	NA
WP_007400616.1\|1564611_1564905_-	hypothetical protein	NA	NA	NA	NA
WP_040000132.1\|1565327_1565588_+	hypothetical protein	NA	NA	NA	NA
WP_083824526.1\|1565599_1566244_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_083824527.1\|1566330_1566603_+	hypothetical protein	NA	NA	NA	NA
WP_040000136.1\|1566660_1566921_-	hypothetical protein	NA	NA	NA	NA
WP_040000138.1\|1567063_1567561_-	hypothetical protein	NA	NA	NA	NA
WP_007400625.1\|1567805_1568414_+	hypothetical protein	NA	NA	NA	NA
WP_040000141.1\|1568801_1569047_+	hypothetical protein	NA	NA	NA	NA
WP_040000142.1\|1569031_1569304_+	hypothetical protein	NA	NA	NA	NA
WP_007400629.1\|1569300_1570497_+	hypothetical protein	NA	NA	NA	NA
WP_040000144.1\|1571325_1571553_+	hypothetical protein	NA	NA	NA	NA
WP_040000146.1\|1571652_1572231_+	hypothetical protein	NA	NA	NA	NA
WP_040000148.1\|1572345_1572753_+	hypothetical protein	NA	NA	NA	NA
WP_040000149.1\|1572776_1573043_-	hypothetical protein	NA	NA	NA	NA
WP_099963303.1\|1573471_1574326_+\|integrase	tyrosine-type recombinase/integrase	Q9ZWV7	Corynephage	2.5e-10	27.8
WP_007400640.1\|1574370_1574550_+	hypothetical protein	NA	NA	NA	NA
WP_007400641.1\|1574546_1575155_+	DUF3164 family protein	A0A1B0T6G5	Thiobacimonas_phage	6.7e-50	47.5
WP_007400643.1\|1575529_1576213_+	hypothetical protein	NA	NA	NA	NA
1575726:1575740	attR	NA	NA	NA	NA
WP_007400644.1\|1576215_1576857_+	hypothetical protein	A0A0K1LMA6	Rhodobacter_phage	7.4e-23	35.5
1575726:1575740	attR	NA	NA	NA	NA
WP_099963210.1\|1577123_1577597_+	hypothetical protein	NA	NA	NA	NA
WP_007400646.1\|1577562_1579584_+\|terminase	phage terminase large subunit family protein	G8EXZ6	Synechococcus_phage	8.6e-142	46.9
WP_007400647.1\|1579610_1579907_+	hypothetical protein	NA	NA	NA	NA
WP_040000153.1\|1579906_1581556_+\|portal	phage portal protein	A0A291AUL8	Sinorhizobium_phage	4.9e-79	35.9
WP_007400649.1\|1581552_1582380_+	S49 family peptidase	G8DCP1	Silicibacter_phage	1.0e-48	52.3
WP_007400650.1\|1582403_1582994_+	hypothetical protein	NA	NA	NA	NA
WP_007400651.1\|1583006_1583414_+\|head	head decoration protein	Q6VT74	Vibrio_phage	6.2e-07	43.2
WP_040000154.1\|1583500_1584562_+\|capsid	major capsid protein	A0A0C5ABI0	Bacteriophage	9.4e-39	30.2
WP_007400653.1\|1584571_1584865_+	hypothetical protein	NA	NA	NA	NA
WP_007400654.1\|1584861_1585209_+	hypothetical protein	NA	NA	NA	NA
WP_007400655.1\|1585205_1585730_+	hypothetical protein	NA	NA	NA	NA
WP_007400656.1\|1585740_1585980_+	DUF2635 domain-containing protein	NA	NA	NA	NA
WP_040000156.1\|1585976_1587464_+\|tail	tail sheath protein	B5TK67	Pseudomonas_phage	5.1e-59	35.9
WP_007400658.1\|1587473_1587857_+\|tail	tail protein	NA	NA	NA	NA
WP_007400659.1\|1587853_1588528_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_007400661.1\|1588657_1590877_+	transglycosylase SLT domain-containing protein	A0A0H3V0Q1	Geobacillus_virus	2.3e-07	36.9
WP_007400662.1\|1590879_1592178_+	hypothetical protein	A0A2P9JZK2	Alteromonadaceae_phage	1.9e-17	27.4
WP_040000157.1\|1592174_1593395_+\|tail	tail protein	NA	NA	NA	NA
WP_007400664.1\|1593391_1593898_+	hypothetical protein	NA	NA	NA	NA
WP_007400665.1\|1593913_1594414_+	hypothetical protein	NA	NA	NA	NA
WP_007400666.1\|1594415_1595531_+\|plate	baseplate J/gp47 family protein	NA	NA	NA	NA
WP_007400667.1\|1595555_1596125_+	DUF2313 domain-containing protein	NA	NA	NA	NA
WP_007400669.1\|1597224_1597716_+	hypothetical protein	NA	NA	NA	NA
WP_050800831.1\|1597784_1598192_+	hypothetical protein	NA	NA	NA	NA
WP_007400671.1\|1598188_1598683_+	hypothetical protein	A0A1B2ANT4	Pseudoalteromonas_phage	2.6e-15	36.2
WP_007400672.1\|1598684_1599023_+	hypothetical protein	NA	NA	NA	NA
WP_007400673.1\|1599083_1599422_+	hypothetical protein	NA	NA	NA	NA
WP_040000159.1\|1599759_1600359_+	hypothetical protein	NA	NA	NA	NA
WP_040000184.1\|1600539_1600857_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_007400677.1\|1600868_1601147_-	BrnT family toxin	NA	NA	NA	NA
WP_040000161.1\|1601283_1602102_+	hypothetical protein	NA	NA	NA	NA
WP_007400679.1\|1602098_1602710_+	hypothetical protein	NA	NA	NA	NA
WP_083824529.1\|1603050_1604229_+\|integrase	integrase arm-type DNA-binding domain-containing protein	A0A077KET4	Ralstonia_phage	2.8e-76	42.4
WP_083824532.1\|1604356_1604578_-	AlpA family transcriptional regulator	NA	NA	NA	NA
WP_007400682.1\|1605152_1605617_-	hypothetical protein	NA	NA	NA	NA
WP_040000167.1\|1605688_1605934_-	hypothetical protein	NA	NA	NA	NA
WP_007400685.1\|1606159_1606441_+	hypothetical protein	NA	NA	NA	NA
WP_099963211.1\|1606813_1607353_-	PadR family transcriptional regulator	NA	NA	NA	NA
WP_099963212.1\|1607554_1608283_-	MMPL family transporter	NA	NA	NA	NA
WP_007396167.1\|1608319_1609165_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	3.8e-51	46.4
WP_034929753.1\|1610010_1611063_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_112210158.1\|1611436_1612993_-\|transposase	ISL3 family transposase	NA	NA	NA	NA
WP_003630803.1\|1613217_1613997_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	7.9e-35	38.0
WP_035366403.1\|1613986_1615510_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_007398783.1\|1615890_1616847_-	FecR family protein	NA	NA	NA	NA
WP_007398782.1\|1616929_1617427_-	RNA polymerase sigma factor	NA	NA	NA	NA
WP_039998273.1\|1617620_1618451_+\|transposase	IS5-like element IS1032 family transposase	NA	NA	NA	NA
WP_007398781.1\|1618492_1619443_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_083824458.1\|1619360_1619618_-	DUF2274 domain-containing protein	NA	NA	NA	NA
WP_099963213.1\|1619614_1620439_-	TrbI/VirB10 family protein	NA	NA	NA	NA
WP_007396167.1\|1620519_1621365_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	3.8e-51	46.4
WP_007396168.1\|1621361_1622612_-\|transposase	IS21 family transposase	U5N3F9	Enterobacteria_phage	2.8e-42	32.3
WP_157772004.1\|1622716_1623106_-	hypothetical protein	NA	NA	NA	NA
WP_039998273.1\|1626831_1627662_-\|transposase	IS5-like element IS1032 family transposase	NA	NA	NA	NA

DBSCAN-SWA_5

2330709 : 2418466

Enterobacteria_phage(40.0%)

holin,bacteriocin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007398027.1\|2330709_2331504_+\|bacteriocin	bacteriocin family protein	NA	NA	NA	NA
WP_039998732.1\|2331646_2332585_-	DMT family transporter	NA	NA	NA	NA
WP_034932236.1\|2332725_2333670_-	Fis family transcriptional regulator	NA	NA	NA	NA
WP_039998801.1\|2333804_2334695_-	transporter	NA	NA	NA	NA
WP_007398020.1\|2335491_2336412_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_007398019.1\|2336570_2337050_+	lipocalin-like domain-containing protein	NA	NA	NA	NA
WP_007398015.1\|2337646_2339146_+	carbohydrate porin	NA	NA	NA	NA
WP_039998799.1\|2339293_2340793_+	glycerol kinase GlpK	NA	NA	NA	NA
WP_007398013.1\|2340828_2341668_+	aquaporin family protein	NA	NA	NA	NA
WP_007398012.1\|2341755_2343384_+	FGGY-family carbohydrate kinase	NA	NA	NA	NA
WP_007398011.1\|2343499_2344813_+	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_007398010.1\|2344827_2345748_+	sugar ABC transporter permease	NA	NA	NA	NA
WP_007398009.1\|2345749_2346577_+	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_007398008.1\|2346625_2347735_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	G9BWD6	Planktothrix_phage	5.2e-24	33.7
WP_007398007.1\|2347765_2348539_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_007398005.1\|2348643_2350119_-	NCS1 family nucleobase:cation symporter-1	NA	NA	NA	NA
WP_007398004.1\|2350207_2352706_-	TonB-dependent receptor	NA	NA	NA	NA
WP_007398003.1\|2352849_2353626_-	hypothetical protein	NA	NA	NA	NA
WP_007398002.1\|2353784_2354465_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_050800620.1\|2354573_2357093_-\|holin	phospholipase C, phosphocholine-specific	NA	NA	NA	NA
WP_039998728.1\|2357805_2359035_+	MFS transporter	NA	NA	NA	NA
WP_007397996.1\|2359094_2359691_-	LUD domain-containing protein	NA	NA	NA	NA
WP_007397995.1\|2359687_2361214_-	lactate utilization protein	NA	NA	NA	NA
WP_039998727.1\|2361210_2361954_-	(Fe-S)-binding protein	NA	NA	NA	NA
WP_007397993.1\|2361989_2363741_-	D-lactate dehydrogenase	NA	NA	NA	NA
WP_007397992.1\|2363773_2365255_-	carbohydrate porin	NA	NA	NA	NA
WP_039998726.1\|2365741_2367076_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_007397987.1\|2367413_2369693_+	TonB-dependent receptor	NA	NA	NA	NA
WP_007397985.1\|2370142_2371888_+	oleate hydratase	NA	NA	NA	NA
WP_099963245.1\|2372070_2374200_-	HAD-IIIC family phosphatase	NA	NA	NA	NA
WP_007397982.1\|2374192_2374480_+	hypothetical protein	NA	NA	NA	NA
WP_039998273.1\|2375507_2376338_+\|transposase	IS5-like element IS1032 family transposase	NA	NA	NA	NA
WP_007397977.1\|2378250_2379264_+	LacI family transcriptional regulator	NA	NA	NA	NA
WP_039998725.1\|2379387_2380323_+	TIM barrel protein	NA	NA	NA	NA
WP_039998724.1\|2380319_2381363_+	sugar phosphate isomerase/epimerase	NA	NA	NA	NA
WP_034930163.1\|2381377_2382475_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_007397975.1\|2382517_2384182_+	GMC family oxidoreductase	NA	NA	NA	NA
WP_007397974.1\|2384208_2385537_+	sugar transporter	NA	NA	NA	NA
WP_007397971.1\|2385988_2386969_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_007397970.1\|2387090_2387672_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_039998723.1\|2387847_2398170_-	DUF4347 domain-containing protein	NA	NA	NA	NA
WP_099963246.1\|2398511_2400173_+	TolC family protein	NA	NA	NA	NA
WP_039998722.1\|2400271_2401093_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_083824419.1\|2401113_2402451_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_035366909.1\|2404149_2404980_+\|transposase	IS5-like element IS1032 family transposase	NA	NA	NA	NA
WP_083824418.1\|2405024_2405495_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_039998689.1\|2406017_2406287_-	transcriptional regulator	NA	NA	NA	NA
WP_085948977.1\|2406922_2407033_-	hypothetical protein	NA	NA	NA	NA
WP_099963247.1\|2408482_2408785_+	hypothetical protein	NA	NA	NA	NA
WP_007396168.1\|2408889_2410140_+\|transposase	IS21 family transposase	U5N3F9	Enterobacteria_phage	2.8e-42	32.3
WP_007396167.1\|2410136_2410982_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	3.8e-51	46.4
WP_007397951.1\|2411524_2411890_+	DUF2384 domain-containing protein	NA	NA	NA	NA
WP_083824413.1\|2411886_2412405_+	RES domain-containing protein	NA	NA	NA	NA
WP_039998717.1\|2413198_2415133_+	cadmium-translocating P-type ATPase	A0A218MNH6	uncultured_virus	9.9e-87	37.7
WP_099963248.1\|2415409_2415643_-	hypothetical protein	NA	NA	NA	NA
WP_083824417.1\|2416400_2416730_+	hypothetical protein	NA	NA	NA	NA
WP_156953886.1\|2417097_2417256_+	hypothetical protein	NA	NA	NA	NA
WP_085948976.1\|2417316_2418466_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.3e-54	45.2

DBSCAN-SWA_6

2464566 : 2473654

uncultured_Caudovirales_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007397883.1\|2464566_2464989_+	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	1.8e-49	69.3
WP_007397882.1\|2464988_2466284_+	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	1.5e-134	60.9
WP_039998713.1\|2466307_2467006_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	2.4e-83	69.7
WP_007397880.1\|2467014_2468070_+	NAD(P)/FAD-dependent oxidoreductase	A0A2H4J2Q2	uncultured_Caudovirales_phage	4.6e-78	55.9
WP_007397879.1\|2468284_2468968_-	DUF1275 domain-containing protein	NA	NA	NA	NA
WP_007397878.1\|2468967_2470230_-	sodium:proton antiporter	A0A2H4J178	uncultured_Caudovirales_phage	3.1e-33	41.1
WP_003618711.1\|2470361_2470655_-	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	A0A2H4JBF4	uncultured_Caudovirales_phage	2.1e-17	48.9
WP_003618686.1\|2470651_2470912_-	type II toxin-antitoxin system RelB/DinJ family antitoxin	A0A2H4JBG1	uncultured_Caudovirales_phage	6.1e-08	41.2
WP_010510580.1\|2471231_2472059_-	S-formylglutathione hydrolase	NA	NA	NA	NA
WP_099963253.1\|2472083_2472485_-	VOC family protein	NA	NA	NA	NA
WP_010510585.1\|2472544_2473654_-	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	A0A0K0KVL7	Prochlorococcus_phage	5.2e-32	30.0

DBSCAN-SWA_7

2477480 : 2520169

Enterobacteria_phage(75.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_099963255.1\|2477480_2478560_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_168175566.1\|2478562_2479306_+	hypothetical protein	NA	NA	NA	NA
WP_007397861.1\|2479320_2481093_+	AMP-binding protein	NA	NA	NA	NA
WP_007397860.1\|2481371_2482805_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_007397859.1\|2482807_2483827_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_007397858.1\|2483813_2483963_+	DUF2474 domain-containing protein	NA	NA	NA	NA
WP_099963256.1\|2484160_2485284_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	4.6e-52	42.5
WP_039998678.1\|2487305_2487548_+	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA
WP_083824409.1\|2487547_2487847_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_007397850.1\|2488710_2493921_+	DUF4011 domain-containing protein	NA	NA	NA	NA
WP_039998273.1\|2493922_2494753_-\|transposase	IS5-like element IS1032 family transposase	NA	NA	NA	NA
WP_083824408.1\|2495029_2495653_+	DUF3320 domain-containing protein	NA	NA	NA	NA
WP_007397847.1\|2496201_2496738_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_007397846.1\|2496816_2497815_+	DUF4880 domain-containing protein	NA	NA	NA	NA
WP_099963315.1\|2497987_2500543_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_112210158.1\|2500822_2502379_+\|transposase	ISL3 family transposase	NA	NA	NA	NA
WP_003630803.1\|2502485_2503265_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	7.9e-35	38.0
WP_007396167.1\|2503521_2504367_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	3.8e-51	46.4
WP_007396168.1\|2504363_2505614_-\|transposase	IS21 family transposase	U5N3F9	Enterobacteria_phage	2.8e-42	32.3
WP_007399407.1\|2507728_2509369_-	alginate export family protein	NA	NA	NA	NA
WP_039999532.1\|2509392_2510613_-	NarK/NasA family nitrate transporter	NA	NA	NA	NA
WP_007399403.1\|2510908_2511718_-	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA
WP_039999484.1\|2511939_2512563_-	NTP transferase domain-containing protein	NA	NA	NA	NA
WP_007399398.1\|2512916_2515220_-	FdhF/YdeP family oxidoreductase	NA	NA	NA	NA
WP_007399397.1\|2515243_2515777_-	nitrate reductase maturation protein NarM	NA	NA	NA	NA
WP_007399396.1\|2515832_2515982_-	hypothetical protein	NA	NA	NA	NA
WP_007399395.1\|2515968_2516988_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_039999480.1\|2516991_2518425_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_039998273.1\|2519338_2520169_+\|transposase	IS5-like element IS1032 family transposase	NA	NA	NA	NA

DBSCAN-SWA_8

3035088 : 3086134

Stx2-converting_phage(20.0%)

tRNA,transposase,integrase

attL 3051544:3051603|attR 3080288:3081205

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007398833.1\|3035088_3035661_-\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_007398832.1\|3035699_3036317_-	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA
WP_007398831.1\|3036432_3037023_-	histidine phosphatase family protein	NA	NA	NA	NA
WP_034927308.1\|3037090_3038080_-	ribose-phosphate pyrophosphokinase	A0A1V0SHF7	Hokovirus	2.9e-42	32.4
WP_007398828.1\|3039695_3040490_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA
WP_039999248.1\|3040486_3041506_-	ATP synthase subunit beta	NA	NA	NA	NA
WP_007398826.1\|3041535_3042402_-	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA
WP_007398825.1\|3042462_3043443_-	ADP-glyceromanno-heptose 6-epimerase	Q58M42	Prochlorococcus_phage	1.7e-23	30.5
WP_007398824.1\|3043611_3043902_+	accessory factor UbiK family protein	NA	NA	NA	NA
WP_014106114.1\|3044066_3044570_+	YbjN domain-containing protein	NA	NA	NA	NA
WP_007398822.1\|3044569_3045406_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA
WP_007398821.1\|3045466_3046105_+	hypothetical protein	NA	NA	NA	NA
WP_034927193.1\|3046401_3047424_-	alpha-E domain-containing protein	NA	NA	NA	NA
WP_007398819.1\|3047405_3048872_-	circularly permuted type 2 ATP-grasp protein	NA	NA	NA	NA
WP_039999198.1\|3049160_3050078_+	transglutaminase family protein	NA	NA	NA	NA
WP_007398817.1\|3050074_3051160_+	hypothetical protein	NA	NA	NA	NA
3051544:3051603	attL	NA	NA	NA	NA
WP_039998273.1\|3051553_3052384_-\|transposase	IS5-like element IS1032 family transposase	NA	NA	NA	NA
WP_039999195.1\|3052548_3053496_-	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	2.1e-10	24.8
WP_007398814.1\|3053602_3054346_+	(Fe-S)-binding protein	NA	NA	NA	NA
WP_007398813.1\|3054342_3055752_+	lactate utilization protein	NA	NA	NA	NA
WP_034927182.1\|3055748_3056336_+	LUD domain-containing protein	NA	NA	NA	NA
WP_007398811.1\|3056380_3056650_-	HU family DNA-binding protein	NA	NA	NA	NA
WP_039999246.1\|3057003_3058425_-	hypothetical protein	NA	NA	NA	NA
WP_039999192.1\|3058595_3060659_-	NAD(+) synthase	NA	NA	NA	NA
WP_007398807.1\|3060788_3060965_+	DUF1328 domain-containing protein	NA	NA	NA	NA
WP_083824462.1\|3060918_3061428_-	disulfide bond formation protein B	NA	NA	NA	NA
WP_007398805.1\|3061433_3062786_-	trehalose-6-phosphate synthase	NA	NA	NA	NA
WP_007398804.1\|3062773_3063529_-	trehalose-phosphatase	NA	NA	NA	NA
WP_099963269.1\|3063625_3064282_-	DUF2155 domain-containing protein	NA	NA	NA	NA
WP_007398803.1\|3064278_3064509_-	hypothetical protein	NA	NA	NA	NA
WP_039999183.1\|3064505_3065042_-	outer membrane lipid asymmetry maintenance protein MlaD	NA	NA	NA	NA
WP_007398801.1\|3065101_3065470_-	NADH dehydrogenase	NA	NA	NA	NA
WP_034927170.1\|3065692_3067285_+	vitamin B12-dependent ribonucleotide reductase	A0A1X9SGV9	Bradyrhizobium_phage	2.7e-21	36.9
WP_007398798.1\|3067332_3067800_+	RidA family protein	M1I5B0	Acanthocystis_turfacea_Chlorella_virus	7.3e-28	49.0
WP_007398797.1\|3067879_3069034_+	N-acetyltransferase	NA	NA	NA	NA
WP_039999180.1\|3069120_3070107_+	zinc-dependent alcohol dehydrogenase family protein	A0A1E1EWH3	Acanthamoeba_castellanii_mimivirus	4.2e-17	27.6
WP_099963270.1\|3070277_3072050_+	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	1.5e-33	28.2
WP_007398794.1\|3072137_3072905_+	hypothetical protein	NA	NA	NA	NA
WP_039999175.1\|3072985_3073492_-	hypothetical protein	NA	NA	NA	NA
WP_034927156.1\|3073799_3074021_+	hypothetical protein	NA	NA	NA	NA
WP_007398789.1\|3074017_3074689_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_007398788.1\|3074782_3076588_+	elongation factor 4	E4ZFJ7	Streptococcus_phage	8.8e-21	24.8
WP_139064297.1\|3076925_3078560_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_139064296.1\|3078885_3079473_+	hypothetical protein	NA	NA	NA	NA
WP_039998273.1\|3079506_3080337_+\|transposase	IS5-like element IS1032 family transposase	NA	NA	NA	NA
WP_157772016.1\|3080514_3082440_+	hypothetical protein	NA	NA	NA	NA
3080288:3081205	attR	NA	NA	NA	NA
WP_035366909.1\|3082498_3083329_+\|transposase	IS5-like element IS1032 family transposase	NA	NA	NA	NA
WP_157772018.1\|3083356_3083602_+	hypothetical protein	NA	NA	NA	NA
WP_039998243.1\|3083712_3084114_+\|transposase	transposase	NA	NA	NA	NA
WP_007396145.1\|3084110_3084458_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	1.5e-33	61.7
WP_039998242.1\|3084523_3086134_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	5.3e-102	43.8

Anti-CRISPR protein detection

Acr_ID: NZ_CP024644.1|WP_003618711.1|2470361_2470655_-|type-II-toxin-antitoxin-system-mRNA-interferase-toxin,-RelE/StbE-family

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP024644.1|WP_003618711.1|2470361_2470655_-|type-II-toxin-antitoxin-system-mRNA-interferase-toxin,-RelE/StbE-family

2470361_2470655_-

97 aa aa

2464566-2473654

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP024644_1	Orphan	1.8\|1563709\|18\|NZ_CP024644\|CRT	1563709-1563726	18	2465149-2465132	2

1. spacer 1.8|1563709|18|NZ_CP024644|CRT matches to NZ_CP024644 position: 2465149-2465132, mismatch: 2

tcccagacgctgtcccag	CRISPR spacer
tcccagacgatgtgccag	Protospacer
********* *** ****

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP024644

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information