CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP020998	Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6165 chromosome, complete genome	3 crisprs	WYL,cas3,DinG,DEDDh,csa3	6	9
NZ_CP020999	Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6165 plasmid pA, complete sequence	0 crisprs	NA	0	0
NZ_CP021000	Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6165 plasmid unnamed1, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP020998_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP020998_1

1214695-1214795

Orphan

Consensus_repeat	Method
GTGCAGGTGCGTCCTTCGGCCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP020998_1

>merge|NZ_CP020998|1|1214695-1214795|CRISPRCasFinder
GTCCAGGTGCGTCCGGCCGCCGACCAGATCGCCCAGCAGACCCTGGAACGCACCAGCGACATCCGCACCCTGGCCGCCGTGCAGGTGCGTCCTTCGGCCGA

>NZ_CP020998|1|1|1214695-1214795|CRISPRCasFinder
GTCCAGGTGCGTCCGGCCGCCGA	CCAGATCGCCCAGCAGACCCTGGAACGCACCAGCGACATCCGCACCCTGGCCGCC
GTGCAGGTGCGTCCTTCGGCCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020998.1\|WP_033481074.1\|1206395_1207943_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|294013
NZ_CP020998.1\|WP_007972046.1\|1203814_1204825_-\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|187552
NZ_CP020998.1\|WP_005912222.1\|1212768_1213785_-\|3-oxoacyl-ACP-synthase-III	unknown	unknown	gnl\|CDD\|181732
NZ_CP020998.1\|WP_022557916.1\|1202141_1202786_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225706
NZ_CP020998.1\|WP_003488515.1\|1225888_1226401_-\|protein-export-chaperone-SecB	unknown	unknown	gnl\|CDD\|180234
NZ_CP020998.1\|WP_003468167.1\|1203591_1203750_-\|DUF1328-domain-containing-protein	unknown	unknown	gnl\|CDD\|227774
NZ_CP020998.1\|WP_022557912.1\|1210458_1211361_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|179147
NZ_CP020998.1\|WP_022557904.1\|1221699_1223427_-\|ubiquinone-dependent-pyruvate-dehydrogenase	unknown	unknown	gnl\|CDD\|181661
NZ_CP020998.1\|WP_007974735.1\|1224847_1225873_-\|NAD(P)-dependent-glycerol-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|234629
NZ_CP020998.1\|WP_022557907.1\|1217942_1218695_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020998.1\|WP_022557903.1\|1223782_1224379_+\|Ax21-family-protein	unknown	unknown	gnl\|CDD\|275096
NZ_CP020998.1\|WP_007972041.1\|1209922_1210306_+\|YkgJ-family-cysteine-cluster-protein	unknown	unknown	gnl\|CDD\|223799
NZ_CP020998.1\|WP_046832247.1\|1205023_1206196_+\|serine-hydrolase	unknown	unknown	gnl\|CDD\|224594
NZ_CP020998.1\|WP_046832248.1\|1217228_1217840_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020998.1\|WP_022557909.1\|1215906_1217136_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340883
NZ_CP020998.1\|WP_046832292.1\|1218885_1220223_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_CP020998.1\|WP_022557913.1\|1207951_1209601_-\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|236443
NZ_CP020998.1\|WP_007966372.1\|1213886_1214207_-\|DUF4156-domain-containing-protein	unknown	unknown	gnl\|CDD\|372679
NZ_CP020998.1\|WP_022557905.1\|1220207_1221650_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP020998.1\|WP_022557910.1\|1215080_1215557_+\|tRNA-(cytidine(34)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|349967

Protein	Function_ID	Function_description	E-value
NZ_CP020998.1\|WP_033481074.1\|1206395_1207943_-\|transcriptional-regulator	gnl\|CDD\|294013	cd00383, trans_reg_C, DNA-binding effector domain of two-component system response regulators. Bacteria and some eukaryotes use two-component signal transduction systems to detect and respond to changes in the environment. The systems consists of a sensor histidine kinase and a response regulator. The former autophosphorylates a histidine residue on detecting an external stimulus. The phosphate is then transferred to an invariant aspartate residue in a highly conserved receiver domain of the response regulator. Phosphorylation activates a variable effector domain of the response regulator, which triggers the cellular response. This C-terminal effector domain belongs to the winged helix-turn-helix family of transcriptional regulators and contains DNA and RNA polymerase binding sites. Several dimers or monomers bind head to tail to small tandem repeats upstream of the genes. The RNA polymerase binding sites interact with the alpha or sigma subunit of RNA polymerase.	7.65381e-20
NZ_CP020998.1\|WP_007972046.1\|1203814_1204825_-\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|187552	cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid dehydrogenases (3b-HSD)-like, extended (e) SDRs. Extended SDR family domains belonging to this subgroup have the characteristic active site tetrad and a fairly well-conserved NAD(P)-binding motif. 3b-HSD catalyzes the NAD-dependent conversion of various steroids, such as pregnenolone to progesterone, or androstenediol to testosterone. This subgroup includes an unusual bifunctional 3b-HSD/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. It also includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7]. C(27) 3beta-HSD/HSD3B7 is a membrane-bound enzyme of the endoplasmic reticulum, that catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human NSDHL (NAD(P)H steroid dehydrogenase-like protein) cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	2.51368e-82
NZ_CP020998.1\|WP_005912222.1\|1212768_1213785_-\|3-oxoacyl-ACP-synthase-III	gnl\|CDD\|181732	PRK09258, PRK09258, 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed.	0
NZ_CP020998.1\|WP_022557916.1\|1202141_1202786_-\|hypothetical-protein	gnl\|CDD\|225706	COG3165, COG3165, Uncharacterized protein conserved in bacteria [Function unknown].	8.0745e-43
NZ_CP020998.1\|WP_003488515.1\|1225888_1226401_-\|protein-export-chaperone-SecB	gnl\|CDD\|180234	PRK05751, PRK05751, preprotein translocase subunit SecB; Validated.	3.40232e-69
NZ_CP020998.1\|WP_003468167.1\|1203591_1203750_-\|DUF1328-domain-containing-protein	gnl\|CDD\|227774	COG5487, COG5487, Small integral membrane protein [Function unknown].	0.00222793
NZ_CP020998.1\|WP_022557912.1\|1210458_1211361_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|179147	PRK00870, PRK00870, haloalkane dehalogenase; Provisional.	2.17567e-46
NZ_CP020998.1\|WP_022557904.1\|1221699_1223427_-\|ubiquinone-dependent-pyruvate-dehydrogenase	gnl\|CDD\|181661	PRK09124, PRK09124, ubiquinone-dependent pyruvate dehydrogenase.	0
NZ_CP020998.1\|WP_007974735.1\|1224847_1225873_-\|NAD(P)-dependent-glycerol-3-phosphate-dehydrogenase	gnl\|CDD\|234629	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase.	4.57783e-180
NZ_CP020998.1\|WP_022557903.1\|1223782_1224379_+\|Ax21-family-protein	gnl\|CDD\|275096	TIGR04273, activator_of_XA21-mediated_immunity_Ax21, sulfation-dependent quorum factor, Ax21 family. This family consists of proteins closely related to Ax21 (Activator of XA21-mediated immunity), a protein that is secreted by a type I secretion system (RaxABC), and that appears to be sulfated on an N-terminal region tryosine in a motif LSYN. Ax21 acts in a quorum-sensing system. Homologous peptide-mediated quorum-sensing systems appear to exist in other species, such as the emerging opportunistic pathogen Stenotrophomonas maltophilia. Intriguingly, the rice genome encodes a receptor (XA21) for this protein that triggers innate immunity. [Cellular processes, Pathogenesis].	7.42598e-108
NZ_CP020998.1\|WP_007972041.1\|1209922_1210306_+\|YkgJ-family-cysteine-cluster-protein	gnl\|CDD\|223799	COG0727, COG0727, Predicted Fe-S-cluster oxidoreductase [General function prediction only].	2.27067e-20
NZ_CP020998.1\|WP_046832247.1\|1205023_1206196_+\|serine-hydrolase	gnl\|CDD\|224594	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms].	3.01374e-34
NZ_CP020998.1\|WP_022557909.1\|1215906_1217136_-\|MFS-transporter	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.57122e-20
NZ_CP020998.1\|WP_046832292.1\|1218885_1220223_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	1.22678e-175
NZ_CP020998.1\|WP_022557913.1\|1207951_1209601_-\|AMP-binding-protein	gnl\|CDD\|236443	PRK09274, PRK09274, peptide synthase; Provisional.	0
NZ_CP020998.1\|WP_007966372.1\|1213886_1214207_-\|DUF4156-domain-containing-protein	gnl\|CDD\|372679	pfam13698, DUF4156, Domain of unknown function (DUF4156). The function of this family is unknown but members are annotated as putative lipoprotein outer membrane proteins.	1.76533e-09
NZ_CP020998.1\|WP_022557905.1\|1220207_1221650_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	4.00603e-32
NZ_CP020998.1\|WP_022557910.1\|1215080_1215557_+\|tRNA-(cytidine(34)-2'-O)-methyltransferase	gnl\|CDD\|349967	cd18094, SpoU-like_TrmL, SAM-dependent tRNA methylase related to TrmL. tRNA (Um34/Cm34) methyltransferase TrmL catalyzes the methyl transfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH at position 34 in both tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.	1.1762e-81

>NZ_CP020998.1|WP_007966372.1|1213886_1214207_-|DUF4156-domain-containing-protein
MRVLMLSVLVATTTAACTWVPIEQSGKGVRVLPAGPVPAGCQQQGEVVVTVKSKVGFYNRNPLRVQEELETLARNEAPGANANAVQAQGQPADGSQRFNAFRCPPR
>NZ_CP020998.1|WP_005912222.1|1212768_1213785_-|3-oxoacyl-ACP-synthase-III
MLFQNVSIAGLAHVDAPHTLTSKEINERLQPTYDRLGIKTDVLGDVAGIHARRLWDQDVQASDAATQAARKALIDAGIGIEKIGLLVNTSVSRDYLEPSTASIVSGNLGVGDHCVTFDVANACLAFINGMDIAARMLERGEIDYALVVDGETANLVYEKTLERMTSPDVTEEEFRNELAALTLGCGAAAMVMARTELVPDAPRYKGGVTRSATEWNKLCRGNLDRMVTDTRLLLIEGIKLAQKTFMAARQVLGWAVDELDQFVIHQVSRPHTAAFVKSFGIDPAKVMTIFGEHGNIGPASVPIVLSKLKELGRLKKGDRIALLGIGSGLNCSMAEVVW
>NZ_CP020998.1|WP_022557912.1|1210458_1211361_-|alpha/beta-fold-hydrolase
MNYPGYPFTPKRLDVRPGVAMSYLDEGPRDGEVVVMLHGNPSWSYLWRHLVSGLSDRYRCIVPDHIGMGLSDKPDDAPDAQPRYDYTLQSRVDDLDSLLRHLGITGAVTLAVHDWGGMIGFGWALSHHAQVKRLVITNTAAFPLPAEKPMPWQIAMGRHWRPGEWFIRTFNAFSSGASWLGVSRRMPSEVRRAYVAPYNNWRNRISTIRFMQDIPLSPADKGWSLLDRSAQALPAFADRPAFIAWGLRDICFDKHFLAGFRKALPQAEVTAFDDANHYVLEDKHEVLVPAIRAFLERNPL
>NZ_CP020998.1|WP_007972041.1|1209922_1210306_+|YkgJ-family-cysteine-cluster-protein
MAHPCLTCGACCAYFRVSFHWSEADPALGGRVPIELTEALRTHERVMRGTSQSQPRCIALDAEIGRYSRCSIHDRRPSSCAAVPASLEFGERSAQCDKSRLAHGLHALTDADWVGVDDAQRNPLPPV
>NZ_CP020998.1|WP_022557913.1|1207951_1209601_-|AMP-binding-protein
MTTLCNIAATLPQLARERPDQIAIRCPGGRGANGFAAYDVTLSYAELDARSDAIAAGLARHGVGRGARAVVMVRPSPEFFLLMFALFKAGAVPVLVDPGIDKRALKQCLDEAQPQAFIGIALAQLARRLLRWARSAKQIVTVGGRYGWGGVTLARVERDGAGAGSQLADTGPDDVAAILFTSGSTGVPKGVVYRHRHFVGQIELLRNAFGMQPGGVDLPTFPPFALFDPALGLTSVIPDMDPTRPGSADPRKLHDAINRFGVTQLFGSPALMRVLADHGQPLPDVRLATSAGAPVPPDVVAKIRALLPADAQFWTPYGATECLPVAAIEGRTLDATRAATEAGAGTCVGHVVPPNQVRIIAIDDAAIADWSGVRVLATGEVGEITVAGPTATDTYFNRDAATRIAKIRERCSDGSERVVHRMGDVGYFDAEGRLWFCGRKTHRVEAASGPLYTEQVEPVFNVHPQVRRTALVGVGAPGQQQPVLCVELQPGVSASAFAQVESDLRALGAAHPHTAGVARFLRHSGFPVDIRHNAKIGRETLAVWATQQR
>NZ_CP020998.1|WP_033481074.1|1206395_1207943_-|transcriptional-regulator
MRARYRLDDLRIDIARQRVERDGVALEVTGLSFRLLHYLLQQGQRVVDFDELIQHVWAPALVNEETVTQRVRLLRQALGDDSRQPRYLRSVRGQGYQLCVPVQQEQVPPAMRRHYAWPVAAVAALVCIGAGVIGWLQTRDAPPAAAALVQRAAYYAGIGQRDDNDRAIDLYGQRLQQAPDDRQAQLGLSRAYSARVCQYDGDAAYAARALQLANGVVTAQPDLAAAHAARGYALDCQGRNADALAAYEQALQLDADADAVRGSAAYLYERRGKLVQALTANLAVRDPTRVRFLPIQIASNLSLLGYAGAAETRYRTNFQLYPDDPFSNLAWPTFLFEHGRAAEAETALNASLNRGTAYAGLSVLQAELAWARGDESLARQAALHAIQLRPQGSFAQTVAWAVHAQPLPAPAVLRMRAQELLNSVERGGDPFDAIDAAVLLLCADAPEVAMRALQRAEAAGYRNAGYLRQSPLLKPLRRSPEFIALLARIDADLAAQRAQLRRRNLLPTDAVSGSN
>NZ_CP020998.1|WP_046832247.1|1205023_1206196_+|serine-hydrolase
MCRPSLLLSALLAASALHAAPPIAASPATTPTAAGPAKATLPPATPPVLGDGWPVASVATSGWNLALLAQMEQALADDLAPSTTSVLIVRDGVLVYEKYLGDATRETLHDTRSLTKSVTALLVGAAIERKLLPSAQAKVFDYFGDRQWQHPDPRKRAITVEDLLTMSSQLECNDDNEFSAGNEERMYLSADWTQFALDLPIRGYAPWMQRSEHSPYGRAFSYCTAGSFLLGALLEKATGQPLRAFAGEVLETPLGIKNVQWTVSSEGVGMGGGGTRYRSRDLAKLGQLLVAQGRWQGRQVIPADWIRAMTRVQAQAREDADYGYLTWHFRFPVHGVQRDTWAMSGNGGNYVFVVPAERLVVVLTRSAYNTRQMHQQSQRVLTDYVLKALP
>NZ_CP020998.1|WP_007972046.1|1203814_1204825_-|NAD-dependent-epimerase/dehydratase-family-protein
MKVLVTGGGGFLGQALCRGLRARGHEVVSFQRGDYPVLQRLGVGQIRGDLADPQAVRHAFAGIDAVFHNAAKAGAWGSYDSYHQANVVGTQNVIEACRANGVPRLIYTSTPSVTHRATNPVEGLGADEVPYGDDLRAAYAATKAIAERAVLAANDAQLATVALRPRLIWGPGDNHLLPRLAARARAGRLRMVGDGGNLVDSTYIDNAAQAHFDAFQHLAVGAACAGKAYFISNGEPLPMRELLNRLLAAVDAPAVTRSLSFNTAYRIGAVCETLWPLLRLPGEVPLTRFLVEQLCTPHWYSMEPARRDFGYVPRISIEEGLQRLRSSSSNDIAITR
>NZ_CP020998.1|WP_003468167.1|1203591_1203750_-|DUF1328-domain-containing-protein
MLHYAIIFFVIAIIAAVLGFSGIAGAATNIAWILFVVFLILAVISMFRRGKV
>NZ_CP020998.1|WP_022557916.1|1202141_1202786_-|hypothetical-protein
MPGSLFNSLKPLAGQALQAALNRALALDPDTRDALLPLEGQRIALTLEAPALALQIRVHERRLLVGPVDQAQEPDLAVRSSLAGLLGQLPLLANARRTGAPAGRLKVSGDAELARQLQQLAGRFDPDWQLPFVSVFGDILGVQIAGAVRAALQQARRSAVDLAQSAAEFVTEESRDVVPRAELEAFHDDVDELRDDVERLAARVSRLRTSGGAA
>NZ_CP020998.1|WP_022557910.1|1215080_1215557_+|tRNA-(cytidine(34)-2'-O)-methyltransferase
MSAPVLDVILFQPEIPPNTGNVIRLCANTGARLHLIEPLGFDLSDKQLKRAGLDYHEYAPLHVHADLPSALAAIAPKRVFALSTRSTVRYDTPQFADGDAFLFGPETRGLPAEVLESIPPQHRLRLPMRPDNRSLNLSNTVAVMVFEAWRQWNFAGGQ
>NZ_CP020998.1|WP_022557909.1|1215906_1217136_-|MFS-transporter
MPMTKARPRGTRALEALHFSVADVQDGLGPFLSVFLQSKGWSVAAIGTVMSVGGIAGMLATTPAGALVDATRRKRAVVVIGCLAILLATALIWLQPTSSGVVAAQIASALAAAGIGPALTGITLGLVHARGFDHQLARNQVANHAGNVLAAVLAGWLGWRYGFAAVFLLTAFFGVLALMAVLAIPAAAIDHRAARGLASTNGGDALSGWRVLLTCRPLALLAVTLGLFHLGNAAMLPLYGMAIVAAHAGDPSALTATTIVVAQATMVVIALLAMRWIRVHGHWWVLLVAFMALPLRALVAASVIHGWGVFPVQILDGLGAGLQSVVVPALVARLLQGTGRVNVGQGAVMTVQGVGAALSPAFGGWLAHAFGYRIAFLSLGAIALLAVALWAGCRGMLQAGASVQAETML
>NZ_CP020998.1|WP_046832248.1|1217228_1217840_-|hypothetical-protein
MHWVDPDFLPATRGTLARFLLNPKADIDGLLLTDGTEVHTPPHLSEALLKALKPGSALTVRGLKPRDVEMLVALAIDPEGGKRILDEGPHGPHAKPKPKPPGKPTKPEVAQHSGTITRLLHGPHGQVHGVLLDDAVTVRFPPHAGGDFAKQLVVGKPLVAEGETKATPHGVLIHAHALGGKAATLKQIEHPPRGPAHKPKPKH
>NZ_CP020998.1|WP_022557907.1|1217942_1218695_-|hypothetical-protein
MMRQTVLAIALACTIGAAAAQVAAPPPPPAPNGPIGGPPAPPTPVAATPVSVSGTVERFLLNPNGDVDGLWLRDGTQVGFPPHLSSEVKAAVRAGDSVVVKGFRLGNLPVLQVSSIRSGRSGREVVDRPPTFGAAPPPPPTPGQLTPLQSDGTIHRLVYGPAGEVNGALVSDGTVVRMPPHLALQFADLLRVGAPLSASGLGVATPDGRAIEATQLGRDRSSLRALFTAPRPDGPLPPPPPGAPVPPAGR
>NZ_CP020998.1|WP_046832292.1|1218885_1220223_-|sigma-54-dependent-Fis-family-transcriptional-regulator
MARILIIDDDAAFRTTLQATLRSLGHTAVAAENGPDGLARLSEGGIDMAFVDFRMPGMDGIAVLRARLDDAQVPLVMLTAHVSSGNTIEAMTLGAFDHLVKPVGRADIVEVVERALLGRADARAAATDALSAPAEDDDALVGHSPAMRTVHKRIGLAAASDLPVLITGETGTGKELAARALHRASPRASAPFVAVNCAAIPLELMESELFGHRKGAFSGASSDRRGLIREADGGTLFLDEIGDMPLPMQAKLLRFLQEGEVTPLGGSGPQKVDVRVLAATHRDLAACVADGRFRSDLRYRLNVVPIELPPLRERGQDILLLAQHFLSANAAHAQSLSPAAQERLLAHRWPGNVRELRNVMQRSQVLVRGASIDAADLEEALGEAGEAPPNVASALTGTLPEAVAQLEKQMIQSALEQSQGNRAEAARRLGIHRQLLYRKLEEYGL
>NZ_CP020998.1|WP_022557905.1|1220207_1221650_-|HAMP-domain-containing-histidine-kinase
MPRSLLRQLLLIWMVIVAACLGVATMLYGLYRQTEGVRLEEARQQLGGQCARIVQRYAGASEAARRGDDGVGLAAVVVQLVLADAPGVEGGVWDLHKGFVAYAYPTYDGSDHKTDIPAAEWANIVNTAQQSVTTKQAAQYRRDGRREVLLISACPLASGSAAWTMTRVPASKADAWRPLVVGMLLIFAMVAISAIALGVLVRRWSQRLQRIQQALAADTETPHIPPTGTPELDRLGAAVNDYAQRNAQALAQTRRLADELSRHERLAALGRMTATVAHEIRNPIATMRLALENEIARDDATPDDAAHGELMLGQIRRLDGVVESLLGMVQPIRLHLETVVVQDWLATLLEPSPLPPGTPPPRVLLPAAPLRWTLDPQQLGRAVHNLLRNAAQHADPGSEVTLQAEAVEGILQLQVCNRGAPIAEPIAAHLFEPFVSGRADGNGLGLALVREIARAHGGHARYAHADGLTHFILELPWRVS
>NZ_CP020998.1|WP_022557904.1|1221699_1223427_-|ubiquinone-dependent-pyruvate-dehydrogenase
MAKKRTLARFLAETLQSAGVERIWGVTGDSLNGLTDALREMQTIEWMHVRHEEVAAFAAGAEAAVTGELAVCAGSCGPGNLHLINGLFDCHRSRQPVLAIAAHIPSSEIGLSYFQETHPQELFRECSHFVELVTNPAQLPEVLHRAMRSAILQQGVAVVVIPGDIALLEVDKHVSSAWPALRQPRVLPAAEDVQQLAELLQQSKAVTVLCGSGCAGAHDAVVALADTLGAPVVHALRGKEYVEWDNPFDVGMTGLIGFSSGYHAMLNCDTLLMLGTDFPYRQFYPKDATIVQVDRDPSALGRRTPLQLGIAADVGETIAALLPQLQRREERGFLEKSLAHYRKAREGLDDLAVPADPGEPLHPQFVTRLISQIADQDAVFTCDVGTPTVWAARYLRMNGKRRLLGSFNHGSMANAMPQALGAQAAFPGRQVISLSGDGGFAMLMGDFISLAQLNLPVKVVVFNNASLGFVAMEMKAAGYLDTGTELRNPDFAAMSNAMGILGIRVDESSQLERALRQVFAHSGPALVDVRVATQELAVPPAIKLEQAKGMGLYLLKAVMSGRGDEVIALVKTNLR
>NZ_CP020998.1|WP_022557903.1|1223782_1224379_+|Ax21-family-protein
MKTSLLALGLLAALPFAASAAENLSYNFVEGDYVRTPTEGRDADGWGVKASYAIAPNFHVFGDYSKQNADDNNNVFENTDSDFQQWGVGVGFNHEIATSTDFVARVAYRKLDLDTPNINFDGYSVEAGLRNAFGEHFEVYALAGYEDFSKKRGIDIGDNFYGRLGAQVKLNRNWGINGDIRMDGDGNKEWSVGPRFSW
>NZ_CP020998.1|WP_007974735.1|1224847_1225873_-|NAD(P)-dependent-glycerol-3-phosphate-dehydrogenase
MSDLTHKIAVLGAGSWGTALAALLARHGHPTVLWGRDAAMVDTIDRTHENARYLPGIALPDSLRATTDLQAAVADATWILVVVPSHAFTETIRLIAPLRPAGAGVAWATKGFEPGSGRFLHEVARDILGPSVPLAVVTGPSFAKEVTLGLPTAITVHGDDAAFAQVVADAMHGPTFRAYTGDDMVGAELGGAMKNVLAVATGVADGMQLGLNARAGLITRGLNEMLRLAAVIGARPETLMGLAGLGDLVLTCTGDLSRNRRLGLALGRGQSLDEAIREIGQVVESVQTADEVMRQAEHHGIELPISNAVRAVLHGEITPEAGLKELLARERKPEYPQTLFT
>NZ_CP020998.1|WP_003488515.1|1225888_1226401_-|protein-export-chaperone-SecB
MSDEILNGAAAPADAAAGPAFTIEKIYVKDVSFESPNAPAVFNDANQPELQLNLNQKVQRLNDNAFEVVLAVTLTCTAGGKTAYVAEVQQAGVFGLVGLDPQAIDVLLGTQCPNILFPYVRTLVSDLIQAGGFPPFYLQPINFEALYAETLRQRQNEGTSLADSEPAGNA

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Crispr_ID: NZ_CP020998_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP020998_2

1427844-1428191

Orphan

Consensus_repeat	Method
GCCGTTGACCGTTTCCAN	CRT
GATGCTGCCGTTGACCGTTTCCACCCCGCC	CRISPRCasFinder
GCCGTTGACCGTTTCCA	PILER-CR

6 spacers

WYL

The CRISPR arrays of NZ_CP020998_2

>merge|NZ_CP020998|2|1427844-1428191|CRT,CRISPRCasFinder,PILER-CR
GCCATTGACCGTCTCGATGCCCTTGCCGAGCTCGGTTCCCACCAGCCCGATGCTGCCGTTGACCGTTTCCACCCCGCCACTGATCTGGCTGCCGCGCTCGGCGAGGATGCTGCCGTTGACCGTTTCCAGCCCGCCGGACACGATCACCTTCTGGCCCAGCGTGATCGAGCCGTTGACCGTTTCCACGCCCCCGGTACGCGCGTTGTCGCCGATGCGGATGCCGCCGTTGACGGTTTCCACATTCTTGGTTTGCGCACCGGCACCGATCTCGATGGAGCCGTTGACCGTTTCCAGGGCGCCATAGGTCTTGCCGGCATCTGCGCTGATCTTGCCGTTGACCTTGCTGAC

>NZ_CP020998|2|1|1427844-1428191|CRT
GCCATTGACCGTCTCGAT	GCCCTTGCCGAGCTCGGTTCCCACCAGCCCGATGCT
GCCGTTGACCGTTTCCAC	CCCGCCACTGATCTGGCTGCCGCGCTCGGCGAGGATGCT
GCCGTTGACCGTTTCCAG	CCCGCCGGACACGATCACCTTCTGGCCCAGCGTGATCGA
GCCGTTGACCGTTTCCAC	GCCCCCGGTACGCGCGTTGTCGCCGATGCGGATGCC
GCCGTTGACGGTTTCCAC	ATTCTTGGTTTGCGCACCGGCACCGATCTCGATGGA
GCCGTTGACCGTTTCCAG	GGCGCCATAGGTCTTGCCGGCATCTGCGCTGATCTT
GCCGTTGACCTTGCTGAC

>NZ_CP020998|2|2|1427892-1428143|CRISPRCasFinder
GATGCTGCCGTTGACCGTTTCCACCCCGCC	ACTGATCTGGCTGCCGCGCTCGGCGAG
GATGCTGCCGTTGACCGTTTCCAGCCCGCC	GGACACGATCACCTTCTGGCCCAGCGT
GATCGAGCCGTTGACCGTTTCCACGCCCCC	GGTACGCGCGTTGTCGCCGATGCG
GATGCCGCCGTTGACGGTTTCCACATTCTT	GGTTTGCGCACCGGCACCGATCTC
GATGGAGCCGTTGACCGTTTCCAGGGCGCC

>NZ_CP020998|2|1|1427898-1428136|PILER-CR
GCCGTTGACCGTTTCCA	CCCCGCCACTGATCTGGCTGCCGCGCTCGGCGAGGATGCT
GCCGTTGACCGTTTCCA	GCCCGCCGGACACGATCACCTTCTGGCCCAGCGTGATCGA
GCCGTTGACCGTTTCCA	CGCCCCCGGTACGCGCGTTGTCGCCGATGCGGATGCC
GCCGTTGACGGTTTCCA	CATTCTTGGTTTGCGCACCGGCACCGATCTCGATGGA
GCCGTTGACCGTTTCCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020998.1\|WP_007968187.1\|1433776_1435117_+\|outer-membrane-protein-transport-protein	unknown	unknown	gnl\|CDD\|367457
NZ_CP020998.1\|WP_022557794.1\|1419920_1420994_+\|glycoside-hydrolase-family-5-protein	unknown	unknown	gnl\|CDD\|365907
NZ_CP020998.1\|WP_022557797.1\|1416490_1417972_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|273553
NZ_CP020998.1\|WP_046832284.1\|1425642_1427439_-\|M28-family-peptidase	unknown	unknown	gnl\|CDD\|349910
NZ_CP020998.1\|WP_022557799.1\|1411305_1411686_+\|proteinase-inhibitor	unknown	unknown	gnl\|CDD\|288556
NZ_CP020998.1\|WP_046832285.1\|1424889_1425333_+\|peptidase	unknown	unknown	gnl\|CDD\|379323
NZ_CP020998.1\|WP_022557798.1\|1411888_1416361_+\|glutamate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|236968
NZ_CP020998.1\|WP_022557788.1\|1429757_1431281_+\|S41-family-peptidase	unknown	unknown	gnl\|CDD\|223864
NZ_CP020998.1\|WP_046832286.1\|1418552_1419611_-\|NAD(P)-dependent-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176186
NZ_CP020998.1\|WP_033481293.1\|1428417_1429653_+\|peptidoglycan-DD-metalloendopeptidase-family-protein	unknown	unknown	gnl\|CDD\|227278
NZ_CP020998.1\|WP_022557787.1\|1431443_1432436_-\|D-2-hydroxyacid-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|240646
NZ_CP020998.1\|WP_033481283.1\|1435381_1436083_+\|2OG-Fe(II)-oxygenase	unknown	unknown	gnl\|CDD\|379309
NZ_CP020998.1\|WP_033481282.1\|1437518_1437884_-\|DUF1330-domain-containing-protein	unknown	unknown	unknown
NZ_CP020998.1\|WP_022557793.1\|1421770_1422823_+\|glycoside-hydrolase-family-5-protein	unknown	unknown	gnl\|CDD\|365907
NZ_CP020998.1\|WP_007968176.1\|1423460_1424594_+\|glycoside-hydrolase-family-5-protein	unknown	unknown	gnl\|CDD\|365907
NZ_CP020998.1\|WP_022557796.1\|1418121_1418397_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020998.1\|WP_022557782.1\|1437932_1438658_-\|YafY-family-transcriptional-regulator	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|225253
NZ_CP020998.1\|WP_022557784.1\|1436267_1437395_+\|PA0069-family-radical-SAM-protein	unknown	unknown	gnl\|CDD\|275263
NZ_CP020998.1\|WP_003482177.1\|1432864_1433557_-\|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl\|CDD\|366759
NZ_CP020998.1\|WP_033481284.1\|1432435_1432756_-\|DUF1820-family-protein	unknown	unknown	gnl\|CDD\|370154

Protein	Function_ID	Function_description	E-value
NZ_CP020998.1\|WP_007968187.1\|1433776_1435117_+\|outer-membrane-protein-transport-protein	gnl\|CDD\|367457	pfam03349, Toluene_X, Outer membrane protein transport protein (OMPP1/FadL/TodX). This family includes TodX from Pseudomonas putida F1 and TbuX from Ralstonia pickettii PKO1. These are membrane proteins of uncertain function that are involved in toluene catabolism. Related proteins involved in the degradation of similar aromatic hydrocarbons are also in this family, such as CymD. This family also includes FadL involved in translocation of long-chain fatty acids across the outer membrane. It is also a receptor for the bacteriophage T2.	1.79229e-134
NZ_CP020998.1\|WP_022557794.1\|1419920_1420994_+\|glycoside-hydrolase-family-5-protein	gnl\|CDD\|365907	pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5).	1.78184e-61
NZ_CP020998.1\|WP_022557797.1\|1416490_1417972_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|273553	TIGR01318, glutamate_synthase_small_subunit_gltD, glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.	0
NZ_CP020998.1\|WP_046832284.1\|1425642_1427439_-\|M28-family-peptidase	gnl\|CDD\|349910	cd05660, M28_like_PA, M28 Zn-peptidase containing a protease-associated (PA) domain insert. Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions. This subfamily is composed of uncharacterized proteins containing a protease-associated (PA) domain insert which may participate in substrate binding and/or promote conformational changes, influencing the stability and accessibility of the site to substrate.	9.33456e-123
NZ_CP020998.1\|WP_022557799.1\|1411305_1411686_+\|proteinase-inhibitor	gnl\|CDD\|288556	pfam11720, Inhibitor_I78, Peptidase inhibitor I78 family. This family includes Aspergillus elastase inhibitor and belongs to MEROPS peptidase inhibitor family I78.	1.35722e-19
NZ_CP020998.1\|WP_046832285.1\|1424889_1425333_+\|peptidase	gnl\|CDD\|379323	pfam13670, PepSY_2, Peptidase propeptide and YPEB domain. This region is likely to have a protease inhibitory function (personal obs:C Yeats). The name is derived from Peptidase & Bacillus subtilis YPEB.	2.56266e-05
NZ_CP020998.1\|WP_022557798.1\|1411888_1416361_+\|glutamate-synthase-large-subunit	gnl\|CDD\|236968	PRK11750, gltB, glutamate synthase subunit alpha; Provisional.	0
NZ_CP020998.1\|WP_022557788.1\|1429757_1431281_+\|S41-family-peptidase	gnl\|CDD\|223864	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane].	2.31526e-128
NZ_CP020998.1\|WP_046832286.1\|1418552_1419611_-\|NAD(P)-dependent-alcohol-dehydrogenase	gnl\|CDD\|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	0
NZ_CP020998.1\|WP_033481293.1\|1428417_1429653_+\|peptidoglycan-DD-metalloendopeptidase-family-protein	gnl\|CDD\|227278	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning].	3.65433e-91
NZ_CP020998.1\|WP_022557787.1\|1431443_1432436_-\|D-2-hydroxyacid-dehydrogenase-family-protein	gnl\|CDD\|240646	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases. Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric.	1.77353e-143
NZ_CP020998.1\|WP_033481283.1\|1435381_1436083_+\|2OG-Fe(II)-oxygenase	gnl\|CDD\|379309	pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily. This family contains members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily.	1.17536e-07
NZ_CP020998.1\|WP_022557782.1\|1437932_1438658_-\|YafY-family-transcriptional-regulator	gnl\|CDD\|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	2.89977e-55
NZ_CP020998.1\|WP_022557793.1\|1421770_1422823_+\|glycoside-hydrolase-family-5-protein	gnl\|CDD\|365907	pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5).	4.64675e-58
NZ_CP020998.1\|WP_007968176.1\|1423460_1424594_+\|glycoside-hydrolase-family-5-protein	gnl\|CDD\|365907	pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5).	9.71902e-58
NZ_CP020998.1\|WP_022557784.1\|1436267_1437395_+\|PA0069-family-radical-SAM-protein	gnl\|CDD\|275263	TIGR04470, hypothetical_protein_ALIPUT_00462, radical SAM mobile pair protein B. Members of this family are the downstream member (B) of a pair of tandem-encoded radical SAM enzymes. Most of these radical SAM gene pairs have an additional upstream regulatory gene in the MarR family. Examples of high sequence identity (over 96 percent) from cassettes in several Treponema species of the oral cavity to those in multiple Firmicutes in the gut microbiome suggest recent lateral gene transfer, as might be expected for antibiotic resistance genes. The function is unknown.	1.44405e-23
NZ_CP020998.1\|WP_003482177.1\|1432864_1433557_-\|rhomboid-family-intramembrane-serine-protease	gnl\|CDD\|366759	pfam01694, Rhomboid, Rhomboid family. This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite.	1.19314e-25
NZ_CP020998.1\|WP_033481284.1\|1432435_1432756_-\|DUF1820-family-protein	gnl\|CDD\|370154	pfam08850, DUF1820, Domain of unknown function (DUF1820). This family includes small functionally uncharacterized proteins around 100 amino acids in length.	2.27778e-52

>NZ_CP020998.1|WP_046832284.1|1425642_1427439_-|M28-family-peptidase
MPRKILLCLATTLALAGCKREPADAPSAPAAQTPTESAPSAPVSRHTFSPDMTAGDFAELVKTLASDDFEGRGPGTPGEEKTVTYIRDQMQRIGLQPGNGDSWFQEVPMVETTADASTAPSLRSGEQTRTLAFGTDIVVGTRTGQAEVKLDNSELVFVGYGVDAPEQQWNDYAGQEWKGKTVVMFVNDPGFHTDDAKLFDGKRMTYYGHWTYKFEEAARKGAAAALIVHDTPGASYGWDVVKNSWSGPQYDLPAKDDPDPRLPVQGWISAETARQLFANAGLDLAQAYKDASKRGFKPVPLKASWSVDLKSTIAAKTSRNVVGVLPGTSHADEAVLYMAHWDHLGKHPGESGDNIYNGAVDNATGVAGILEIADAFAHQDPKPARSVVFLAVTLEESGLLGSKYYVANPSFPLDKIAAVINLDAMSVAGRARDVTVVGMGSSELEDILKPIAAMQGRTLHAEATPQNGSYFRSDHFNFAKAGVPALYADGGEDLREGGTAAGRAAAEDYGRHRYHAPGDEYDAATWKLDGTIEDLQVVYGVGKEVAAGERWPNWYPGNPFKAARDRMMAGRPGTSAASAQPADAASTATQTNTANPPR
>NZ_CP020998.1|WP_046832285.1|1424889_1425333_+|peptidase
MTQRLMKTALIGVLALVSQGALAQAADKPAKALTSGEFTSMLTAKGYTKVHDVKFEHGVWTADARSGDGKDVDVHIDPVTGRVYGDQTTSKLSEADVRASLSTGGYADVHDLKFTNGLWKADAKRNGQKVELHVDPEDGHVVSVDND
>NZ_CP020998.1|WP_007968176.1|1423460_1424594_+|glycoside-hydrolase-family-5-protein
MSAVCFSLRTLLRSTLLFIVFGSLPLAHAQTRALTYAGVNLSGAEYASSKKPGVLNKDYMYAAASDYTYFAGVGMNTIRLPILWERLQPTAGGELDPAQLALLQQAVARAKAAGMYLVIDIHNYAKYYGYKIGSPEVPVATFTDLWRRLALVFNSDNAVMFGLMNEPNNISASEWAGAAQAAIDAIRRTGANNLILVPGALWTGAHSWYSTTNDGYSNATALTSIYDPLDRYAFEVHQYLDADSSGTSSTCVSSTIGAERLRNFTQWLRTNRKRGFLAEFGTANNAVCNQALQGMLSHMETNADVWLGWTWWAAGSWWNLSYAYSVHPNKDGTDKPQMAILSPQAALATRAPVAAAAARTSAASTSATSVSVARTTR
>NZ_CP020998.1|WP_022557793.1|1421770_1422823_+|glycoside-hydrolase-family-5-protein
MKSLTTHTRRLRCRALSFLLLATMPLAQAQSATGLKYAGVNLSGAEIKSSQKPGVLNIDYRYPAADEYAYFAGKHMNTVRLPILWERLQPRAGGELDPAQLALIRQAVANAKAAKMYVIVDVHNYAKYYGHTIGSTKVPFSTFNDLWRRLAIAFKSDNAVIFGLMNEPYDIDPQAWATAAQASIDTIRKTGATNLILVPGALWTGAHSWYSTVAGQSNAVAMAFIRDPLNRYAIEAHQYLDADSSGTSGGCVSATVGVERLRSFTEWLRLNKKRGFLAEFGTGNTVTCNLALNGMLGYMESNGDVWMGWSWWAAGAWWSGAYPFNVQPDAQGRDKPQMSILSPRARRITD
>NZ_CP020998.1|WP_022557794.1|1419920_1420994_+|glycoside-hydrolase-family-5-protein
MFHTPPHLSRLRTAALALTLIAAIPLVQAKEPAGPKKESAGLKYVGVNLSGAEFNSRKKPGTLFKDYTYPAASDFSYFAGKGMNTIRLPFLWERVQPELNGPLDQAQLGLIKKSLEAAKANKQYLILDLHNYATYSGKRIGTSDVPASALADLWRRLALEFKDDKAVIFGLMNEPNGISAPDWANAAQGTINAIRKTGAKNLILVPGTAYTGAHSWRSTSYGVSNAKALEILKDPGNNLAFEAHQYLDKDYSGTKPVCTSDSVGQEKLQGFTSWLRENKQKGFLGEFATANNPVCDKALEGMLTYMEKNSDVWLGWTWWAAGSWWKPDYPFTVQPGKDGSDKPQMAILSKYARRAGK
>NZ_CP020998.1|WP_046832286.1|1418552_1419611_-|NAD(P)-dependent-alcohol-dehydrogenase
MSTAHAYAAQAADQPLAPFVFERRAPGPNDVQIDIAYCGVCHSDLHTARNEWHNTLYPSVPGHEIVGRVTAVGNAVTGFKVGDLAGVGCMVDSCRSCASCQEGEEQYCEAGFTGTYNGPMFGGGENTYGGYSDHIVVDQKYVLRITHSDNLAAVAPLLCAGITTYSPLAHWKVGPGQKVGVVGLGGLGHMAVKIAKAMGATVVLFTTSESKRADALRLGASEVVISKDEAQMAAQYNTLDFILNTVAAPHNLDPFLNALKRDGAMVLVGVPEQSHPSPAVFNLIMKRRTLAGSLIGGIRETQEMLDFCAKHNIVSDIETIRADQINAAYERMLKSDVKYRFVIDMATLDKAA
>NZ_CP020998.1|WP_022557796.1|1418121_1418397_+|hypothetical-protein
MVTLDLFGAGAIHVLDHRTGVSVVAPSSLRAHLLGAAQSLMDVGIHSPILFGLLFEHYGRFALSPNDLMTRAALSQTPSDLAAALVKEAAS
>NZ_CP020998.1|WP_022557797.1|1416490_1417972_+|FAD-dependent-oxidoreductase
MSRKQAFQFLDLPRTMPTRIPVELRTSGDWGELYGRFDKADAQYQAGRCLDCGNPYCSWKCPVHNAIPQWLQLVQENRIEEAAALCHSTNPLPEVCGRVCPQDRLCEGSCTLEEFGAVTIGAVEKYIVDTAFKMGWRPDLGNVQPSGHRVAVIGAGPAGLACADRLARAGIEAVVYDRYEQIGGLLQFGIPSFKLDKSVIGKRREILEGMGVQFRLGVEIGKDISIEQLLAEYDAVFLGTGAYRYTDGGLPGQDLKNVLPALPFLVQNSRIVSGNDPHGRPIAGWEDQLALPDLTGKRVVVLGGGDTGMDCVRSAIRLGAAKVTCAYRRDEASMPGSAREVANAREEGVRFLFNRQPLSIESGADDEAIGVTVVETKLGEPDASGRRNAVPVEGSESLLEADVVIIAFGFSPTLPDWLASQGVEAGSNGRIVAPADGNGRLPYQTTNPRLFAGGDCVRGADLVVTAVAEGRDAAGSIVQLLGVKAQVKEPAAA
>NZ_CP020998.1|WP_022557798.1|1411888_1416361_+|glutamate-synthase-large-subunit
MAPRTRQGLNDDGLYNSVRDERDACGFGMVAQLDDQPSRALVDTAIAALSRMTHRGGVAADGLTGDGCGLLIRKPDAFLRGLARDAGITLGTRYAAGVVFLPLDEADAARCRAELEAQLHSAGVHLRGWRVVPTDDSVCGQLARDTLPRIEQVFVDAGAEQTEDGFTLALFLARRRAEQALHAVENFYVTTLSPNGISYKGMVLPDKLSTFYPDLQRSDLSSSAIVFHQRFSTNTLPRWPLAHPFRLLAHNGEINTIEGNRRWAQARSKVWQTPRFDIAQFDPVISMHGSDSQSLDNMLELLIAGGMDLLQALRILVPPATQSLEFKDADLAAFYEFYGLNTEPWDGPAGIVACDSRYAACMLDRNGLRPARWMLTSDRHFLVASEAGVWELPAERITRKGKLGPGEMMAIDLKRGDLLDSDAIDRINRARAPYKQWLQQGVTYLQTELIDPSLVEEPFSEQTLRSYHKLFQLSTEEVEQVLRPLAETEQEATGSMGDDTPMAVLSRQTRPLYDYFRQAFAQVTNPPIDPLREGIAMSLTTQLGKETNIFHAGAETVNHVILNSPVLSQRKLRQLLKMEQYVERNRLIDLSYSLEEGLKAGLERICQEVEAAARAGAVMLLLSDRYPVPDRPMAHALLATGAVHHHLCKVGLRCDVNLIIETGTARDPHHMACLLGVGATAVYPYLAYQTLFDLGRRGILQLSKGGEQSQIGRRYRKGIYKGLSKIISKMGICTIASYRGAQLFEIVGLDPDVVDLCFADTPARIGGVDLARLDTEARELTVRAWNDQLKPEVGGLLKYVHGGEYHMYNPDVVMTLQRATRTGDAGDWQKYVDAVHARPASTLRDLVQLKRADTPTPLDDVAPAEDVLRRFDSAAISLGALSPEAHEALAIAMNRLGGRSNSGEGGEDPARYGTEKRSKIKQVASGRFGVTPEYLVNAEVLQIKVAQGAKPGEGGQLPGHKVNELIARLRYAKPGIGLISPPPHHDIYSIEDLAQLIYDLKQVNPTALVSVKLVAHAGVGTIAAGVVKAGADLITVSGHDGGTGASPVSSIRYAGVPWELGVAESHQALVANDLRERTILQTDGGLKTGLDVVKAALLGADSFGFGTAPMIVLGCKYLRICHLNNCATGVATQDERLRAGYFTGLPERVEHFFRLLAEEVRQWLSYLGVRSLDEIVGRTDLLEQLDVSPRPGVKVDLSRLLTHAQYDGSHCAAQRLYESPDSLATQMDGLLADAIANKRGGDHRFLIHNTDRSIGARLSGAIARAHGNHGMSDAPLNLRFRGTAGQSFGAFNAGGLQLELEGEANDYVGKGMAGGRLVVRPPRGARFEARNTPIVGNTCLYGATGGELFAAGRAGERFAVRNSGALAVLEGAGDHCCEYMTDGVVLVLGKVGLNFGAGFTGGLAYVLDIERDFVDRYNHELIDIHRVSAEGFENHRQHLHTLISRHRELTGSIWAQQILDEFRDYIGKFWLVKPKAASIESLTESLRRAA
>NZ_CP020998.1|WP_022557799.1|1411305_1411686_+|proteinase-inhibitor
MRAVLPIARLACTLVVLTALTACNKPQPDEQEAVTANAQHAAEQAAAPAPDAAPEAPPIGSCDATQVQSLVGQPLTDAVGEQARSDAGAKSVRVLKPGQMTTMEFNGERLNLEVDAKNVISSVRCG
>NZ_CP020998.1|WP_033481293.1|1428417_1429653_+|peptidoglycan-DD-metalloendopeptidase-family-protein
MWLAVGVLACTLLGSMGASAQSQRETERKLQQLRDELKTISADRRELEGKRGTAAQQLRQADEKVAKTARALSETEAAMRAQEQHLSSLQQERAQLQRGLQSQRTQLAALLRAADQVGRNAPLKVLLSQDTVGDATRMLADHRYVQNARAQRIHALTTQLDALATVEQDIATRRQALDAARAQQKAQAATLQKDRSQQAATVAQLDDRYKQRAEREKAIGQDAKALEQLLANLRAAAAKAEAERRAAARRAAAEAAAQAKRSKTERSDRPGKTPPKVIANAPAPKVGGLSWPVAGNLLARFNATLPDGHTSKGVLIGAPKGTTVTAVADGTVVFSDWMTGYGMILIVDHGNGYMSLYAHNDTLLRDAGASIKRGDAVAKVGSSGGQGVPALYFELRRNGQPVDPSSWLQRR
>NZ_CP020998.1|WP_022557788.1|1429757_1431281_+|S41-family-peptidase
MRVAALSVALSLALFASPGWAQKAGPAAAQASADDPEANEAAVSKVPLDEIRRFVAVYNAVKQAYVDPVEDKKLMHAAVRGLLSDLDPHSTYFDKEDAEAFDEQATGAYDGIGVELLQQQDNTLKVIAPIDDTPAARAGIRAGDVIVAIDGKPIDASKAMEPLRGESGSKVVLTIMRDKTPKPFDVTLQRETIRVASVRSKLLEPGYGYIRISTFQADTGADFQKNLKQLQAGGKLRGLVLDLRSNPGGLLTSAVQVADDLLDKGNIVSTRGRISISDAKFDATPGDLLNGAPVVVLVDAGSASASEVLAGALRDNKRARIIGSRTFGKGSVQTVLPLDNGDSVKLTTARYYTPSGKSIQASGIVPDVLLAPEPQPGDADAPASLTDYSEATLPGHLRGDDEGEEGYSAGDVLPGDGPITEALAELKQPGAAAKAQAARKAKAQAAQKAKAAKTGAEPKPAAARPATTDKPRSAEPAGKAKPATAPAAPAEPVQPTPPADKPAEPVN
>NZ_CP020998.1|WP_022557787.1|1431443_1432436_-|D-2-hydroxyacid-dehydrogenase-family-protein
MRVVVPDDYQGAVARLPCLQQLQGHQVQVLGALDEALDARAACLADADALVLIRERTRVDAALLQRLPRLKLISQTGRVGAHVDVAACTALGVAVAEGVGSPVAPAELTWALILSASRRLADYQHALQQGRWQALGDPGLGRVLHGRTLGIWSYGRIGQRVAGFGHAFGMQVLVWGGEASCAQAARDGFAVAGSREELFERSDVLSLHRRLTAQTRHDITAQDLARMRDDALLVNTSRAELIAPGALLAALDAGRPAQAALDVFEHEPVLDPRDPLLRHVRVLATPHLGYVERDSYALYFDAAFDNVLAFAAGTPRNLVNPEVLATTQRV
>NZ_CP020998.1|WP_033481284.1|1432435_1432756_-|DUF1820-family-protein
MSKPLYKVTFLNHGKVYELYAREVTGSHLWGFNQIGELVFDVHDGLVVDPTEERLREEFGNTRTLHLPMQSIVRIEEVEKKGQSVIRDATTGDKVVTPFPSPIKPR
>NZ_CP020998.1|WP_003482177.1|1432864_1433557_-|rhomboid-family-intramembrane-serine-protease
MFVSLPSRKKPTPRWAVPLLFATVWLAYLWSISRPGEARNTLWLDWGALSSGVSNLGDWWATLRDGSVLRLFTALFLHADWSHLLGNLVFLLIFGLPAERILGPWRLLLLFLVGGAASNLAAIFAIGTPDRVIIGASGAVSALIGTYLALFPGAKLGVVLPLGVFLEFIRVPAPLLIGAWALLQVVFAYIGPAFGMVAWSAHIAGFVFGIVYGLYVRAAIARRLRKRHGF
>NZ_CP020998.1|WP_007968187.1|1433776_1435117_+|outer-membrane-protein-transport-protein
MSTASTLSRATLLAVGIAGVLAVGQAHGAAFQLKENSAKGLGRAFAGSGSAPDDASIIATNPAGMRQLDGRLFQADVSAISFSAKFQPDTAAYANGAPVSGGNGGDAGMIAPVPALYFHVPFGENDNMHLGTSLTVPFGFKTEYDRDWVGRYHGTKTELQAIDFNVAFSYDVNPYVSFGASVFAERLDIDLANAVDFGSVLAARRVPGFAPGSADGYSRIKGDSTEVGFTLGGLFSIDENTHIGFSYRSQVEHKITDGTADFTVPGSAAAVLSVAAPGTFVDTKGRATVKLPASATASFTHNVNEQWSIMADVTRTAWSKFDQVTVDFASNQPDSVLDFSYRDTTFASIGADYRLSDTVTLRGGLAYDQTPTTAEHRDVRVPDASRKWVSLGMSWRPSAQTEYNFGYTHLFTSDPTSDTRSATGDRLAGSYDVKGDVLAASINYKF
>NZ_CP020998.1|WP_033481283.1|1435381_1436083_+|2OG-Fe(II)-oxygenase
MSQPDFIQITDNAIAHEECVAIVQRMRQSQQLHPGRIGGGVFPDLKHSRDLRISGMAEWAEVENRLQQAVFEGVLTYLRQYPQALISPLMLQVTTADGTRHRLVAEDIVQMSNQALGDLARTCLRPGAINLQWYTADQGGYPYWHCELYPRDANADTLHRHLLWTLYLNDDFAQGETEFLFQQRKARPRTGSLLIAPTAFTHTHRGNRPVGGDKFIATSWILFQSAQALYGGE
>NZ_CP020998.1|WP_022557784.1|1436267_1437395_+|PA0069-family-radical-SAM-protein
MQKNSSPSASAAAERDVRSSRTVIKGRGTTAYVPGRFSVTTAVEIDDGWGALDADGETAFRPKTVVAEEIARSIISRNNSPDIGFSQSVNPYRGCEHGCVYCFARPSHAYLDLSPGLDFETRIFAKPNAAALLRAEIARPSYQCSPIALGINTDAYQPAERRLHISRQCLEVLAQARHPVSFVTKAALIERDIDVLAEMAQHNLVSVYFSVTTLDNRLAAKMEPRAAAPHARLRAMQALHAAGVPVGVLVAPVIPMINDKELERILDAAAAHGARSAGYVLLRLPHELTQLWREWLELHYPDRAKHVMSLIQQMRGGKDYDSRFGKRMVGEGPFAELIAQRFSIAYRRLGFGRLPRLDTTQFRPPRPDTPQLDLF
>NZ_CP020998.1|WP_033481282.1|1437518_1437884_-|DUF1330-domain-containing-protein
MVAFSPDALSAFLDNQDTSAIVMLNLIRFQADGGRERYHRYLRLATPILARFDAHIVFSGDGLPVLTAGQAQAWDAVTLVQYPGRSAFKQMIADAEYQHAFEVGRSAIAEIVLQPFHGITL
>NZ_CP020998.1|WP_022557782.1|1437932_1438658_-|YafY-family-transcriptional-regulator
MSRTTRLFELLGLLRAHRRPVSAAALASELGVSQRSLYRDIDTLRALGAPLEGQAGVGYYLKPGFFLPSLAFSQEELDAVMLGLDWVKQRADPALARCGESALAKILSARKHGDGTGIDVAPPAILTAASPSEAVDHPQTAVLRDAIRRQCKLAIGYVDAQDTPSERIVWPIALVYFDDVRVLAAWCERRSAFRHFRVDRLQVRAVLEARYPQSRQALVKQWRQQDRDWRSLLTVSDTAQG

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Crispr_ID: NZ_CP020998_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP020998_3

4813177-4813328

Orphan

Consensus_repeat	Method
CCGGCGCGCGGCGGCGCGGCTGGGACTGCGCTCGCCTCGGGCTGCTGAGGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP020998_3

>merge|NZ_CP020998|3|4813177-4813328|CRISPRCasFinder
CCGGCGCGCGGCGGCGCGGCTGGGACTGCGCTCGCCTCGGGCTGCTGAGGCGCGGCAAAAGGTGGACGGGTTGGAGGTGCAGTAACCGTTGTTCACCCACCCGGCGCGCGGCGCCGCGGCTGGGACTGCGCTCGCCTCGGGCTGCTGAGGCG

>NZ_CP020998|3|3|4813177-4813328|CRISPRCasFinder
CCGGCGCGCGGCGGCGCGGCTGGGACTGCGCTCGCCTCGGGCTGCTGAGGCG	CGGCAAAAGGTGGACGGGTTGGAGGTGCAGTAACCGTTGTTCACCCAC
CCGGCGCGCGGCGCCGCGGCTGGGACTGCGCTCGCCTCGGGCTGCTGAGGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020998.1\|WP_022559707.1\|4823573_4824704_-\|succinyl-diaminopimelate-desuccinylase	unknown	unknown	gnl\|CDD\|237265
NZ_CP020998.1\|WP_007966645.1\|4824941_4825298_-\|arsenate-reductase	unknown	unknown	gnl\|CDD\|239333
NZ_CP020998.1\|WP_022559701.1\|4810004_4810856_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380379
NZ_CP020998.1\|WP_033481301.1\|4825486_4826689_-\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	unknown	unknown	gnl\|CDD\|236996
NZ_CP020998.1\|WP_033481306.1\|4802505_4804695_+\|glycoside-hydrolase-family-3-protein	unknown	unknown	gnl\|CDD\|224389
NZ_CP020998.1\|WP_033481302.1\|4820465_4821518_+\|right-handed-parallel-beta-helix-repeat-containing-protein	unknown	unknown	gnl\|CDD\|379079
NZ_CP020998.1\|WP_022559706.1\|4821585_4823280_-\|asparagine-synthase-B	unknown	unknown	gnl\|CDD\|236513
NZ_CP020998.1\|WP_022559703.1\|4813490_4814147_+\|thiopurine-S-methyltransferase	unknown	unknown	gnl\|CDD\|183921
NZ_CP020998.1\|WP_014089765.1\|4809441_4809882_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP020998.1\|WP_022559709.1\|4826711_4829321_-\|[protein-PII]-uridylyltransferase	unknown	unknown	gnl\|CDD\|179839
NZ_CP020998.1\|WP_022559700.1\|4807927_4809445_-\|efflux-transporter-outer-membrane-subunit	unknown	unknown	gnl\|CDD\|273830
NZ_CP020998.1\|WP_022559705.1\|4817881_4820020_+\|TonB-dependent-siderophore-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP020998.1\|WP_022559695.1\|4798029_4798638_-\|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl\|CDD\|223777
NZ_CP020998.1\|WP_005911777.1\|4797535_4797724_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020998.1\|WP_022559697.1\|4800558_4802328_+\|M14-family-metallopeptidase	unknown	unknown	gnl\|CDD\|349460
NZ_CP020998.1\|WP_046832215.1\|4806723_4807917_-\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|185090
NZ_CP020998.1\|WP_096035446.1\|4814413_4814950_-\|bacterioferritin	unknown	unknown	gnl\|CDD\|153099
NZ_CP020998.1\|WP_046832214.1\|4815044_4817462_+\|penicillin-acylase-family-protein	unknown	unknown	gnl\|CDD\|376618
NZ_CP020998.1\|WP_007966665.1\|4805136_4806717_-\|DHA2-family-efflux-MFS-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|129794
NZ_CP020998.1\|WP_022559702.1\|4810917_4813161_+\|DNA-topoisomerase-IV-subunit-A	unknown	unknown	gnl\|CDD\|235503

Protein	Function_ID	Function_description	E-value
NZ_CP020998.1\|WP_022559707.1\|4823573_4824704_-\|succinyl-diaminopimelate-desuccinylase	gnl\|CDD\|237265	PRK13009, PRK13009, succinyl-diaminopimelate desuccinylase; Reviewed.	0
NZ_CP020998.1\|WP_007966645.1\|4824941_4825298_-\|arsenate-reductase	gnl\|CDD\|239333	cd03035, ArsC_Yffb, Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.	7.61446e-49
NZ_CP020998.1\|WP_022559701.1\|4810004_4810856_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|380379	cd06124, cupin_NimR-like_N, AraC/XylS family transcriptional regulators similar to NimR, N-terminal cupin domain. This family contains mostly bacterial proteins containing an AraC/XylS family helix-turn-helix (HTH) DNA-binding domain C-terminal to a cupin domain, and may be possible transcriptional regulators. Included in this family is Escherichia coli HTH-type transcriptional regulator NimR (also called YeaM) that negatively regulates expression of the nimT operon and its own expression. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	3.86016e-26
NZ_CP020998.1\|WP_033481301.1\|4825486_4826689_-\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	gnl\|CDD\|236996	PRK11830, dapD, 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional.	4.37952e-179
NZ_CP020998.1\|WP_033481306.1\|4802505_4804695_+\|glycoside-hydrolase-family-3-protein	gnl\|CDD\|224389	COG1472, BglX, Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism].	1.83691e-73
NZ_CP020998.1\|WP_033481302.1\|4820465_4821518_+\|right-handed-parallel-beta-helix-repeat-containing-protein	gnl\|CDD\|379079	pfam13229, Beta_helix, Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.	3.75594e-18
NZ_CP020998.1\|WP_022559706.1\|4821585_4823280_-\|asparagine-synthase-B	gnl\|CDD\|236513	PRK09431, asnB, asparagine synthetase B; Provisional.	0
NZ_CP020998.1\|WP_022559703.1\|4813490_4814147_+\|thiopurine-S-methyltransferase	gnl\|CDD\|183921	PRK13255, PRK13255, thiopurine S-methyltransferase; Reviewed.	1.19368e-128
NZ_CP020998.1\|WP_014089765.1\|4809441_4809882_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	9.78725e-17
NZ_CP020998.1\|WP_022559709.1\|4826711_4829321_-\|[protein-PII]-uridylyltransferase	gnl\|CDD\|179839	PRK04374, PRK04374, [protein-PII] uridylyltransferase.	0
NZ_CP020998.1\|WP_022559700.1\|4807927_4809445_-\|efflux-transporter-outer-membrane-subunit	gnl\|CDD\|273830	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family. Members of this model comprise a subfamily of the Outer Membrane Factor (TCDB 1.B.17) porins. OMF proteins operate in conjunction with a primary transporter of the RND, MFS, ABC, or PET systems, and a MFP (membrane fusion protein) to tranport substrates across membranes. The complex thus formed allows transport (export) of various solutes (heavy metal cations; drugs, oligosaccharides, proteins, etc.) across the two envelopes of the Gram-negative bacterial cell envelope in a single energy-coupled step. Current data suggest that the OMF (and not the MFP) is largely responsible for the formation of both the trans-outer membrane and trans-periplasmic channels. The roles played by the MFP have yet to be determined. [Cellular processes, Detoxification, Transport and binding proteins, Porins].	1.11643e-148
NZ_CP020998.1\|WP_022559705.1\|4817881_4820020_+\|TonB-dependent-siderophore-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	9.0805e-71
NZ_CP020998.1\|WP_022559695.1\|4798029_4798638_-\|rhomboid-family-intramembrane-serine-protease	gnl\|CDD\|223777	COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism].	1.06644e-19
NZ_CP020998.1\|WP_022559697.1\|4800558_4802328_+\|M14-family-metallopeptidase	gnl\|CDD\|349460	cd06241, M14-like, Peptidase M14-like domain; uncharacterized subgroup. Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly different specificities, with Carboxypeptidase A1 (CPA1) preferring aliphatic and small aromatic residues, and CPA2 preferring the bulky aromatic side chains. Enzymes belonging to the N/E subfamily enzymes are not produced as inactive precursors and instead rely on their substrate specificity and subcellular compartmentalization to prevent inappropriate cleavage. They contain an extra C-terminal transthyretin-like domain, thought to be involved in folding or formation of oligomers. MCPs can also be classified based on their involvement in specific physiological processes; the pancreatic MCPs participate only in alimentary digestion and include carboxypeptidase A and B (A/B subfamily), while others, namely regulatory MCPs or the N/E subfamily, are involved in more selective reactions, mainly in non-digestive tissues and fluids, acting on blood coagulation/fibrinolysis, inflammation and local anaphylaxis, pro-hormone and neuropeptide processing, cellular response and others. Another MCP subfamily, is that of succinylglutamate desuccinylase /aspartoacylase, which hydrolyzes N-acetyl-L-aspartate (NAA), and deficiency in which is the established cause of Canavan disease. Another subfamily (referred to as subfamily C) includes an exceptional type of activity in the MCP family, that of dipeptidyl-peptidase activity of gamma-glutamyl-(L)-meso-diaminopimelate peptidase I which is involved in bacterial cell wall metabolism.	4.99188e-87
NZ_CP020998.1\|WP_046832215.1\|4806723_4807917_-\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|185090	PRK15136, PRK15136, multidrug efflux MFS transporter periplasmic adaptor subunit EmrA.	7.32517e-133
NZ_CP020998.1\|WP_096035446.1\|4814413_4814950_-\|bacterioferritin	gnl\|CDD\|153099	cd00907, Bacterioferritin, Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) bestowing ferroxidase activity.	4.21023e-63
NZ_CP020998.1\|WP_046832214.1\|4815044_4817462_+\|penicillin-acylase-family-protein	gnl\|CDD\|376618	pfam01804, Penicil_amidase, Penicillin amidase. Penicillin amidase or penicillin acylase EC:3.5.1.11 catalyzes the hydrolysis of benzylpenicillin to phenylacetic acid and 6-aminopenicillanic acid (6-APA) a key intermediate in the the synthesis of penicillins. Also in the family is cephalosporin acylase and aculeacin A acylase which are involved in the synthesis of related peptide antibiotics.	1.79246e-109
NZ_CP020998.1\|WP_007966665.1\|4805136_4806717_-\|DHA2-family-efflux-MFS-transporter-permease-subunit	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	7.38793e-150
NZ_CP020998.1\|WP_022559702.1\|4810917_4813161_+\|DNA-topoisomerase-IV-subunit-A	gnl\|CDD\|235503	PRK05561, PRK05561, DNA topoisomerase 4 subunit A.	0

>NZ_CP020998.1|WP_022559702.1|4810917_4813161_+|DNA-topoisomerase-IV-subunit-A
MTDLTRPTFHGFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIVYAMSELGLNAAAKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTDDPKSFAAMRYTESKLTPIAEVLLGELGQGTTDWAPNFDGTLEEPTWLPARLPHLLLNGTTGIAVGMATDVPPHNLNEIVSALLRLLDDPDASVADLCEHVLGPDYPTTAEIITPAADLRNIYETGHGSVRARATYKKEHANIVIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDESDHTSPVRVVLVPRSNRVDAEQLMGHLFVTTDLERSYRVNLNVIGLDGRPQVKNLKHLLSEWLSFRSDTVTRRLNHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPVLISRFALSEEQAEYILETKLRQLARLEEMKIRGEQEALAKERAQIIAILESKTKLKKLIKDELTADAKKFGDARRSPLVQRGAAQAIDETEMVASEPMTVVLSQKGWVRAAKGHEVDPAGMSYRDGDGLLAAVRSRSTHQVAFLDSDGRAYSTAVHTLPSARGNGEPLTGRFSPASGAAFQVMASADNATRFVLASSHGYGFVTRFENLTGRNKAGKAMLNLTTGSHVLTPAQVSNPQTDRIVAVTSAGNLLAVPATDVPELDKGKGNKIIEIPKAKLGTERVVAVVAVAPGNTLLVRSGARTMSLSFKDLDTYVGARASRGSLLPRGWQKVDGLEVQ
>NZ_CP020998.1|WP_022559701.1|4810004_4810856_+|helix-turn-helix-transcriptional-regulator
MSIENPPTQIDALPPGVRASFEKADGPVLIAFLAELREVWAPETAWHAHVRGQLMYVEHGVLTVHTEQGALSLPPGCAGWMPPGQQHTVELAGPMRGWGVVVRPDACAALPAQGGVIRLTGLAREAIMRAASWPLDQPLDATRQRLAAVLLDELCQVQIDHLHLPMPADRRLLRIARQLLDTPADPRPLDAWANWGGLSPRSLSRHFRDETGLSFAQWRQQARLTEGLRRLSQGHAVAQVSDQLGYSSPSAFVSVFHRHFGAPPTRYLAGSHARGLASPAASG
>NZ_CP020998.1|WP_014089765.1|4809441_4809882_-|MarR-family-transcriptional-regulator
MNVSSSATPSFGLLLRQVRDALMRQLDAEMKGELPDFGFSHYVGLKILAVRSPCTANELALALDQTPSAVTRLLDKLEALGAVRREPHAQDRRALQIVMTEQGVALWERLRLRGERAIEHGLRDLSAAERELLTSLLIRVRDALNS
>NZ_CP020998.1|WP_022559700.1|4807927_4809445_-|efflux-transporter-outer-membrane-subunit
MNVASSPTPTLRPRSMRLARPFVITALALALAACASSRGLNPQGNVLDPGTLHAERALAQQTTLSPAAWPASDWWRALGDAQLDALIAEGLQHSPSLAAADARLRQAQARIGSAQAERGPSLSVSGGYTGLQLPESMVGEELGGSYGGSAQVVLDFRYGIDLWGGKRSAWEAAVDQAHAAEVDAQAARLNLSSAIAEGYAQLAYAWSLHDLANDELSRAQKTLELTRQRRSAGIDSELQVRQAQARVPAAQQQLQSAQQQIDEARTALAALVGQGPDRGLDIARPVFGAGLATQLPSMLPADLLGRRPDVVAARWRVEAADKDIAVAKTRFYPSLNLTALGGVINPDVGKLLESGSVLGLVAPALSLPIFDGGKLRANLAGSDAQYDLAVANYNQKVISALREVADQVTAVRSLEQRAQAQNDAVQTATAAFDLAQQRYRAGIGSYLDVLSVQEQLLVARQRLAGLQSQQLLASVRLQRALGGGFTPEPARDTAHTAPTSAQPNS
>NZ_CP020998.1|WP_046832215.1|4806723_4807917_-|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit
MSQTTSTSPQPAPAAPSKRRAALRIVAIVVILAIIGLVVWYFLVGRWHEGTDDAYVQGNQVQITPMVGGTVVSIGAEDGMRVERGQLLVQLDPADTEVAVQQAEANLAKTVRQVRGLYRTVEGAQAELSAREVTLRSARSDFARRKDLAATGAISNEELAHARDELAAAEAAVSGSRESLERNRALVDDSAVANQPDVQTAAAQLRQAYLNHARTGVVAPVSGYVARRSAQVGQRVQPGSVLMAVVPLEQVWVEANFKETQLKHMRLGQEVELHSDLYGGGVSYTGRIQSLGLGTGSAFSLLPAQNASGNWIKIVQRVPVRIAVDSEQLASNPLRIGLSMKVEVNLHDQQGSVLPTKVANGAVFATDVYAQQLKAADADIQRIIQDNLPSQAASKAG
>NZ_CP020998.1|WP_007966665.1|4805136_4806717_-|DHA2-family-efflux-MFS-transporter-permease-subunit
MSSQAPTAPGGPAAPAPAAGFRPASVALCTVGLAMASFMQVLDTTIANVSLPTIAGNLGASSQQATWVITSFAVSTAIALPLTGWLSRRFGETKLFVWSTLAFTIASLLCGLAQSMGMLVVARALQGFVAGPMYPITQSLLVSIYPREKRGQALALLAMITVVAPIAGPILGGWITDNYSWEWIFLINVPLGIIASSIVGSQLRHRPEQLEKPRMDYIGLILLVVGVGALQLVLDLGNDEDWFSSDKIVVLACIAAVALVVFVIWELTDKDPIVDLKLFRHRNFRAGTLAMVVAYAAFFSVSLLIPQWLQRDMGYTAIWAGLATAPIGILPVLMTPFVGKYALRFDLRMLATIAFVFMSFTSFFRSNFNLQVDFGHVATIQLVMGVGVALFFMPVLQILLSDLDGREIAAGSGLATFLRTLGGSFAASLTTYLWARRTQVHHAHITEHISVYTPGMQEQVTAMGQGDLQRGAASLNNMINHQASQMGFNDIFYLLGWTFLAIIFFLWLAKPPFGAGAGSAAAAGGH
>NZ_CP020998.1|WP_033481306.1|4802505_4804695_+|glycoside-hydrolase-family-3-protein
MGLGIALAAPLAVAQGAPSSQPWMDTALTSDQRADRLLAQMSEDEKFQMLRSYFGLGTDKIPKPEGALGSAGYVPGIPRLGIPAQQLADAGVGVTNPGGIRKGDYATAMPSGPSTASSWNRQLAYTGGKTMGRESWQQGFNVLLAGSVNLQRDPRNGRNFEYAGEDPLLAGTMVGESIRGVQSEHVLSTMKHFALNDMETRRNFHSAQIGEQAMHESDLLAFEIALKIGDPASVMCSYNKINGVYGCEHDYLLNQVLKQEWKYPGYVMSDWGGVHSGSKAALAGLDQQSAGEVFDAAVYFDAPLRMAVSAGVVPRARLDDMVRRVLRSLFAHGAFDHPTQRQSIDGKAGLLAAQRVAEEGSVLLRNEQAALPLSKDVRRIAVIGGYADKGVMSGGGSSRVDYTINGGNAVPGITPTTWPGPVIIHPSSPLQALRTALPNVQIDYLDGTDRTAAARAAKAADVAIVFATQWAAESVDLPDMRLPDNQDALIETVAKANPKTTVVLETNGPVRMPWAERVPAVLQAWYPGIGGGEAIANLLTGAVNPSGHLPVTWPVDESQLPRPSIPGLGFKPAKPGEDSIDYAIEGANVGYKWFAARKLTPRYPFGHGLSYTQFRMGGLRVDARGSQLTASFEVENTGPREGAAVPQLYVALPDGHATPLRLIGWQKLTLKPGEKRSVQVVAEPKTLADFDAEARRWTIAAGTYRLQLARSASEPVQTAQVTLQAAQLP
>NZ_CP020998.1|WP_022559697.1|4800558_4802328_+|M14-family-metallopeptidase
MPRFTRLALSLLLLTSAPAALAAAPLTTQAERSGFIQTGRYDEVIALCDAFAQRYPQAVRCIQFGTTPEGRPMKALIASTSGALDPQSAAQRKLPVVLVQGGIHAGEIDGKDAGFLALRELLDGKAGHGVLDKLVWVFVPVFNVDGHERFGAWNRPNQRGPEQMGWRTTAQNLNLNRDYVKADAPEMQAVLQLVQQWDPLMYVDLHVTDGAKFEHDVSVQVEPVHAGDTTLQRDGTRWRDAVLADLKKQGSLPLPYYPSFVHEDDPSSGFADDVSPPRFSHGYFLLRNRFGMLVETHSWKDYPTRVRITRNAIVSVLQQAARNGAQWRTDALAADQRATHLAGTSEPLSFAAGPEARTVAFRGYAYTRTSSPISGALMTRYDESKPQVWKVPLRDQIKPDVVVDAPRGGYLVPAAQAALVGGKLRLHGIQFTTIGTAAERPVQTFRADAVKFAARSNESHQTVEVNGQWRDETRNVPAGSLFVPIAQPKARLVMAILEPQAPDSLLQWGFFNTAFERKEYMEAYVAEEVARDMLAKDAALKTQFEQRIASDPDFANNPQARLEFFAKRHASWDERYQLYPVLRTAQTDF
>NZ_CP020998.1|WP_022559695.1|4798029_4798638_-|rhomboid-family-intramembrane-serine-protease
MITLILIAITGIVSWMAFNNRKLSDRLILWPPAVDKHRQYDRLVTYGFIHADLGHLIFNMITLFFFGRVIENVMAQLTGSVLTYPLFYLAALVVSILPSYLKNQKNPNYLSLGASGAVSAVLFAFILLQPWTIILVLFIPAPAILYAVFYVGYSLWMDRRGGDRINHSAHLAGAAFGVMFMLIMEPRVWQVFLEQLSNPRLG
>NZ_CP020998.1|WP_005911777.1|4797535_4797724_+|hypothetical-protein
MNNDSAGHSADSDSSLLEGLFQFALKGDTHNPDFTQLNDTVYERLQQAYGVASSADQERNAA
>NZ_CP020998.1|WP_022559703.1|4813490_4814147_+|thiopurine-S-methyltransferase
MDTNFWLERWQLGHTGFHQQEVLPLLQKHWHALDLPKESRVLVPLCGKTLDMHWLAAQGHRVLGVELSQLAVTQFFDEAGLQPQRHTSAAGEHFIAGPIEIICGDAFALDASVLADCTAVYDRAALVALPADLRLRYLQTVYAQLPTHCRGLLITLEYPQAETAGPPFSVDATHVHALFDAAWQVDQLERRDILDQEPRFRDEGVTGLSTAVYRLQRR
>NZ_CP020998.1|WP_096035446.1|4814413_4814950_-|bacterioferritin
MPGGLGHHARTASLEHTMKGHPEVVDYLKQLLRGELAARDQYFLHSRRYEDQGLMALYERINHEMEEETEHADALLRRILFLEGDPDMRPAQFTPGKTVVEMLERDLVVEYEVRAALAAGMKLCEEHGDYVSRDVLLKQLQDTEEDHAWWLEQQLGLIKRIGLELYQTSKIDKGHIAG
>NZ_CP020998.1|WP_046832214.1|4815044_4817462_+|penicillin-acylase-family-protein
MRQWLGRLLLGIGLLVLAASLGLYLLMRGSLPQLDGDSALSGLAAPVSVQRDRLGVVTIDAANQLDAMRALGYVHAQERYFEMDLMRRAPAGELSELFGAKAVDLDKRNRAHRLRARVQASLDIATGSQRAALQAYTDGVNAGLAALRVRPWPYLLLRQTPRAWTLDDSILTGLAMYADLQDSDNQTELAAARIRAVVPPALAALFDHQGSSWDAPLSGPPQGDASVPDAATLDLRRLPHPPAAPHAETPTPGSNNFAVDGSLTADGRAIVADDMHLGLRAPNIWFRARMRYADSNAPEGKVDVTGFTLPGLPAVVVGSNGHVAWAFTNSYIDTADFARIPAPTPGHPQALTRHVETIRVAGAAPVQFEVREATWGPVLHVNADGSALALRWAAQLPGAIRLDFAQMSTAGDLQAAFAVADRSGIPAQNLLLADRSGRIAWRLIGARPARNAGCGPSGIAELATSTPAPEAASSAPAETAATPSMSGTCLPWSLRSDAAPALIDPPSHRLWTANNRIVDAQQLATLGNAGYDLGARAQQIREDLFAKQRFNERDLLAIQLDDRAVLLTRWWQLLRSVVEHSKDPALQQVAHATRHWDGRASTDSASYRIVREFRSKTIEAVEAGLLAPAKAALGAEFLPPRRAQLEGIVWPLLQQRPAHLLSPAVASWEQLLDDAARRAQSDMIAEDAQSEPRGQHTWGQRNTASICHPIARALPALAKRWLCMPPDQLPGDRDMPRVQGPAFGASERMVVLPGHEQDGIVHMPGGQSGHPLSPFWGAGHDDWVHGRPTPFLPTATRYTLQLRPQ
>NZ_CP020998.1|WP_022559705.1|4817881_4820020_+|TonB-dependent-siderophore-receptor
MRPTLLVTALAAALALHTLPALAQHTTTPAVTELDGVDVIGRAQTLYKSEDAAVATRTDTPLALVPQSVQVLPRELIDDQAARQITDLYRSISGISFFSYAGVTLRGFRQENVLYDGLRGDPYAGFSVPQLFNIERVEVLKGPAGALYGGGEPGGVINYVTRKPGHQAARRIELQLGNQSFGAASFEATGPAREDGRIRYRIGAYADGEDGFRWNTDSQSQIGDASVAFDLGDTGELTLQYTDITQNLGGNRLRGVPVDNDGNFLTDRRWNHNEPTDFLDMRAKVALAQYRFAPSSAWEVDMALRWFKNQEHQIYHEPMGLIDRDRDGTAEWMTRQLRNQYRDNDAISSNVNAVFRTSTAAIEHKLLMGADYYRLDADFRAQTANTADTGRVRGPVPGIDLFNPVYGRSGFYDYGLDALPWRATSTRSQRYGAYLQDELTLAPRWYAMAGVRWDGFKDDNLLDGSRVTGNDLSWRVGSTVVLREGVNAYASYASGFLPQDAANQDSSVGGPFDPERSTQWEIGLKTALNDGGLTLNTALYRIERSNIVQANGSIVAGVNQLSALGLVRSEGLEVDLLADLTERWVLNLTYAYNDARVLDAGTNGITNASGDRFANAPRNTFGLWTRYDLPMWRSAIAFGADYVGERVSLDGQRVKPYAIYDISWQTQWDAWKLQINVKNLFDKVYAVSGFNTRAGHFPGEPRRIYAQLAYSF
>NZ_CP020998.1|WP_033481302.1|4820465_4821518_+|right-handed-parallel-beta-helix-repeat-containing-protein
MPLLARSVSALLPLMFATACSAAAPAKSGPPDAPVAACTAKVRPGQDLQKAIDKLPQSDKPTVLCLEKGEFPLNGLVSIHRGNFTLRGQGPSTIVRMADGVQQPVLVVGDYENQQPTGVIRNVSIEDMQIVASTGDKEFMPERPYLSNSAVVVRSGQGIRLAGLQVNKCRSACLLSEYDTREITIENNDVSGAIWDGVSFNRTAKVTMVNNYIHDNVAAGLTTEHLEDSEIRNNRFERNGSQGIYLSDARRNRFSNNQFDGNKVAGVFLACAIRYRTPEILCWDNSMSQDNIFENNRFANTPFTYTIGVDRAANCTAADFKPNLWRNNQADMAGVDIDPQRYGYCVRHEQ
>NZ_CP020998.1|WP_022559706.1|4821585_4823280_-|asparagine-synthase-B
MCSIFGIFGLQPGDDLQALRRQALECSQRQRHRGPDWSGVYVDTGAILVHERLAIVDPAGGSQPLLSEDGQLALAVNGEIYNHRELKAELLQPYAFQTGSDCEVINALYREDTPASYLNRLNGIFAFALWDKTEGRVIIARDPIGVVPLYWGHDREGRLRVASELKSLVDDCADAAQFPPGHWYDSATGALNRYYERAWRQYGAVEGVQVQLQELREAFERAVHRQLMTDVPYGVLLSGGLDSSLVAAVAARYARHRIEENDTTEAWWPRLHSFAIGLKGSPDLAAAEVAAAALGTVHHGFEYTFDEGLDALPDVIRHIETYDVTTIRASTPMFLLARRIKAMGVKMVLSGEGSDEIFGGYLYFHKAPNAREFHEELVRKLDALNNYDCLRANKSMMAWGVEPRVPFLDREFLDVAMRMDARFKMIDKTSSGATRMEKGVLREAFAGYLPESILWRQKEQFSDGVGYGWIDGLKAHAQAQVSDRELAAADRRYPVNPPQTKEAYFYRSLFEQFFPGQAAAETVPGGKSIACSSPTAIAWDASFAAMADPSGRAIAGVHAQALAS
>NZ_CP020998.1|WP_022559707.1|4823573_4824704_-|succinyl-diaminopimelate-desuccinylase
MSDVLELTCDLIARASVTPMDAGCQAAIAQRLRAAGFSCEHLRLGEVENLWATHGRGAPVLVLLGHTDVVPPGPREAWTSNPFDPQIRDGVLYGRGAADMKGSVAAFVVAAEQFVAAHPSHTGTLAVLLTSDEEGDAIDGVRRVAEVFRERGQTIDWCITGEPSSTERLGDLLRVGRRGSLSGTLTVKGVQGHVAYPHKARNPIHLAAPALAELVARQWDDGFESFPPTSLQLSNIHAGTGANNVIPGELQVAFNLRYTPHWDAPRLEAEITALLDRHALDYALRWHRSGEPFYTPEGRLRSVAREVLGEFAGAPPEESTGGGTSDARFIAPLGAQCIEVGPVNASIHQVDEHVRVADLQALPALYRKLIERLLVG
>NZ_CP020998.1|WP_007966645.1|4824941_4825298_-|arsenate-reductase
MTTLYGLKNCDTCKKATKWLDRFGVAYTFVDYRDHKPEPQTLVGWAEQVGGFDALINKSSTTWRQLPDNRKVAGSAAEWKLLLREYPQLIRRPLVITDDGALHQGFSDNGFKKLFGIG
>NZ_CP020998.1|WP_033481301.1|4825486_4826689_-|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase
MATSKKTAPKQSATTTTNAASKRANAPSGKAAKVPAAADSKPGVGVGKQGAAAGAVGKKTAASDAASPKTVAKKTGAKTATSAAPRVARQPTKVVAAPAAKKAAAAKKLPIAEQAVHSAATQVGSDELKLGIESAFERRATLTMDEIDGSTRAIVTRVVDGLESGQFRVAEPDGQGGWTVNEWLKKAVLLYFRVNEMAVIDAQPAPFWDKVESRFAGFHEAEFRKAGVRVVPGAVARRGSYFGKDVVLMPSFTNIGAYVGEGTMVDTWATVGSCAQIGKHCHLSGGAGIGGVLEPLQASPTIIEDHCFIGARSEVVEGVVIGHHSVIGMGVFIGQSTRIYNRATGEISYGYVPPYSVVVSGQLPSKDGSHSLYCAVIVKQVDAKTRSKTSVNELLRGLAD
>NZ_CP020998.1|WP_022559709.1|4826711_4829321_-|[protein-PII]-uridylyltransferase
MTATPAERPDPGVAGDADWAAQARPLLVHADMRLCKRFDQGEPIERLVALRARAVDQLMRNAWMRCIPADSGLSLHAVGGYGRGELFPRSDVDVLVLGDTAAQQQHEQALARLFALLWDVGLPISHAVRSPAQCTAAAADQTVLTALIESRALVADAHARGALAAAIAPPQVWPPRDFFQAKREELLARHQRFGDTADNLEPDIKDGPSGLRDLQTLGWMALRAFGVKDLEALVGLGHVGFDEAAALRREREELARLRFGLHIVANRPEERLRFDYQKTLAERLGFADDRESLGVEKMMQRFYRSAALIRRISDRLLQRFEEQFDGEATPEPLGGGFSLRRGYLAADPESWPDGDVLQVFALFAQWAAHREVRGLHSLTARALAEVLRDLPAYEVADATARERFMALLRGPRAVETLNRMARLGVLGQWIPAFASVSGRMQFDLFHVYTVDQHTLMVLRNIALFAAGRADERFSIAHEVWPRLRKPELLLLAGLFHDIAKGRGGDHSELGAVDARAFCLAHRLSEGDTELVTWLVEQHLRMSVTAQKQDISDPEVIHRFATLVGTRERLDYLYLLTCADIAGTSPKLWNAWKDRLLADLYFAARRALREGLEHPPPREERLREARESARTLMQAQGHDDVTIDRQFAGMPDENFLRFRPEQLAWQAASLIEVEIGQTLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQETYADGDPQRLAATLRQVLAGDLQKVRPARRAVPRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDEHDRPLSESARQALRDALCACLDPV

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP020998_2	2.9\|1428036\|24\|NZ_CP020998\|CRISPRCasFinder	1428036-1428059	24	NZ_CP017244	Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence	934481-934504	2	0.917
NZ_CP020998_2	2.10\|1428090\|24\|NZ_CP020998\|CRISPRCasFinder	1428090-1428113	24	NZ_CP022775	Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence	841356-841379	2	0.917
NZ_CP020998_2	2.10\|1428090\|24\|NZ_CP020998\|CRISPRCasFinder	1428090-1428113	24	NC_014310	Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence	841102-841125	2	0.917
NZ_CP020998_2	2.10\|1428090\|24\|NZ_CP020998\|CRISPRCasFinder	1428090-1428113	24	NZ_CP022762	Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence	741221-741244	2	0.917
NZ_CP020998_2	2.10\|1428090\|24\|NZ_CP020998\|CRISPRCasFinder	1428090-1428113	24	NZ_CP023017	Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence	811287-811310	2	0.917
NZ_CP020998_2	2.10\|1428090\|24\|NZ_CP020998\|CRISPRCasFinder	1428090-1428113	24	NZ_CP014703	Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence	740336-740359	2	0.917
NZ_CP020998_2	2.10\|1428090\|24\|NZ_CP020998\|CRISPRCasFinder	1428090-1428113	24	NZ_CP022760	Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence	742914-742937	2	0.917
NZ_CP020998_2	2.10\|1428090\|24\|NZ_CP020998\|CRISPRCasFinder	1428090-1428113	24	NZ_CP022789	Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence	742903-742926	2	0.917
NZ_CP020998_2	2.10\|1428090\|24\|NZ_CP020998\|CRISPRCasFinder	1428090-1428113	24	NZ_CP022771	Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence	741208-741231	2	0.917
NZ_CP020998_2	2.10\|1428090\|24\|NZ_CP020998\|CRISPRCasFinder	1428090-1428113	24	NZ_CP022777	Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence	741227-741250	2	0.917
NZ_CP020998_2	2.10\|1428090\|24\|NZ_CP020998\|CRISPRCasFinder	1428090-1428113	24	NZ_CP022799	Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence	741205-741228	2	0.917
NZ_CP020998_2	2.10\|1428090\|24\|NZ_CP020998\|CRISPRCasFinder	1428090-1428113	24	NZ_CP022764	Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence	841425-841448	2	0.917
NZ_CP020998_2	2.10\|1428090\|24\|NZ_CP020998\|CRISPRCasFinder	1428090-1428113	24	NZ_CP022797	Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence	841424-841447	2	0.917
NZ_CP020998_2	2.10\|1428090\|24\|NZ_CP020998\|CRISPRCasFinder	1428090-1428113	24	NZ_CP022758	Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence	841409-841432	2	0.917
NZ_CP020998_2	2.8\|1427979\|27\|NZ_CP020998\|CRISPRCasFinder	1427979-1428005	27	NZ_CP054029	Rhizobium sp. JKLM19E plasmid pPR19E02, complete sequence	463188-463214	3	0.889
NZ_CP020998_2	2.10\|1428090\|24\|NZ_CP020998\|CRISPRCasFinder	1428090-1428113	24	NZ_CP013739	Streptomyces globisporus C-1027 plasmid SGLP1, complete sequence	114529-114552	3	0.875
NZ_CP020998_2	2.7\|1427922\|27\|NZ_CP020998\|CRISPRCasFinder	1427922-1427948	27	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	1614849-1614875	4	0.852
NZ_CP020998_2	2.9\|1428036\|24\|NZ_CP020998\|CRISPRCasFinder	1428036-1428059	24	NC_015059	Granulicella tundricola MP5ACTX9 plasmid pACIX904, complete sequence	14492-14515	4	0.833
NZ_CP020998_2	2.7\|1427922\|27\|NZ_CP020998\|CRISPRCasFinder	1427922-1427948	27	NZ_CP029362	Streptomyces globisporus strain TFH56 plasmid pTFSG1, complete sequence	61592-61618	5	0.815
NZ_CP020998_2	2.7\|1427922\|27\|NZ_CP020998\|CRISPRCasFinder	1427922-1427948	27	NC_016626	Burkholderia sp. YI23 plasmid byi_1p, complete sequence	1778077-1778103	5	0.815
NZ_CP020998_2	2.7\|1427922\|27\|NZ_CP020998\|CRISPRCasFinder	1427922-1427948	27	NZ_AP012556	Mycobacterium avium subsp. hominissuis TH135 plasmid pMAH135, complete sequence	22147-22173	5	0.815
NZ_CP020998_2	2.7\|1427922\|27\|NZ_CP020998\|CRISPRCasFinder	1427922-1427948	27	NC_016588	Azospirillum lipoferum 4B plasmid AZO_p6, complete sequence	72444-72470	5	0.815
NZ_CP020998_2	2.7\|1427922\|27\|NZ_CP020998\|CRISPRCasFinder	1427922-1427948	27	MH271303	Microbacterium phage MementoMori, complete genome	20739-20765	5	0.815
NZ_CP020998_2	2.7\|1427922\|27\|NZ_CP020998\|CRISPRCasFinder	1427922-1427948	27	MN813682	Microbacterium phage Matzah, complete genome	21015-21041	5	0.815
NZ_CP020998_2	2.7\|1427922\|27\|NZ_CP020998\|CRISPRCasFinder	1427922-1427948	27	MK937591	Microbacterium phage Cinna, complete genome	21039-21065	5	0.815
NZ_CP020998_2	2.7\|1427922\|27\|NZ_CP020998\|CRISPRCasFinder	1427922-1427948	27	NZ_CP023152	Mycobacterium chimaera strain FLAC0070 plasmid pFLAC0070_1, complete sequence	116472-116498	5	0.815
NZ_CP020998_2	2.7\|1427922\|27\|NZ_CP020998\|CRISPRCasFinder	1427922-1427948	27	NZ_CP013739	Streptomyces globisporus C-1027 plasmid SGLP1, complete sequence	59488-59514	5	0.815
NZ_CP020998_2	2.7\|1427922\|27\|NZ_CP020998\|CRISPRCasFinder	1427922-1427948	27	MT152150	Pseudomonas phage 8P, complete genome	40493-40519	5	0.815
NZ_CP020998_2	2.7\|1427922\|27\|NZ_CP020998\|CRISPRCasFinder	1427922-1427948	27	NC_019848	Sinorhizobium meliloti GR4 plasmid pRmeGR4c, complete sequence	1178659-1178685	5	0.815
NZ_CP020998_2	2.7\|1427922\|27\|NZ_CP020998\|CRISPRCasFinder	1427922-1427948	27	NZ_CP021798	Sinorhizobium meliloti strain USDA1106 plasmid psymA, complete sequence	399632-399658	5	0.815
NZ_CP020998_2	2.7\|1427922\|27\|NZ_CP020998\|CRISPRCasFinder	1427922-1427948	27	NZ_CP009145	Sinorhizobium meliloti strain RMO17 plasmid pSymA, complete sequence	1241207-1241233	5	0.815
NZ_CP020998_2	2.7\|1427922\|27\|NZ_CP020998\|CRISPRCasFinder	1427922-1427948	27	NZ_CP021801	Sinorhizobium meliloti strain USDA1021 plasmid psymA, complete sequence	1145574-1145600	5	0.815
NZ_CP020998_2	2.7\|1427922\|27\|NZ_CP020998\|CRISPRCasFinder	1427922-1427948	27	NZ_CP021830	Sinorhizobium meliloti strain HM006 plasmid psymA, complete sequence	836227-836253	5	0.815
NZ_CP020998_2	2.7\|1427922\|27\|NZ_CP020998\|CRISPRCasFinder	1427922-1427948	27	NZ_CP021824	Sinorhizobium meliloti strain KH46 plasmid psymA, complete sequence	1245812-1245838	5	0.815
NZ_CP020998_2	2.7\|1427922\|27\|NZ_CP020998\|CRISPRCasFinder	1427922-1427948	27	NZ_CP021813	Sinorhizobium meliloti strain M270 plasmid psymA, complete sequence	149317-149343	5	0.815
NZ_CP020998_2	2.7\|1427922\|27\|NZ_CP020998\|CRISPRCasFinder	1427922-1427948	27	NZ_CP021794	Sinorhizobium meliloti strain USDA1157 plasmid psymA, complete sequence	303664-303690	5	0.815
NZ_CP020998_2	2.7\|1427922\|27\|NZ_CP020998\|CRISPRCasFinder	1427922-1427948	27	NZ_CP021809	Sinorhizobium meliloti strain Rm41 plasmid psymA, complete sequence	66861-66887	5	0.815
NZ_CP020998_2	2.7\|1427922\|27\|NZ_CP020998\|CRISPRCasFinder	1427922-1427948	27	NZ_CP049358	Deinococcus wulumuqiensis R12 plasmid unnamed1, complete sequence	208557-208583	5	0.815
NZ_CP020998_2	2.7\|1427922\|27\|NZ_CP020998\|CRISPRCasFinder	1427922-1427948	27	NZ_CP015095	Pelagibaca abyssi strain JLT2014 plasmid pPABY4, complete sequence	75944-75970	5	0.815
NZ_CP020998_2	2.7\|1427922\|27\|NZ_CP020998\|CRISPRCasFinder	1427922-1427948	27	NC_003037	Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence	321626-321652	5	0.815
NZ_CP020998_2	2.7\|1427922\|27\|NZ_CP020998\|CRISPRCasFinder	1427922-1427948	27	NZ_CP019585	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymA, complete sequence	375217-375243	5	0.815
NZ_CP020998_2	2.7\|1427922\|27\|NZ_CP020998\|CRISPRCasFinder	1427922-1427948	27	NC_017324	Sinorhizobium meliloti BL225C plasmid pSINMEB01, complete sequence	646126-646152	5	0.815
NZ_CP020998_2	2.7\|1427922\|27\|NZ_CP020998\|CRISPRCasFinder	1427922-1427948	27	NZ_CP021827	Sinorhizobium meliloti strain KH35c plasmid psymA, complete sequence	434813-434839	5	0.815
NZ_CP020998_2	2.7\|1427922\|27\|NZ_CP020998\|CRISPRCasFinder	1427922-1427948	27	NC_018683	Sinorhizobium meliloti Rm41 plasmid pSYMA, complete sequence	558560-558586	5	0.815
NZ_CP020998_2	2.7\|1427922\|27\|NZ_CP020998\|CRISPRCasFinder	1427922-1427948	27	NZ_CP021805	Sinorhizobium meliloti strain T073 plasmid psymA, complete sequence	616941-616967	5	0.815
NZ_CP020998_2	2.7\|1427922\|27\|NZ_CP020998\|CRISPRCasFinder	1427922-1427948	27	NZ_CP026526	Sinorhizobium meliloti strain AK21 plasmid pSymA, complete sequence	507884-507910	5	0.815
NZ_CP020998_2	2.7\|1427922\|27\|NZ_CP020998\|CRISPRCasFinder	1427922-1427948	27	NZ_CP019483	Sinorhizobium meliloti strain B401 plasmid pSymA, complete sequence	293668-293694	5	0.815
NZ_CP020998_2	2.7\|1427922\|27\|NZ_CP020998\|CRISPRCasFinder	1427922-1427948	27	NZ_CP031159	Deinococcus wulumuqiensis strain NEB 479 plasmid pDrdA, complete sequence	184933-184959	5	0.815
NZ_CP020998_2	2.7\|1427922\|27\|NZ_CP020998\|CRISPRCasFinder	1427922-1427948	27	NZ_CP019486	Sinorhizobium meliloti strain B399 plasmid pSymA, complete sequence	269636-269662	5	0.815
NZ_CP020998_2	2.7\|1427922\|27\|NZ_CP020998\|CRISPRCasFinder	1427922-1427948	27	NC_020527	Sinorhizobium meliloti 2011 plasmid pSymA, complete sequence	321288-321314	5	0.815
NZ_CP020998_2	2.8\|1427979\|27\|NZ_CP020998\|CRISPRCasFinder	1427979-1428005	27	NZ_CP039905	Agrobacterium tumefaciens strain CFBP6623 plasmid pAtCFBP6623a, complete sequence	51861-51887	5	0.815
NZ_CP020998_2	2.8\|1427979\|27\|NZ_CP020998\|CRISPRCasFinder	1427979-1428005	27	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	367183-367209	5	0.815
NZ_CP020998_2	2.8\|1427979\|27\|NZ_CP020998\|CRISPRCasFinder	1427979-1428005	27	AF440695	Virus PhiCh1, complete genome	58196-58222	5	0.815
NZ_CP020998_2	2.8\|1427979\|27\|NZ_CP020998\|CRISPRCasFinder	1427979-1428005	27	NC_004084	Natrialba phage PhiCh1, complete genome	58196-58222	5	0.815
NZ_CP020998_2	2.8\|1427979\|27\|NZ_CP020998\|CRISPRCasFinder	1427979-1428005	27	NC_011368	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence	657721-657747	5	0.815
NZ_CP020998_2	2.8\|1427979\|27\|NZ_CP020998\|CRISPRCasFinder	1427979-1428005	27	NZ_CP030128	Indioceanicola profundi strain SCSIO 08040 plasmid unnamed2, complete sequence	345670-345696	5	0.815
NZ_CP020998_2	2.7\|1427922\|27\|NZ_CP020998\|CRISPRCasFinder	1427922-1427948	27	NZ_CP005961	Pseudomonas mandelii JR-1 plasmid unnamed, complete sequence	193825-193851	6	0.778
NZ_CP020998_2	2.7\|1427922\|27\|NZ_CP020998\|CRISPRCasFinder	1427922-1427948	27	NZ_CP029356	Azospirillum sp. CFH 70021 plasmid unnamed1	349994-350020	6	0.778
NZ_CP020998_2	2.7\|1427922\|27\|NZ_CP020998\|CRISPRCasFinder	1427922-1427948	27	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	1667668-1667694	6	0.778
NZ_CP020998_2	2.7\|1427922\|27\|NZ_CP020998\|CRISPRCasFinder	1427922-1427948	27	NC_014309	Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome	436000-436026	6	0.778
NZ_CP020998_2	2.7\|1427922\|27\|NZ_CP020998\|CRISPRCasFinder	1427922-1427948	27	NC_021289	Burkholderia insecticola plasmid p1, complete sequence	182702-182728	6	0.778
NZ_CP020998_2	2.7\|1427922\|27\|NZ_CP020998\|CRISPRCasFinder	1427922-1427948	27	NZ_CP021765	Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence	473219-473245	6	0.778
NZ_CP020998_2	2.7\|1427922\|27\|NZ_CP020998\|CRISPRCasFinder	1427922-1427948	27	NZ_CP009572	Sphingomonas taxi strain ATCC 55669 plasmid STP1, complete sequence	81085-81111	6	0.778
NZ_CP020998_2	2.7\|1427922\|27\|NZ_CP020998\|CRISPRCasFinder	1427922-1427948	27	MT553342	Microbacterium phage Kelcole, complete genome	23692-23718	6	0.778
NZ_CP020998_2	2.7\|1427922\|27\|NZ_CP020998\|CRISPRCasFinder	1427922-1427948	27	NC_048068	Microbacterium phage OneinaGillian, complete genome	23339-23365	6	0.778
NZ_CP020998_2	2.8\|1427979\|27\|NZ_CP020998\|CRISPRCasFinder	1427979-1428005	27	NZ_CP026974	Achromobacter insolitus strain FDAARGOS_88 plasmid unnamed1, complete sequence	155076-155102	6	0.778
NZ_CP020998_2	2.8\|1427979\|27\|NZ_CP020998\|CRISPRCasFinder	1427979-1428005	27	NZ_CP031159	Deinococcus wulumuqiensis strain NEB 479 plasmid pDrdA, complete sequence	275912-275938	6	0.778
NZ_CP020998_2	2.7\|1427922\|27\|NZ_CP020998\|CRISPRCasFinder	1427922-1427948	27	NZ_CP033874	Caulobacter sp. FWC26 plasmid p2	4960-4986	7	0.741
NZ_CP020998_2	2.3\|1427973\|39\|NZ_CP020998\|CRT	1427973-1428011	39	NZ_CP054029	Rhizobium sp. JKLM19E plasmid pPR19E02, complete sequence	463182-463220	9	0.769
NZ_CP020998_2	2.12\|1427972\|40\|NZ_CP020998\|PILER-CR	1427972-1428011	40	NZ_CP054029	Rhizobium sp. JKLM19E plasmid pPR19E02, complete sequence	463181-463220	9	0.775

1. spacer 2.9|1428036|24|NZ_CP020998|CRISPRCasFinder matches to NZ_CP017244 (Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence) position: , mismatch: 2, identity: 0.917

ggtacgcgcgttgtcgccgatgcg	CRISPR spacer
ggtgcgcgcgttgtcgccgctgcg	Protospacer
***.*************** ****

2. spacer 2.10|1428090|24|NZ_CP020998|CRISPRCasFinder matches to NZ_CP022775 (Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.917

ggtttgcgcaccggcaccgatctc	CRISPR spacer
ggtttgcgcgccggcaccggtctc	Protospacer
*********.*********.****

3. spacer 2.10|1428090|24|NZ_CP020998|CRISPRCasFinder matches to NC_014310 (Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence) position: , mismatch: 2, identity: 0.917

ggtttgcgcaccggcaccgatctc	CRISPR spacer
ggtttgcgcgccggcaccggtctc	Protospacer
*********.*********.****

4. spacer 2.10|1428090|24|NZ_CP020998|CRISPRCasFinder matches to NZ_CP022762 (Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.917

ggtttgcgcaccggcaccgatctc	CRISPR spacer
ggtttgcgcgccggcaccggtctc	Protospacer
*********.*********.****

5. spacer 2.10|1428090|24|NZ_CP020998|CRISPRCasFinder matches to NZ_CP023017 (Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.917

ggtttgcgcaccggcaccgatctc	CRISPR spacer
ggtttgcgcgccggcaccggtctc	Protospacer
*********.*********.****

6. spacer 2.10|1428090|24|NZ_CP020998|CRISPRCasFinder matches to NZ_CP014703 (Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence) position: , mismatch: 2, identity: 0.917

ggtttgcgcaccggcaccgatctc	CRISPR spacer
ggtttgcgcgccggcaccggtctc	Protospacer
*********.*********.****

7. spacer 2.10|1428090|24|NZ_CP020998|CRISPRCasFinder matches to NZ_CP022760 (Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.917

ggtttgcgcaccggcaccgatctc	CRISPR spacer
ggtttgcgcgccggcaccggtctc	Protospacer
*********.*********.****

8. spacer 2.10|1428090|24|NZ_CP020998|CRISPRCasFinder matches to NZ_CP022789 (Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.917

ggtttgcgcaccggcaccgatctc	CRISPR spacer
ggtttgcgcgccggcaccggtctc	Protospacer
*********.*********.****

9. spacer 2.10|1428090|24|NZ_CP020998|CRISPRCasFinder matches to NZ_CP022771 (Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.917

ggtttgcgcaccggcaccgatctc	CRISPR spacer
ggtttgcgcgccggcaccggtctc	Protospacer
*********.*********.****

10. spacer 2.10|1428090|24|NZ_CP020998|CRISPRCasFinder matches to NZ_CP022777 (Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.917

ggtttgcgcaccggcaccgatctc	CRISPR spacer
ggtttgcgcgccggcaccggtctc	Protospacer
*********.*********.****

11. spacer 2.10|1428090|24|NZ_CP020998|CRISPRCasFinder matches to NZ_CP022799 (Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.917

ggtttgcgcaccggcaccgatctc	CRISPR spacer
ggtttgcgcgccggcaccggtctc	Protospacer
*********.*********.****

12. spacer 2.10|1428090|24|NZ_CP020998|CRISPRCasFinder matches to NZ_CP022764 (Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.917

ggtttgcgcaccggcaccgatctc	CRISPR spacer
ggtttgcgcgccggcaccggtctc	Protospacer
*********.*********.****

13. spacer 2.10|1428090|24|NZ_CP020998|CRISPRCasFinder matches to NZ_CP022797 (Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.917

ggtttgcgcaccggcaccgatctc	CRISPR spacer
ggtttgcgcgccggcaccggtctc	Protospacer
*********.*********.****

14. spacer 2.10|1428090|24|NZ_CP020998|CRISPRCasFinder matches to NZ_CP022758 (Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.917

ggtttgcgcaccggcaccgatctc	CRISPR spacer
ggtttgcgcgccggcaccggtctc	Protospacer
*********.*********.****

15. spacer 2.8|1427979|27|NZ_CP020998|CRISPRCasFinder matches to NZ_CP054029 (Rhizobium sp. JKLM19E plasmid pPR19E02, complete sequence) position: , mismatch: 3, identity: 0.889

ggacacgatcaccttctggcccagcgt	CRISPR spacer
ggacacgatcgccttcaggcccagcga	Protospacer
**********.***** *********

16. spacer 2.10|1428090|24|NZ_CP020998|CRISPRCasFinder matches to NZ_CP013739 (Streptomyces globisporus C-1027 plasmid SGLP1, complete sequence) position: , mismatch: 3, identity: 0.875

ggtttgcgcaccggcaccgatctc	CRISPR spacer
ggtatgcgcaccggcaccgctctg	Protospacer
*** *************** ***

17. spacer 2.7|1427922|27|NZ_CP020998|CRISPRCasFinder matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.852

actgatctggctgccgcgctcggcgag	CRISPR spacer
catgatctggctgccgcgctcgacgaa	Protospacer
  ********************.***.

18. spacer 2.9|1428036|24|NZ_CP020998|CRISPRCasFinder matches to NC_015059 (Granulicella tundricola MP5ACTX9 plasmid pACIX904, complete sequence) position: , mismatch: 4, identity: 0.833

ggtacgcgcgttgtcgccgatgcg	CRISPR spacer
cagaagcgcgttgtcgccgatgcg	Protospacer
 . * *******************

19. spacer 2.7|1427922|27|NZ_CP020998|CRISPRCasFinder matches to NZ_CP029362 (Streptomyces globisporus strain TFH56 plasmid pTFSG1, complete sequence) position: , mismatch: 5, identity: 0.815

actgatctggctgccgcgctcggcgag	CRISPR spacer
cctgatctggctgctgcgctcggtcac	Protospacer
 *************.********. *

20. spacer 2.7|1427922|27|NZ_CP020998|CRISPRCasFinder matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 5, identity: 0.815

actgatctggctgccgcgctcggcgag	CRISPR spacer
agcgatctggctgccgcgctcgccggt	Protospacer
* .******************* **.

21. spacer 2.7|1427922|27|NZ_CP020998|CRISPRCasFinder matches to NZ_AP012556 (Mycobacterium avium subsp. hominissuis TH135 plasmid pMAH135, complete sequence) position: , mismatch: 5, identity: 0.815

actgatctggctgccgcgctcggcgag	CRISPR spacer
gctgatcgggctgctgcgctcggcggc	Protospacer
.****** ******.**********.

22. spacer 2.7|1427922|27|NZ_CP020998|CRISPRCasFinder matches to NC_016588 (Azospirillum lipoferum 4B plasmid AZO_p6, complete sequence) position: , mismatch: 5, identity: 0.815

actgatctggctgccgcgctcggcgag	CRISPR spacer
gaggatctggccgccgcgctcgccgag	Protospacer
.  ********.********** ****

23. spacer 2.7|1427922|27|NZ_CP020998|CRISPRCasFinder matches to MH271303 (Microbacterium phage MementoMori, complete genome) position: , mismatch: 5, identity: 0.815

actgatctggctgccgcgctcggcgag	CRISPR spacer
gaggatcgggatgccgcgctcggcgag	Protospacer
.  **** ** ****************

24. spacer 2.7|1427922|27|NZ_CP020998|CRISPRCasFinder matches to MN813682 (Microbacterium phage Matzah, complete genome) position: , mismatch: 5, identity: 0.815

actgatctggctgccgcgctcggcgag	CRISPR spacer
gaggatcgggatgccgcgctcggcgag	Protospacer
.  **** ** ****************

25. spacer 2.7|1427922|27|NZ_CP020998|CRISPRCasFinder matches to MK937591 (Microbacterium phage Cinna, complete genome) position: , mismatch: 5, identity: 0.815

actgatctggctgccgcgctcggcgag	CRISPR spacer
gaggatcgggatgccgcgctcggcgag	Protospacer
.  **** ** ****************

26. spacer 2.7|1427922|27|NZ_CP020998|CRISPRCasFinder matches to NZ_CP023152 (Mycobacterium chimaera strain FLAC0070 plasmid pFLAC0070_1, complete sequence) position: , mismatch: 5, identity: 0.815

actgatctggctgccgcgctcggcgag	CRISPR spacer
gctgatcgggctgctgcgctcggcggc	Protospacer
.****** ******.**********.

27. spacer 2.7|1427922|27|NZ_CP020998|CRISPRCasFinder matches to NZ_CP013739 (Streptomyces globisporus C-1027 plasmid SGLP1, complete sequence) position: , mismatch: 5, identity: 0.815

actgatctggctgccgcgctcggcgag	CRISPR spacer
cctgatctggctgctgcgctcggtcac	Protospacer
 *************.********. *

28. spacer 2.7|1427922|27|NZ_CP020998|CRISPRCasFinder matches to MT152150 (Pseudomonas phage 8P, complete genome) position: , mismatch: 5, identity: 0.815

actgatctggctgccgcgctcggcgag	CRISPR spacer
gctgatctggctgccgcgctcaaggac	Protospacer
.********************.. **

29. spacer 2.7|1427922|27|NZ_CP020998|CRISPRCasFinder matches to NC_019848 (Sinorhizobium meliloti GR4 plasmid pRmeGR4c, complete sequence) position: , mismatch: 5, identity: 0.815

actgatctggctgccgcgctcggcgag	CRISPR spacer
ctttatccggctgccgcgcccggcgag	Protospacer
 .* ***.***********.*******

30. spacer 2.7|1427922|27|NZ_CP020998|CRISPRCasFinder matches to NZ_CP021798 (Sinorhizobium meliloti strain USDA1106 plasmid psymA, complete sequence) position: , mismatch: 5, identity: 0.815

actgatctggctgccgcgctcggcgag	CRISPR spacer
ctttatccggctgccgcgcccggcgag	Protospacer
 .* ***.***********.*******

31. spacer 2.7|1427922|27|NZ_CP020998|CRISPRCasFinder matches to NZ_CP009145 (Sinorhizobium meliloti strain RMO17 plasmid pSymA, complete sequence) position: , mismatch: 5, identity: 0.815

actgatctggctgccgcgctcggcgag	CRISPR spacer
ctttatccggctgccgcgcccggcgag	Protospacer
 .* ***.***********.*******

32. spacer 2.7|1427922|27|NZ_CP020998|CRISPRCasFinder matches to NZ_CP021801 (Sinorhizobium meliloti strain USDA1021 plasmid psymA, complete sequence) position: , mismatch: 5, identity: 0.815

actgatctggctgccgcgctcggcgag	CRISPR spacer
ctttatccggctgccgcgcccggcgag	Protospacer
 .* ***.***********.*******

33. spacer 2.7|1427922|27|NZ_CP020998|CRISPRCasFinder matches to NZ_CP021830 (Sinorhizobium meliloti strain HM006 plasmid psymA, complete sequence) position: , mismatch: 5, identity: 0.815

actgatctggctgccgcgctcggcgag	CRISPR spacer
ctttatccggctgccgcgcccggcgag	Protospacer
 .* ***.***********.*******

34. spacer 2.7|1427922|27|NZ_CP020998|CRISPRCasFinder matches to NZ_CP021824 (Sinorhizobium meliloti strain KH46 plasmid psymA, complete sequence) position: , mismatch: 5, identity: 0.815

actgatctggctgccgcgctcggcgag	CRISPR spacer
ctttatccggctgccgcgcccggcgag	Protospacer
 .* ***.***********.*******

35. spacer 2.7|1427922|27|NZ_CP020998|CRISPRCasFinder matches to NZ_CP021813 (Sinorhizobium meliloti strain M270 plasmid psymA, complete sequence) position: , mismatch: 5, identity: 0.815

actgatctggctgccgcgctcggcgag	CRISPR spacer
ctttatccggctgccgcgcccggcgag	Protospacer
 .* ***.***********.*******

36. spacer 2.7|1427922|27|NZ_CP020998|CRISPRCasFinder matches to NZ_CP021794 (Sinorhizobium meliloti strain USDA1157 plasmid psymA, complete sequence) position: , mismatch: 5, identity: 0.815

actgatctggctgccgcgctcggcgag	CRISPR spacer
ctttatccggctgccgcgcccggcgag	Protospacer
 .* ***.***********.*******

37. spacer 2.7|1427922|27|NZ_CP020998|CRISPRCasFinder matches to NZ_CP021809 (Sinorhizobium meliloti strain Rm41 plasmid psymA, complete sequence) position: , mismatch: 5, identity: 0.815

actgatctggctgccgcgctcggcgag	CRISPR spacer
ctttatccggctgccgcgcccggcgag	Protospacer
 .* ***.***********.*******

38. spacer 2.7|1427922|27|NZ_CP020998|CRISPRCasFinder matches to NZ_CP049358 (Deinococcus wulumuqiensis R12 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.815

actgatctggctgccgcgctcggcgag	CRISPR spacer
gctgacctgactgccgcgctcggcatg	Protospacer
.****.***.**************. *

39. spacer 2.7|1427922|27|NZ_CP020998|CRISPRCasFinder matches to NZ_CP015095 (Pelagibaca abyssi strain JLT2014 plasmid pPABY4, complete sequence) position: , mismatch: 5, identity: 0.815

actgatctggctgccgcgctcggcgag	CRISPR spacer
gctgctctgcctgccgcgctcggccaa	Protospacer
.*** **** ************** *.

40. spacer 2.7|1427922|27|NZ_CP020998|CRISPRCasFinder matches to NC_003037 (Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence) position: , mismatch: 5, identity: 0.815

actgatctggctgccgcgctcggcgag	CRISPR spacer
ctttatccggctgccgcgcccggcgag	Protospacer
 .* ***.***********.*******

41. spacer 2.7|1427922|27|NZ_CP020998|CRISPRCasFinder matches to NZ_CP019585 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymA, complete sequence) position: , mismatch: 5, identity: 0.815

actgatctggctgccgcgctcggcgag	CRISPR spacer
ctttatccggctgccgcgcccggcgag	Protospacer
 .* ***.***********.*******

42. spacer 2.7|1427922|27|NZ_CP020998|CRISPRCasFinder matches to NC_017324 (Sinorhizobium meliloti BL225C plasmid pSINMEB01, complete sequence) position: , mismatch: 5, identity: 0.815

actgatctggctgccgcgctcggcgag	CRISPR spacer
ctttatccggctgccgcgcccggcgag	Protospacer
 .* ***.***********.*******

43. spacer 2.7|1427922|27|NZ_CP020998|CRISPRCasFinder matches to NZ_CP021827 (Sinorhizobium meliloti strain KH35c plasmid psymA, complete sequence) position: , mismatch: 5, identity: 0.815

actgatctggctgccgcgctcggcgag	CRISPR spacer
ctttatccggctgccgcgcccggcgag	Protospacer
 .* ***.***********.*******

44. spacer 2.7|1427922|27|NZ_CP020998|CRISPRCasFinder matches to NC_018683 (Sinorhizobium meliloti Rm41 plasmid pSYMA, complete sequence) position: , mismatch: 5, identity: 0.815

actgatctggctgccgcgctcggcgag	CRISPR spacer
ctttatccggctgccgcgcccggcgag	Protospacer
 .* ***.***********.*******

45. spacer 2.7|1427922|27|NZ_CP020998|CRISPRCasFinder matches to NZ_CP021805 (Sinorhizobium meliloti strain T073 plasmid psymA, complete sequence) position: , mismatch: 5, identity: 0.815

actgatctggctgccgcgctcggcgag	CRISPR spacer
ctttatccggctgccgcgcccggcgag	Protospacer
 .* ***.***********.*******

46. spacer 2.7|1427922|27|NZ_CP020998|CRISPRCasFinder matches to NZ_CP026526 (Sinorhizobium meliloti strain AK21 plasmid pSymA, complete sequence) position: , mismatch: 5, identity: 0.815

actgatctggctgccgcgctcggcgag	CRISPR spacer
ctttatccggctgccgcgcccggcgag	Protospacer
 .* ***.***********.*******

47. spacer 2.7|1427922|27|NZ_CP020998|CRISPRCasFinder matches to NZ_CP019483 (Sinorhizobium meliloti strain B401 plasmid pSymA, complete sequence) position: , mismatch: 5, identity: 0.815

actgatctggctgccgcgctcggcgag	CRISPR spacer
ctttatccggctgccgcgcccggcgag	Protospacer
 .* ***.***********.*******

48. spacer 2.7|1427922|27|NZ_CP020998|CRISPRCasFinder matches to NZ_CP031159 (Deinococcus wulumuqiensis strain NEB 479 plasmid pDrdA, complete sequence) position: , mismatch: 5, identity: 0.815

actgatctggctgccgcgctcggcgag	CRISPR spacer
gctgacctgactgccgcgctcggcatg	Protospacer
.****.***.**************. *

49. spacer 2.7|1427922|27|NZ_CP020998|CRISPRCasFinder matches to NZ_CP019486 (Sinorhizobium meliloti strain B399 plasmid pSymA, complete sequence) position: , mismatch: 5, identity: 0.815

actgatctggctgccgcgctcggcgag	CRISPR spacer
ctttatccggctgccgcgcccggcgag	Protospacer
 .* ***.***********.*******

50. spacer 2.7|1427922|27|NZ_CP020998|CRISPRCasFinder matches to NC_020527 (Sinorhizobium meliloti 2011 plasmid pSymA, complete sequence) position: , mismatch: 5, identity: 0.815

actgatctggctgccgcgctcggcgag	CRISPR spacer
ctttatccggctgccgcgcccggcgag	Protospacer
 .* ***.***********.*******

51. spacer 2.8|1427979|27|NZ_CP020998|CRISPRCasFinder matches to NZ_CP039905 (Agrobacterium tumefaciens strain CFBP6623 plasmid pAtCFBP6623a, complete sequence) position: , mismatch: 5, identity: 0.815

ggacacgatcaccttctggcccagcgt	CRISPR spacer
gcacacgatcaccttctggcccgccaa	Protospacer
* ********************. *.

52. spacer 2.8|1427979|27|NZ_CP020998|CRISPRCasFinder matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.815

ggacacgatcaccttctggcccagcgt	CRISPR spacer
ggacacgaccaccttctggcccgcttt	Protospacer
********.*************. . *

53. spacer 2.8|1427979|27|NZ_CP020998|CRISPRCasFinder matches to AF440695 (Virus PhiCh1, complete genome) position: , mismatch: 5, identity: 0.815

ggacacgatcaccttctggcccagcgt	CRISPR spacer
cgacacgatcaccgtctgccccagctg	Protospacer
 ************ **** ******

54. spacer 2.8|1427979|27|NZ_CP020998|CRISPRCasFinder matches to NC_004084 (Natrialba phage PhiCh1, complete genome) position: , mismatch: 5, identity: 0.815

ggacacgatcaccttctggcccagcgt	CRISPR spacer
cgacacgatcaccgtctgccccagctg	Protospacer
 ************ **** ******

55. spacer 2.8|1427979|27|NZ_CP020998|CRISPRCasFinder matches to NC_011368 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence) position: , mismatch: 5, identity: 0.815

ggacacgatcaccttctggcccagcgt	CRISPR spacer
ggacacgatcaatttctggcccatcca	Protospacer
*********** .********** *

56. spacer 2.8|1427979|27|NZ_CP020998|CRISPRCasFinder matches to NZ_CP030128 (Indioceanicola profundi strain SCSIO 08040 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.815

ggacacgatcaccttctggcccagcgt	CRISPR spacer
ggacacggtcaccttctggccgcgcaa	Protospacer
*******.*************  **.

57. spacer 2.7|1427922|27|NZ_CP020998|CRISPRCasFinder matches to NZ_CP005961 (Pseudomonas mandelii JR-1 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.778

actgatctggctgccgcgctcggcgag	CRISPR spacer
actggtctggctgccgcgcccggtctt	Protospacer
****.**************.***.

58. spacer 2.7|1427922|27|NZ_CP020998|CRISPRCasFinder matches to NZ_CP029356 (Azospirillum sp. CFH 70021 plasmid unnamed1) position: , mismatch: 6, identity: 0.778

actgatctggctgccgcgctcggcgag	CRISPR spacer
catcacctggctgccgcgctcggcgtc	Protospacer
  * *.*******************

59. spacer 2.7|1427922|27|NZ_CP020998|CRISPRCasFinder matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.778

actgatctggctgccgcgctcggcgag	CRISPR spacer
gttgagctggcggccgcgctcggcgtc	Protospacer
..*** ***** *************

60. spacer 2.7|1427922|27|NZ_CP020998|CRISPRCasFinder matches to NC_014309 (Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome) position: , mismatch: 6, identity: 0.778

actgatctggctgccgcgctcggcgag	CRISPR spacer
gcccagttggctgccgcgctcggcgat	Protospacer
.*. * .*******************

61. spacer 2.7|1427922|27|NZ_CP020998|CRISPRCasFinder matches to NC_021289 (Burkholderia insecticola plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.778

actgatctggctgccgcgctcggcgag	CRISPR spacer
cgcgatctcgatgccgcgctcggcgac	Protospacer
  .***** * ***************

62. spacer 2.7|1427922|27|NZ_CP020998|CRISPRCasFinder matches to NZ_CP021765 (Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.778

actgatctggctgccgcgctcggcgag	CRISPR spacer
gcccagttggctgccgcgctcggcgat	Protospacer
.*. * .*******************

63. spacer 2.7|1427922|27|NZ_CP020998|CRISPRCasFinder matches to NZ_CP009572 (Sphingomonas taxi strain ATCC 55669 plasmid STP1, complete sequence) position: , mismatch: 6, identity: 0.778

actgatctggctgccgcgctcggcgag	CRISPR spacer
cttgaactggccgccgcgctcggcggt	Protospacer
 .*** *****.*************.

64. spacer 2.7|1427922|27|NZ_CP020998|CRISPRCasFinder matches to MT553342 (Microbacterium phage Kelcole, complete genome) position: , mismatch: 6, identity: 0.778

actgatctggctgccgcgctcggcgag	CRISPR spacer
ctcgccctggctgacgcgctcggcgag	Protospacer
 ..* .******* *************

65. spacer 2.7|1427922|27|NZ_CP020998|CRISPRCasFinder matches to NC_048068 (Microbacterium phage OneinaGillian, complete genome) position: , mismatch: 6, identity: 0.778

actgatctggctgccgcgctcggcgag	CRISPR spacer
ctcgccctggctgacgcgctcggcgag	Protospacer
 ..* .******* *************

66. spacer 2.8|1427979|27|NZ_CP020998|CRISPRCasFinder matches to NZ_CP026974 (Achromobacter insolitus strain FDAARGOS_88 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.778

ggacacgatcaccttctggcccagcgt	CRISPR spacer
ttccacgatcactttctggcccagctg	Protospacer
   *********.************

67. spacer 2.8|1427979|27|NZ_CP020998|CRISPRCasFinder matches to NZ_CP031159 (Deinococcus wulumuqiensis strain NEB 479 plasmid pDrdA, complete sequence) position: , mismatch: 6, identity: 0.778

ggacacgatcaccttctggcccagcgt	CRISPR spacer
aacgacgaccacctgctggcccagcgt	Protospacer
..  ****.***** ************

68. spacer 2.7|1427922|27|NZ_CP020998|CRISPRCasFinder matches to NZ_CP033874 (Caulobacter sp. FWC26 plasmid p2) position: , mismatch: 7, identity: 0.741

actgatctggctgccgcgctcggcgag	CRISPR spacer
ttcgatctggctgacgcgctcggccgc	Protospacer
 ..********** ********** .

69. spacer 2.3|1427973|39|NZ_CP020998|CRT matches to NZ_CP054029 (Rhizobium sp. JKLM19E plasmid pPR19E02, complete sequence) position: , mismatch: 9, identity: 0.769

cccgccggacacgatcaccttctggcccagcgtgatcga	CRISPR spacer
cgggccggacacgatcgccttcaggcccagcgagcgctg	Protospacer
*  *************.***** ********* *  * .

70. spacer 2.12|1427972|40|NZ_CP020998|PILER-CR matches to NZ_CP054029 (Rhizobium sp. JKLM19E plasmid pPR19E02, complete sequence) position: , mismatch: 9, identity: 0.775

gcccgccggacacgatcaccttctggcccagcgtgatcga	CRISPR spacer
gcgggccggacacgatcgccttcaggcccagcgagcgctg	Protospacer
**  *************.***** ********* *  * .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

134112 : 209560

uncultured_virus(18.18%)

transposase,protease,integrase

attL 134077:134136|attR 208441:209770

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
134077:134136	attL	NA	NA	NA	NA
WP_011345585.1\|134112_135339_-\|transposase	IS256-like element ISXax1 family transposase	A0A218MNI5	uncultured_virus	2.2e-52	50.3
WP_022559916.1\|136011_136542_-	hypothetical protein	NA	NA	NA	NA
WP_080720930.1\|136669_137053_-	hypothetical protein	NA	NA	NA	NA
WP_057668590.1\|138106_138325_+	hypothetical protein	NA	NA	NA	NA
WP_080720927.1\|138366_139413_-	hypothetical protein	NA	NA	NA	NA
WP_022559919.1\|139778_140369_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_007962497.1\|140439_141153_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_123766547.1\|141406_141619_+	hypothetical protein	NA	NA	NA	NA
WP_005913957.1\|144914_146207_-	adenylosuccinate synthase	A0A2R8FF47	Brazilian_cedratvirus	5.8e-75	38.4
WP_022559922.1\|146769_147234_-	hypothetical protein	NA	NA	NA	NA
WP_007962453.1\|147456_148320_-\|protease	protease modulator HflC	NA	NA	NA	NA
WP_007972198.1\|148319_149447_-\|protease	FtsH protease activity modulator HflK	NA	NA	NA	NA
WP_005996155.1\|150145_150532_-	response regulator	W8CYM9	Bacillus_phage	5.6e-10	31.8
WP_003483926.1\|151028_151928_-	DnaJ domain-containing protein	A0A2L0UZR4	Agrobacterium_phage	7.0e-19	28.0
WP_022559923.1\|152339_152816_-	Hsp20/alpha crystallin family protein	NA	NA	NA	NA
WP_003483924.1\|152978_153461_+	peroxiredoxin	A0A1D8KSL1	Synechococcus_phage	7.0e-26	38.3
WP_003483923.1\|153503_154064_+	bacterioferritin	NA	NA	NA	NA
WP_033481616.1\|154411_156832_-	penicillin-binding protein 1C	NA	NA	NA	NA
WP_007962234.1\|157236_158184_-	glycerophosphodiester phosphodiesterase family protein	A0A0S2MYI4	Enterococcus_phage	3.8e-07	36.0
WP_046832323.1\|158331_161319_-	TonB-dependent receptor	NA	NA	NA	NA
WP_033481614.1\|161541_166464_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA
WP_046121148.1\|167167_168166_-	nucleoside hydrolase	NA	NA	NA	NA
WP_022558483.1\|168243_170460_-	TonB-dependent receptor	NA	NA	NA	NA
WP_046832322.1\|170674_171874_-	2-methylaconitate cis-trans isomerase PrpF	NA	NA	NA	NA
WP_022558481.1\|171987_172545_-	hypothetical protein	NA	NA	NA	NA
WP_033481539.1\|172554_175149_-	Fe/S-dependent 2-methylisocitrate dehydratase AcnD	NA	NA	NA	NA
WP_022558479.1\|175327_176482_-	2-methylcitrate synthase	NA	NA	NA	NA
WP_007970235.1\|176557_177454_-	methylisocitrate lyase	NA	NA	NA	NA
WP_033481538.1\|177598_179200_+	propionate catabolism operon regulatory protein PrpR	NA	NA	NA	NA
WP_039732060.1\|179432_179759_-	hypothetical protein	NA	NA	NA	NA
WP_046832321.1\|180389_180743_-	pilus assembly protein PilZ	NA	NA	NA	NA
WP_022558476.1\|180739_181699_-	DNA polymerase III subunit delta'	NA	NA	NA	NA
WP_033481536.1\|181695_182769_-	endolytic transglycosylase MltG	NA	NA	NA	NA
WP_022558474.1\|182829_184185_-	aminodeoxychorismate synthase component I	NA	NA	NA	NA
WP_046832320.1\|184350_185586_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA
WP_002814322.1\|185727_185967_-	acyl carrier protein	B2ZXV3	Ralstonia_phage	5.9e-10	44.6
WP_007969008.1\|186171_186915_-	3-oxoacyl-ACP reductase FabG	Q06VL0	Trichoplusia_ni_ascovirus	9.9e-11	28.5
WP_022558472.1\|186997_187942_-	ACP S-malonyltransferase	NA	NA	NA	NA
WP_007969006.1\|188220_188661_-	MEKHLA domain-containing protein	NA	NA	NA	NA
WP_007969005.1\|188902_189880_-	ketoacyl-ACP synthase III	NA	NA	NA	NA
WP_010368401.1\|189970_190165_-	50S ribosomal protein L32	NA	NA	NA	NA
WP_007969004.1\|190263_190773_-	hypothetical protein	NA	NA	NA	NA
WP_033481534.1\|190884_191460_+	septum formation inhibitor Maf	NA	NA	NA	NA
WP_022558470.1\|191748_193581_-	hypothetical protein	NA	NA	NA	NA
WP_046121147.1\|193580_194576_-	glycosyltransferase	NA	NA	NA	NA
WP_022558468.1\|194584_196426_-	hypothetical protein	NA	NA	NA	NA
WP_022558467.1\|196463_197417_+	MoxR family ATPase	NA	NA	NA	NA
WP_007968996.1\|197422_198379_+	DUF58 domain-containing protein	NA	NA	NA	NA
WP_046832319.1\|198371_200324_+	DUF3488 domain-containing transglutaminase family protein	NA	NA	NA	NA
WP_007968994.1\|200320_200854_+	Slp family lipoprotein	NA	NA	NA	NA
WP_007968993.1\|200973_201324_-	histidine triad nucleotide-binding protein	NA	NA	NA	NA
WP_003483843.1\|201417_202011_-	recombination protein RecR	NA	NA	NA	NA
WP_005913896.1\|202109_202430_-	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA
WP_007968992.1\|202436_204506_-	DNA polymerase III subunit gamma/tau	E7DN81	Pneumococcus_phage	1.8e-46	41.0
WP_039731388.1\|204821_206354_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_022558464.1\|206390_206678_+	hypothetical protein	NA	NA	NA	NA
WP_046832318.1\|206677_207148_+	hypothetical protein	NA	NA	NA	NA
WP_011345585.1\|207237_208464_+\|transposase	IS256-like element ISXax1 family transposase	A0A218MNI5	uncultured_virus	2.2e-52	50.3
WP_022557821.1\|208576_209560_-\|transposase	IS5-like element ISXfu1 family transposase	A0A077K814	Ralstonia_phage	8.2e-98	59.9
208441:209770	attR	NA	NA	NA	NA

DBSCAN-SWA_2

703381 : 820387

Ralstonia_phage(26.32%)

transposase,protease,bacteriocin,integrase

attL 796180:796202|attR 825607:825629

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_022558205.1\|703381_704749_-\|protease	ATP-dependent protease ATPase subunit HslU	A0A2H5BJT2	Erwinia_phage	1.5e-41	29.1
WP_003482763.1\|704849_705401_-\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_022558204.1\|705597_706515_-	tyrosine recombinase XerC	S5M872	Bacillus_phage	1.3e-12	26.8
WP_080720608.1\|706695_707376_-	DUF484 family protein	NA	NA	NA	NA
WP_022558203.1\|707363_708218_-	diaminopimelate epimerase	NA	NA	NA	NA
WP_022558202.1\|708207_708462_-	hypothetical protein	NA	NA	NA	NA
WP_003482768.1\|708518_708917_-	YbaN family protein	NA	NA	NA	NA
WP_022558201.1\|709279_711415_-	S9 family peptidase	F2Y2Z7	Organic_Lake_phycodnavirus	3.9e-28	25.4
WP_039731563.1\|711524_712709_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_007973684.1\|713099_715193_-	S9 family peptidase	NA	NA	NA	NA
WP_022558199.1\|715260_715572_-	hypothetical protein	NA	NA	NA	NA
WP_003482775.1\|715950_716520_+	lipocalin family protein	NA	NA	NA	NA
WP_005916857.1\|716629_717595_-	YafY family transcriptional regulator	NA	NA	NA	NA
WP_005916853.1\|718143_718944_+	DUF481 domain-containing protein	NA	NA	NA	NA
WP_022558197.1\|719269_720184_-	hydroxymethylbilane synthase	NA	NA	NA	NA
WP_022558196.1\|720214_720952_-	response regulator transcription factor	NA	NA	NA	NA
WP_007965004.1\|720982_722035_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	1.1e-18	33.5
WP_022558195.1\|722039_722708_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_022558194.1\|722868_724806_-	glucans biosynthesis glucosyltransferase MdoH	NA	NA	NA	NA
WP_127459433.1\|725433_725682_+	hypothetical protein	NA	NA	NA	NA
WP_022558192.1\|725872_727522_-	M28 family peptidase	NA	NA	NA	NA
WP_022558191.1\|729144_730632_-	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	8.3e-126	56.9
WP_022558190.1\|730844_732269_+	cellulase family glycosylhydrolase	G0YQI7	Erwinia_phage	2.1e-54	33.6
WP_022558189.1\|732520_734725_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	3.5e-11	65.7
WP_046832181.1\|735458_738200_-	PAS domain S-box protein	G3MA91	Bacillus_virus	2.1e-10	29.2
WP_022558187.1\|738303_741183_+	insulinase family protein	NA	NA	NA	NA
WP_003489747.1\|741744_742674_+	GAF domain-containing protein	NA	NA	NA	NA
WP_080720618.1\|743172_744162_-	hypothetical protein	NA	NA	NA	NA
WP_046832182.1\|744657_745410_-	endonuclease	NA	NA	NA	NA
WP_022558184.1\|746558_748232_+	alpha,alpha-trehalase TreA	NA	NA	NA	NA
WP_022558183.1\|748577_749270_+	AIM24 family protein	NA	NA	NA	NA
WP_033480917.1\|749584_750487_-	magnesium transporter CorA family protein	NA	NA	NA	NA
WP_080720610.1\|750870_751737_+	type III secretion system effector protein	NA	NA	NA	NA
WP_022558181.1\|751823_753200_-	D-serine/D-alanine/glycine transporter	NA	NA	NA	NA
WP_022558180.1\|753618_753834_-	hypothetical protein	NA	NA	NA	NA
WP_022558179.1\|754135_754915_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_099770902.1\|755015_755900_-	DMT family transporter	NA	NA	NA	NA
WP_033480919.1\|756088_756973_+	hypothetical protein	NA	NA	NA	NA
WP_039731881.1\|757178_757742_+	hypothetical protein	NA	NA	NA	NA
WP_033480931.1\|757969_758164_-	hypothetical protein	NA	NA	NA	NA
WP_022558175.1\|758510_760385_-	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	6.3e-14	31.5
WP_022558174.1\|760890_761982_+	DUF1615 domain-containing protein	NA	NA	NA	NA
WP_039732148.1\|762338_764666_+	S9 family peptidase	NA	NA	NA	NA
WP_022558171.1\|765066_765402_-	DUF3817 domain-containing protein	NA	NA	NA	NA
WP_080720613.1\|767534_768002_+	DUF4126 domain-containing protein	NA	NA	NA	NA
WP_033480932.1\|768115_768511_-	VOC family protein	NA	NA	NA	NA
WP_022558168.1\|768582_769557_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_033480933.1\|769694_770474_-	SPFH domain-containing protein	A0A2D2W2L0	Stenotrophomonas_phage	3.1e-92	68.1
WP_022558167.1\|770830_772417_+	SDR family oxidoreductase	M1NLX1	Moumouvirus	5.0e-36	27.8
WP_022558166.1\|772505_772817_-	hypothetical protein	NA	NA	NA	NA
WP_033480920.1\|773063_774008_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_022558164.1\|774057_774792_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_131701248.1\|775290_775689_-	hypothetical protein	NA	NA	NA	NA
WP_011345585.1\|776348_777575_-\|transposase	IS256-like element ISXax1 family transposase	A0A218MNI5	uncultured_virus	2.2e-52	50.3
WP_022557821.1\|778786_779770_+\|transposase	IS5-like element ISXfu1 family transposase	A0A077K814	Ralstonia_phage	8.2e-98	59.9
WP_007975311.1\|779950_780931_+\|transposase	IS5-like element ISXfu2 family transposase	A0A077K814	Ralstonia_phage	1.1e-97	59.5
WP_080720994.1\|781720_782110_+	hypothetical protein	NA	NA	NA	NA
WP_080954884.1\|785398_785596_+	hypothetical protein	NA	NA	NA	NA
WP_108722730.1\|785994_786885_-\|bacteriocin	lipid II-degrading bacteriocin	NA	NA	NA	NA
WP_007975311.1\|787268_788249_+\|transposase	IS5-like element ISXfu2 family transposase	A0A077K814	Ralstonia_phage	1.1e-97	59.5
WP_080954825.1\|788469_789168_+\|transposase	transposase	NA	NA	NA	NA
WP_011345585.1\|789726_790953_+\|transposase	IS256-like element ISXax1 family transposase	A0A218MNI5	uncultured_virus	2.2e-52	50.3
WP_096035781.1\|791458_791656_+	hypothetical protein	NA	NA	NA	NA
WP_131701257.1\|791688_792570_-	hypothetical protein	NA	NA	NA	NA
WP_131701258.1\|792886_793171_-	hypothetical protein	NA	NA	NA	NA
WP_046832553.1\|793228_795916_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA
796180:796202	attL	NA	NA	NA	NA
WP_022558155.1\|796328_797330_-	arabinogalactan endo-1,4-beta-galactosidase	NA	NA	NA	NA
WP_007975311.1\|797489_798470_-\|transposase	IS5-like element ISXfu2 family transposase	A0A077K814	Ralstonia_phage	1.1e-97	59.5
WP_022558154.1\|798906_800229_-	DUF2974 domain-containing protein	NA	NA	NA	NA
WP_099770900.1\|800225_800885_-	hypothetical protein	NA	NA	NA	NA
WP_046832545.1\|801008_803069_+	SpoIIE family protein phosphatase	NA	NA	NA	NA
WP_022558151.1\|803065_803497_+	ATP-binding protein	NA	NA	NA	NA
WP_022558150.1\|803493_803913_+	STAS domain-containing protein	NA	NA	NA	NA
WP_108702724.1\|803919_804114_+	hypothetical protein	NA	NA	NA	NA
WP_046832542.1\|804307_804931_+	HAD hydrolase-like protein	NA	NA	NA	NA
WP_003483271.1\|805080_805800_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_046832541.1\|806880_807222_+	hypothetical protein	NA	NA	NA	NA
WP_017166112.1\|807287_807569_+	hypothetical protein	NA	NA	NA	NA
WP_052756704.1\|807552_807945_+	transcriptional regulator	NA	NA	NA	NA
WP_046832539.1\|808017_809613_-	MobA/MobL family protein	NA	NA	NA	NA
WP_046832538.1\|809879_810206_+	hypothetical protein	NA	NA	NA	NA
WP_080954886.1\|810388_810739_+	hypothetical protein	NA	NA	NA	NA
WP_046832537.1\|810732_811293_+	hypothetical protein	NA	NA	NA	NA
WP_011345585.1\|811802_813029_-\|transposase	IS256-like element ISXax1 family transposase	A0A218MNI5	uncultured_virus	2.2e-52	50.3
WP_046832568.1\|813175_814366_-	hypothetical protein	NA	NA	NA	NA
WP_087942778.1\|814394_814685_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_046832569.1\|814828_815581_+	hypothetical protein	NA	NA	NA	NA
WP_046832570.1\|815622_815937_+	hypothetical protein	NA	NA	NA	NA
WP_131705302.1\|816403_817249_+	hypothetical protein	NA	NA	NA	NA
WP_007975311.1\|817352_818333_-\|transposase	IS5-like element ISXfu2 family transposase	A0A077K814	Ralstonia_phage	1.1e-97	59.5
WP_046832202.1\|818824_820387_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
825607:825629	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1323542 : 1406219

Ralstonia_phage(40.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011345585.1\|1323542_1324769_-\|transposase	IS256-like element ISXax1 family transposase	A0A218MNI5	uncultured_virus	2.2e-52	50.3
WP_046832567.1\|1325978_1328609_+	AAA family ATPase	NA	NA	NA	NA
WP_099800727.1\|1329003_1329357_+	type I addiction module toxin, SymE family	NA	NA	NA	NA
WP_007975311.1\|1330844_1331825_+\|transposase	IS5-like element ISXfu2 family transposase	A0A077K814	Ralstonia_phage	1.1e-97	59.5
WP_022557847.1\|1332544_1332865_-	hypothetical protein	NA	NA	NA	NA
WP_022557821.1\|1333423_1334407_+\|transposase	IS5-like element ISXfu1 family transposase	A0A077K814	Ralstonia_phage	8.2e-98	59.9
WP_046832499.1\|1334917_1335775_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_022557845.1\|1335782_1336277_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_157768215.1\|1336782_1336932_-	hypothetical protein	NA	NA	NA	NA
WP_022557844.1\|1337144_1340261_+	DUF3416 domain-containing protein	NA	NA	NA	NA
WP_022557843.1\|1340257_1343608_+	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA
WP_039730948.1\|1343619_1345803_+	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA
WP_022557841.1\|1345990_1346485_+	metallophosphoesterase family protein	NA	NA	NA	NA
WP_022557840.1\|1346552_1347701_+	aldo/keto reductase	NA	NA	NA	NA
WP_022557839.1\|1347745_1349368_-	carboxylesterase/lipase family protein	M1PNU1	Moumouvirus	8.7e-20	32.5
WP_022557838.1\|1349364_1350444_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_007968138.1\|1350583_1351405_+	2-keto-4-pentenoate hydratase	NA	NA	NA	NA
WP_046832498.1\|1351442_1352441_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA
WP_080720865.1\|1352559_1352973_+	TRAP transporter small permease subunit	NA	NA	NA	NA
WP_005912129.1\|1352972_1354256_+	TRAP transporter large permease	NA	NA	NA	NA
WP_022557836.1\|1354451_1356035_+	family 43 glycosylhydrolase	NA	NA	NA	NA
WP_080720861.1\|1356171_1357239_+	LacI family transcriptional regulator	NA	NA	NA	NA
WP_007968129.1\|1358209_1359064_+	5-dehydro-4-deoxy-D-glucuronate isomerase	NA	NA	NA	NA
WP_007968128.1\|1359252_1360008_+	2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD	NA	NA	NA	NA
WP_003490465.1\|1360171_1360828_+	RpiB/LacA/LacB family sugar-phosphate isomerase	NA	NA	NA	NA
WP_022557834.1\|1361376_1362489_+	cupin domain-containing protein	NA	NA	NA	NA
WP_007968126.1\|1362718_1363363_-	DUF4375 domain-containing protein	NA	NA	NA	NA
WP_007968125.1\|1363503_1364394_-	phenylalanine 4-monooxygenase	NA	NA	NA	NA
WP_033481374.1\|1364521_1365004_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_022557832.1\|1365295_1367494_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_033481373.1\|1367900_1368938_-	patatin-like phospholipase family protein	NA	NA	NA	NA
WP_046832290.1\|1369364_1370372_-	TIGR00266 family protein	NA	NA	NA	NA
WP_007974777.1\|1370568_1371414_-	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	4.1e-05	32.5
WP_022557830.1\|1371560_1372766_+	fatty acid desaturase	NA	NA	NA	NA
WP_033481377.1\|1372803_1373151_+	calcium-dependent protein kinase 21	NA	NA	NA	NA
WP_022557828.1\|1373199_1373937_+	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	5.2e-20	31.6
WP_022557827.1\|1373933_1375406_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_007968110.1\|1375667_1376849_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA
WP_022557826.1\|1376914_1378204_+	ergothioneine biosynthesis protein EgtB	NA	NA	NA	NA
WP_022557825.1\|1378200_1379187_+	L-histidine N(alpha)-methyltransferase	NA	NA	NA	NA
WP_033481376.1\|1379202_1379472_+	DUF3253 domain-containing protein	NA	NA	NA	NA
WP_033481371.1\|1379569_1383277_-	indolepyruvate ferredoxin oxidoreductase family protein	NA	NA	NA	NA
WP_022557822.1\|1383472_1384108_+	hypothetical protein	NA	NA	NA	NA
WP_022557821.1\|1384667_1385651_-\|transposase	IS5-like element ISXfu1 family transposase	A0A077K814	Ralstonia_phage	8.2e-98	59.9
WP_099770656.1\|1386658_1387078_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_007975311.1\|1387510_1388491_-\|transposase	IS5-like element ISXfu2 family transposase	A0A077K814	Ralstonia_phage	1.1e-97	59.5
WP_022557812.1\|1389452_1389752_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_005912560.1\|1389739_1389997_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_022557811.1\|1390062_1390719_-	hemolysin-III family membrane protein	NA	NA	NA	NA
WP_080954881.1\|1390989_1393398_+	DEAD/DEAH box helicase	A0A1B1IUF6	uncultured_Mediterranean_phage	8.7e-08	35.1
WP_046735535.1\|1393394_1394894_+	ribonuclease H-like domain-containing protein	NA	NA	NA	NA
WP_080954880.1\|1395381_1397526_-	avirulence protein	NA	NA	NA	NA
WP_039732216.1\|1397714_1398872_-	ROK family protein	NA	NA	NA	NA
WP_040092152.1\|1399043_1401632_+	TonB-dependent receptor	NA	NA	NA	NA
WP_007964877.1\|1401643_1402429_+	DUF1868 domain-containing protein	NA	NA	NA	NA
WP_022557804.1\|1402568_1403699_-	saccharopine dehydrogenase	NA	NA	NA	NA
WP_033481287.1\|1403782_1404292_-	hypothetical protein	NA	NA	NA	NA
WP_011345585.1\|1404992_1406219_-\|transposase	IS256-like element ISXax1 family transposase	A0A218MNI5	uncultured_virus	2.2e-52	50.3

DBSCAN-SWA_4

1432864 : 1496478

Synechococcus_phage(12.5%)

tail,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003482177.1\|1432864_1433557_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_007968187.1\|1433776_1435117_+	outer membrane protein transport protein	NA	NA	NA	NA
WP_033481283.1\|1435381_1436083_+	2OG-Fe(II) oxygenase	E3SK61	Synechococcus_phage	1.0e-17	47.2
WP_022557784.1\|1436267_1437395_+	PA0069 family radical SAM protein	NA	NA	NA	NA
WP_033481282.1\|1437518_1437884_-	DUF1330 domain-containing protein	NA	NA	NA	NA
WP_022557782.1\|1437932_1438658_-	YafY family transcriptional regulator	NA	NA	NA	NA
WP_022557781.1\|1438958_1440419_+	cardiolipin synthase	NA	NA	NA	NA
WP_005912451.1\|1440493_1440763_+	hypothetical protein	NA	NA	NA	NA
WP_007968197.1\|1440770_1441538_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
WP_022557780.1\|1441790_1442198_-	biopolymer transporter ExbD	NA	NA	NA	NA
WP_005912449.1\|1442700_1443114_-	biopolymer transporter ExbD	NA	NA	NA	NA
WP_005912447.1\|1443117_1443540_-	biopolymer transporter ExbD	NA	NA	NA	NA
WP_005912445.1\|1443586_1444348_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA
WP_033836101.1\|1444434_1445100_-	energy transducer TonB	NA	NA	NA	NA
WP_022557779.1\|1445253_1446447_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_022557778.1\|1446724_1447531_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_022557777.1\|1447715_1448552_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_022557776.1\|1448619_1451064_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	G3M9Z3	Bacillus_virus	1.6e-113	34.7
WP_022557775.1\|1451178_1452285_-	DNA replication/repair protein RecF	NA	NA	NA	NA
WP_005912436.1\|1453318_1454419_-	DNA polymerase III subunit beta	A0A0A8IL17	Aurantimonas_phage	1.1e-53	37.1
WP_022557774.1\|1454695_1456024_-	chromosomal replication initiator protein DnaA	NA	NA	NA	NA
WP_002805908.1\|1456266_1456407_+	50S ribosomal protein L34	NA	NA	NA	NA
WP_007968218.1\|1456445_1456883_+	ribonuclease P protein component	NA	NA	NA	NA
WP_022560505.1\|1456908_1458633_+	membrane protein insertase YidC	NA	NA	NA	NA
WP_022560504.1\|1460210_1461551_+\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA	NA	NA	NA
WP_022560503.1\|1461712_1462570_-	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_022560502.1\|1462761_1465062_+	TonB-dependent receptor	NA	NA	NA	NA
WP_033481512.1\|1465207_1466302_+	glycerophosphodiester phosphodiesterase	NA	NA	NA	NA
WP_033481510.1\|1466421_1467207_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_005912402.1\|1467545_1468502_-	TerC family protein	K4F9T9	Cronobacter_phage	1.3e-31	31.4
WP_007968235.1\|1468766_1469933_+	class I SAM-dependent rRNA methyltransferase	NA	NA	NA	NA
WP_022560498.1\|1470051_1470372_+	hypothetical protein	NA	NA	NA	NA
WP_022560497.1\|1470659_1471916_+	dipeptidase precursor	NA	NA	NA	NA
WP_039731767.1\|1472395_1473706_+	MFS transporter	NA	NA	NA	NA
WP_022560495.1\|1473731_1474901_+	glycerate kinase	W6LM47	Streptococcus_phage	4.0e-43	39.0
WP_022560494.1\|1478304_1478694_+	DUF2628 domain-containing protein	NA	NA	NA	NA
WP_022560493.1\|1479533_1482008_+	glycoside hydrolase family 92 protein	NA	NA	NA	NA
WP_007968252.1\|1483888_1484269_-	hypothetical protein	NA	NA	NA	NA
WP_007968253.1\|1484407_1485028_-	glutathione S-transferase	NA	NA	NA	NA
WP_033481426.1\|1485191_1485422_-	hypothetical protein	NA	NA	NA	NA
WP_033481419.1\|1485981_1487562_+	DNA recombination protein RmuC	NA	NA	NA	NA
WP_033481428.1\|1487781_1488162_+	hypothetical protein	NA	NA	NA	NA
WP_022560469.1\|1488315_1488861_+	glutathione peroxidase	Q70H87	Fowlpox_virus	2.0e-16	33.9
WP_022560468.1\|1488864_1489245_+	hypothetical protein	NA	NA	NA	NA
WP_022560467.1\|1489376_1490432_-	VacJ family lipoprotein	NA	NA	NA	NA
WP_022560466.1\|1490442_1490733_-	STAS domain-containing protein	NA	NA	NA	NA
WP_022560465.1\|1490722_1491385_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_022560464.1\|1491381_1491927_-	outer membrane lipid asymmetry maintenance protein MlaD	NA	NA	NA	NA
WP_003482308.1\|1491938_1492688_-	ABC transporter permease	NA	NA	NA	NA
WP_022560463.1\|1492687_1493482_-	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	4.9e-08	27.2
WP_011257259.1\|1493865_1494153_+	hypothetical protein	NA	NA	NA	NA
WP_007968266.1\|1494171_1494729_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_007968268.1\|1494733_1495270_-\|tail	phage tail protein	NA	NA	NA	NA
WP_007968270.1\|1495330_1495858_-\|tail	phage tail protein	A0A0U4JYA4	Arthrobacter_phage	1.0e-09	28.0
WP_007968272.1\|1495926_1496478_-\|tail	phage tail protein	NA	NA	NA	NA

DBSCAN-SWA_5

2368860 : 2380629

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005913435.1\|2368860_2369817_-	glycosyltransferase family 2 protein	A0A192Y8W7	Salmonella_phage	1.8e-25	27.1
WP_022559978.1\|2370696_2371641_-	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_022559977.1\|2371640_2372387_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA
WP_005913448.1\|2372606_2373662_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.4e-82	47.1
WP_022559976.1\|2373713_2374601_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.5e-93	57.5
WP_016851441.1\|2374597_2375155_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	6.6e-44	48.9
WP_007962671.1\|2375151_2376051_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	4.1e-27	36.2
WP_022559975.1\|2376391_2377558_+	nucleotide sugar dehydrogenase	M1HZB2	Paramecium_bursaria_Chlorella_virus	2.5e-117	58.6
WP_022559974.1\|2377832_2379236_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	1.1e-47	30.0
WP_046832516.1\|2379282_2380629_-	phosphomannomutase/phosphoglucomutase	A0A127AWJ1	Bacillus_phage	7.5e-33	27.1

DBSCAN-SWA_6

2704898 : 2761503

Ralstonia_phage(33.33%)

transposase,tRNA,integrase

attL 2708020:2708035|attR 2761278:2761293

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_099800733.1\|2704898_2705879_-\|transposase	IS5-like element ISXfu2 family transposase	A0A077K814	Ralstonia_phage	7.0e-97	59.2
WP_022558611.1\|2705941_2706667_-	phosphoadenylyl-sulfate reductase	NA	NA	NA	NA
WP_080720847.1\|2706663_2708385_-	assimilatory sulfite reductase (NADPH) hemoprotein subunit	NA	NA	NA	NA
2708020:2708035	attL	NA	NA	NA	NA
WP_046832452.1\|2708493_2710341_-	assimilatory sulfite reductase (NADPH) flavoprotein subunit	NA	NA	NA	NA
WP_022558614.1\|2710520_2711429_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA
WP_022558615.1\|2711428_2713405_+	sulfate adenylyltransferase subunit CysN	A0A1V0SGC3	Hokovirus	1.8e-27	28.9
WP_007964558.1\|2713666_2714737_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_022558616.1\|2714733_2717859_+	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	1.7e-75	23.0
WP_039731414.1\|2718205_2720881_+	M1 family metallopeptidase	A0A0P0IY26	Acinetobacter_phage	1.3e-238	47.8
WP_033481350.1\|2720948_2721518_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_007964587.1\|2721808_2722726_+	RNA methyltransferase	NA	NA	NA	NA
WP_022558619.1\|2722725_2724231_+	carboxylesterase family protein	A0A0M4JT58	Mollivirus	1.4e-27	32.3
WP_039731415.1\|2724368_2726333_-	glycoside hydrolase family 97 protein	NA	NA	NA	NA
WP_046832451.1\|2726550_2730018_+	glycoside hydrolase family 2	NA	NA	NA	NA
WP_022558622.1\|2730154_2733091_+	TonB-dependent receptor	NA	NA	NA	NA
WP_007964576.1\|2733460_2734513_-	LacI family transcriptional regulator	NA	NA	NA	NA
WP_039731417.1\|2734777_2736196_-	M28 family peptidase	NA	NA	NA	NA
WP_022558624.1\|2736319_2736751_-	large-conductance mechanosensitive channel protein MscL	NA	NA	NA	NA
WP_007964570.1\|2736811_2737525_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_005914539.1\|2737988_2738264_-	hypothetical protein	NA	NA	NA	NA
WP_007964568.1\|2738524_2738866_+	Rieske (2Fe-2S) protein	NA	NA	NA	NA
WP_046832450.1\|2738924_2740787_-	SLC13 family permease	NA	NA	NA	NA
WP_022558626.1\|2740864_2741623_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_007964565.1\|2741845_2742640_-	thiazole synthase	NA	NA	NA	NA
WP_022558627.1\|2742689_2742890_-	sulfur carrier protein ThiS	NA	NA	NA	NA
WP_033481344.1\|2743078_2744863_+	autotransporter domain-containing esterase	NA	NA	NA	NA
WP_046832449.1\|2745122_2746688_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_080954871.1\|2747159_2748056_+	Abi family protein	NA	NA	NA	NA
WP_080951691.1\|2748611_2748971_-	hypothetical protein	NA	NA	NA	NA
WP_042826915.1\|2748988_2749303_-	hypothetical protein	NA	NA	NA	NA
WP_042826916.1\|2749352_2750114_-	hypothetical protein	NA	NA	NA	NA
WP_096035440.1\|2750213_2750591_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_046832448.1\|2750699_2751209_+	hypothetical protein	NA	NA	NA	NA
WP_046832447.1\|2751211_2751667_+	hypothetical protein	NA	NA	NA	NA
WP_046832446.1\|2751846_2753625_+	AAA family ATPase	NA	NA	NA	NA
WP_052756699.1\|2753621_2754380_+	hypothetical protein	NA	NA	NA	NA
WP_157859482.1\|2754696_2755170_-	hypothetical protein	NA	NA	NA	NA
WP_011345585.1\|2755225_2756452_-\|transposase	IS256-like element ISXax1 family transposase	A0A218MNI5	uncultured_virus	2.2e-52	50.3
WP_007975311.1\|2757561_2758542_-\|transposase	IS5-like element ISXfu2 family transposase	A0A077K814	Ralstonia_phage	1.1e-97	59.5
WP_011345585.1\|2758917_2760144_+\|transposase	IS256-like element ISXax1 family transposase	A0A218MNI5	uncultured_virus	2.2e-52	50.3
WP_022557821.1\|2760519_2761503_+\|transposase	IS5-like element ISXfu1 family transposase	A0A077K814	Ralstonia_phage	8.2e-98	59.9
2761278:2761293	attR	NA	NA	NA	NA

DBSCAN-SWA_7

3895006 : 3955555

Xanthomonas_phage(60.71%)

coat,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011345585.1\|3895006_3896233_-\|transposase	IS256-like element ISXax1 family transposase	A0A218MNI5	uncultured_virus	2.2e-52	50.3
WP_046832083.1\|3896515_3897388_+	hypothetical protein	NA	NA	NA	NA
WP_011345585.1\|3897368_3898595_+\|transposase	IS256-like element ISXax1 family transposase	A0A218MNI5	uncultured_virus	2.2e-52	50.3
WP_046832424.1\|3898662_3899475_+	DUF2326 domain-containing protein	NA	NA	NA	NA
WP_007964425.1\|3900714_3902007_+	nucleotide sugar dehydrogenase	NA	NA	NA	NA
WP_033481026.1\|3901963_3903256_-	TIGR03862 family flavoprotein	NA	NA	NA	NA
WP_033481025.1\|3903266_3903698_-	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_007964431.1\|3903757_3904123_+	hypothetical protein	NA	NA	NA	NA
WP_022559186.1\|3904224_3904971_+	sulfurtransferase	NA	NA	NA	NA
WP_003489223.1\|3905210_3905858_+	response regulator	NA	NA	NA	NA
WP_033481023.1\|3906383_3910034_-	Rne/Rng family ribonuclease	NA	NA	NA	NA
WP_022559188.1\|3910443_3911430_+	RluA family pseudouridine synthase	NA	NA	NA	NA
WP_022559189.1\|3911462_3913274_-	DUF3300 domain-containing protein	NA	NA	NA	NA
WP_007964444.1\|3913567_3914386_-	zinc transporter ZupT	NA	NA	NA	NA
WP_022559190.1\|3914651_3915074_-	energy transducer TonB	NA	NA	NA	NA
WP_003489213.1\|3915070_3915427_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA
WP_007964449.1\|3915515_3916115_+	NfuA family Fe-S biogenesis protein	NA	NA	NA	NA
WP_033481022.1\|3916128_3917949_+	hypothetical protein	NA	NA	NA	NA
WP_033481040.1\|3918908_3919325_-	hypothetical protein	NA	NA	NA	NA
WP_022559192.1\|3919655_3920135_+	BLUF domain-containing protein	NA	NA	NA	NA
WP_022559193.1\|3920392_3920992_+	O-methyltransferase	A0A2P1JQT7	Mycobacterium_phage	1.8e-07	38.3
WP_033481020.1\|3921858_3922377_+	dehydrogenase	NA	NA	NA	NA
WP_033481019.1\|3922364_3923123_+	PIG-L family deacetylase	NA	NA	NA	NA
WP_022559196.1\|3923119_3923722_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_022559197.1\|3923718_3924387_+	glycosyltransferase	NA	NA	NA	NA
WP_046832423.1\|3924648_3926013_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_022559199.1\|3926009_3927536_+	GMC family oxidoreductase	NA	NA	NA	NA
WP_011345585.1\|3928274_3929501_+\|transposase	IS256-like element ISXax1 family transposase	A0A218MNI5	uncultured_virus	2.2e-52	50.3
WP_046832511.1\|3929794_3930214_-	hypothetical protein	NA	NA	NA	NA
WP_157859476.1\|3930518_3930695_+	hypothetical protein	NA	NA	NA	NA
WP_157859477.1\|3930687_3930831_+	hypothetical protein	NA	NA	NA	NA
WP_080949315.1\|3930823_3931861_+	inovirus-type Gp2 protein	A0A1D6ZIT9	Xanthomonas_phage	1.8e-183	89.0
WP_046735804.1\|3931857_3932154_+	DNA-binding protein	A0A1W6DXU2	Xanthomonas_phage	3.7e-46	92.9
WP_046735805.1\|3932392_3932632_+	hypothetical protein	NA	NA	NA	NA
WP_157859478.1\|3932785_3934195_+	hypothetical protein	A0A1D6ZIU5	Xanthomonas_phage	8.9e-53	41.8
WP_033483148.1\|3934196_3934517_+	DUF2523 domain-containing protein	NA	NA	NA	NA
WP_046735807.1\|3934513_3935698_+	zonular occludens toxin family protein	A0A1W6DXR3	Xanthomonas_phage	4.2e-56	37.8
WP_046735808.1\|3935694_3936369_+	conjugal transfer protein	A0A1W6DY89	Xanthomonas_phage	1.1e-66	57.7
WP_046832561.1\|3936405_3936732_-	hypothetical protein	S0F2N2	Stenotrophomonas_phage	1.2e-16	40.9
WP_046832560.1\|3936914_3937253_+	phage-like protein	Q38057	Xanthomonas_phage	7.3e-46	77.7
WP_046832559.1\|3937289_3937682_-	DUF4124 domain-containing protein	A0A077JCA3	Xanthomonas_phage	7.2e-37	60.0
WP_011345585.1\|3938191_3939418_-\|transposase	IS256-like element ISXax1 family transposase	A0A218MNI5	uncultured_virus	2.2e-52	50.3
WP_099800737.1\|3939711_3940896_-	zonular occludens toxin family protein	A0A1W6DXR3	Xanthomonas_phage	4.2e-56	37.8
WP_033483148.1\|3940892_3941213_-	DUF2523 domain-containing protein	NA	NA	NA	NA
WP_157859478.1\|3941214_3942624_-	hypothetical protein	A0A1D6ZIU5	Xanthomonas_phage	8.9e-53	41.8
WP_046735805.1\|3942777_3943017_-	hypothetical protein	NA	NA	NA	NA
WP_046735804.1\|3943255_3943552_-	DNA-binding protein	A0A1W6DXU2	Xanthomonas_phage	3.7e-46	92.9
WP_080949315.1\|3943548_3944586_-	inovirus-type Gp2 protein	A0A1D6ZIT9	Xanthomonas_phage	1.8e-183	89.0
WP_157859477.1\|3944578_3944722_-	hypothetical protein	NA	NA	NA	NA
WP_157859476.1\|3944714_3944891_-	hypothetical protein	NA	NA	NA	NA
WP_046832546.1\|3945199_3945586_+	DUF3693 domain-containing protein	A0A077JCZ5	Xanthomonas_phage	1.2e-36	68.9
WP_033481018.1\|3945655_3945994_+	phage-like protein	Q38057	Xanthomonas_phage	8.3e-42	74.1
WP_022559202.1\|3946060_3946372_+	hypothetical protein	A0A1W6DXV7	Xanthomonas_phage	1.0e-49	92.2
WP_046832547.1\|3946391_3947714_-	filamentous phage phiLf protein I	Q4LAU4	Stenotrophomonas_phage	9.0e-132	56.2
WP_022559204.1\|3947715_3948036_-	hypothetical protein	Q4LAU3	Stenotrophomonas_phage	3.5e-21	44.2
WP_080954888.1\|3948046_3949099_-	attachment protein	Q9XJ91	Xanthomonas_phage	2.1e-46	65.5
WP_005918131.1\|3949195_3949324_-\|coat	Phi-Lf prophage-derived major coat protein	NA	NA	NA	NA
WP_005918133.1\|3949355_3949472_-\|coat	Phi-Lf prophage-derived minor coat protein	NA	NA	NA	NA
WP_080720657.1\|3949417_3949579_-\|coat	coat protein	NA	NA	NA	NA
WP_022559206.1\|3949610_3949907_-	DNA-binding protein	B1NI78	Stenotrophomonas_phage	1.9e-26	66.3
WP_022559207.1\|3949903_3951013_-	phage-related protein	S0F3I3	Stenotrophomonas_phage	1.0e-160	75.0
WP_022559208.1\|3951005_3951188_-	hypothetical protein	NA	NA	NA	NA
WP_022559209.1\|3951184_3951409_-	hypothetical protein	A0A1D6ZIV2	Xanthomonas_phage	2.1e-17	78.5
WP_046735744.1\|3951536_3951965_+	hypothetical protein	A0A077JCZ5	Xanthomonas_phage	1.3e-52	76.8
WP_046735753.1\|3952404_3953187_-	thioesterase	NA	NA	NA	NA
WP_040964744.1\|3953214_3953445_-	MbtH family NRPS accessory protein	NA	NA	NA	NA
WP_046832548.1\|3953602_3954826_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_040964746.1\|3954850_3955555_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.3e-36	38.8

DBSCAN-SWA_8

4396900 : 4453545

Ralstonia_phage(26.67%)

transposase,tRNA,integrase

attL 4396056:4396110|attR 4404411:4404465

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4396056:4396110	attL	NA	NA	NA	NA
WP_007975311.1\|4396900_4397881_-\|transposase	IS5-like element ISXfu2 family transposase	A0A077K814	Ralstonia_phage	1.1e-97	59.5
WP_022559443.1\|4398016_4398574_-	hypothetical protein	NA	NA	NA	NA
WP_022559445.1\|4398990_4399170_+	hypothetical protein	NA	NA	NA	NA
WP_127459505.1\|4399138_4399672_-	hypothetical protein	NA	NA	NA	NA
WP_099800740.1\|4400059_4401043_+\|transposase	IS5-like element ISXfu1 family transposase	A0A077K814	Ralstonia_phage	5.3e-97	59.6
WP_131705194.1\|4401114_4401705_+	hypothetical protein	NA	NA	NA	NA
WP_007975311.1\|4402351_4403332_+\|transposase	IS5-like element ISXfu2 family transposase	A0A077K814	Ralstonia_phage	1.1e-97	59.5
WP_022559447.1\|4403563_4403752_+	hypothetical protein	NA	NA	NA	NA
WP_046735358.1\|4403759_4404410_+\|integrase	site-specific integrase	K4PAZ9	Burkholderia_phage	8.0e-41	52.0
WP_007965965.1\|4404678_4405215_+	lipocalin family protein	A0A2I2L3Z7	Orpheovirus	9.0e-14	33.1
4404411:4404465	attR	NA	NA	NA	NA
WP_007974695.1\|4405326_4405803_+	LEA type 2 family protein	NA	NA	NA	NA
WP_007965969.1\|4405841_4407635_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_022559449.1\|4407887_4408544_+	HNH endonuclease	F5B475	Synechococcus_phage	3.0e-11	40.2
WP_033481506.1\|4408977_4410894_+	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA
WP_022559451.1\|4410929_4412186_-	glycosyl transferase	NA	NA	NA	NA
WP_007974702.1\|4412175_4412787_-	hypothetical protein	NA	NA	NA	NA
WP_022559453.1\|4412764_4413919_-	glycosyltransferase	NA	NA	NA	NA
WP_022559454.1\|4413909_4414869_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_022559455.1\|4414865_4415714_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_033481497.1\|4415713_4416712_-	3-oxoacyl-ACP synthase	NA	NA	NA	NA
WP_007965982.1\|4418019_4418481_-	cupin domain-containing protein	A0A291AU44	Pandoravirus	1.8e-18	41.5
WP_080949397.1\|4418515_4419307_-	WecB/TagA/CpsF family glycosyltransferase	NA	NA	NA	NA
WP_007965984.1\|4419314_4420109_-	polysaccharide pyruvyl transferase family protein	A0A1V0SAR6	Catovirus	7.0e-23	36.5
WP_022559458.1\|4420146_4421343_-	glycosyltransferase	NA	NA	NA	NA
WP_033481496.1\|4421406_4422897_-	lipopolysaccharide biosynthesis protein	NA	NA	NA	NA
WP_022559460.1\|4422914_4423964_-	glycosyltransferase	NA	NA	NA	NA
WP_005920309.1\|4423960_4425103_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_099770784.1\|4425170_4426229_-	acyltransferase family protein	NA	NA	NA	NA
WP_046832316.1\|4426272_4427364_-	acyltransferase family protein	NA	NA	NA	NA
WP_007965996.1\|4427360_4428662_-	hypothetical protein	NA	NA	NA	NA
WP_005920304.1\|4428744_4430199_-	undecaprenyl-phosphate glucose phosphotransferase	NA	NA	NA	NA
WP_087945331.1\|4430441_4431881_-	GumC family protein	NA	NA	NA	NA
WP_011051691.1\|4431862_4432504_-	polysaccharide export protein	NA	NA	NA	NA
WP_005995911.1\|4433169_4433526_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_002811076.1\|4433506_4433806_-	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	4.7e-12	38.9
WP_039731424.1\|4433827_4436206_-\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_007974727.1\|4436320_4437316_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	3.0e-31	35.6
WP_003484828.1\|4437566_4437926_-	50S ribosomal protein L20	NA	NA	NA	NA
WP_002811096.1\|4437936_4438134_-	50S ribosomal protein L35	NA	NA	NA	NA
WP_077708941.1\|4438380_4438923_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	1.5e-13	35.2
WP_033481495.1\|4438971_4440876_-\|tRNA	threonine--tRNA ligase	A0A2K9L6B6	Tupanvirus	3.6e-126	36.3
WP_022559467.1\|4441188_4442319_+	LacI family transcriptional regulator	C6ZCU4	Enterobacteria_phage	2.2e-14	26.7
WP_080720900.1\|4442402_4444181_-	cyclomaltodextrin glucanotransferase	NA	NA	NA	NA
WP_046832315.1\|4444075_4445554_-	MFS transporter	NA	NA	NA	NA
WP_046832314.1\|4445550_4447737_-	Six-hairpin glycosidase-like protein	NA	NA	NA	NA
WP_039731606.1\|4447980_4450062_+	glycoside hydrolase family 97 protein	NA	NA	NA	NA
WP_011345585.1\|4451287_4452514_+\|transposase	IS256-like element ISXax1 family transposase	A0A218MNI5	uncultured_virus	2.2e-52	50.3
WP_099770788.1\|4452562_4453545_-\|transposase	IS5-like element ISXfu1 family transposase	A0A077K814	Ralstonia_phage	9.7e-99	60.2

DBSCAN-SWA_9

4492624 : 4503392

uncultured_Caudovirales_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_033481262.1\|4492624_4494583_-	PAS domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	1.6e-12	42.0
WP_003481884.1\|4495891_4496104_-	carbon storage regulator CsrA	J7I430	Pseudomonas_phage	1.3e-13	76.5
WP_022559538.1\|4496243_4498892_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	1.7e-84	40.0
WP_007966764.1\|4498993_4499482_-	recombination regulator RecX	NA	NA	NA	NA
WP_003481871.1\|4499779_4500814_-	recombinase RecA	A0A0S2MVG1	Bacillus_phage	5.1e-114	61.3
WP_007966767.1\|4500986_4501628_-	transcriptional repressor LexA	A0A1W6JNS2	Morganella_phage	2.4e-13	40.2
WP_022559539.1\|4501715_4503392_-	2-polyprenylphenol 6-hydroxylase	G8DDN0	Micromonas_pusilla_virus	1.1e-41	29.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP020998

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection