CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number
NZ_CP024217	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-9	0 crisprs	NA	0	0
NZ_CP024220	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-12	0 crisprs	NA	0	0
NZ_CP024214	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-7	0 crisprs	NA	0	0
NZ_CP024209	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-2	0 crisprs	NA	0	0
NZ_CP024219	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-11	0 crisprs	NA	0	0
NZ_CP024208	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp41, complete sequence	0 crisprs	NA	0	0
NZ_CP024212	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-5	1 crisprs	NA	1	1
NZ_CP024222	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp6, complete sequence	0 crisprs	NA	0	0
NZ_CP024207	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-1	0 crisprs	NA	0	0
NZ_CP024211	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-4	0 crisprs	NA	0	0
NZ_CP024213	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-6	0 crisprs	NA	0	0
NZ_CP024206	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp72, complete sequence	0 crisprs	NA	0	0
NZ_CP024216	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp23, complete sequence	1 crisprs	NA	1	1
NZ_CP024221	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-13	0 crisprs	NA	0	0
NZ_CP024215	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-8	0 crisprs	NA	0	0
NZ_CP024210	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-3	0 crisprs	NA	0	0
NZ_CP024218	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-10	0 crisprs	NA	0	0
NZ_CP024205	Borrelia miyamotoi strain Izh-5 chromosome, complete genome	0 crisprs	NA	0	0

Cas Category Instructions

Results visualization

1. NZ_CP024212

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP024212_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024212_1

2363-2477

Orphan

Consensus_repeat	Method
TTCATCTCCTTGAACAACATTTACAACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP024212_1

>merge|NZ_CP024212|1|2363-2477|CRISPRCasFinder
TTCATCTCCTTGAACAACATTTACAACCTCTTTTGAATCATCATCTTCTATTACTTCTTTTCTAACAGACTCTTCTTTGACTGCTGGTTCATCTCCTTGAACACCATTTACAACC

>NZ_CP024212|1|1|2363-2477|CRISPRCasFinder
TTCATCTCCTTGAACAACATTTACAACC	TCTTTTGAATCATCATCTTCTATTACTTCTTTTCTAACAGACTCTTCTTTGACTGCTGG
TTCATCTCCTTGAACACCATTTACAACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024212.1\|WP_025444235.1\|7951_9022_-\|Variable-large-protein-18	unknown	unknown	gnl\|CDD\|376417
NZ_CP024212.1\|WP_025444234.1\|5861_6902_-\|Variable-large-protein-15/16	unknown	unknown	gnl\|CDD\|376417
NZ_CP024212.1\|WP_025444232.1\|3779_4670_-\|P12-family-lipoprotein	unknown	unknown	unknown
NZ_CP024212.1\|WP_025444483.1\|17633_18704_-\|Variable-large-protein-15/16	unknown	unknown	gnl\|CDD\|376417
NZ_CP024212.1\|WP_099497295.1\|15511_16555_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376417
NZ_CP024212.1\|WP_099497170.1\|10458_11532_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376417
NZ_CP024212.1\|WP_099497297.1\|16851_17424_-\|vsp-protein	unknown	unknown	gnl\|CDD\|366644
NZ_CP024212.1\|WP_025444482.1\|18861_19908_-\|Variable-large-protein-15/16	unknown	unknown	gnl\|CDD\|376417
NZ_CP024212.1\|WP_025444230.1\|323_1622_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024212.1\|WP_099497171.1\|12891_13485_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376417
NZ_CP024212.1\|WP_025444237.1\|11684_12746_-\|Variable-large-protein-15/16	unknown	unknown	gnl\|CDD\|376417

Protein	Function_ID	Function_description	E-value
NZ_CP024212.1\|WP_025444235.1\|7951_9022_-\|Variable-large-protein-18	gnl\|CDD\|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	6.78447e-55
NZ_CP024212.1\|WP_025444234.1\|5861_6902_-\|Variable-large-protein-15/16	gnl\|CDD\|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	1.99194e-59
NZ_CP024212.1\|WP_025444483.1\|17633_18704_-\|Variable-large-protein-15/16	gnl\|CDD\|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	1.74369e-63
NZ_CP024212.1\|WP_099497295.1\|15511_16555_-\|hypothetical-protein	gnl\|CDD\|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	1.17064e-29
NZ_CP024212.1\|WP_099497170.1\|10458_11532_-\|hypothetical-protein	gnl\|CDD\|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	2.83588e-62
NZ_CP024212.1\|WP_099497297.1\|16851_17424_-\|vsp-protein	gnl\|CDD\|366644	pfam01441, Lipoprotein_6, Lipoprotein. Members of this family are lipoproteins that are probably involved in evasion of the host immune system by pathogens.	2.41839e-48
NZ_CP024212.1\|WP_025444237.1\|11684_12746_-\|Variable-large-protein-15/16	gnl\|CDD\|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	1.7131e-65
NZ_CP024212.1\|WP_099497171.1\|12891_13485_-\|hypothetical-protein	gnl\|CDD\|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	2.90865e-26
NZ_CP024212.1\|WP_025444482.1\|18861_19908_-\|Variable-large-protein-15/16	gnl\|CDD\|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	2.14628e-64

>NZ_CP024212.1|WP_025444230.1|323_1622_+|hypothetical-protein
MIFKNKYLALTLLLSLVGCKFFITEEESQKKFSRTLDKVNSMILNASETAMKNIFSDNQHSEIHLSKINSTNKKDISPKQPESQKDILVSASSMPKKEEFSSTKHKDITITTAYTSQNKSYSNSNIIIDNASITTSNTDANTVIQETDINTLPTKTDLTHTTAYNISTLDDNTIYSSDNNSSHQNSEITEYQSNNNILIRGHNKIPLNALNGESHNIQYGYTYNSHDDSTPIISGSYSNSSMTVEEDEFDKNDDEDSKLETRLDNQYKFKLKNITDSVEQALKIAKQIKDDLDIIEFHRIKLSNHYGIRAEEHEKQTAREELSKFSKDKLEADLKKLLSEIEKSLNAATILITYNDYGGNLQSDLSAKTTLEALKTEVSSLITKIQDFNNKDHQAYPTSYYNDYQTYQALRNPYSKLTLVKDLLTRTGIVAR
>NZ_CP024212.1|WP_025444232.1|3779_4670_-|P12-family-lipoprotein
MKKSILAVCMLVLLSLLSCDINALNEMLNKAREKYLEESKKVKGLNSKDGNQEGEEEQADVVEQHMEEGVKEVVQAVPVDMNNEEIPVILSSPYYPNQEEIKIKEEDLVPSTNEEKEAQKEIEKAERVFKDSEFVKLTEEQLRGLKSEYEQLESSFYSTLSEFRNKIGSYPRDNRRKRQEVTRFQRELNDRRFNVERLIIQVDSGLDELGSAELFFNKAKGTLKEGITERLRNKRRNYWSRKVDSDLIARQALREAENALSQLESSSIKLIEAMGIKKEIEALIEEARSVLENLER
>NZ_CP024212.1|WP_025444234.1|5861_6902_-|Variable-large-protein-15/16
MTLFLIIGCNNGGGEDPQKVFLTSIANLGKGFLDVFVIFGDMITGAFGIKAETKKSEVGQYFTDIETTMKTVKDKLNDVVAKNGNYPKVKTAVDGFVAILDKIGNGAKKAAAGATGGAAIGEVVKSDAAGNGPDAGSVKNLVVGIKEIVDLVIKEGDGQADKTNPVDDDKKNIGKLFGAETSADKGAEDKHVAAASASIGAVSGADILKAIAAANADATKDGKVKDVKDAAGLALAKGTGTADDDKLTTAESKKDAIIAAGIALRAMAKDGKFIVKDTAANKTEAESAKGVAASAVGKTLSTLIIAIRNTVDSGLKTINEVLATVRQEDKSSEAIKTAEVTTSVKK
>NZ_CP024212.1|WP_025444235.1|7951_9022_-|Variable-large-protein-18
MEKRSERKNILIIMMIVLLMIGCGQQTEGNSAASGGVGSGLSGAMMEVGRSAENVFYAFMELVSDVLGFTAKTTTKKNDVGVYFNSLGVKLGEASKELEEVAKKAETGIDKNDSSKNLIKEAVEVTKKVLATLKGHLESLGQVGDSNLVGDAATDDKGVTAGTDALKGAFKALKGIIDIAEGAGVAKPKAGSTAVKLSNADNKDGAKILATDNKAGVNDVGKAAVILASVSGEEILASIVESTENKAVKISTNVTASTTPLEFALGGNGAHLAQDAALASAVSGGIALRSLVKDGKLASGAADGSAGGKEEVQKVGITAANKLLGAVEDIIKKTVKNILEKAKTKIDEARNSKTAE
>NZ_CP024212.1|WP_099497170.1|10458_11532_-|hypothetical-protein
MKKRKTLSAIIMTLFLIIGCNNGGGEDPQKVFLTSIANLGKGFLDVFVTFGDMVTGAFGIKAETKKSDVGKYFTDIETTMKAVKDKLNTVVAENSNYPKVKEVVDQFITGTLDKIAEGAKIAASGATDVASIGEVVKSDAAGNSPNAESVKNLVEGIKKIVALVITEGNGQADKTTPVDDDKKNIGKLFGAKNEASKGAEDKHVAAASASIGAVTGADILKAIAAANADAKKDGKVSEATDAAALALAKGTSTDNEDQLGDSAKKDAIIAAGIALRAMAKDGKFIVKDTAEKKTEAESAKGVAASAVGKTLSTLIIAIRDTVDSGLKKINEALATVKQEDKSAEATKTAESTASAQQ
>NZ_CP024212.1|WP_025444237.1|11684_12746_-|Variable-large-protein-15/16
MSKRKTLSAIIMTLFLIIGCNNGGGEDPQKVFLTSIANLGKGFLDVFVTFGDMITGAFGIKADTKKSDVGKYFTDIEKTMLSVKEKLQAEVAANGNYEKVKTVVDQFITGTLDKIAAGAKEAAKGATGEAIGNATSAGHGATPADKDSVISLVKGIKTIVGVVLKDNEGNAEATKTKDEQQKSIGNLFADSAGKDDAKEENIAKASASIGAVSGADILQAIAQSKENPAVDSTDGIEKAKDAAEIAIAPAVANKKEIKEASAKKDAVIAAGIALRAMAKDGKFAAKNEEKSAHAVNGAAASAVGKTLSTLIIAIRNTVDSGLKTINETLATVKQEDKSAEATNTAESTASVKK
>NZ_CP024212.1|WP_099497171.1|12891_13485_-|hypothetical-protein
MVIKEGDGQADKTKPVDDDKKDIGRLFGAETTADSKGAEDKHVAVAIASIGVVSGADILKAIAEANAAAKKDGKVKDATDAAALALAKGTGTANDEKLTTAESKKDAVIAAGIALRAMAKDGKFIVKDTAEKKTEAESAKGVAASAVGKTLSTLIIAIRDTVDSGLKKINEALATVKQEDKSAEATNTAESTASAQQ
>NZ_CP024212.1|WP_099497295.1|15511_16555_-|hypothetical-protein
MTLFLLFSCGGQLQAEKLAAENKNNFLDSLVKIGQGFQEIFGIFGNAIGDALGLTAVKSGDKRNKVGEHFKKIGNGLTETNNKLKELAGQMSEAKNADESTIKVVEDAIKGANEVFEKLVDAITKLAGVTNDSATDIGDTASAGAAVAADKNSVDTVIAEVKKILDAAEKSGVKVEKGNAGSPVAASNSTDATAVLAANAAAGANAGPKLADEVSKADPWAMIDKIKDSKTTAGNLSQNNHYDAGTLAVGTPNHANGAGAATNADLAAAVALKAMTTSGKLSATANEVVGVKAAGVSAVNKVLGVFDLIIRKTVARNLDKIREAVKEIQYSETTGTNTQDIQSTATK
>NZ_CP024212.1|WP_099497297.1|16851_17424_-|vsp-protein
MISCGSGGPAPKEGQAAKADGTVIDLAKISKKIKDAVEFAASVKEVETLVKSVDELAKAIGKKVEAGGTLGDDGGQNGSLISGAYSVVLSADAKLGQLENKEGISTELKAKVTAAKAASKKFLDTVKGANTDLGKKDASDENAKKALLKSDAAGDKGAKDLIALNTAIDELLKATEASIEAVIAELTTLG
>NZ_CP024212.1|WP_025444483.1|17633_18704_-|Variable-large-protein-15/16
MSKRKTLSAIIMTLFLIIGCNNGGGEDPQKVFLTSIANLRKGFLDVFVTFGDMITGAFGIKAETKKSDVGKYFTDIAETMESVKKKLQAEVAANSNYEKVKTVVDQFITETLNKIAVGAKEAAKGATTDIAIGNATSNGHGASPAADKGSVISLVKGIKTIVDVALKDKGDAGATKTGDDKKDIGNLFADDAGKAEAKEENIAKAVASIGAVTGADVLQAIVQSNENPTANSTDGIEKAKDAAEIAIAPAVSNKKEIKEASAKKDAVIAAGIALRAMAKGGKFAANNNAKDADAVNGVAASVVGKTLSTLIIAVRNTVDSGLKTINEVLSTLKQEDKSAEVTKTAESTASVKNKEL
>NZ_CP024212.1|WP_025444482.1|18861_19908_-|Variable-large-protein-15/16
MSKRKTLSAIIMTLFLIIGCNNGGGEDPQKVFLTSIANLGKGFLDVFVTFGDMVTGAFGIKAETKKSEVGQYFTSIAETMESVKKKLQSEVAKNGNYEKVKTVVDKFITETLDKIASGAKEAAKGANGDAAIGNAVKNEDAAPGEVASVNALVKGIKEIVGVVLKKGEGDSEATKTADTEKKSVGKLLGKGANDGTETQAAAASASIGAVSGVDILQAIAKSGEAATGEIKIEEAKNAAEIAAAKADSKDLEIDSAKKDAVIAGGIALRAMAKNGKFAAKNNEDKSAHSVNGVAASAVGKTLSTLIIAIRNTVDSGLKAINEVLATVKQEDKSGESTNAAEVTTSAQK

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP024212_1	1.1\|2391\|59\|NZ_CP024212\|CRISPRCasFinder	2391-2449	59	NZ_CP024215.1	1699-1757	0	1.0
NZ_CP024212_1	1.1\|2391\|59\|NZ_CP024212\|CRISPRCasFinder	2391-2449	59	NZ_CP024208.1	37689-37747	0	1.0

1. spacer 1.1|2391|59|NZ_CP024212|CRISPRCasFinder matches to position: 1699-1757, mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

2. spacer 1.1|2391|59|NZ_CP024212|CRISPRCasFinder matches to position: 37689-37747, mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Identity
NZ_CP024212_1	1.1\|2391\|59\|NZ_CP024212\|CRISPRCasFinder	2391-2449	59	NZ_CP024394	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-2	2392-2450	1.0
NZ_CP024212_1	1.1\|2391\|59\|NZ_CP024212\|CRISPRCasFinder	2391-2449	59	NZ_CP024319	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-lp23, complete sequence	2348-2406	1.0
NZ_CP024212_1	1.1\|2391\|59\|NZ_CP024212\|CRISPRCasFinder	2391-2449	59	NZ_CP024396	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp29, complete sequence	2441-2499	1.0
NZ_CP024212_1	1.1\|2391\|59\|NZ_CP024212\|CRISPRCasFinder	2391-2449	59	NZ_CP024212	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-5	2391-2449	1.0
NZ_CP024212_1	1.1\|2391\|59\|NZ_CP024212\|CRISPRCasFinder	2391-2449	59	NZ_CP024215	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-8	1699-1757	1.0
NZ_CP024212_1	1.1\|2391\|59\|NZ_CP024212\|CRISPRCasFinder	2391-2449	59	NZ_CP024399	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp24, complete sequence	2486-2544	1.0
NZ_CP024212_1	1.1\|2391\|59\|NZ_CP024212\|CRISPRCasFinder	2391-2449	59	NZ_CP024354	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp41-1, complete sequence	2439-2497	1.0
NZ_CP024212_1	1.1\|2391\|59\|NZ_CP024212\|CRISPRCasFinder	2391-2449	59	NZ_CP024359	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-5	2448-2506	1.0
NZ_CP024212_1	1.1\|2391\|59\|NZ_CP024212\|CRISPRCasFinder	2391-2449	59	NZ_CP024362	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp23, complete sequence	20919-20977	1.0
NZ_CP024212_1	1.1\|2391\|59\|NZ_CP024212\|CRISPRCasFinder	2391-2449	59	NZ_CP024362	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp23, complete sequence	16099-16157	1.0
NZ_CP024212_1	1.1\|2391\|59\|NZ_CP024212\|CRISPRCasFinder	2391-2449	59	NZ_CP024385	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-10	793-851	1.0
NZ_CP024212_1	1.1\|2391\|59\|NZ_CP024212\|CRISPRCasFinder	2391-2449	59	NZ_CP024403	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-10	10956-11014	1.0
NZ_CP024212_1	1.1\|2391\|59\|NZ_CP024212\|CRISPRCasFinder	2391-2449	59	NZ_CP024324	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-5	21493-21551	1.0
NZ_CP024212_1	1.1\|2391\|59\|NZ_CP024212\|CRISPRCasFinder	2391-2449	59	NZ_CP024393	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp41, complete sequence	38695-38753	1.0
NZ_CP024212_1	1.1\|2391\|59\|NZ_CP024212\|CRISPRCasFinder	2391-2449	59	NZ_CP024397	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp23, complete sequence	25222-25280	1.0
NZ_CP024212_1	1.1\|2391\|59\|NZ_CP024212\|CRISPRCasFinder	2391-2449	59	NZ_CP024208	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp41, complete sequence	37689-37747	1.0
NZ_CP024212_1	1.1\|2391\|59\|NZ_CP024212\|CRISPRCasFinder	2391-2449	59	NZ_CP024216	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp23, complete sequence	20606-20664	1.0
NZ_CP024212_1	1.1\|2391\|59\|NZ_CP024212\|CRISPRCasFinder	2391-2449	59	NZ_CP024355	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp41-2, complete sequence	37689-37747	1.0
NZ_CP024212_1	1.1\|2391\|59\|NZ_CP024212\|CRISPRCasFinder	2391-2449	59	NZ_CP024361	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-7	21519-21577	1.0
NZ_CP024212_1	1.1\|2391\|59\|NZ_CP024212\|CRISPRCasFinder	2391-2449	59	NZ_CP024380	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-5	22781-22839	1.0

1. spacer 1.1|2391|59|NZ_CP024212|CRISPRCasFinder matches to NZ_CP024394 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-2) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

2. spacer 1.1|2391|59|NZ_CP024212|CRISPRCasFinder matches to NZ_CP024319 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

3. spacer 1.1|2391|59|NZ_CP024212|CRISPRCasFinder matches to NZ_CP024396 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp29, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

4. spacer 1.1|2391|59|NZ_CP024212|CRISPRCasFinder matches to NZ_CP024212 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-5) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

5. spacer 1.1|2391|59|NZ_CP024212|CRISPRCasFinder matches to NZ_CP024215 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-8) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

6. spacer 1.1|2391|59|NZ_CP024212|CRISPRCasFinder matches to NZ_CP024399 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp24, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

7. spacer 1.1|2391|59|NZ_CP024212|CRISPRCasFinder matches to NZ_CP024354 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp41-1, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

8. spacer 1.1|2391|59|NZ_CP024212|CRISPRCasFinder matches to NZ_CP024359 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-5) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

9. spacer 1.1|2391|59|NZ_CP024212|CRISPRCasFinder matches to NZ_CP024362 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

10. spacer 1.1|2391|59|NZ_CP024212|CRISPRCasFinder matches to NZ_CP024362 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

11. spacer 1.1|2391|59|NZ_CP024212|CRISPRCasFinder matches to NZ_CP024385 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-10) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

12. spacer 1.1|2391|59|NZ_CP024212|CRISPRCasFinder matches to NZ_CP024403 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-10) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

13. spacer 1.1|2391|59|NZ_CP024212|CRISPRCasFinder matches to NZ_CP024324 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-5) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

14. spacer 1.1|2391|59|NZ_CP024212|CRISPRCasFinder matches to NZ_CP024393 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp41, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

15. spacer 1.1|2391|59|NZ_CP024212|CRISPRCasFinder matches to NZ_CP024397 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

16. spacer 1.1|2391|59|NZ_CP024212|CRISPRCasFinder matches to NZ_CP024208 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp41, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

17. spacer 1.1|2391|59|NZ_CP024212|CRISPRCasFinder matches to NZ_CP024216 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

18. spacer 1.1|2391|59|NZ_CP024212|CRISPRCasFinder matches to NZ_CP024355 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp41-2, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

19. spacer 1.1|2391|59|NZ_CP024212|CRISPRCasFinder matches to NZ_CP024361 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-7) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

20. spacer 1.1|2391|59|NZ_CP024212|CRISPRCasFinder matches to NZ_CP024380 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-5) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP024216

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP024216_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024216_1

20578-20692

Orphan

Consensus_repeat	Method
GGTTGTAAATGGTGTTCAAGGAGATGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP024216_1

>merge|NZ_CP024216|1|20578-20692|CRISPRCasFinder
GGTTGTAAATGGTGTTCAAGGAGATGAACCAGCAGTCAAAGAAGAGTCTGTTAGAAAAGAAGTAATAGAAGATGATGATTCAAAAGAGGTTGTAAATGTTGTTCAAGGAGATGAA

>NZ_CP024216|1|1|20578-20692|CRISPRCasFinder
GGTTGTAAATGGTGTTCAAGGAGATGAA	CCAGCAGTCAAAGAAGAGTCTGTTAGAAAAGAAGTAATAGAAGATGATGATTCAAAAGA
GGTTGTAAATGTTGTTCAAGGAGATGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024216.1\|WP_099590939.1\|16432_17467_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376417
NZ_CP024216.1\|WP_132998493.1\|10478_11456_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376417
NZ_CP024216.1\|WP_025444401.1\|12815_13865_+\|Variable-large-protein-15/16	unknown	unknown	gnl\|CDD\|376417
NZ_CP024216.1\|WP_025444486.1\|17491_18082_+\|Variable-small-protein-1	unknown	unknown	gnl\|CDD\|366644
NZ_CP024216.1\|WP_025444400.1\|14006_15044_+\|Variable-large-protein-15/16	unknown	unknown	gnl\|CDD\|376417
NZ_CP024216.1\|WP_099498349.1\|18448_19339_+\|P12-family-lipoprotein	unknown	unknown	unknown
NZ_CP024216.1\|WP_025444404.1\|9576_10233_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366644
NZ_CP024216.1\|WP_025444405.1\|8376_9423_+\|Variable-large-protein-15/16	unknown	unknown	gnl\|CDD\|376417
NZ_CP024216.1\|WP_025444399.1\|15201_16233_+\|Variable-large-protein-15/16	unknown	unknown	gnl\|CDD\|376417
NZ_CP024216.1\|WP_025444230.1\|21432_22731_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024216.1\|WP_099497172.1\|7198_8218_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376417

Protein	Function_ID	Function_description	E-value
NZ_CP024216.1\|WP_099590939.1\|16432_17467_+\|hypothetical-protein	gnl\|CDD\|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	1.56349e-60
NZ_CP024216.1\|WP_132998493.1\|10478_11456_+\|hypothetical-protein	gnl\|CDD\|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	4.20087e-60
NZ_CP024216.1\|WP_025444401.1\|12815_13865_+\|Variable-large-protein-15/16	gnl\|CDD\|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	1.11908e-65
NZ_CP024216.1\|WP_025444486.1\|17491_18082_+\|Variable-small-protein-1	gnl\|CDD\|366644	pfam01441, Lipoprotein_6, Lipoprotein. Members of this family are lipoproteins that are probably involved in evasion of the host immune system by pathogens.	1.91175e-55
NZ_CP024216.1\|WP_025444400.1\|14006_15044_+\|Variable-large-protein-15/16	gnl\|CDD\|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	2.54508e-60
NZ_CP024216.1\|WP_025444404.1\|9576_10233_+\|hypothetical-protein	gnl\|CDD\|366644	pfam01441, Lipoprotein_6, Lipoprotein. Members of this family are lipoproteins that are probably involved in evasion of the host immune system by pathogens.	8.77464e-52
NZ_CP024216.1\|WP_025444405.1\|8376_9423_+\|Variable-large-protein-15/16	gnl\|CDD\|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	4.85415e-61
NZ_CP024216.1\|WP_025444399.1\|15201_16233_+\|Variable-large-protein-15/16	gnl\|CDD\|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	9.22003e-63
NZ_CP024216.1\|WP_099497172.1\|7198_8218_+\|hypothetical-protein	gnl\|CDD\|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	6.82176e-68

>NZ_CP024216.1|WP_099498349.1|18448_19339_+|P12-family-lipoprotein
MKKNILAVCILILLSLLSCDINALNEMLNKAREKYLEESKKVKSLNSKDGNQEGEEEQADVVEQHMEEGIKDVVQGVPVDMNNEEIPVILSSPYYPNQEEIKIKEEDLVPSTNEEKEAQKEIEKAERVFQDSEFVKLTEKQLLGLESEDEQLESSFYSTLSELQNKIGSYPRKDKTERQKLIQLLNQLNKERSHVDMFRIQVDSGLYEIASSKSFFEKSQDTLKEAIIKRLKNKRRSYWSRKVDSDLIARQALREAENALSQLESSSIKLIEAMGIKKEIEALIEEARSVLENLER
>NZ_CP024216.1|WP_025444486.1|17491_18082_+|Variable-small-protein-1
MISCGNGGPAPKEGQAAKADGTVIDLVKVSKKIKDAVEFATSVKEVETLVKSVDELAKAIGKKIKNDGTLENETDKNGSLLAGAHSVILAVKTKVGALETTSGISNELKTKITDVKSKAEAFLGKLKDKSSDLGKNDVKDTDAKSAILTTDATKDKGAKELVELNTAVDELLKVANDEVESAIKVFISPVKAATSG
>NZ_CP024216.1|WP_099590939.1|16432_17467_+|hypothetical-protein
MTLFLGLVSCNSSATVAEESPQSRFLKSVISLGNDFLNVFTSFGDMVGGVLRFNSNTKKSDVGAYFKKVHDTVEGTKKSLEKIVADMRSEGNPNAEATDTAVKKLVSETLSKIIEGAKTASEAIGDASDPIGNVAVAAAGGGAGVAGTGVDSLVKGIKGIVDVVLKGVGNADAGDANKAEDGKTERTAAGDGEAGKLFATANAGDTADKAKKVAADAAKAVGAVTGADILQAIVKNGASAAADAAKAKAKDGIIAGAIALRAMAKGGKFANASAADNEGIVTSAVKGAALSAVTKALDTLTVAIRKTMDLGLKEVKDAMKINNAINANDTIVTSDKKTSEAKSE
>NZ_CP024216.1|WP_025444399.1|15201_16233_+|Variable-large-protein-15/16
MSKRKTLSAIIMTLFLIIGCNNGGGEDPQKVFLTSIANLGKGFLDVFVTFGDMVTGAFGIKAETKKSDIGQYFIDIEKTMISVKEKLQAEVVKNGNYEKVKTVVDQFITGTLDKIAAGAKEAAKGATGDAAIGNAVKDQAATHADATSVNALVKGIKEIVDVVLEKDEGNAEATKTADAEQKSIGKLLGKKDDGTEAHAAAASASIGAVTGADILQAIAKSGEAANNDVGIEQAKNAAEIAAAKKEDDKEFGIASAKKDAVIAGGIALRAMAKNGKFAAKNDDKSANAVKGAAASAVGKTLSTLIIAIRNTVDSGLKKINEALATVKQEDKSAEVINATESTS
>NZ_CP024216.1|WP_025444400.1|14006_15044_+|Variable-large-protein-15/16
MSKRKTLSAIIMTLFLIIGCNNGGGEDPQKVFLTSIANLGKGFLDVFVTFGDMITGAFGIKAETKKSDVGKYFTDIAETMESVKKKLQAEVAANGNYEKVKTVVDKFITETLDKIASGAKEASKGATTDVAIGNAKKEEAAVAADTSSVNSLVKGIKAIVAVVLREGKADATKTAESEQKSIGKLFSSKKDDDGTEAQAAAASASIGAVSGADILQAIAKSGEATSEAKIETAKDAASIAAAKVEESKSLDVAKQDAVIAAGIALRAMAKDGKFTAKKDEEKSAHAVNGAAASAVGKTLSTLIIAIRDTVDSGLKKINEALATVKQEDKSAEATKTAESTASAQQ
>NZ_CP024216.1|WP_025444401.1|12815_13865_+|Variable-large-protein-15/16
MKKRKTLSAIIMTLFLIIGCNNGGGEDPQKVFLTSIANLGKGFLDVFVTFGDMITGAFGIKAETKKSDVGQYFTDIAETMESVKKKLQAEVAANGNYEKVKTVVDQFVTGTLDKIAAGAKEAAKGATGSDAIGGAPTTGQDPAPGEAASVNSLVKGIKTIVGVVLKANEGNATATKTAEDDKKDIGKLFEKKDSGTEAEAAKANASIGAVTGADILKAISKSGETADNSKNIEEAKDAASIASAKKEDNKKEIKDEAKKDAVIAAGIALRAMAKDGKFAVKSNEEKSAHAVNGVAASAVGKTLSTLIIAIRNTVDSGLRTINEALATVKQEDKSSEVTKTEEVRTNVKS
>NZ_CP024216.1|WP_132998493.1|10478_11456_+|hypothetical-protein
MANLGKGFLDVFVTFGDMITGAFGIKAETKKSDVGKYFADIEKTMTSVKNKLNTVVAENSNYPKVKEVVDQFITGILDKIAKGAKIAASGATDGVSIGGVVKSDSAGNGPDTESMKNLVVGIKEIVDLVIKEGDGQADKTKPVDDDKKKIGKLFGAKTDANNGAEDKHVAAASASIGAVSGADILKAIAAANADAKKDGKVKDATDAAALALAKGTSTDNEDQLGDSAKKDAIIAAGIALRAMAKDGKFIVKDTAANKTEAESAKGVAASAVGKTLSTLIIAIRNTVDSGLKTINEVLATVKQEDKSVEVTNTAESTASVKNKEL
>NZ_CP024216.1|WP_025444404.1|9576_10233_+|hypothetical-protein
MKKRKTLSAIIMTLFLIINIVMMSCGSGGPAPKEGQVAKADGTVIDLAKVSKKIKDASELMESVKEVETLVKSIDELVKAIGKKIDANGLAADANHNGSLIAGAYSVILAVDTKLGVLGTKAGLSNDLKAKVSATKTESTAFLTKIKGQNSDLGKDTASDEHVKNAIDKNDGTGGKGKEELVKLNTAMTDLTTAVKGELDTAISKLIAEPAKLAGGEN
>NZ_CP024216.1|WP_025444405.1|8376_9423_+|Variable-large-protein-15/16
MKKRKTLSAIIMTLFLIIGCNNGGGEDPQKVFLTSIANLGKGFLDVFVTFGDMITGAFGIKAETKKSDVGKYFTDIEKTMTSVKEKLQAEVAANGNYEKVKTVVDQFITGTLDKIAAGAKEAAKGATGSDAIGGAPTAGQDAAPAEAASVNALVKGIKTIVEVVLKDKGDATATKTKDDQQKTIGKLFEKKESGTEAEAAAASATIGAVTGADILQAIAKSSETADNNKNIEEASNAAEIAAVKKEDNKKEIKNAGAKKDAVIAGGIALRAMAKDGKFAAKNEDKSADSVNGVAASAVGKTLSTLIIAIRNTVDSGLKTINAALATVKQEDKTSEATNTAESTASVKN
>NZ_CP024216.1|WP_099497172.1|7198_8218_+|hypothetical-protein
MTLFLGLVSCNSSATVAEESPQSRFLKSVISLGNDFLNVFTSFGDMVGGVLGFNTNTKKSDVGAYFKKIHDTVEGTKIALEKIVSDMRSEGNPNAEATDTAVKKLVSETLSKIIEGAKTASEAIGDAGDPIGNIATDNNGGAVGTGVDGLIKGIKSIVDVVLSAKEGNAEAGDNKKAEDGNSARNNDGAGKLFDGSTGAAADDKKAAADAAKAVGAVTGADILKAMVKDNGDAAKLAKNSAGIAASGVAAPKDAVMAGGIALRAIAKGGKFANGNNAADAKKIVEGVAVSAVTKALDTLTIAIRKTIDLGLKEVQEAMKINASDTPVISDKKTSEAKSE
>NZ_CP024216.1|WP_025444230.1|21432_22731_-|hypothetical-protein
MIFKNKYLALTLLLSLVGCKFFITEEESQKKFSRTLDKVNSMILNASETAMKNIFSDNQHSEIHLSKINSTNKKDISPKQPESQKDILVSASSMPKKEEFSSTKHKDITITTAYTSQNKSYSNSNIIIDNASITTSNTDANTVIQETDINTLPTKTDLTHTTAYNISTLDDNTIYSSDNNSSHQNSEITEYQSNNNILIRGHNKIPLNALNGESHNIQYGYTYNSHDDSTPIISGSYSNSSMTVEEDEFDKNDDEDSKLETRLDNQYKFKLKNITDSVEQALKIAKQIKDDLDIIEFHRIKLSNHYGIRAEEHEKQTAREELSKFSKDKLEADLKKLLSEIEKSLNAATILITYNDYGGNLQSDLSAKTTLEALKTEVSSLITKIQDFNNKDHQAYPTSYYNDYQTYQALRNPYSKLTLVKDLLTRTGIVAR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP024216_1	1.1\|20606\|59\|NZ_CP024216\|CRISPRCasFinder	20606-20664	59	NZ_CP024215.1	1699-1757	0	1.0
NZ_CP024216_1	1.1\|20606\|59\|NZ_CP024216\|CRISPRCasFinder	20606-20664	59	NZ_CP024208.1	37689-37747	0	1.0

1. spacer 1.1|20606|59|NZ_CP024216|CRISPRCasFinder matches to position: 1699-1757, mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

2. spacer 1.1|20606|59|NZ_CP024216|CRISPRCasFinder matches to position: 37689-37747, mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Identity
NZ_CP024216_1	1.1\|20606\|59\|NZ_CP024216\|CRISPRCasFinder	20606-20664	59	NZ_CP024394	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-2	2392-2450	1.0
NZ_CP024216_1	1.1\|20606\|59\|NZ_CP024216\|CRISPRCasFinder	20606-20664	59	NZ_CP024319	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-lp23, complete sequence	2348-2406	1.0
NZ_CP024216_1	1.1\|20606\|59\|NZ_CP024216\|CRISPRCasFinder	20606-20664	59	NZ_CP024396	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp29, complete sequence	2441-2499	1.0
NZ_CP024216_1	1.1\|20606\|59\|NZ_CP024216\|CRISPRCasFinder	20606-20664	59	NZ_CP024212	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-5	2391-2449	1.0
NZ_CP024216_1	1.1\|20606\|59\|NZ_CP024216\|CRISPRCasFinder	20606-20664	59	NZ_CP024215	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-8	1699-1757	1.0
NZ_CP024216_1	1.1\|20606\|59\|NZ_CP024216\|CRISPRCasFinder	20606-20664	59	NZ_CP024399	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp24, complete sequence	2486-2544	1.0
NZ_CP024216_1	1.1\|20606\|59\|NZ_CP024216\|CRISPRCasFinder	20606-20664	59	NZ_CP024354	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp41-1, complete sequence	2439-2497	1.0
NZ_CP024216_1	1.1\|20606\|59\|NZ_CP024216\|CRISPRCasFinder	20606-20664	59	NZ_CP024359	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-5	2448-2506	1.0
NZ_CP024216_1	1.1\|20606\|59\|NZ_CP024216\|CRISPRCasFinder	20606-20664	59	NZ_CP024362	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp23, complete sequence	20919-20977	1.0
NZ_CP024216_1	1.1\|20606\|59\|NZ_CP024216\|CRISPRCasFinder	20606-20664	59	NZ_CP024362	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp23, complete sequence	16099-16157	1.0
NZ_CP024216_1	1.1\|20606\|59\|NZ_CP024216\|CRISPRCasFinder	20606-20664	59	NZ_CP024385	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-10	793-851	1.0
NZ_CP024216_1	1.1\|20606\|59\|NZ_CP024216\|CRISPRCasFinder	20606-20664	59	NZ_CP024403	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-10	10956-11014	1.0
NZ_CP024216_1	1.1\|20606\|59\|NZ_CP024216\|CRISPRCasFinder	20606-20664	59	NZ_CP024324	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-5	21493-21551	1.0
NZ_CP024216_1	1.1\|20606\|59\|NZ_CP024216\|CRISPRCasFinder	20606-20664	59	NZ_CP024393	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp41, complete sequence	38695-38753	1.0
NZ_CP024216_1	1.1\|20606\|59\|NZ_CP024216\|CRISPRCasFinder	20606-20664	59	NZ_CP024397	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp23, complete sequence	25222-25280	1.0
NZ_CP024216_1	1.1\|20606\|59\|NZ_CP024216\|CRISPRCasFinder	20606-20664	59	NZ_CP024208	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp41, complete sequence	37689-37747	1.0
NZ_CP024216_1	1.1\|20606\|59\|NZ_CP024216\|CRISPRCasFinder	20606-20664	59	NZ_CP024216	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp23, complete sequence	20606-20664	1.0
NZ_CP024216_1	1.1\|20606\|59\|NZ_CP024216\|CRISPRCasFinder	20606-20664	59	NZ_CP024355	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp41-2, complete sequence	37689-37747	1.0
NZ_CP024216_1	1.1\|20606\|59\|NZ_CP024216\|CRISPRCasFinder	20606-20664	59	NZ_CP024361	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-7	21519-21577	1.0
NZ_CP024216_1	1.1\|20606\|59\|NZ_CP024216\|CRISPRCasFinder	20606-20664	59	NZ_CP024380	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-5	22781-22839	1.0

1. spacer 1.1|20606|59|NZ_CP024216|CRISPRCasFinder matches to NZ_CP024394 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-2) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

2. spacer 1.1|20606|59|NZ_CP024216|CRISPRCasFinder matches to NZ_CP024319 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

3. spacer 1.1|20606|59|NZ_CP024216|CRISPRCasFinder matches to NZ_CP024396 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp29, complete sequence) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

4. spacer 1.1|20606|59|NZ_CP024216|CRISPRCasFinder matches to NZ_CP024212 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-5) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

5. spacer 1.1|20606|59|NZ_CP024216|CRISPRCasFinder matches to NZ_CP024215 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-8) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

6. spacer 1.1|20606|59|NZ_CP024216|CRISPRCasFinder matches to NZ_CP024399 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp24, complete sequence) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

7. spacer 1.1|20606|59|NZ_CP024216|CRISPRCasFinder matches to NZ_CP024354 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp41-1, complete sequence) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

8. spacer 1.1|20606|59|NZ_CP024216|CRISPRCasFinder matches to NZ_CP024359 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-5) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

9. spacer 1.1|20606|59|NZ_CP024216|CRISPRCasFinder matches to NZ_CP024362 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

10. spacer 1.1|20606|59|NZ_CP024216|CRISPRCasFinder matches to NZ_CP024362 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

11. spacer 1.1|20606|59|NZ_CP024216|CRISPRCasFinder matches to NZ_CP024385 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-10) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

12. spacer 1.1|20606|59|NZ_CP024216|CRISPRCasFinder matches to NZ_CP024403 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-10) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

13. spacer 1.1|20606|59|NZ_CP024216|CRISPRCasFinder matches to NZ_CP024324 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-5) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

14. spacer 1.1|20606|59|NZ_CP024216|CRISPRCasFinder matches to NZ_CP024393 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp41, complete sequence) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

15. spacer 1.1|20606|59|NZ_CP024216|CRISPRCasFinder matches to NZ_CP024397 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

16. spacer 1.1|20606|59|NZ_CP024216|CRISPRCasFinder matches to NZ_CP024208 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp41, complete sequence) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

17. spacer 1.1|20606|59|NZ_CP024216|CRISPRCasFinder matches to NZ_CP024216 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

18. spacer 1.1|20606|59|NZ_CP024216|CRISPRCasFinder matches to NZ_CP024355 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp41-2, complete sequence) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

19. spacer 1.1|20606|59|NZ_CP024216|CRISPRCasFinder matches to NZ_CP024361 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-7) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

20. spacer 1.1|20606|59|NZ_CP024216|CRISPRCasFinder matches to NZ_CP024380 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-5) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP024215

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP024208

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage