CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP020742	Bartonella henselae strain Houston-I chromosome, complete genome	0 crisprs	cas3,csa3	0	0	3	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

361622 : 452410

105

Haemophilus_phage(14.55%)

tail,terminase,tRNA,capsid,head,integrase,portal,plate

attL 394775:394793|attR 449091:449109

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011180208.1\|361622_364538_+\|tRNA	isoleucine--tRNA ligase	A0A2I2L3Y0	Orpheovirus	8.8e-63	24.8
WP_011180209.1\|364733_365327_+	hypothetical protein	NA	NA	NA	NA
WP_011180210.1\|365389_365836_-	nucleoside deaminase	NA	NA	NA	NA
WP_011180211.1\|366111_367509_+	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_011180212.1\|367489_368059_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA
WP_011180213.1\|370913_372245_+	TldD/PmbA family protein	NA	NA	NA	NA
WP_034447481.1\|372231_373035_+	3'(2'),5'-bisphosphate nucleotidase CysQ	NA	NA	NA	NA
WP_011180215.1\|373080_373326_+	DUF4170 domain-containing protein	K4JVU0	Caulobacter_phage	2.0e-05	37.9
WP_011180216.1\|374149_375472_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA
WP_011180217.1\|375461_376481_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA
WP_011180218.1\|376525_376762_-	DUF2093 domain-containing protein	NA	NA	NA	NA
WP_011180219.1\|376882_378721_-	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	7.1e-111	39.9
WP_034447477.1\|379018_380107_+	2'-deoxycytidine 5'-triphosphate deaminase	NA	NA	NA	NA
WP_011180221.1\|380942_382094_+	FMN-dependent L-lactate dehydrogenase LldD	NA	NA	NA	NA
WP_011180223.1\|384581_384902_-	hypothetical protein	NA	NA	NA	NA
WP_011180224.1\|385082_386510_+	amino acid permease	NA	NA	NA	NA
WP_011180225.1\|386551_387232_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	7.9e-15	27.9
WP_011180226.1\|387228_387867_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA
WP_011180227.1\|387880_388435_+	biotin transporter BioY	NA	NA	NA	NA
WP_157774293.1\|392536_392914_+	hypothetical protein	NA	NA	NA	NA
WP_075320654.1\|392942_393128_+	hypothetical protein	A0A141GEY9	Brucella_phage	3.9e-09	50.8
WP_034447472.1\|393603_393831_+	hypothetical protein	NA	NA	NA	NA
WP_034447468.1\|393962_394181_+	hypothetical protein	NA	NA	NA	NA
394775:394793	attL	NA	NA	NA	NA
WP_011180232.1\|394991_396149_+\|integrase	site-specific integrase	A0A1X9HVL9	Ruegeria_phage	8.0e-76	40.8
WP_011180234.1\|396420_397011_+	hypothetical protein	Q7Y5W2	Haemophilus_phage	6.2e-24	49.6
WP_011180235.1\|397130_397406_+	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA
WP_011180236.1\|397418_397709_+	type II toxin-antitoxin system YafQ family toxin	NA	NA	NA	NA
WP_034447463.1\|397831_398044_-	hypothetical protein	NA	NA	NA	NA
WP_011180238.1\|398172_398400_-	hypothetical protein	NA	NA	NA	NA
WP_011180239.1\|398396_399059_-	glycoside hydrolase family protein	A0A141GEY9	Brucella_phage	2.6e-47	61.5
WP_011180240.1\|399218_399521_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A141GEX6	Brucella_phage	5.4e-16	45.8
WP_011180241.1\|399507_399828_+	putative addiction module antidote protein	A0A141GEX5	Brucella_phage	3.3e-16	46.2
WP_011180242.1\|399871_400150_-	hypothetical protein	NA	NA	NA	NA
WP_011180243.1\|400146_400878_-	phage antirepressor Ant	Q7Y5W2	Haemophilus_phage	1.4e-46	40.7
WP_011180244.1\|401129_401702_-	hypothetical protein	Q7Y5W2	Haemophilus_phage	8.9e-28	40.7
WP_011180245.1\|401729_402278_-	phage antirepressor Ant	A0A0N6WET9	Escherichia_phage	5.9e-21	52.6
WP_011180246.1\|402589_403897_-	phage late control protein	K4HZC6	Acidithiobacillus_phage	1.6e-69	39.8
WP_011180247.1\|403893_404118_-\|tail	phage tail protein	A0A2H4J946	uncultured_Caudovirales_phage	8.3e-06	53.1
WP_011180248.1\|404114_404495_-\|tail	tail protein	D5LGY3	Escherichia_phage	5.7e-23	43.1
WP_011180249.1\|404500_406801_-\|tail	tail protein	A0A0E3U2N9	Fusobacterium_phage	5.4e-15	26.7
WP_075320635.1\|406797_406914_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_011180250.1\|406910_407195_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_011180251.1\|407196_407703_-\|tail	phage major tail tube protein	K4I1G5	Acidithiobacillus_phage	2.6e-31	42.2
WP_011180252.1\|407702_408935_-\|tail	tail protein	A0A088FVH5	Escherichia_phage	1.9e-128	52.2
WP_011180253.1\|409404_409926_+	Rha family transcriptional regulator	A0A159B6D5	Gordonia_phage	3.8e-25	57.1
WP_011180254.1\|409971_410301_-	HigA family addiction module antidote protein	NA	NA	NA	NA
WP_011180255.1\|410388_410568_+	hypothetical protein	A0A222YXG1	Escherichia_phage	4.3e-13	62.5
WP_075320634.1\|410514_410721_-	hypothetical protein	NA	NA	NA	NA
WP_011180256.1\|410863_412189_-	hypothetical protein	NA	NA	NA	NA
WP_011180257.1\|412203_415347_-	DUF4815 domain-containing protein	K4ICQ5	Acidithiobacillus_phage	6.2e-155	34.9
WP_034447459.1\|415348_416455_-	phage protein	K4I1F8	Acidithiobacillus_phage	5.0e-19	36.4
WP_011180259.1\|416454_417282_-	hypothetical protein	A0A219VH98	Ochrobactrum_phage	1.7e-40	34.9
WP_034447457.1\|417278_417620_-\|plate	baseplate assembly protein W	Q75QM0	Wolbachia_phage	1.3e-31	59.6
WP_011180261.1\|417616_418306_-\|plate	phage baseplate assembly protein V	V5YUM9	Pseudomonas_phage	4.1e-19	34.5
WP_011180262.1\|418286_418829_-	hypothetical protein	NA	NA	NA	NA
WP_011180263.1\|418880_419153_+	toxin HicA	A0A2P1A0R7	Gordonia_phage	1.0e-05	60.0
WP_004856761.1\|419142_419460_+	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_011180264.1\|419700_419979_-	hypothetical protein	NA	NA	NA	NA
WP_011180265.1\|419975_420734_-	phage antirepressor Ant	Q7Y5W2	Haemophilus_phage	1.7e-42	38.3
WP_011180266.1\|420752_421307_-	phage antirepressor Ant	Q7Y5W2	Haemophilus_phage	2.4e-22	56.2
WP_011180267.1\|421691_422765_+	hypothetical protein	NA	NA	NA	NA
WP_011180268.1\|422800_423154_-	hypothetical protein	NA	NA	NA	NA
WP_011180269.1\|423155_424232_-\|capsid	major capsid protein	A0A0A8ILA9	Aurantimonas_phage	3.8e-56	35.2
WP_011180270.1\|424244_424613_-\|head	head decoration protein	A0A0A8IL52	Aurantimonas_phage	5.7e-12	46.1
WP_049784565.1\|424609_424930_-	hypothetical protein	NA	NA	NA	NA
WP_034454126.1\|424872_425916_-	S49 family peptidase	K4HZZ6	Acidithiobacillus_phage	8.3e-64	46.6
WP_011180273.1\|425905_427462_-\|portal	phage portal protein	Q75QM9	Wolbachia_phage	3.5e-74	35.5
WP_011180274.1\|427461_427710_-	hypothetical protein	NA	NA	NA	NA
WP_011180275.1\|427713_429642_-\|terminase	phage terminase large subunit family protein	K4I3Y9	Acidithiobacillus_phage	1.8e-165	52.4
WP_011180276.1\|429634_430216_-	hypothetical protein	NA	NA	NA	NA
WP_011180277.1\|430278_430593_+	Killer protein	A0A222YWE2	Escherichia_phage	1.6e-10	39.8
WP_011180278.1\|430609_430906_+	HigA family addiction module antidote protein	M9MUN2	Rhodococcus_phage	6.4e-14	49.4
WP_011180279.1\|431017_431191_+	hypothetical protein	NA	NA	NA	NA
WP_011180280.1\|431315_431579_+	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA
WP_011180281.1\|431565_431847_+	type II toxin-antitoxin system YafQ family toxin	NA	NA	NA	NA
WP_011180242.1\|431889_432168_-	hypothetical protein	NA	NA	NA	NA
WP_011180282.1\|432164_432923_-	phage antirepressor Ant	Q7Y5W2	Haemophilus_phage	3.0e-47	40.7
WP_011180283.1\|432982_433498_-	phage antirepressor Ant	Q7Y5W2	Haemophilus_phage	7.8e-23	55.6
WP_011180285.1\|434385_434928_-	phage antirepressor Ant	A0A0P0ZG08	Escherichia_phage	1.6e-18	46.9
WP_011180287.1\|435524_436103_-	hypothetical protein	A0A0A8IL87	Aurantimonas_phage	3.8e-10	35.0
WP_011180288.1\|436106_436427_-	hypothetical protein	NA	NA	NA	NA
WP_011180290.1\|436899_437295_-	CopG family transcriptional regulator	A0A0U4ISP5	Pseudomonas_phage	1.7e-06	31.1
WP_034447446.1\|437291_437492_-	type II toxin-antitoxin system HicA family toxin	A0A1L2JY37	Aeribacillus_phage	1.6e-08	49.1
WP_034447444.1\|437556_438093_-	hypothetical protein	NA	NA	NA	NA
WP_011180293.1\|438103_438550_-	single-stranded DNA-binding protein	A0A0K1LLZ9	Caulobacter_phage	6.7e-31	55.7
WP_011180826.1\|438740_439022_+	Killer protein	A0A0M3LQB1	Mannheimia_phage	1.1e-18	47.3
WP_034447441.1\|439038_439332_+	HigA family addiction module antidote protein	A0A0M3LPV0	Mannheimia_phage	6.0e-12	46.6
WP_034447437.1\|439373_439700_-	hypothetical protein	NA	NA	NA	NA
WP_038525124.1\|439864_440284_-	hypothetical protein	NA	NA	NA	NA
WP_011180297.1\|440276_441389_-	DUF1376 domain-containing protein	A0A218M9P5	Mycobacterium_phage	1.6e-12	51.5
WP_011180298.1\|441378_441726_-	DUF1376 domain-containing protein	A0A076GD06	Sinorhizobium_phage	1.6e-16	44.1
WP_011180299.1\|441718_442195_-	hypothetical protein	K4ICN3	Acidithiobacillus_phage	3.7e-51	63.8
WP_011180300.1\|442322_443099_+	hypothetical protein	NA	NA	NA	NA
WP_099358257.1\|443107_443473_-	hypothetical protein	NA	NA	NA	NA
WP_034447428.1\|443572_443932_-	hypothetical protein	NA	NA	NA	NA
WP_011180303.1\|444015_444633_+	transcriptional regulator	K7PH71	Enterobacterial_phage	1.4e-05	27.1
WP_011180304.1\|444874_445249_+	hypothetical protein	NA	NA	NA	NA
WP_011180305.1\|445313_445706_+	Rha family transcriptional regulator	B5AX29	Iodobacteriophage	2.5e-21	49.5
WP_038525127.1\|445715_446474_+	antirepressor	Q7Y5W2	Haemophilus_phage	6.0e-40	38.2
WP_034452685.1\|446486_446870_+	hypothetical protein	K4Q356	Edwardsiella_phage	1.0e-11	57.9
WP_038525129.1\|447312_448092_+	recombinase	K4NWX3	Pseudomonas_phage	2.4e-15	31.5
WP_011180604.1\|448093_448717_+	exonuclease	A0A0U2BXF3	Paracoccus_phage	7.4e-44	43.6
WP_011180314.1\|448789_448993_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_011180315.1\|449568_450732_+	phosphoserine transaminase	NA	NA	NA	NA
449091:449109	attR	NA	NA	NA	NA
WP_011180316.1\|451120_452410_+	adenylosuccinate synthase	A0A285PX35	Cedratvirus	4.3e-54	31.8

DBSCAN-SWA_2

1013994 : 1044339

Sulfitobacter_phage(10.53%)

terminase,tail,capsid,integrase,portal

attL 1010035:1010094|attR 1044550:1044669

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1010035:1010094	attL	NA	NA	NA	NA
WP_034447842.1\|1013994_1014975_-\|tail	tail fiber protein	A0A291LA10	Bordetella_phage	6.2e-13	30.7
WP_011180812.1\|1014967_1015891_-	transglycosylase SLT domain-containing protein	L7TQZ1	Rhizobium_phage	3.0e-25	45.0
WP_011180813.1\|1015890_1018110_-	hypothetical protein	NA	NA	NA	NA
WP_011180814.1\|1018102_1019926_-	hypothetical protein	C8CLJ2	Xylella_phage	5.6e-07	25.9
WP_011180815.1\|1019925_1020981_-\|tail	tail fiber domain-containing protein	NA	NA	NA	NA
WP_034447844.1\|1020982_1021366_-	hypothetical protein	NA	NA	NA	NA
WP_011180817.1\|1021407_1022865_-	hypothetical protein	D6PEY0	uncultured_phage	3.2e-37	27.3
WP_011180818.1\|1022864_1023563_-	hypothetical protein	NA	NA	NA	NA
WP_011180819.1\|1023638_1024061_-	hypothetical protein	NA	NA	NA	NA
WP_034447849.1\|1024080_1025226_-\|capsid	N4-gp56 family major capsid protein	A0A248SKT9	Klebsiella_phage	3.7e-33	30.8
WP_011180821.1\|1025322_1026219_-	hypothetical protein	NA	NA	NA	NA
WP_011180822.1\|1026230_1028285_-\|portal	phage portal protein	C5IHN8	Burkholderia_virus	1.2e-29	23.8
WP_011180823.1\|1028269_1029595_-\|terminase	terminase	A0A088F6U9	Sulfitobacter_phage	6.0e-144	57.1
WP_011180626.1\|1029575_1029902_-	hypothetical protein	A0A088FAU1	Sulfitobacter_phage	1.7e-07	40.2
WP_011180624.1\|1030200_1030659_+	hypothetical protein	NA	NA	NA	NA
WP_075320637.1\|1030754_1031147_+	hypothetical protein	NA	NA	NA	NA
WP_011180622.1\|1031176_1031446_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A1S5SB46	Streptococcus_phage	8.5e-13	43.9
WP_007346764.1\|1031429_1031657_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_011180620.1\|1031764_1032097_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA
WP_034448603.1\|1032096_1032354_-	antitoxin	NA	NA	NA	NA
WP_059443338.1\|1032434_1032929_-	hypothetical protein	NA	NA	NA	NA
WP_011180617.1\|1032982_1033429_-	single-stranded DNA-binding protein	A0A0K1LLZ9	Caulobacter_phage	2.0e-30	54.8
WP_011180616.1\|1033640_1033931_+	hypothetical protein	NA	NA	NA	NA
WP_011180615.1\|1033927_1034200_+	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	NA	NA	NA	NA
WP_082246570.1\|1034889_1035276_-	hypothetical protein	NA	NA	NA	NA
WP_011180612.1\|1035259_1036510_-	DUF1376 domain-containing protein	A0A218M9P5	Mycobacterium_phage	5.5e-14	52.9
WP_011180611.1\|1036499_1036979_-	hypothetical protein	K4ICN3	Acidithiobacillus_phage	1.4e-50	64.0
WP_011180610.1\|1037115_1037475_-	hypothetical protein	NA	NA	NA	NA
WP_099358259.1\|1037993_1038263_+	hypothetical protein	NA	NA	NA	NA
WP_011180607.1\|1038501_1038876_+	hypothetical protein	NA	NA	NA	NA
WP_011180606.1\|1038939_1039296_+	hypothetical protein	NA	NA	NA	NA
WP_011180605.1\|1039310_1040042_+	phage regulatory protein/antirepressor Ant	B5AX29	Iodobacteriophage	5.1e-28	41.3
WP_011180308.1\|1040054_1040438_+	hypothetical protein	K4Q356	Edwardsiella_phage	1.0e-11	57.9
WP_011180311.1\|1040879_1041659_+	recombinase	K4NWX3	Pseudomonas_phage	2.4e-15	31.5
WP_011180604.1\|1041660_1042284_+	exonuclease	A0A0U2BXF3	Paracoccus_phage	7.4e-44	43.6
WP_034448587.1\|1042394_1042643_+	hypothetical protein	NA	NA	NA	NA
WP_011180602.1\|1042645_1043683_+\|integrase	tyrosine-type recombinase/integrase	A0A291AUF0	Sinorhizobium_phage	4.1e-31	30.3
WP_011180601.1\|1043739_1044039_-	HigA family addiction module antidote protein	A0A0M3LPV0	Mannheimia_phage	2.8e-17	47.7
WP_011180600.1\|1044057_1044339_-	protein killer suppression protein	A0A0M3LQB1	Mannheimia_phage	1.1e-15	45.1
1044550:1044669	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1139556 : 1150281

uncultured_Mediterranean_phage(71.43%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011180873.1\|1139556_1140675_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	1.0e-96	52.1
WP_011180874.1\|1141838_1142351_-	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	1.2e-47	59.6
WP_011180875.1\|1142373_1142946_-	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	1.2e-43	54.7
WP_034448154.1\|1142935_1143454_-	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	7.1e-24	37.0
WP_011180877.1\|1143478_1146274_-	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	7.0e-102	33.7
WP_011180878.1\|1146506_1147025_-	single-stranded DNA-binding protein	A0A0K1LLZ9	Caulobacter_phage	1.1e-45	59.3
WP_011180879.1\|1147365_1150281_+	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	0.0e+00	60.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage